Multiple sequence alignment - TraesCS4B01G300800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G300800 chr4B 100.000 3638 0 0 1 3638 587063643 587060006 0.000000e+00 6719.0
1 TraesCS4B01G300800 chr4B 82.253 586 96 7 2879 3456 516502419 516501834 1.950000e-137 499.0
2 TraesCS4B01G300800 chr4B 97.354 189 5 0 3450 3638 485372865 485373053 4.530000e-84 322.0
3 TraesCS4B01G300800 chr4B 96.410 195 7 0 3444 3638 529681877 529682071 4.530000e-84 322.0
4 TraesCS4B01G300800 chr3D 85.694 2873 398 12 1 2869 153850588 153853451 0.000000e+00 3016.0
5 TraesCS4B01G300800 chr3D 83.182 1433 234 2 1 1432 289697839 289696413 0.000000e+00 1304.0
6 TraesCS4B01G300800 chr3D 80.596 1644 295 17 1828 3463 289691722 289690095 0.000000e+00 1247.0
7 TraesCS4B01G300800 chr3D 87.970 266 26 3 3196 3456 153853453 153853717 3.530000e-80 309.0
8 TraesCS4B01G300800 chr5A 83.129 3011 452 34 449 3444 91534046 91537015 0.000000e+00 2695.0
9 TraesCS4B01G300800 chr5A 95.431 197 9 0 3442 3638 629771082 629771278 7.580000e-82 315.0
10 TraesCS4B01G300800 chr1A 80.547 1537 278 11 32 1551 148861041 148859509 0.000000e+00 1162.0
11 TraesCS4B01G300800 chr1A 78.718 1513 303 18 1941 3443 148859118 148857615 0.000000e+00 992.0
12 TraesCS4B01G300800 chr7A 78.280 1791 341 30 1687 3463 179172934 179174690 0.000000e+00 1109.0
13 TraesCS4B01G300800 chr7A 79.571 1537 298 15 1916 3443 202155619 202154090 0.000000e+00 1085.0
14 TraesCS4B01G300800 chr7A 82.462 1129 181 7 454 1566 202157096 202155969 0.000000e+00 972.0
15 TraesCS4B01G300800 chr6B 81.045 1187 216 8 2265 3445 67948681 67949864 0.000000e+00 937.0
16 TraesCS4B01G300800 chr1B 86.957 322 37 3 3140 3456 417132002 417131681 1.240000e-94 357.0
17 TraesCS4B01G300800 chr1B 95.897 195 8 0 3444 3638 547287890 547288084 2.110000e-82 316.0
18 TraesCS4B01G300800 chr1B 94.608 204 6 4 3439 3638 319028792 319028994 9.810000e-81 311.0
19 TraesCS4B01G300800 chr7B 97.354 189 5 0 3450 3638 5842659 5842471 4.530000e-84 322.0
20 TraesCS4B01G300800 chr7B 95.455 198 6 3 3442 3638 125785911 125786106 2.730000e-81 313.0
21 TraesCS4B01G300800 chr5B 96.825 189 6 0 3450 3638 492755229 492755041 2.110000e-82 316.0
22 TraesCS4B01G300800 chr2B 95.431 197 8 1 3442 3638 1854330 1854525 2.730000e-81 313.0
23 TraesCS4B01G300800 chr4D 71.429 392 102 9 796 1182 360604728 360605114 1.080000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G300800 chr4B 587060006 587063643 3637 True 6719.0 6719 100.0000 1 3638 1 chr4B.!!$R2 3637
1 TraesCS4B01G300800 chr4B 516501834 516502419 585 True 499.0 499 82.2530 2879 3456 1 chr4B.!!$R1 577
2 TraesCS4B01G300800 chr3D 153850588 153853717 3129 False 1662.5 3016 86.8320 1 3456 2 chr3D.!!$F1 3455
3 TraesCS4B01G300800 chr3D 289696413 289697839 1426 True 1304.0 1304 83.1820 1 1432 1 chr3D.!!$R2 1431
4 TraesCS4B01G300800 chr3D 289690095 289691722 1627 True 1247.0 1247 80.5960 1828 3463 1 chr3D.!!$R1 1635
5 TraesCS4B01G300800 chr5A 91534046 91537015 2969 False 2695.0 2695 83.1290 449 3444 1 chr5A.!!$F1 2995
6 TraesCS4B01G300800 chr1A 148857615 148861041 3426 True 1077.0 1162 79.6325 32 3443 2 chr1A.!!$R1 3411
7 TraesCS4B01G300800 chr7A 179172934 179174690 1756 False 1109.0 1109 78.2800 1687 3463 1 chr7A.!!$F1 1776
8 TraesCS4B01G300800 chr7A 202154090 202157096 3006 True 1028.5 1085 81.0165 454 3443 2 chr7A.!!$R1 2989
9 TraesCS4B01G300800 chr6B 67948681 67949864 1183 False 937.0 937 81.0450 2265 3445 1 chr6B.!!$F1 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.036671 GTTTTCGGGAGGGTCATCGT 60.037 55.0 0.0 0.0 0.0 3.73 F
1405 1407 0.038890 TTCGGGCAATGGTGAATGGA 59.961 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2094 0.030092 TTCCCCCTCCTGGATCGAAT 60.030 55.0 0.00 0.0 35.39 3.34 R
3005 3084 0.041238 CCTCCCGAGGGCCATAGATA 59.959 60.0 6.18 0.0 44.87 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.343421 GCGGTTTCCTCGCGTTGT 61.343 61.111 5.77 0.00 43.71 3.32
100 101 1.333636 CCTCGGTCTCATCCAGGCTT 61.334 60.000 0.00 0.00 0.00 4.35
103 104 0.103937 CGGTCTCATCCAGGCTTCTC 59.896 60.000 0.00 0.00 0.00 2.87
145 146 4.116585 TCCGCCTCTCCGAGCTCT 62.117 66.667 12.85 0.00 0.00 4.09
151 152 3.429080 CTCTCCGAGCTCTGCTGGC 62.429 68.421 12.85 0.00 39.88 4.85
157 158 2.039299 AGCTCTGCTGGCTCCTCT 59.961 61.111 1.64 0.00 37.57 3.69
164 165 3.714001 CTGGCTCCTCTGCTGGCA 61.714 66.667 0.00 0.00 35.07 4.92
168 169 4.383861 CTCCTCTGCTGGCACGCA 62.384 66.667 10.43 10.43 36.57 5.24
265 266 4.148825 CGCAAGGCCCTCTAGCGT 62.149 66.667 14.67 0.00 43.08 5.07
370 371 2.822399 GACATCCCGCCGGATCTT 59.178 61.111 5.05 0.00 46.77 2.40
374 375 0.463654 CATCCCGCCGGATCTTTTCA 60.464 55.000 5.05 0.00 46.77 2.69
376 377 1.220749 CCCGCCGGATCTTTTCAGA 59.779 57.895 5.05 0.00 0.00 3.27
379 380 1.281899 CGCCGGATCTTTTCAGACTC 58.718 55.000 5.05 0.00 0.00 3.36
403 404 0.841289 TCAAGTGTTTTCGGGAGGGT 59.159 50.000 0.00 0.00 0.00 4.34
409 410 0.036671 GTTTTCGGGAGGGTCATCGT 60.037 55.000 0.00 0.00 0.00 3.73
411 412 1.610554 TTTCGGGAGGGTCATCGTCC 61.611 60.000 0.00 0.00 46.71 4.79
420 421 2.025226 AGGGTCATCGTCCAGAAGACTA 60.025 50.000 4.00 0.00 44.48 2.59
436 437 0.396811 ACTACACCTTTCAGCCGCTT 59.603 50.000 0.00 0.00 0.00 4.68
474 475 1.002134 AAGGGCACATCTGTTCGGG 60.002 57.895 0.00 0.00 0.00 5.14
500 501 3.637273 GCCCCAGGAGTCCACGTT 61.637 66.667 12.86 0.00 0.00 3.99
538 539 1.103398 GCGATGCCATGGCTAAGGTT 61.103 55.000 35.53 14.37 42.51 3.50
614 615 3.817826 ACTAGGCAAGTCTCCCCTT 57.182 52.632 0.00 0.00 30.33 3.95
693 695 2.125147 GCTGCGGCCAGTGATGTA 60.125 61.111 6.12 0.00 41.26 2.29
711 713 1.065701 GTATGTGTCATCTCGCGGACT 59.934 52.381 6.13 0.00 35.11 3.85
733 735 1.115467 GGAGATGGACGACATGGAGT 58.885 55.000 0.00 0.00 40.72 3.85
747 749 2.263540 GAGTGGCGCCTCCGTTTA 59.736 61.111 29.70 1.01 37.80 2.01
750 752 3.702048 TGGCGCCTCCGTTTAGCT 61.702 61.111 29.70 0.00 37.80 3.32
774 776 1.337384 TGGCATACATCGGTGGCTCT 61.337 55.000 0.00 0.00 41.07 4.09
776 778 0.390860 GCATACATCGGTGGCTCTCT 59.609 55.000 0.00 0.00 0.00 3.10
798 800 0.874390 CGGTGGTTTCATGTGTGGAG 59.126 55.000 0.00 0.00 0.00 3.86
846 848 1.685355 GCAACCCCTGGCACAAGTTT 61.685 55.000 0.00 0.00 38.70 2.66
861 863 5.581605 CACAAGTTTTCTGTGCACAAGTAT 58.418 37.500 21.98 2.04 0.00 2.12
864 866 5.424121 AGTTTTCTGTGCACAAGTATCAC 57.576 39.130 21.98 12.38 0.00 3.06
868 870 0.394938 TGTGCACAAGTATCACCCGT 59.605 50.000 19.28 0.00 0.00 5.28
873 875 3.196901 TGCACAAGTATCACCCGTAAGAT 59.803 43.478 0.00 0.00 43.02 2.40
879 881 5.952347 AGTATCACCCGTAAGATTTCCTT 57.048 39.130 0.00 0.00 43.02 3.36
894 896 2.357517 CTTGTGGTCTTCGCGGCT 60.358 61.111 6.13 0.00 0.00 5.52
903 905 3.832720 CTTCGCGGCTCCGGATCTC 62.833 68.421 3.57 0.00 40.19 2.75
941 943 1.065926 AGCCAACTCGATTGAGCATGA 60.066 47.619 10.09 0.00 46.69 3.07
942 944 1.945394 GCCAACTCGATTGAGCATGAT 59.055 47.619 10.09 0.00 46.69 2.45
951 953 5.872635 TCGATTGAGCATGATTTCTTCAAC 58.127 37.500 0.00 0.00 38.03 3.18
953 955 5.510674 CGATTGAGCATGATTTCTTCAACAC 59.489 40.000 0.00 0.00 38.03 3.32
975 977 2.045045 TTCAGGCCATGGCTTCGG 60.045 61.111 34.70 20.14 41.60 4.30
1004 1006 1.302431 CGGTGACCAAGGTGATGCA 60.302 57.895 1.11 0.00 0.00 3.96
1012 1014 2.040813 ACCAAGGTGATGCATTCTCAGT 59.959 45.455 0.00 0.00 0.00 3.41
1035 1037 0.620556 ACCTGATGATTGAGGGCGTT 59.379 50.000 0.00 0.00 33.16 4.84
1046 1048 2.438434 GGGCGTTCCATCCCACAG 60.438 66.667 0.00 0.00 42.18 3.66
1064 1066 4.039357 CTGGACGCGAGACACGGT 62.039 66.667 15.93 0.00 42.83 4.83
1101 1103 2.203266 GGCTGCCTGGTGGATAGC 60.203 66.667 12.43 0.00 41.38 2.97
1107 1109 1.524621 CCTGGTGGATAGCCTTGCG 60.525 63.158 0.00 0.00 34.57 4.85
1131 1133 3.959991 GACAGCCAGCCGGGAAGAC 62.960 68.421 2.18 0.00 40.01 3.01
1137 1139 1.684049 CAGCCGGGAAGACCTCTCT 60.684 63.158 2.18 0.00 36.97 3.10
1149 1151 2.825532 AGACCTCTCTCTGTTCAAGCTC 59.174 50.000 0.00 0.00 0.00 4.09
1206 1208 1.903404 CAAGAGGTTGTGGGTGCCC 60.903 63.158 0.00 0.00 0.00 5.36
1298 1300 2.040145 TCATCCACATTGGCAGAGTCAA 59.960 45.455 0.00 0.00 37.47 3.18
1307 1309 1.421268 TGGCAGAGTCAAGGAACATGT 59.579 47.619 0.00 0.00 0.00 3.21
1311 1313 1.168714 GAGTCAAGGAACATGTGGGC 58.831 55.000 0.00 0.00 0.00 5.36
1341 1343 3.011635 GCTTCGCCCTCTGAGCTCA 62.012 63.158 17.19 17.19 0.00 4.26
1405 1407 0.038890 TTCGGGCAATGGTGAATGGA 59.961 50.000 0.00 0.00 0.00 3.41
1410 1412 1.064017 GGCAATGGTGAATGGAGGGTA 60.064 52.381 0.00 0.00 0.00 3.69
1432 1434 4.360964 CGTGGACGGGCGGTGTTA 62.361 66.667 1.11 0.00 35.37 2.41
1434 1436 4.382320 TGGACGGGCGGTGTTAGC 62.382 66.667 1.11 0.00 0.00 3.09
1548 1567 2.597340 CCGATGCCCATGGGAGTT 59.403 61.111 36.00 17.58 38.77 3.01
1551 1570 2.042639 ATGCCCATGGGAGTTGCC 60.043 61.111 36.00 15.94 37.50 4.52
1559 1578 2.203337 GGGAGTTGCCAGTGTGCA 60.203 61.111 2.57 2.57 40.07 4.57
1587 1606 2.273123 CAGCCTATGTGCCCTGCA 59.727 61.111 0.00 0.00 35.60 4.41
1588 1607 1.152819 CAGCCTATGTGCCCTGCAT 60.153 57.895 0.00 0.00 41.91 3.96
1599 1618 4.758251 CCTGCATCGCCGGTGTCA 62.758 66.667 16.01 10.60 0.00 3.58
1602 1621 3.499737 GCATCGCCGGTGTCAAGG 61.500 66.667 16.01 0.00 0.00 3.61
1638 1657 4.988598 ACTGCGGTTGTCAGCCCG 62.989 66.667 8.29 8.29 46.90 6.13
1645 1664 1.070786 GTTGTCAGCCCGAACAGGA 59.929 57.895 0.00 0.00 45.00 3.86
1654 1673 3.307906 CGAACAGGACGGTGGGGA 61.308 66.667 0.00 0.00 0.00 4.81
1707 1726 3.267860 GCCTCTGCGGAGATTGCG 61.268 66.667 24.60 7.74 41.86 4.85
1726 1745 1.379710 CCAATGGTCGGATTGGCCA 60.380 57.895 0.00 0.00 44.56 5.36
1736 1755 1.685148 GGATTGGCCACAGAAGATCC 58.315 55.000 14.63 14.63 36.34 3.36
1783 1802 4.601794 TGGTGGCAGGGGCAGTTG 62.602 66.667 0.00 0.00 43.71 3.16
1806 1825 1.953311 GCTTTATCCCCTGCGTTGGAA 60.953 52.381 0.00 0.00 33.54 3.53
1809 1828 0.916086 TATCCCCTGCGTTGGAACAT 59.084 50.000 0.00 0.00 39.30 2.71
1822 1841 0.967380 GGAACATGAGTTGCCCCCTG 60.967 60.000 0.00 0.00 39.86 4.45
1872 1948 1.203994 TCGGTCTTGGAAGAATCGGTC 59.796 52.381 11.18 0.00 36.68 4.79
1873 1949 1.739371 CGGTCTTGGAAGAATCGGTCC 60.739 57.143 0.00 0.00 36.68 4.46
1895 1971 3.402681 CGAGGATGGTGCCAGGGT 61.403 66.667 0.00 0.00 0.00 4.34
1896 1972 2.971598 CGAGGATGGTGCCAGGGTT 61.972 63.158 0.00 0.00 0.00 4.11
1900 1976 1.907807 GATGGTGCCAGGGTTTGCA 60.908 57.895 0.00 0.00 34.54 4.08
1904 1980 1.067916 GTGCCAGGGTTTGCAACAG 59.932 57.895 0.00 0.00 39.57 3.16
1911 1987 1.444119 GGGTTTGCAACAGAGCGACA 61.444 55.000 0.00 0.00 37.31 4.35
1931 2007 3.813724 GGGGACTGGCCTGGATGG 61.814 72.222 14.82 0.00 36.66 3.51
1933 2009 2.692368 GGACTGGCCTGGATGGGA 60.692 66.667 14.82 0.00 36.00 4.37
1937 2013 3.016971 TGGCCTGGATGGGACTGG 61.017 66.667 3.32 0.00 34.90 4.00
1941 2017 2.061790 GCCTGGATGGGACTGGGATC 62.062 65.000 0.00 0.00 36.00 3.36
1943 2019 0.401105 CTGGATGGGACTGGGATCCT 60.401 60.000 12.58 0.00 38.95 3.24
1949 2025 1.003573 GGACTGGGATCCTGGAGGT 59.996 63.158 12.58 3.68 35.68 3.85
1967 2043 2.047179 GACCGGTCAAGTCCTGGC 60.047 66.667 29.75 0.00 0.00 4.85
1973 2049 2.206900 TCAAGTCCTGGCCCCTGA 59.793 61.111 0.00 0.00 0.00 3.86
1976 2052 1.083706 AAGTCCTGGCCCCTGAGAT 59.916 57.895 0.00 0.00 0.00 2.75
1980 2056 2.679092 CTGGCCCCTGAGATTGCA 59.321 61.111 0.00 0.00 0.00 4.08
2015 2091 1.220749 GCGATGTAGGGCTGGTTGA 59.779 57.895 0.00 0.00 0.00 3.18
2018 2094 1.204146 GATGTAGGGCTGGTTGAGGA 58.796 55.000 0.00 0.00 0.00 3.71
2023 2099 0.909610 AGGGCTGGTTGAGGATTCGA 60.910 55.000 0.00 0.00 0.00 3.71
2037 2113 0.030092 ATTCGATCCAGGAGGGGGAA 60.030 55.000 0.00 0.00 38.09 3.97
2079 2155 1.238625 TGGTGGAAATTTCGTCCGGC 61.239 55.000 18.66 4.91 38.06 6.13
2082 2158 2.682876 GGAAATTTCGTCCGGCGCA 61.683 57.895 10.83 0.17 41.07 6.09
2102 2178 2.436646 GCTGCATGCCGTGGTAGT 60.437 61.111 16.68 0.00 35.15 2.73
2124 2200 2.731571 GGTGCAGTCGGATAGGGCA 61.732 63.158 0.00 0.00 0.00 5.36
2127 2203 2.435693 GCAGTCGGATAGGGCAGGT 61.436 63.158 0.00 0.00 0.00 4.00
2179 2255 0.966875 GGTTGGCTGCATGGATGTGA 60.967 55.000 0.50 0.00 0.00 3.58
2180 2256 1.108776 GTTGGCTGCATGGATGTGAT 58.891 50.000 0.50 0.00 0.00 3.06
2183 2259 1.770061 TGGCTGCATGGATGTGATCTA 59.230 47.619 0.50 0.00 0.00 1.98
2244 2320 3.071459 GCACGTTCACGCCGATCTG 62.071 63.158 0.00 0.00 44.43 2.90
2245 2321 2.809601 ACGTTCACGCCGATCTGC 60.810 61.111 0.00 0.00 44.43 4.26
2251 2327 4.074526 ACGCCGATCTGCTGCTGT 62.075 61.111 7.56 0.00 0.00 4.40
2253 2329 3.260483 GCCGATCTGCTGCTGTCG 61.260 66.667 17.53 17.53 0.00 4.35
2262 2338 1.811679 GCTGCTGTCGCCTAAGGAC 60.812 63.158 0.00 0.00 34.43 3.85
2263 2339 1.517257 CTGCTGTCGCCTAAGGACG 60.517 63.158 0.00 0.00 37.22 4.79
2266 2342 0.802607 GCTGTCGCCTAAGGACGAAG 60.803 60.000 0.00 0.00 40.47 3.79
2318 2394 2.481952 CTGGACTTTTGAAGAAGCTCGG 59.518 50.000 0.00 0.00 0.00 4.63
2321 2397 1.202818 ACTTTTGAAGAAGCTCGGCCT 60.203 47.619 0.00 0.00 0.00 5.19
2325 2401 0.614979 TGAAGAAGCTCGGCCTACCT 60.615 55.000 0.00 0.00 0.00 3.08
2358 2434 1.444119 TTGAAGCTGTCCGTGGCAAC 61.444 55.000 0.00 0.00 0.00 4.17
2406 2482 4.942481 ACGCGTGCTTCGTCTGCA 62.942 61.111 12.93 0.00 42.13 4.41
2415 2491 3.300934 TTCGTCTGCATGCGCTCCT 62.301 57.895 14.09 0.00 39.64 3.69
2425 2501 0.103208 ATGCGCTCCTAGAAAGACCG 59.897 55.000 9.73 0.00 0.00 4.79
2437 2513 0.745128 AAAGACCGGTGCAACGACAA 60.745 50.000 28.95 0.00 38.12 3.18
2501 2577 1.892819 CTGGCGGTCACAGATGAGGT 61.893 60.000 0.00 0.00 38.20 3.85
2502 2578 1.448540 GGCGGTCACAGATGAGGTG 60.449 63.158 0.00 0.00 34.75 4.00
2520 2596 2.979676 CTTGGTCAGCTGCGGCAA 60.980 61.111 21.93 4.10 41.70 4.52
2547 2623 4.037413 TCCCCCATCCAGGAGCCA 62.037 66.667 0.00 0.00 41.22 4.75
2557 2633 1.483595 CCAGGAGCCACAACTGAGGA 61.484 60.000 0.00 0.00 34.21 3.71
2565 2641 1.079819 ACAACTGAGGACGATGGCG 60.080 57.895 0.00 0.00 44.79 5.69
2598 2674 0.253327 AGGCGGTCCCTTTTGATCTC 59.747 55.000 0.00 0.00 43.06 2.75
2709 2785 0.806241 GTTGGTGTGTTGGAACGTGT 59.194 50.000 0.00 0.00 0.00 4.49
2724 2800 1.078709 CGTGTGTGGCCTCAATAGTG 58.921 55.000 9.53 0.00 0.00 2.74
2776 2852 1.606903 GATACGACTCACCCCTCGAT 58.393 55.000 0.00 0.00 33.96 3.59
2826 2902 5.057149 GCCTGTATCGATACTTTCATGGTT 58.943 41.667 30.20 0.00 34.41 3.67
2830 2906 7.331934 CCTGTATCGATACTTTCATGGTTATGG 59.668 40.741 30.20 12.70 33.47 2.74
2875 2951 3.090790 GGGTTTTTCTATTTACCGGCCA 58.909 45.455 0.00 0.00 0.00 5.36
2876 2952 3.702548 GGGTTTTTCTATTTACCGGCCAT 59.297 43.478 0.00 0.00 0.00 4.40
2899 2975 1.570024 ACACTAGGGGAGGAGTCCTAC 59.430 57.143 13.73 13.73 43.36 3.18
2901 2977 2.245287 CACTAGGGGAGGAGTCCTACTT 59.755 54.545 21.30 12.14 43.36 2.24
2904 2980 0.617820 GGGGAGGAGTCCTACTTGCA 60.618 60.000 21.30 0.00 43.36 4.08
2908 2984 0.543749 AGGAGTCCTACTTGCATGGC 59.456 55.000 10.94 0.00 28.47 4.40
2931 3007 1.000052 TCGACGTTGGTTAGCATCACA 60.000 47.619 2.20 0.00 0.00 3.58
2941 3017 1.877637 TAGCATCACAAACTGCGTGT 58.122 45.000 0.00 0.00 43.17 4.49
2996 3075 4.722700 GGATGGTGCGCCTGGTGT 62.723 66.667 18.96 0.00 35.27 4.16
3003 3082 2.031163 GCGCCTGGTGTCTCACTT 59.969 61.111 9.31 0.00 34.40 3.16
3005 3084 1.668294 CGCCTGGTGTCTCACTTCT 59.332 57.895 0.00 0.00 34.40 2.85
3006 3085 0.888619 CGCCTGGTGTCTCACTTCTA 59.111 55.000 0.00 0.00 34.40 2.10
3085 3164 2.548920 GGAGATCTATTTGTCCTGGCGG 60.549 54.545 0.00 0.00 0.00 6.13
3092 3171 2.058125 TTTGTCCTGGCGGTTGGCTA 62.058 55.000 0.00 0.00 42.94 3.93
3126 3205 1.918262 TCAACATGATCCTCCAAGCCT 59.082 47.619 0.00 0.00 0.00 4.58
3140 3219 3.199946 TCCAAGCCTCGGATAAGAACAAT 59.800 43.478 0.00 0.00 0.00 2.71
3155 3234 3.438087 AGAACAATTCGCTCATTGACAGG 59.562 43.478 10.75 0.00 37.55 4.00
3162 3241 0.940126 GCTCATTGACAGGCGTATGG 59.060 55.000 0.00 0.00 0.00 2.74
3170 3252 6.545666 TCATTGACAGGCGTATGGATAAATTT 59.454 34.615 0.00 0.00 0.00 1.82
3197 3279 3.834231 AGTTTGTTGATAGCAATGGCCTT 59.166 39.130 3.32 0.00 42.56 4.35
3206 3288 1.846439 AGCAATGGCCTTAAGGAGCTA 59.154 47.619 26.21 8.95 42.56 3.32
3242 3324 1.471684 GCCTTCACTTGGAGCAATGAG 59.528 52.381 0.00 0.00 0.00 2.90
3316 3402 1.414158 GAGCTGGAGCACCCATACTA 58.586 55.000 0.00 0.00 45.57 1.82
3349 3435 1.075970 TCTCCACCTCATCCTCGGG 60.076 63.158 0.00 0.00 0.00 5.14
3350 3436 2.764128 TCCACCTCATCCTCGGGC 60.764 66.667 0.00 0.00 0.00 6.13
3406 3492 1.269517 GCACCCGCAGAAATGTTTCAA 60.270 47.619 8.09 0.00 39.61 2.69
3445 3531 0.397816 AAGCTCGAGGGCTATGAGGT 60.398 55.000 15.58 0.58 42.24 3.85
3457 3545 0.339859 TATGAGGTGGCTGAGGGAGT 59.660 55.000 0.00 0.00 0.00 3.85
3463 3551 2.039624 GGCTGAGGGAGTCCTGGA 59.960 66.667 9.58 0.00 45.05 3.86
3464 3552 1.383803 GGCTGAGGGAGTCCTGGAT 60.384 63.158 9.58 0.00 45.05 3.41
3465 3553 0.105453 GGCTGAGGGAGTCCTGGATA 60.105 60.000 9.58 0.00 45.05 2.59
3466 3554 1.692762 GGCTGAGGGAGTCCTGGATAA 60.693 57.143 9.58 0.00 45.05 1.75
3467 3555 1.691434 GCTGAGGGAGTCCTGGATAAG 59.309 57.143 9.58 0.28 45.05 1.73
3479 3567 3.801034 GGATAAGGGGGTATCCGGA 57.199 57.895 6.61 6.61 40.10 5.14
3480 3568 1.273759 GGATAAGGGGGTATCCGGAC 58.726 60.000 6.12 0.00 40.10 4.79
3481 3569 1.483686 GGATAAGGGGGTATCCGGACA 60.484 57.143 6.12 0.00 40.10 4.02
3482 3570 1.900486 GATAAGGGGGTATCCGGACAG 59.100 57.143 6.12 0.00 36.01 3.51
3483 3571 0.761702 TAAGGGGGTATCCGGACAGC 60.762 60.000 6.12 4.13 36.01 4.40
3484 3572 2.446036 GGGGGTATCCGGACAGCT 60.446 66.667 12.36 0.00 36.01 4.24
3485 3573 2.808206 GGGGGTATCCGGACAGCTG 61.808 68.421 13.48 13.48 36.01 4.24
3486 3574 2.808206 GGGGTATCCGGACAGCTGG 61.808 68.421 19.93 0.00 42.30 4.85
3492 3580 2.504920 TCCGGACAGCTGGACTATG 58.495 57.895 19.93 1.23 44.72 2.23
3493 3581 0.324368 TCCGGACAGCTGGACTATGT 60.324 55.000 19.93 0.00 44.72 2.29
3494 3582 1.064240 TCCGGACAGCTGGACTATGTA 60.064 52.381 19.93 0.00 44.72 2.29
3495 3583 1.067212 CCGGACAGCTGGACTATGTAC 59.933 57.143 19.93 0.00 43.76 2.90
3496 3584 2.025155 CGGACAGCTGGACTATGTACT 58.975 52.381 19.93 0.00 0.00 2.73
3497 3585 2.427453 CGGACAGCTGGACTATGTACTT 59.573 50.000 19.93 0.00 0.00 2.24
3498 3586 3.119101 CGGACAGCTGGACTATGTACTTT 60.119 47.826 19.93 0.00 0.00 2.66
3499 3587 4.184629 GGACAGCTGGACTATGTACTTTG 58.815 47.826 19.93 0.00 0.00 2.77
3500 3588 4.184629 GACAGCTGGACTATGTACTTTGG 58.815 47.826 19.93 0.00 0.00 3.28
3501 3589 2.939103 CAGCTGGACTATGTACTTTGGC 59.061 50.000 5.57 0.00 0.00 4.52
3502 3590 2.092914 AGCTGGACTATGTACTTTGGCC 60.093 50.000 7.96 7.96 0.00 5.36
3503 3591 2.550978 CTGGACTATGTACTTTGGCCG 58.449 52.381 9.89 2.69 0.00 6.13
3504 3592 1.208535 TGGACTATGTACTTTGGCCGG 59.791 52.381 9.89 0.00 0.00 6.13
3505 3593 1.483415 GGACTATGTACTTTGGCCGGA 59.517 52.381 5.05 0.00 0.00 5.14
3506 3594 2.547826 GACTATGTACTTTGGCCGGAC 58.452 52.381 5.05 0.56 0.00 4.79
3507 3595 2.167900 GACTATGTACTTTGGCCGGACT 59.832 50.000 9.82 0.00 0.00 3.85
3508 3596 2.093658 ACTATGTACTTTGGCCGGACTG 60.094 50.000 9.82 0.54 0.00 3.51
3509 3597 0.690762 ATGTACTTTGGCCGGACTGT 59.309 50.000 9.82 7.70 0.00 3.55
3510 3598 0.470766 TGTACTTTGGCCGGACTGTT 59.529 50.000 9.82 0.00 0.00 3.16
3511 3599 0.872388 GTACTTTGGCCGGACTGTTG 59.128 55.000 9.82 0.00 0.00 3.33
3512 3600 0.759959 TACTTTGGCCGGACTGTTGA 59.240 50.000 9.82 0.00 0.00 3.18
3513 3601 0.106918 ACTTTGGCCGGACTGTTGAA 60.107 50.000 9.82 0.00 0.00 2.69
3514 3602 0.310854 CTTTGGCCGGACTGTTGAAC 59.689 55.000 9.82 0.00 0.00 3.18
3515 3603 0.106918 TTTGGCCGGACTGTTGAACT 60.107 50.000 9.82 0.00 0.00 3.01
3516 3604 0.759959 TTGGCCGGACTGTTGAACTA 59.240 50.000 9.82 0.00 0.00 2.24
3517 3605 0.981183 TGGCCGGACTGTTGAACTAT 59.019 50.000 9.82 0.00 0.00 2.12
3518 3606 1.338674 TGGCCGGACTGTTGAACTATG 60.339 52.381 9.82 0.00 0.00 2.23
3519 3607 1.066430 GGCCGGACTGTTGAACTATGA 60.066 52.381 5.05 0.00 0.00 2.15
3520 3608 2.614481 GGCCGGACTGTTGAACTATGAA 60.614 50.000 5.05 0.00 0.00 2.57
3521 3609 2.673368 GCCGGACTGTTGAACTATGAAG 59.327 50.000 5.05 0.00 0.00 3.02
3522 3610 3.616560 GCCGGACTGTTGAACTATGAAGA 60.617 47.826 5.05 0.00 0.00 2.87
3523 3611 4.759782 CCGGACTGTTGAACTATGAAGAT 58.240 43.478 0.00 0.00 0.00 2.40
3524 3612 5.681437 GCCGGACTGTTGAACTATGAAGATA 60.681 44.000 5.05 0.00 0.00 1.98
3525 3613 5.749109 CCGGACTGTTGAACTATGAAGATAC 59.251 44.000 0.00 0.00 0.00 2.24
3526 3614 6.330278 CGGACTGTTGAACTATGAAGATACA 58.670 40.000 0.00 0.00 0.00 2.29
3527 3615 6.811665 CGGACTGTTGAACTATGAAGATACAA 59.188 38.462 0.00 0.00 0.00 2.41
3528 3616 7.009631 CGGACTGTTGAACTATGAAGATACAAG 59.990 40.741 0.00 0.00 0.00 3.16
3529 3617 8.035394 GGACTGTTGAACTATGAAGATACAAGA 58.965 37.037 0.00 0.00 0.00 3.02
3530 3618 9.593134 GACTGTTGAACTATGAAGATACAAGAT 57.407 33.333 0.00 0.00 0.00 2.40
3531 3619 9.950496 ACTGTTGAACTATGAAGATACAAGATT 57.050 29.630 0.00 0.00 0.00 2.40
3533 3621 9.942850 TGTTGAACTATGAAGATACAAGATTGA 57.057 29.630 0.00 0.00 0.00 2.57
3541 3629 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
3542 3630 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
3543 3631 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
3544 3632 6.334202 AGATACAAGATTGAAGACTTCGTCC 58.666 40.000 10.56 2.18 32.18 4.79
3545 3633 3.665190 ACAAGATTGAAGACTTCGTCCC 58.335 45.455 10.56 0.53 32.18 4.46
3546 3634 2.656560 AGATTGAAGACTTCGTCCCG 57.343 50.000 10.56 0.00 32.18 5.14
3547 3635 1.893801 AGATTGAAGACTTCGTCCCGT 59.106 47.619 10.56 0.00 32.18 5.28
3548 3636 1.993370 GATTGAAGACTTCGTCCCGTG 59.007 52.381 10.56 0.00 32.18 4.94
3549 3637 0.748450 TTGAAGACTTCGTCCCGTGT 59.252 50.000 10.56 0.00 32.18 4.49
3550 3638 0.313043 TGAAGACTTCGTCCCGTGTC 59.687 55.000 10.56 0.00 32.18 3.67
3551 3639 0.388263 GAAGACTTCGTCCCGTGTCC 60.388 60.000 0.00 0.00 34.39 4.02
3552 3640 2.126580 GACTTCGTCCCGTGTCCG 60.127 66.667 0.00 0.00 0.00 4.79
3566 3654 3.440023 TCCGGATGGGACTCTCCT 58.560 61.111 0.00 0.00 40.94 3.69
3567 3655 1.704082 TCCGGATGGGACTCTCCTT 59.296 57.895 0.00 0.00 40.94 3.36
3568 3656 0.042731 TCCGGATGGGACTCTCCTTT 59.957 55.000 0.00 0.00 40.94 3.11
3569 3657 0.179000 CCGGATGGGACTCTCCTTTG 59.821 60.000 0.00 0.00 38.47 2.77
3570 3658 0.462759 CGGATGGGACTCTCCTTTGC 60.463 60.000 0.00 0.00 36.57 3.68
3571 3659 0.462759 GGATGGGACTCTCCTTTGCG 60.463 60.000 0.00 0.00 36.57 4.85
3572 3660 0.250513 GATGGGACTCTCCTTTGCGT 59.749 55.000 0.00 0.00 36.57 5.24
3573 3661 0.036010 ATGGGACTCTCCTTTGCGTG 60.036 55.000 0.00 0.00 36.57 5.34
3574 3662 1.376037 GGGACTCTCCTTTGCGTGG 60.376 63.158 0.00 0.00 36.57 4.94
3575 3663 1.671742 GGACTCTCCTTTGCGTGGA 59.328 57.895 0.00 0.00 32.53 4.02
3576 3664 0.034896 GGACTCTCCTTTGCGTGGAA 59.965 55.000 0.00 0.00 32.53 3.53
3577 3665 1.433534 GACTCTCCTTTGCGTGGAAG 58.566 55.000 0.00 0.00 32.61 3.46
3578 3666 0.035458 ACTCTCCTTTGCGTGGAAGG 59.965 55.000 7.12 7.12 44.06 3.46
3587 3675 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
3594 3682 2.100991 GGCAAGCTTGGCGATTCG 59.899 61.111 33.68 4.49 43.97 3.34
3595 3683 2.398554 GGCAAGCTTGGCGATTCGA 61.399 57.895 33.68 0.00 43.97 3.71
3596 3684 1.501741 GCAAGCTTGGCGATTCGAA 59.498 52.632 27.10 0.00 0.00 3.71
3597 3685 0.099436 GCAAGCTTGGCGATTCGAAT 59.901 50.000 27.10 11.20 0.00 3.34
3598 3686 1.818850 CAAGCTTGGCGATTCGAATG 58.181 50.000 16.96 9.13 0.00 2.67
3599 3687 1.398041 CAAGCTTGGCGATTCGAATGA 59.602 47.619 16.96 0.00 0.00 2.57
3600 3688 1.959042 AGCTTGGCGATTCGAATGAT 58.041 45.000 16.96 0.00 0.00 2.45
3601 3689 3.111853 AGCTTGGCGATTCGAATGATA 57.888 42.857 16.96 0.00 0.00 2.15
3602 3690 3.062763 AGCTTGGCGATTCGAATGATAG 58.937 45.455 16.96 6.67 0.00 2.08
3603 3691 3.059884 GCTTGGCGATTCGAATGATAGA 58.940 45.455 16.96 0.00 0.00 1.98
3604 3692 3.681897 GCTTGGCGATTCGAATGATAGAT 59.318 43.478 16.96 0.00 0.00 1.98
3605 3693 4.864806 GCTTGGCGATTCGAATGATAGATA 59.135 41.667 16.96 0.00 0.00 1.98
3606 3694 5.521735 GCTTGGCGATTCGAATGATAGATAT 59.478 40.000 16.96 0.00 0.00 1.63
3607 3695 6.292061 GCTTGGCGATTCGAATGATAGATATC 60.292 42.308 16.96 0.00 0.00 1.63
3608 3696 5.592054 TGGCGATTCGAATGATAGATATCC 58.408 41.667 16.96 3.78 31.71 2.59
3609 3697 5.360999 TGGCGATTCGAATGATAGATATCCT 59.639 40.000 16.96 0.00 31.71 3.24
3610 3698 6.127338 TGGCGATTCGAATGATAGATATCCTT 60.127 38.462 16.96 0.00 31.71 3.36
3611 3699 6.419413 GGCGATTCGAATGATAGATATCCTTC 59.581 42.308 16.96 7.44 35.40 3.46
3612 3700 7.199766 GCGATTCGAATGATAGATATCCTTCT 58.800 38.462 16.96 0.00 36.09 2.85
3613 3701 7.378461 GCGATTCGAATGATAGATATCCTTCTC 59.622 40.741 16.96 0.00 36.09 2.87
3614 3702 8.620416 CGATTCGAATGATAGATATCCTTCTCT 58.380 37.037 16.96 0.00 36.09 3.10
3615 3703 9.734620 GATTCGAATGATAGATATCCTTCTCTG 57.265 37.037 16.96 2.68 36.09 3.35
3616 3704 8.642935 TTCGAATGATAGATATCCTTCTCTGT 57.357 34.615 12.86 0.00 36.09 3.41
3617 3705 9.740710 TTCGAATGATAGATATCCTTCTCTGTA 57.259 33.333 12.86 0.00 36.09 2.74
3618 3706 9.740710 TCGAATGATAGATATCCTTCTCTGTAA 57.259 33.333 12.86 0.00 36.09 2.41
3619 3707 9.781834 CGAATGATAGATATCCTTCTCTGTAAC 57.218 37.037 12.86 0.00 36.09 2.50
3621 3709 7.689446 TGATAGATATCCTTCTCTGTAACCG 57.311 40.000 0.00 0.00 31.71 4.44
3622 3710 7.459234 TGATAGATATCCTTCTCTGTAACCGA 58.541 38.462 0.00 0.00 31.71 4.69
3623 3711 7.390996 TGATAGATATCCTTCTCTGTAACCGAC 59.609 40.741 0.00 0.00 31.71 4.79
3624 3712 5.697067 AGATATCCTTCTCTGTAACCGACT 58.303 41.667 0.00 0.00 0.00 4.18
3625 3713 5.766174 AGATATCCTTCTCTGTAACCGACTC 59.234 44.000 0.00 0.00 0.00 3.36
3626 3714 3.436577 TCCTTCTCTGTAACCGACTCT 57.563 47.619 0.00 0.00 0.00 3.24
3627 3715 3.082548 TCCTTCTCTGTAACCGACTCTG 58.917 50.000 0.00 0.00 0.00 3.35
3628 3716 2.820787 CCTTCTCTGTAACCGACTCTGT 59.179 50.000 0.00 0.00 0.00 3.41
3629 3717 3.366476 CCTTCTCTGTAACCGACTCTGTG 60.366 52.174 0.00 0.00 0.00 3.66
3630 3718 2.860009 TCTCTGTAACCGACTCTGTGT 58.140 47.619 0.00 0.00 0.00 3.72
3631 3719 4.011966 TCTCTGTAACCGACTCTGTGTA 57.988 45.455 0.00 0.00 0.00 2.90
3632 3720 4.392047 TCTCTGTAACCGACTCTGTGTAA 58.608 43.478 0.00 0.00 0.00 2.41
3633 3721 4.214971 TCTCTGTAACCGACTCTGTGTAAC 59.785 45.833 0.00 0.00 37.35 2.50
3634 3722 3.254166 TCTGTAACCGACTCTGTGTAACC 59.746 47.826 0.00 0.00 34.36 2.85
3635 3723 2.297033 TGTAACCGACTCTGTGTAACCC 59.703 50.000 0.00 0.00 34.36 4.11
3636 3724 1.713297 AACCGACTCTGTGTAACCCT 58.287 50.000 0.00 0.00 34.36 4.34
3637 3725 2.592102 ACCGACTCTGTGTAACCCTA 57.408 50.000 0.00 0.00 34.36 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.077556 GGGCTGGAGGCTCGAGAA 61.078 66.667 27.91 4.34 41.46 2.87
136 137 3.456365 GAGCCAGCAGAGCTCGGA 61.456 66.667 18.66 0.00 46.58 4.55
145 146 3.714001 CCAGCAGAGGAGCCAGCA 61.714 66.667 0.00 0.00 34.23 4.41
151 152 4.383861 TGCGTGCCAGCAGAGGAG 62.384 66.667 0.00 0.00 42.92 3.69
181 182 4.864334 GGATCCAGGGCTGCCACG 62.864 72.222 22.05 10.35 0.00 4.94
370 371 4.142609 ACACTTGAAGCAGAGTCTGAAA 57.857 40.909 24.55 10.41 32.44 2.69
374 375 3.557595 CGAAAACACTTGAAGCAGAGTCT 59.442 43.478 0.00 0.00 0.00 3.24
376 377 2.614057 CCGAAAACACTTGAAGCAGAGT 59.386 45.455 0.00 0.00 0.00 3.24
379 380 1.946768 TCCCGAAAACACTTGAAGCAG 59.053 47.619 0.00 0.00 0.00 4.24
409 410 3.006967 GCTGAAAGGTGTAGTCTTCTGGA 59.993 47.826 0.00 0.00 0.00 3.86
411 412 3.330267 GGCTGAAAGGTGTAGTCTTCTG 58.670 50.000 0.00 0.00 0.00 3.02
412 413 2.028930 CGGCTGAAAGGTGTAGTCTTCT 60.029 50.000 0.00 0.00 0.00 2.85
420 421 2.032981 CAAAGCGGCTGAAAGGTGT 58.967 52.632 1.81 0.00 0.00 4.16
685 687 3.711086 GCGAGATGACACATACATCACT 58.289 45.455 0.00 0.00 44.29 3.41
693 695 0.101399 GAGTCCGCGAGATGACACAT 59.899 55.000 8.23 0.00 33.89 3.21
711 713 1.391933 CCATGTCGTCCATCTCCGGA 61.392 60.000 2.93 2.93 0.00 5.14
733 735 3.702048 AGCTAAACGGAGGCGCCA 61.702 61.111 31.54 4.35 35.94 5.69
745 747 2.741553 CGATGTATGCCACCACAGCTAA 60.742 50.000 0.00 0.00 0.00 3.09
747 749 0.462581 CGATGTATGCCACCACAGCT 60.463 55.000 0.00 0.00 0.00 4.24
750 752 0.392327 CACCGATGTATGCCACCACA 60.392 55.000 0.00 0.00 0.00 4.17
774 776 0.888736 CACATGAAACCACCGGCAGA 60.889 55.000 0.00 0.00 0.00 4.26
776 778 1.152860 ACACATGAAACCACCGGCA 60.153 52.632 0.00 0.00 0.00 5.69
819 821 3.688159 CAGGGGTTGCCAAGCTGC 61.688 66.667 6.59 0.00 0.00 5.25
825 827 4.149019 TTGTGCCAGGGGTTGCCA 62.149 61.111 0.00 0.00 0.00 4.92
830 832 0.261696 AGAAAACTTGTGCCAGGGGT 59.738 50.000 0.00 0.00 0.00 4.95
846 848 2.778299 GGGTGATACTTGTGCACAGAA 58.222 47.619 20.59 9.87 34.33 3.02
861 863 3.558321 CCACAAGGAAATCTTACGGGTGA 60.558 47.826 0.00 0.00 36.89 4.02
864 866 3.007635 GACCACAAGGAAATCTTACGGG 58.992 50.000 0.00 0.00 38.69 5.28
868 870 4.000988 GCGAAGACCACAAGGAAATCTTA 58.999 43.478 0.00 0.00 38.69 2.10
873 875 0.882927 CCGCGAAGACCACAAGGAAA 60.883 55.000 8.23 0.00 38.69 3.13
879 881 4.373116 GGAGCCGCGAAGACCACA 62.373 66.667 8.23 0.00 0.00 4.17
919 921 1.300971 TGCTCAATCGAGTTGGCTGC 61.301 55.000 8.01 0.00 41.71 5.25
931 933 5.479375 AGGTGTTGAAGAAATCATGCTCAAT 59.521 36.000 0.00 0.00 38.03 2.57
985 987 1.003839 GCATCACCTTGGTCACCGA 60.004 57.895 0.00 0.00 0.00 4.69
1012 1014 1.064463 GCCCTCAATCATCAGGTCCAA 60.064 52.381 0.00 0.00 0.00 3.53
1121 1123 1.380650 AGAGAGAGGTCTTCCCGGC 60.381 63.158 0.00 0.00 38.74 6.13
1131 1133 1.135141 CGGAGCTTGAACAGAGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
1137 1139 2.347490 GCCCGGAGCTTGAACAGA 59.653 61.111 0.73 0.00 38.99 3.41
1164 1166 2.427753 GGCACCTCATCGGGATCC 59.572 66.667 1.92 1.92 36.97 3.36
1206 1208 2.046892 CCAACCACCTCTGGCTCG 60.047 66.667 0.00 0.00 42.08 5.03
1269 1271 3.519107 TGCCAATGTGGATGAGAGTCTTA 59.481 43.478 0.00 0.00 40.96 2.10
1298 1300 4.047125 CCGGGCCCACATGTTCCT 62.047 66.667 24.92 0.00 0.00 3.36
1334 1336 2.186125 CGCTGCCATCTGAGCTCA 59.814 61.111 17.19 17.19 32.70 4.26
1335 1337 2.588314 CCGCTGCCATCTGAGCTC 60.588 66.667 6.82 6.82 32.70 4.09
1341 1343 2.898738 CTCTGACCGCTGCCATCT 59.101 61.111 0.00 0.00 0.00 2.90
1368 1370 2.414806 GAAAAGTTGTCGGAGTCCTCC 58.585 52.381 7.77 3.09 46.18 4.30
1379 1381 1.068434 CACCATTGCCCGAAAAGTTGT 59.932 47.619 0.00 0.00 0.00 3.32
1382 1384 1.698506 TTCACCATTGCCCGAAAAGT 58.301 45.000 0.00 0.00 0.00 2.66
1423 1425 3.573491 GGCATCGCTAACACCGCC 61.573 66.667 0.00 0.00 0.00 6.13
1479 1498 1.757118 CCCAAGAGAGCCTGACGATAA 59.243 52.381 0.00 0.00 0.00 1.75
1568 1587 2.593978 CAGGGCACATAGGCTGCT 59.406 61.111 0.00 0.00 43.56 4.24
1569 1588 3.214845 GCAGGGCACATAGGCTGC 61.215 66.667 0.00 0.00 43.56 5.25
1587 1606 3.000819 TCCCTTGACACCGGCGAT 61.001 61.111 9.30 0.00 0.00 4.58
1588 1607 3.691342 CTCCCTTGACACCGGCGA 61.691 66.667 9.30 0.00 0.00 5.54
1631 1650 3.691342 CCGTCCTGTTCGGGCTGA 61.691 66.667 0.00 0.00 43.68 4.26
1638 1657 2.346365 GTCCCCACCGTCCTGTTC 59.654 66.667 0.00 0.00 0.00 3.18
1684 1703 4.463879 CTCCGCAGAGGCCACAGG 62.464 72.222 5.01 4.11 40.77 4.00
1697 1716 2.051804 GACCATTGGCGCAATCTCCG 62.052 60.000 10.83 0.00 31.05 4.63
1712 1731 1.773856 TTCTGTGGCCAATCCGACCA 61.774 55.000 7.24 0.00 37.80 4.02
1783 1802 3.279875 CGCAGGGGATAAAGCGCC 61.280 66.667 2.29 0.00 43.80 6.53
1788 1807 1.074084 TGTTCCAACGCAGGGGATAAA 59.926 47.619 0.00 0.00 35.14 1.40
1801 1820 0.541764 GGGGGCAACTCATGTTCCAA 60.542 55.000 0.00 0.00 41.13 3.53
1822 1841 1.176527 TTGTCCTTATTGCCAGCTGC 58.823 50.000 8.66 4.57 41.77 5.25
1834 1910 2.009774 CGAATCAGCCGATTTGTCCTT 58.990 47.619 0.00 0.00 42.06 3.36
1895 1971 1.220529 CTCTGTCGCTCTGTTGCAAA 58.779 50.000 0.00 0.00 0.00 3.68
1896 1972 0.601046 CCTCTGTCGCTCTGTTGCAA 60.601 55.000 0.00 0.00 0.00 4.08
1900 1976 1.228894 TCCCCTCTGTCGCTCTGTT 60.229 57.895 0.00 0.00 0.00 3.16
1904 1980 2.716017 CCAGTCCCCTCTGTCGCTC 61.716 68.421 0.00 0.00 34.02 5.03
1911 1987 2.965927 ATCCAGGCCAGTCCCCTCT 61.966 63.158 5.01 0.00 34.51 3.69
1931 2007 1.003573 ACCTCCAGGATCCCAGTCC 59.996 63.158 8.55 0.00 38.94 3.85
1933 2009 0.618968 GTCACCTCCAGGATCCCAGT 60.619 60.000 8.55 0.00 38.94 4.00
1937 2013 2.435693 CCGGTCACCTCCAGGATCC 61.436 68.421 2.48 2.48 38.94 3.36
1941 2017 2.172483 CTTGACCGGTCACCTCCAGG 62.172 65.000 36.40 11.65 39.66 4.45
1943 2019 1.458777 ACTTGACCGGTCACCTCCA 60.459 57.895 36.40 20.57 39.66 3.86
1949 2025 2.879233 GCCAGGACTTGACCGGTCA 61.879 63.158 33.23 33.23 37.91 4.02
1967 2043 1.310933 GCACTGTGCAATCTCAGGGG 61.311 60.000 26.70 0.30 44.26 4.79
2003 2079 0.830648 CGAATCCTCAACCAGCCCTA 59.169 55.000 0.00 0.00 0.00 3.53
2018 2094 0.030092 TTCCCCCTCCTGGATCGAAT 60.030 55.000 0.00 0.00 35.39 3.34
2056 2132 1.957877 GGACGAAATTTCCACCACCAA 59.042 47.619 12.54 0.00 32.82 3.67
2057 2133 1.611519 GGACGAAATTTCCACCACCA 58.388 50.000 12.54 0.00 32.82 4.17
2108 2184 2.434843 CCTGCCCTATCCGACTGCA 61.435 63.158 0.00 0.00 0.00 4.41
2109 2185 2.423446 CCTGCCCTATCCGACTGC 59.577 66.667 0.00 0.00 0.00 4.40
2111 2187 2.435693 GCACCTGCCCTATCCGACT 61.436 63.158 0.00 0.00 34.31 4.18
2112 2188 2.109181 GCACCTGCCCTATCCGAC 59.891 66.667 0.00 0.00 34.31 4.79
2124 2200 3.474570 GGCTCGGGATCAGCACCT 61.475 66.667 5.94 0.00 38.77 4.00
2127 2203 2.364186 TCAGGCTCGGGATCAGCA 60.364 61.111 5.94 0.00 38.77 4.41
2179 2255 0.471617 GCATGCTCCACCAGGTAGAT 59.528 55.000 11.37 0.00 35.89 1.98
2180 2256 1.626356 GGCATGCTCCACCAGGTAGA 61.626 60.000 18.92 0.00 35.89 2.59
2183 2259 4.415150 CGGCATGCTCCACCAGGT 62.415 66.667 18.92 0.00 35.89 4.00
2251 2327 0.389426 GCAACTTCGTCCTTAGGCGA 60.389 55.000 12.31 12.31 35.17 5.54
2253 2329 1.079503 CTGCAACTTCGTCCTTAGGC 58.920 55.000 0.00 0.00 0.00 3.93
2288 2364 4.889409 TCTTCAAAAGTCCAGTGCAGAAAT 59.111 37.500 0.00 0.00 0.00 2.17
2318 2394 1.867363 TTCCTTGAGGAGAGGTAGGC 58.133 55.000 0.00 0.00 46.36 3.93
2321 2397 5.571658 GCTTCAATTTCCTTGAGGAGAGGTA 60.572 44.000 0.00 0.00 46.36 3.08
2325 2401 4.202503 ACAGCTTCAATTTCCTTGAGGAGA 60.203 41.667 0.00 0.00 46.36 3.71
2358 2434 0.723414 CAGTATCCTGCGCAACACAG 59.277 55.000 13.05 0.00 34.82 3.66
2376 2452 3.388406 CGCGTGTTACGACGTGCA 61.388 61.111 11.56 6.87 46.05 4.57
2385 2461 1.008194 AGACGAAGCACGCGTGTTA 60.008 52.632 36.80 0.00 46.94 2.41
2395 2471 3.431683 GAGCGCATGCAGACGAAGC 62.432 63.158 19.57 10.94 46.23 3.86
2406 2482 0.103208 CGGTCTTTCTAGGAGCGCAT 59.897 55.000 11.47 0.00 45.09 4.73
2415 2491 0.675083 TCGTTGCACCGGTCTTTCTA 59.325 50.000 2.59 0.00 0.00 2.10
2425 2501 0.582005 GTCTCTGTTGTCGTTGCACC 59.418 55.000 0.00 0.00 0.00 5.01
2437 2513 0.827925 TTGAGGAGCACGGTCTCTGT 60.828 55.000 6.22 0.00 33.70 3.41
2481 2557 1.812922 CTCATCTGTGACCGCCAGC 60.813 63.158 0.00 0.00 0.00 4.85
2520 2596 0.546598 GGATGGGGGAGTCGAACATT 59.453 55.000 0.00 0.00 0.00 2.71
2547 2623 1.079819 CGCCATCGTCCTCAGTTGT 60.080 57.895 0.00 0.00 0.00 3.32
2557 2633 1.656818 CCAAAGATTGCCGCCATCGT 61.657 55.000 0.00 0.00 0.00 3.73
2565 2641 1.512694 CGCCTTCCCAAAGATTGCC 59.487 57.895 0.00 0.00 34.14 4.52
2568 2644 0.323451 GGACCGCCTTCCCAAAGATT 60.323 55.000 0.00 0.00 34.14 2.40
2646 2722 9.722184 CATGATGTCAATCTAGAAACTCCATAT 57.278 33.333 0.00 0.00 33.61 1.78
2709 2785 1.078497 CCGCACTATTGAGGCCACA 60.078 57.895 5.01 0.25 35.71 4.17
2724 2800 3.028366 GCGCCTTCTTCTTCACCGC 62.028 63.158 0.00 0.00 0.00 5.68
2783 2859 4.657969 AGGCAAGCTTAGTCTCTTGGATAT 59.342 41.667 0.00 0.00 39.87 1.63
2799 2875 4.119862 TGAAAGTATCGATACAGGCAAGC 58.880 43.478 31.52 16.18 35.74 4.01
2826 2902 1.635487 GATGGGCCTAGGCATTCCATA 59.365 52.381 31.49 14.23 39.55 2.74
2830 2906 0.685097 TACGATGGGCCTAGGCATTC 59.315 55.000 34.09 23.89 44.11 2.67
2861 2937 4.220724 AGTGTCTATGGCCGGTAAATAGA 58.779 43.478 14.94 14.94 31.94 1.98
2865 2941 2.696707 CCTAGTGTCTATGGCCGGTAAA 59.303 50.000 1.90 0.00 0.00 2.01
2875 2951 2.447811 GGACTCCTCCCCTAGTGTCTAT 59.552 54.545 0.00 0.00 31.40 1.98
2876 2952 1.851653 GGACTCCTCCCCTAGTGTCTA 59.148 57.143 0.00 0.00 31.40 2.59
2901 2977 1.501292 CAACGTCGATTGCCATGCA 59.499 52.632 0.00 0.00 36.47 3.96
2904 2980 2.006888 CTAACCAACGTCGATTGCCAT 58.993 47.619 0.00 0.00 0.00 4.40
2908 2984 2.670905 TGATGCTAACCAACGTCGATTG 59.329 45.455 0.00 0.00 0.00 2.67
2931 3007 3.821995 GTGTCCCACACGCAGTTT 58.178 55.556 0.00 0.00 41.61 2.66
2941 3017 3.556213 CCAGTGATAAAGTTCGTGTCCCA 60.556 47.826 0.00 0.00 0.00 4.37
2996 3075 4.411927 GAGGGCCATAGATAGAAGTGAGA 58.588 47.826 6.18 0.00 0.00 3.27
3003 3082 1.006043 CTCCCGAGGGCCATAGATAGA 59.994 57.143 6.18 0.00 34.68 1.98
3005 3084 0.041238 CCTCCCGAGGGCCATAGATA 59.959 60.000 6.18 0.00 44.87 1.98
3006 3085 1.229336 CCTCCCGAGGGCCATAGAT 60.229 63.158 6.18 0.00 44.87 1.98
3085 3164 3.618690 AGTCTCCAATGACTAGCCAAC 57.381 47.619 0.00 0.00 44.53 3.77
3126 3205 4.118093 TGAGCGAATTGTTCTTATCCGA 57.882 40.909 0.00 0.00 0.00 4.55
3155 3234 3.250040 ACTGGCGAAATTTATCCATACGC 59.750 43.478 10.31 9.68 43.00 4.42
3162 3241 7.044052 GCTATCAACAAACTGGCGAAATTTATC 60.044 37.037 0.00 0.00 0.00 1.75
3170 3252 2.177394 TGCTATCAACAAACTGGCGA 57.823 45.000 0.00 0.00 0.00 5.54
3197 3279 2.299013 CCCGTGCATGTATAGCTCCTTA 59.701 50.000 4.96 0.00 0.00 2.69
3206 3288 1.050988 AGGCTCTCCCGTGCATGTAT 61.051 55.000 4.96 0.00 39.21 2.29
3242 3324 0.326618 TGAGGGTGGGGGAATCTCTC 60.327 60.000 0.00 0.00 0.00 3.20
3311 3397 4.285863 AGAGAGCTTGCAAGAGGTAGTAT 58.714 43.478 30.39 5.89 0.00 2.12
3312 3398 3.697045 GAGAGAGCTTGCAAGAGGTAGTA 59.303 47.826 30.39 0.00 0.00 1.82
3316 3402 0.612744 GGAGAGAGCTTGCAAGAGGT 59.387 55.000 30.39 10.58 0.00 3.85
3406 3492 4.202253 GCTTGGTCCAGAAAACCTCAAATT 60.202 41.667 0.00 0.00 37.69 1.82
3445 3531 2.186873 ATCCAGGACTCCCTCAGCCA 62.187 60.000 0.00 0.00 42.02 4.75
3463 3551 2.025636 CTGTCCGGATACCCCCTTAT 57.974 55.000 7.81 0.00 0.00 1.73
3464 3552 0.761702 GCTGTCCGGATACCCCCTTA 60.762 60.000 7.81 0.00 0.00 2.69
3465 3553 2.070650 GCTGTCCGGATACCCCCTT 61.071 63.158 7.81 0.00 0.00 3.95
3466 3554 2.446036 GCTGTCCGGATACCCCCT 60.446 66.667 7.81 0.00 0.00 4.79
3467 3555 2.446036 AGCTGTCCGGATACCCCC 60.446 66.667 7.81 0.00 0.00 5.40
3468 3556 2.808206 CCAGCTGTCCGGATACCCC 61.808 68.421 7.81 0.00 0.00 4.95
3469 3557 1.760875 TCCAGCTGTCCGGATACCC 60.761 63.158 7.81 0.00 0.00 3.69
3470 3558 1.043673 AGTCCAGCTGTCCGGATACC 61.044 60.000 7.81 0.00 32.83 2.73
3471 3559 1.688772 TAGTCCAGCTGTCCGGATAC 58.311 55.000 7.81 0.00 32.83 2.24
3472 3560 2.239400 CATAGTCCAGCTGTCCGGATA 58.761 52.381 7.81 3.21 32.83 2.59
3473 3561 1.043816 CATAGTCCAGCTGTCCGGAT 58.956 55.000 7.81 0.00 32.83 4.18
3474 3562 0.324368 ACATAGTCCAGCTGTCCGGA 60.324 55.000 13.81 0.00 0.00 5.14
3475 3563 1.067212 GTACATAGTCCAGCTGTCCGG 59.933 57.143 13.81 0.00 0.00 5.14
3476 3564 2.025155 AGTACATAGTCCAGCTGTCCG 58.975 52.381 13.81 0.00 0.00 4.79
3477 3565 4.184629 CAAAGTACATAGTCCAGCTGTCC 58.815 47.826 13.81 2.06 0.00 4.02
3478 3566 4.184629 CCAAAGTACATAGTCCAGCTGTC 58.815 47.826 13.81 5.49 0.00 3.51
3479 3567 3.619979 GCCAAAGTACATAGTCCAGCTGT 60.620 47.826 13.81 0.00 0.00 4.40
3480 3568 2.939103 GCCAAAGTACATAGTCCAGCTG 59.061 50.000 6.78 6.78 0.00 4.24
3481 3569 2.092914 GGCCAAAGTACATAGTCCAGCT 60.093 50.000 0.00 0.00 0.00 4.24
3482 3570 2.289565 GGCCAAAGTACATAGTCCAGC 58.710 52.381 0.00 0.00 0.00 4.85
3483 3571 2.550978 CGGCCAAAGTACATAGTCCAG 58.449 52.381 2.24 0.00 0.00 3.86
3484 3572 1.208535 CCGGCCAAAGTACATAGTCCA 59.791 52.381 2.24 0.00 0.00 4.02
3485 3573 1.483415 TCCGGCCAAAGTACATAGTCC 59.517 52.381 2.24 0.00 0.00 3.85
3486 3574 2.167900 AGTCCGGCCAAAGTACATAGTC 59.832 50.000 2.24 0.00 0.00 2.59
3487 3575 2.093658 CAGTCCGGCCAAAGTACATAGT 60.094 50.000 2.24 0.00 0.00 2.12
3488 3576 2.093658 ACAGTCCGGCCAAAGTACATAG 60.094 50.000 2.24 0.00 0.00 2.23
3489 3577 1.903860 ACAGTCCGGCCAAAGTACATA 59.096 47.619 2.24 0.00 0.00 2.29
3490 3578 0.690762 ACAGTCCGGCCAAAGTACAT 59.309 50.000 2.24 0.00 0.00 2.29
3491 3579 0.470766 AACAGTCCGGCCAAAGTACA 59.529 50.000 2.24 0.00 0.00 2.90
3492 3580 0.872388 CAACAGTCCGGCCAAAGTAC 59.128 55.000 2.24 0.00 0.00 2.73
3493 3581 0.759959 TCAACAGTCCGGCCAAAGTA 59.240 50.000 2.24 0.00 0.00 2.24
3494 3582 0.106918 TTCAACAGTCCGGCCAAAGT 60.107 50.000 2.24 0.00 0.00 2.66
3495 3583 0.310854 GTTCAACAGTCCGGCCAAAG 59.689 55.000 2.24 0.00 0.00 2.77
3496 3584 0.106918 AGTTCAACAGTCCGGCCAAA 60.107 50.000 2.24 0.00 0.00 3.28
3497 3585 0.759959 TAGTTCAACAGTCCGGCCAA 59.240 50.000 2.24 0.00 0.00 4.52
3498 3586 0.981183 ATAGTTCAACAGTCCGGCCA 59.019 50.000 2.24 0.00 0.00 5.36
3499 3587 1.066430 TCATAGTTCAACAGTCCGGCC 60.066 52.381 0.00 0.00 0.00 6.13
3500 3588 2.380084 TCATAGTTCAACAGTCCGGC 57.620 50.000 0.00 0.00 0.00 6.13
3501 3589 4.188247 TCTTCATAGTTCAACAGTCCGG 57.812 45.455 0.00 0.00 0.00 5.14
3502 3590 6.330278 TGTATCTTCATAGTTCAACAGTCCG 58.670 40.000 0.00 0.00 0.00 4.79
3503 3591 8.035394 TCTTGTATCTTCATAGTTCAACAGTCC 58.965 37.037 0.00 0.00 0.00 3.85
3504 3592 8.988064 TCTTGTATCTTCATAGTTCAACAGTC 57.012 34.615 0.00 0.00 0.00 3.51
3505 3593 9.950496 AATCTTGTATCTTCATAGTTCAACAGT 57.050 29.630 0.00 0.00 0.00 3.55
3507 3595 9.942850 TCAATCTTGTATCTTCATAGTTCAACA 57.057 29.630 0.00 0.00 0.00 3.33
3515 3603 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
3516 3604 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
3517 3605 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
3518 3606 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
3549 3637 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.000 6.61 6.61 40.73 5.14
3550 3638 0.179000 CAAAGGAGAGTCCCATCCGG 59.821 60.000 0.00 0.00 40.73 5.14
3551 3639 0.462759 GCAAAGGAGAGTCCCATCCG 60.463 60.000 1.17 0.00 40.73 4.18
3552 3640 0.462759 CGCAAAGGAGAGTCCCATCC 60.463 60.000 1.17 0.00 37.19 3.51
3553 3641 0.250513 ACGCAAAGGAGAGTCCCATC 59.749 55.000 1.17 0.00 37.19 3.51
3554 3642 0.036010 CACGCAAAGGAGAGTCCCAT 60.036 55.000 1.17 0.00 37.19 4.00
3555 3643 1.371183 CACGCAAAGGAGAGTCCCA 59.629 57.895 1.17 0.00 37.19 4.37
3556 3644 1.376037 CCACGCAAAGGAGAGTCCC 60.376 63.158 0.00 0.00 37.19 4.46
3557 3645 0.034896 TTCCACGCAAAGGAGAGTCC 59.965 55.000 0.00 0.00 36.33 3.85
3558 3646 1.433534 CTTCCACGCAAAGGAGAGTC 58.566 55.000 0.00 0.00 36.33 3.36
3559 3647 0.035458 CCTTCCACGCAAAGGAGAGT 59.965 55.000 5.37 0.00 45.15 3.24
3560 3648 1.301677 GCCTTCCACGCAAAGGAGAG 61.302 60.000 13.57 3.40 45.15 3.20
3561 3649 1.302511 GCCTTCCACGCAAAGGAGA 60.303 57.895 13.57 0.00 45.15 3.71
3562 3650 1.172180 TTGCCTTCCACGCAAAGGAG 61.172 55.000 13.57 0.00 45.15 3.69
3563 3651 1.152860 TTGCCTTCCACGCAAAGGA 60.153 52.632 13.57 0.00 45.15 3.36
3564 3652 1.286880 CTTGCCTTCCACGCAAAGG 59.713 57.895 6.69 6.69 45.11 3.11
3565 3653 1.372128 GCTTGCCTTCCACGCAAAG 60.372 57.895 0.00 0.00 45.11 2.77
3566 3654 1.391157 AAGCTTGCCTTCCACGCAAA 61.391 50.000 0.00 0.00 45.11 3.68
3567 3655 1.827789 AAGCTTGCCTTCCACGCAA 60.828 52.632 0.00 0.00 43.71 4.85
3568 3656 2.203337 AAGCTTGCCTTCCACGCA 60.203 55.556 0.00 0.00 40.87 5.24
3569 3657 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
3570 3658 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
3571 3659 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
3572 3660 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
3573 3661 1.598701 AATCGCCAAGCTTGCCTTCC 61.599 55.000 21.43 5.26 0.00 3.46
3574 3662 0.179153 GAATCGCCAAGCTTGCCTTC 60.179 55.000 21.43 14.81 0.00 3.46
3575 3663 1.885871 GAATCGCCAAGCTTGCCTT 59.114 52.632 21.43 10.35 0.00 4.35
3576 3664 2.401766 CGAATCGCCAAGCTTGCCT 61.402 57.895 21.43 2.43 0.00 4.75
3577 3665 1.922135 TTCGAATCGCCAAGCTTGCC 61.922 55.000 21.43 9.45 0.00 4.52
3578 3666 0.099436 ATTCGAATCGCCAAGCTTGC 59.901 50.000 21.43 14.85 0.00 4.01
3579 3667 1.398041 TCATTCGAATCGCCAAGCTTG 59.602 47.619 19.93 19.93 0.00 4.01
3580 3668 1.737838 TCATTCGAATCGCCAAGCTT 58.262 45.000 7.92 0.00 0.00 3.74
3581 3669 1.959042 ATCATTCGAATCGCCAAGCT 58.041 45.000 7.92 0.00 0.00 3.74
3582 3670 3.059884 TCTATCATTCGAATCGCCAAGC 58.940 45.455 7.92 0.00 0.00 4.01
3583 3671 6.199908 GGATATCTATCATTCGAATCGCCAAG 59.800 42.308 7.92 2.29 34.40 3.61
3584 3672 6.042777 GGATATCTATCATTCGAATCGCCAA 58.957 40.000 7.92 0.00 34.40 4.52
3585 3673 5.360999 AGGATATCTATCATTCGAATCGCCA 59.639 40.000 7.92 0.00 34.40 5.69
3586 3674 5.837437 AGGATATCTATCATTCGAATCGCC 58.163 41.667 7.92 0.00 34.40 5.54
3587 3675 7.388290 GAAGGATATCTATCATTCGAATCGC 57.612 40.000 7.92 0.00 41.61 4.58
3595 3683 8.744652 CGGTTACAGAGAAGGATATCTATCATT 58.255 37.037 2.05 0.00 39.16 2.57
3596 3684 8.110271 TCGGTTACAGAGAAGGATATCTATCAT 58.890 37.037 2.05 0.00 34.40 2.45
3597 3685 7.390996 GTCGGTTACAGAGAAGGATATCTATCA 59.609 40.741 2.05 0.00 34.40 2.15
3598 3686 7.608761 AGTCGGTTACAGAGAAGGATATCTATC 59.391 40.741 2.05 1.71 0.00 2.08
3599 3687 7.463431 AGTCGGTTACAGAGAAGGATATCTAT 58.537 38.462 2.05 0.00 0.00 1.98
3600 3688 6.839454 AGTCGGTTACAGAGAAGGATATCTA 58.161 40.000 2.05 0.00 0.00 1.98
3601 3689 5.697067 AGTCGGTTACAGAGAAGGATATCT 58.303 41.667 2.05 0.00 0.00 1.98
3602 3690 5.766174 AGAGTCGGTTACAGAGAAGGATATC 59.234 44.000 0.00 0.00 0.00 1.63
3603 3691 5.533154 CAGAGTCGGTTACAGAGAAGGATAT 59.467 44.000 0.00 0.00 0.00 1.63
3604 3692 4.882427 CAGAGTCGGTTACAGAGAAGGATA 59.118 45.833 0.00 0.00 0.00 2.59
3605 3693 3.697045 CAGAGTCGGTTACAGAGAAGGAT 59.303 47.826 0.00 0.00 0.00 3.24
3606 3694 3.082548 CAGAGTCGGTTACAGAGAAGGA 58.917 50.000 0.00 0.00 0.00 3.36
3607 3695 2.820787 ACAGAGTCGGTTACAGAGAAGG 59.179 50.000 0.00 0.00 0.00 3.46
3608 3696 3.253677 ACACAGAGTCGGTTACAGAGAAG 59.746 47.826 0.00 0.00 0.00 2.85
3609 3697 3.220110 ACACAGAGTCGGTTACAGAGAA 58.780 45.455 0.00 0.00 0.00 2.87
3610 3698 2.860009 ACACAGAGTCGGTTACAGAGA 58.140 47.619 0.00 0.00 0.00 3.10
3611 3699 4.474113 GTTACACAGAGTCGGTTACAGAG 58.526 47.826 0.00 0.00 0.00 3.35
3612 3700 3.254166 GGTTACACAGAGTCGGTTACAGA 59.746 47.826 0.00 0.00 0.00 3.41
3613 3701 3.572584 GGTTACACAGAGTCGGTTACAG 58.427 50.000 0.00 0.00 0.00 2.74
3614 3702 2.297033 GGGTTACACAGAGTCGGTTACA 59.703 50.000 0.00 0.00 0.00 2.41
3615 3703 2.560105 AGGGTTACACAGAGTCGGTTAC 59.440 50.000 0.00 0.00 0.00 2.50
3616 3704 2.880443 AGGGTTACACAGAGTCGGTTA 58.120 47.619 0.00 0.00 0.00 2.85
3617 3705 1.713297 AGGGTTACACAGAGTCGGTT 58.287 50.000 0.00 0.00 0.00 4.44
3618 3706 2.592102 TAGGGTTACACAGAGTCGGT 57.408 50.000 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.