Multiple sequence alignment - TraesCS4B01G300200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G300200 chr4B 100.000 3380 0 0 1 3380 586582002 586585381 0.000000e+00 6242.0
1 TraesCS4B01G300200 chr4B 81.105 344 39 15 2382 2708 637370339 637370673 5.600000e-63 252.0
2 TraesCS4B01G300200 chr4B 82.249 169 21 3 1747 1912 637380084 637380246 1.640000e-28 137.0
3 TraesCS4B01G300200 chr4B 96.078 51 2 0 1499 1549 362106270 362106320 2.160000e-12 84.2
4 TraesCS4B01G300200 chr4D 86.676 1411 98 38 1549 2911 468270418 468271786 0.000000e+00 1482.0
5 TraesCS4B01G300200 chr4D 80.092 1085 101 62 32 1065 468268987 468270007 0.000000e+00 701.0
6 TraesCS4B01G300200 chr4D 86.034 358 26 12 2981 3330 468272338 468272679 2.480000e-96 363.0
7 TraesCS4B01G300200 chr4D 85.207 169 21 3 2382 2548 496936528 496936694 1.610000e-38 171.0
8 TraesCS4B01G300200 chr4D 95.652 46 2 0 1504 1549 477587047 477587002 1.300000e-09 75.0
9 TraesCS4B01G300200 chr4A 91.382 673 41 8 2106 2770 3121135 3120472 0.000000e+00 905.0
10 TraesCS4B01G300200 chr4A 90.018 551 43 8 1554 2098 3121728 3121184 0.000000e+00 702.0
11 TraesCS4B01G300200 chr4A 80.742 971 62 60 68 1010 3123042 3122169 2.840000e-180 641.0
12 TraesCS4B01G300200 chr4A 84.034 595 34 26 2792 3379 3120412 3119872 1.800000e-142 516.0
13 TraesCS4B01G300200 chr4A 91.781 73 3 3 1045 1116 3122170 3122100 7.720000e-17 99.0
14 TraesCS4B01G300200 chr5A 76.068 585 81 36 2139 2701 676375083 676375630 2.010000e-62 250.0
15 TraesCS4B01G300200 chr5A 79.429 350 35 12 2376 2708 676384331 676384660 2.640000e-51 213.0
16 TraesCS4B01G300200 chr5A 81.122 196 23 7 1769 1960 676378381 676378566 9.770000e-31 145.0
17 TraesCS4B01G300200 chr5A 95.652 46 2 0 1504 1549 509637616 509637661 1.300000e-09 75.0
18 TraesCS4B01G300200 chr5A 95.652 46 2 0 1504 1549 653621529 653621574 1.300000e-09 75.0
19 TraesCS4B01G300200 chr6D 95.745 47 2 0 1503 1549 82637361 82637407 3.620000e-10 76.8
20 TraesCS4B01G300200 chr5B 95.745 47 2 0 1503 1549 482604251 482604297 3.620000e-10 76.8
21 TraesCS4B01G300200 chr1B 95.745 47 2 0 1503 1549 120041925 120041971 3.620000e-10 76.8
22 TraesCS4B01G300200 chr6B 91.071 56 4 1 1494 1549 20747937 20747883 1.300000e-09 75.0
23 TraesCS4B01G300200 chr6B 93.878 49 3 0 1501 1549 54859142 54859190 1.300000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G300200 chr4B 586582002 586585381 3379 False 6242.000000 6242 100.000000 1 3380 1 chr4B.!!$F2 3379
1 TraesCS4B01G300200 chr4D 468268987 468272679 3692 False 848.666667 1482 84.267333 32 3330 3 chr4D.!!$F2 3298
2 TraesCS4B01G300200 chr4A 3119872 3123042 3170 True 572.600000 905 87.591400 68 3379 5 chr4A.!!$R1 3311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 388 0.029300 CCAACAAATATCTGGCGGCG 59.971 55.0 0.51 0.51 0.00 6.46 F
590 683 0.029577 ATTTCTCTCCCCTCCCCTCC 60.030 60.0 0.00 0.00 0.00 4.30 F
1026 1160 0.324368 AGGTGTACCTGGATCGCTCA 60.324 55.0 2.06 0.00 46.55 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1598 0.176680 ACATAACGAGCAGGAGCAGG 59.823 55.0 0.00 0.00 45.49 4.85 R
2162 2435 0.319728 CAGCGCCCATAGCTATCTGT 59.680 55.0 2.29 0.00 44.06 3.41 R
2934 3257 0.037697 GGGAAACAACCGGGCATTTC 60.038 55.0 6.32 11.93 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.910199 GGTAACAACGGGAGGGAATAC 58.090 52.381 0.00 0.00 0.00 1.89
34 35 2.543641 GTAACAACGGGAGGGAATACG 58.456 52.381 0.00 0.00 0.00 3.06
35 36 0.978907 AACAACGGGAGGGAATACGT 59.021 50.000 0.00 0.00 41.88 3.57
41 42 1.198637 CGGGAGGGAATACGTACGATC 59.801 57.143 24.41 15.95 0.00 3.69
43 44 2.146342 GGAGGGAATACGTACGATCGA 58.854 52.381 24.34 2.23 34.70 3.59
46 47 2.031333 AGGGAATACGTACGATCGAAGC 60.031 50.000 24.34 9.98 34.70 3.86
61 62 1.301677 GAAGCTGGACAGGGAAAGCG 61.302 60.000 1.01 0.00 40.63 4.68
71 72 4.084888 GGAAAGCGTTGGCCGTCG 62.085 66.667 13.78 13.78 41.24 5.12
161 178 4.415332 CGCGTCCACGTAGCCAGT 62.415 66.667 0.00 0.00 42.22 4.00
165 182 4.111016 TCCACGTAGCCAGTCGCG 62.111 66.667 0.00 0.00 44.76 5.87
257 281 2.937959 GATCCCCTCCGCTCTGGTCT 62.938 65.000 0.00 0.00 39.52 3.85
259 283 3.465403 CCCTCCGCTCTGGTCTGG 61.465 72.222 0.00 0.00 39.52 3.86
260 284 2.681778 CCTCCGCTCTGGTCTGGT 60.682 66.667 0.00 0.00 39.52 4.00
261 285 2.716017 CCTCCGCTCTGGTCTGGTC 61.716 68.421 0.00 0.00 39.52 4.02
262 286 2.680352 TCCGCTCTGGTCTGGTCC 60.680 66.667 0.00 0.00 39.52 4.46
263 287 4.135153 CCGCTCTGGTCTGGTCCG 62.135 72.222 0.00 0.00 0.00 4.79
264 288 4.135153 CGCTCTGGTCTGGTCCGG 62.135 72.222 0.00 0.00 35.33 5.14
265 289 4.459089 GCTCTGGTCTGGTCCGGC 62.459 72.222 0.00 0.00 34.12 6.13
266 290 3.775654 CTCTGGTCTGGTCCGGCC 61.776 72.222 0.00 1.41 34.12 6.13
267 291 4.316823 TCTGGTCTGGTCCGGCCT 62.317 66.667 14.76 0.00 38.35 5.19
268 292 4.087892 CTGGTCTGGTCCGGCCTG 62.088 72.222 14.76 13.98 38.35 4.85
271 295 4.083862 GTCTGGTCCGGCCTGGTC 62.084 72.222 17.37 7.70 39.52 4.02
288 312 4.115199 CGGCCTCCCCTTCCCTTG 62.115 72.222 0.00 0.00 0.00 3.61
316 350 3.204827 CCGCCCCGCAGATCTTTG 61.205 66.667 0.00 0.00 0.00 2.77
349 386 3.944871 GCCAACAAATATCTGGCGG 57.055 52.632 0.00 0.00 45.72 6.13
350 387 0.249031 GCCAACAAATATCTGGCGGC 60.249 55.000 0.00 0.00 45.72 6.53
351 388 0.029300 CCAACAAATATCTGGCGGCG 59.971 55.000 0.51 0.51 0.00 6.46
352 389 0.029300 CAACAAATATCTGGCGGCGG 59.971 55.000 12.43 12.43 0.00 6.13
353 390 1.101049 AACAAATATCTGGCGGCGGG 61.101 55.000 18.83 6.70 0.00 6.13
354 391 2.113139 AAATATCTGGCGGCGGGG 59.887 61.111 18.83 3.94 0.00 5.73
355 392 4.643387 AATATCTGGCGGCGGGGC 62.643 66.667 18.83 0.00 42.69 5.80
363 400 4.681978 GCGGCGGGGCGAGATATT 62.682 66.667 19.18 0.00 0.00 1.28
364 401 2.030562 CGGCGGGGCGAGATATTT 59.969 61.111 9.17 0.00 0.00 1.40
365 402 2.027625 CGGCGGGGCGAGATATTTC 61.028 63.158 9.17 0.00 0.00 2.17
366 403 1.671379 GGCGGGGCGAGATATTTCC 60.671 63.158 0.00 0.00 0.00 3.13
367 404 1.070786 GCGGGGCGAGATATTTCCA 59.929 57.895 0.00 0.00 0.00 3.53
368 405 1.228657 GCGGGGCGAGATATTTCCAC 61.229 60.000 0.00 0.00 0.00 4.02
369 406 0.602905 CGGGGCGAGATATTTCCACC 60.603 60.000 0.00 0.00 0.00 4.61
370 407 0.250770 GGGGCGAGATATTTCCACCC 60.251 60.000 9.50 9.50 34.99 4.61
371 408 0.250770 GGGCGAGATATTTCCACCCC 60.251 60.000 7.48 2.77 0.00 4.95
372 409 0.250770 GGCGAGATATTTCCACCCCC 60.251 60.000 0.00 0.00 0.00 5.40
373 410 0.602905 GCGAGATATTTCCACCCCCG 60.603 60.000 0.00 0.00 0.00 5.73
374 411 0.602905 CGAGATATTTCCACCCCCGC 60.603 60.000 0.00 0.00 0.00 6.13
375 412 0.602905 GAGATATTTCCACCCCCGCG 60.603 60.000 0.00 0.00 0.00 6.46
376 413 2.203294 ATATTTCCACCCCCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
377 414 3.785122 ATATTTCCACCCCCGCGCC 62.785 63.158 0.00 0.00 0.00 6.53
448 519 3.122150 GCAAAAAGGGCGTCCATTC 57.878 52.632 9.71 0.00 34.83 2.67
449 520 0.603065 GCAAAAAGGGCGTCCATTCT 59.397 50.000 9.71 0.00 34.83 2.40
450 521 1.000843 GCAAAAAGGGCGTCCATTCTT 59.999 47.619 9.71 0.00 34.83 2.52
451 522 2.547855 GCAAAAAGGGCGTCCATTCTTT 60.548 45.455 9.71 0.00 34.83 2.52
452 523 3.059166 CAAAAAGGGCGTCCATTCTTTG 58.941 45.455 9.71 8.25 34.83 2.77
453 524 0.603065 AAAGGGCGTCCATTCTTTGC 59.397 50.000 9.71 0.00 34.83 3.68
454 525 1.250840 AAGGGCGTCCATTCTTTGCC 61.251 55.000 9.71 0.00 44.98 4.52
455 526 1.678970 GGGCGTCCATTCTTTGCCT 60.679 57.895 0.00 0.00 45.06 4.75
456 527 1.657751 GGGCGTCCATTCTTTGCCTC 61.658 60.000 0.00 0.00 45.06 4.70
461 532 0.625849 TCCATTCTTTGCCTCTCCCC 59.374 55.000 0.00 0.00 0.00 4.81
491 562 1.538419 CGGGCGGAGGAGAAATACTTC 60.538 57.143 0.00 0.00 0.00 3.01
493 564 1.763545 GGCGGAGGAGAAATACTTCCT 59.236 52.381 0.00 0.00 34.91 3.36
543 636 1.897802 CCATTCTTTGCCTGCTTCCTT 59.102 47.619 0.00 0.00 0.00 3.36
544 637 2.094338 CCATTCTTTGCCTGCTTCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
545 638 1.620822 TTCTTTGCCTGCTTCCTTCC 58.379 50.000 0.00 0.00 0.00 3.46
546 639 0.773644 TCTTTGCCTGCTTCCTTCCT 59.226 50.000 0.00 0.00 0.00 3.36
547 640 1.172175 CTTTGCCTGCTTCCTTCCTC 58.828 55.000 0.00 0.00 0.00 3.71
548 641 0.251341 TTTGCCTGCTTCCTTCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
549 642 2.142292 TTGCCTGCTTCCTTCCTCCC 62.142 60.000 0.00 0.00 0.00 4.30
550 643 2.304831 GCCTGCTTCCTTCCTCCCT 61.305 63.158 0.00 0.00 0.00 4.20
551 644 1.911471 CCTGCTTCCTTCCTCCCTC 59.089 63.158 0.00 0.00 0.00 4.30
552 645 1.631071 CCTGCTTCCTTCCTCCCTCC 61.631 65.000 0.00 0.00 0.00 4.30
553 646 1.616628 TGCTTCCTTCCTCCCTCCC 60.617 63.158 0.00 0.00 0.00 4.30
554 647 1.307430 GCTTCCTTCCTCCCTCCCT 60.307 63.158 0.00 0.00 0.00 4.20
555 648 1.341913 GCTTCCTTCCTCCCTCCCTC 61.342 65.000 0.00 0.00 0.00 4.30
556 649 0.692756 CTTCCTTCCTCCCTCCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
557 650 2.444895 CCTTCCTCCCTCCCTCCG 60.445 72.222 0.00 0.00 0.00 4.63
558 651 3.157949 CTTCCTCCCTCCCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
577 670 1.218230 CTCCGCCGCTGCTATTTCTC 61.218 60.000 0.00 0.00 34.43 2.87
588 681 1.415273 GCTATTTCTCTCCCCTCCCCT 60.415 57.143 0.00 0.00 0.00 4.79
589 682 2.615391 CTATTTCTCTCCCCTCCCCTC 58.385 57.143 0.00 0.00 0.00 4.30
590 683 0.029577 ATTTCTCTCCCCTCCCCTCC 60.030 60.000 0.00 0.00 0.00 4.30
591 684 2.196304 TTTCTCTCCCCTCCCCTCCC 62.196 65.000 0.00 0.00 0.00 4.30
592 685 4.548513 CTCTCCCCTCCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
594 687 4.862823 CTCCCCTCCCCTCCCGTC 62.863 77.778 0.00 0.00 0.00 4.79
630 737 2.347490 CCGGCCGAATCCCCATAG 59.653 66.667 30.73 0.44 0.00 2.23
637 744 2.224769 GCCGAATCCCCATAGATTTCCA 60.225 50.000 0.00 0.00 36.60 3.53
642 749 3.087956 TCCCCATAGATTTCCATCCCA 57.912 47.619 0.00 0.00 0.00 4.37
653 760 4.935495 CATCCCATCCCCGCCACG 62.935 72.222 0.00 0.00 0.00 4.94
680 787 2.080062 GCTCGCTCGATCGATCTGC 61.080 63.158 19.78 22.32 37.87 4.26
682 789 2.429907 CGCTCGATCGATCTGCCC 60.430 66.667 19.78 7.78 0.00 5.36
743 850 5.130350 TCTCTTCTTGATTGTTTTCCGGTT 58.870 37.500 0.00 0.00 0.00 4.44
751 858 0.324460 TGTTTTCCGGTTGTTGGGGT 60.324 50.000 0.00 0.00 0.00 4.95
771 878 2.703409 CAAATCTCTTCCGCGCCG 59.297 61.111 0.00 0.00 0.00 6.46
788 901 2.442458 GGTCTCCTCCCCGACCTC 60.442 72.222 0.00 0.00 44.90 3.85
789 902 2.442458 GTCTCCTCCCCGACCTCC 60.442 72.222 0.00 0.00 0.00 4.30
790 903 2.944954 TCTCCTCCCCGACCTCCA 60.945 66.667 0.00 0.00 0.00 3.86
817 930 2.498885 GCTCAATTCAAGGGGATTTGCT 59.501 45.455 0.00 0.00 37.00 3.91
821 934 4.840115 TCAATTCAAGGGGATTTGCTTCTT 59.160 37.500 0.00 0.00 37.00 2.52
828 941 2.291865 GGGGATTTGCTTCTTCCTTCCT 60.292 50.000 0.00 0.00 0.00 3.36
832 945 3.884037 TTTGCTTCTTCCTTCCTTCCT 57.116 42.857 0.00 0.00 0.00 3.36
833 946 3.884037 TTGCTTCTTCCTTCCTTCCTT 57.116 42.857 0.00 0.00 0.00 3.36
834 947 3.425162 TGCTTCTTCCTTCCTTCCTTC 57.575 47.619 0.00 0.00 0.00 3.46
835 948 2.040412 TGCTTCTTCCTTCCTTCCTTCC 59.960 50.000 0.00 0.00 0.00 3.46
836 949 2.307392 GCTTCTTCCTTCCTTCCTTCCT 59.693 50.000 0.00 0.00 0.00 3.36
837 950 3.245087 GCTTCTTCCTTCCTTCCTTCCTT 60.245 47.826 0.00 0.00 0.00 3.36
838 951 4.584874 CTTCTTCCTTCCTTCCTTCCTTC 58.415 47.826 0.00 0.00 0.00 3.46
839 952 2.913617 TCTTCCTTCCTTCCTTCCTTCC 59.086 50.000 0.00 0.00 0.00 3.46
841 954 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
920 1047 3.328931 AGATCTTTCTTGTCTCAGGCCAA 59.671 43.478 5.01 0.00 0.00 4.52
959 1086 2.607750 GGGTCCTCTGCCTGTCCA 60.608 66.667 0.00 0.00 0.00 4.02
993 1122 2.167487 GGCTCCTTCTCCTGACAAGTAG 59.833 54.545 0.00 0.00 0.00 2.57
994 1123 3.093057 GCTCCTTCTCCTGACAAGTAGA 58.907 50.000 0.00 0.00 0.00 2.59
1026 1160 0.324368 AGGTGTACCTGGATCGCTCA 60.324 55.000 2.06 0.00 46.55 4.26
1041 1175 2.922503 TCAGTCAAGCCGGAGCCA 60.923 61.111 5.05 0.00 41.25 4.75
1089 1224 2.750237 GGTCCGCCACATGTTCCC 60.750 66.667 0.00 0.00 34.09 3.97
1090 1225 2.351276 GTCCGCCACATGTTCCCT 59.649 61.111 0.00 0.00 0.00 4.20
1091 1226 1.745489 GTCCGCCACATGTTCCCTC 60.745 63.158 0.00 0.00 0.00 4.30
1106 1241 8.336235 ACATGTTCCCTCTCTCCATTTTTATTA 58.664 33.333 0.00 0.00 0.00 0.98
1108 1243 9.942526 ATGTTCCCTCTCTCCATTTTTATTATT 57.057 29.630 0.00 0.00 0.00 1.40
1136 1320 2.624636 TCTAGCAGTGTGTGATGCATG 58.375 47.619 2.46 0.00 45.01 4.06
1155 1339 6.252036 GCATGATTGCTCGATTTTGTTAAG 57.748 37.500 0.00 0.00 45.77 1.85
1156 1340 6.029607 GCATGATTGCTCGATTTTGTTAAGA 58.970 36.000 0.00 0.00 45.77 2.10
1157 1341 6.527722 GCATGATTGCTCGATTTTGTTAAGAA 59.472 34.615 0.00 0.00 45.77 2.52
1158 1342 7.062138 GCATGATTGCTCGATTTTGTTAAGAAA 59.938 33.333 0.00 0.00 45.77 2.52
1159 1343 9.079833 CATGATTGCTCGATTTTGTTAAGAAAT 57.920 29.630 0.00 0.00 0.00 2.17
1183 1367 9.449719 AATAATATCGAGTAATTTCCATGGTCC 57.550 33.333 12.58 0.00 0.00 4.46
1185 1369 3.869065 TCGAGTAATTTCCATGGTCCAC 58.131 45.455 12.58 4.29 0.00 4.02
1203 1387 2.808543 CCACTGTTGCTTACCACTCTTC 59.191 50.000 0.00 0.00 0.00 2.87
1223 1407 6.546484 TCTTCTTCTCAATTCAAGGACCAAT 58.454 36.000 0.00 0.00 0.00 3.16
1227 1411 9.973661 TTCTTCTCAATTCAAGGACCAATATTA 57.026 29.630 0.00 0.00 0.00 0.98
1228 1412 9.396022 TCTTCTCAATTCAAGGACCAATATTAC 57.604 33.333 0.00 0.00 0.00 1.89
1251 1435 7.849804 ACTTACTATGTTCATAACAGCAAGG 57.150 36.000 0.00 0.00 45.95 3.61
1252 1436 6.316390 ACTTACTATGTTCATAACAGCAAGGC 59.684 38.462 0.00 0.00 45.95 4.35
1253 1437 3.947834 ACTATGTTCATAACAGCAAGGCC 59.052 43.478 0.00 0.00 45.95 5.19
1254 1438 2.284754 TGTTCATAACAGCAAGGCCA 57.715 45.000 5.01 0.00 36.25 5.36
1255 1439 2.591923 TGTTCATAACAGCAAGGCCAA 58.408 42.857 5.01 0.00 36.25 4.52
1256 1440 2.557924 TGTTCATAACAGCAAGGCCAAG 59.442 45.455 5.01 0.00 36.25 3.61
1257 1441 2.819608 GTTCATAACAGCAAGGCCAAGA 59.180 45.455 5.01 0.00 0.00 3.02
1258 1442 3.153369 TCATAACAGCAAGGCCAAGAA 57.847 42.857 5.01 0.00 0.00 2.52
1259 1443 2.819608 TCATAACAGCAAGGCCAAGAAC 59.180 45.455 5.01 0.00 0.00 3.01
1260 1444 2.356665 TAACAGCAAGGCCAAGAACA 57.643 45.000 5.01 0.00 0.00 3.18
1261 1445 1.484038 AACAGCAAGGCCAAGAACAA 58.516 45.000 5.01 0.00 0.00 2.83
1262 1446 1.484038 ACAGCAAGGCCAAGAACAAA 58.516 45.000 5.01 0.00 0.00 2.83
1263 1447 1.410153 ACAGCAAGGCCAAGAACAAAG 59.590 47.619 5.01 0.00 0.00 2.77
1264 1448 1.043022 AGCAAGGCCAAGAACAAAGG 58.957 50.000 5.01 0.00 0.00 3.11
1265 1449 1.039856 GCAAGGCCAAGAACAAAGGA 58.960 50.000 5.01 0.00 0.00 3.36
1266 1450 1.412343 GCAAGGCCAAGAACAAAGGAA 59.588 47.619 5.01 0.00 0.00 3.36
1267 1451 2.037641 GCAAGGCCAAGAACAAAGGAAT 59.962 45.455 5.01 0.00 0.00 3.01
1268 1452 3.258123 GCAAGGCCAAGAACAAAGGAATA 59.742 43.478 5.01 0.00 0.00 1.75
1269 1453 4.809673 CAAGGCCAAGAACAAAGGAATAC 58.190 43.478 5.01 0.00 0.00 1.89
1270 1454 3.431415 AGGCCAAGAACAAAGGAATACC 58.569 45.455 5.01 0.00 0.00 2.73
1271 1455 2.496070 GGCCAAGAACAAAGGAATACCC 59.504 50.000 0.00 0.00 36.73 3.69
1286 1470 7.640597 AGGAATACCCTAAATGCTTTAACAC 57.359 36.000 0.00 0.00 45.48 3.32
1287 1471 6.605995 AGGAATACCCTAAATGCTTTAACACC 59.394 38.462 0.00 0.00 45.48 4.16
1288 1472 6.183360 GGAATACCCTAAATGCTTTAACACCC 60.183 42.308 0.00 0.00 0.00 4.61
1289 1473 3.086282 ACCCTAAATGCTTTAACACCCG 58.914 45.455 0.00 0.00 0.00 5.28
1303 1489 1.741145 ACACCCGTTGTTTGTCTGAAC 59.259 47.619 0.00 0.00 33.09 3.18
1309 1495 2.536130 CGTTGTTTGTCTGAACCGTCAC 60.536 50.000 0.00 0.00 0.00 3.67
1320 1506 1.837538 AACCGTCACGCCATTGTTCG 61.838 55.000 0.00 0.00 0.00 3.95
1321 1507 2.474266 CGTCACGCCATTGTTCGG 59.526 61.111 0.00 0.00 0.00 4.30
1354 1559 6.936900 TCTCTTCAAAACATAGTTCCTTCCAG 59.063 38.462 0.00 0.00 0.00 3.86
1360 1565 9.581289 TCAAAACATAGTTCCTTCCAGAAATTA 57.419 29.630 0.00 0.00 0.00 1.40
1408 1614 1.949847 GCTCCTGCTCCTGCTCGTTA 61.950 60.000 0.00 0.00 40.48 3.18
1442 1666 2.223386 TGCAAGTTACGAAAACAGCACC 60.223 45.455 15.53 1.15 31.70 5.01
1455 1679 0.957395 CAGCACCAGTCTCGCCAAAT 60.957 55.000 0.00 0.00 0.00 2.32
1456 1680 0.957395 AGCACCAGTCTCGCCAAATG 60.957 55.000 0.00 0.00 0.00 2.32
1457 1681 1.926511 GCACCAGTCTCGCCAAATGG 61.927 60.000 0.00 0.00 37.07 3.16
1482 1709 8.826710 GGCTAAATAAATTTGGAAAATGCTACC 58.173 33.333 0.00 0.00 30.82 3.18
1489 1716 2.513753 TGGAAAATGCTACCACTGTGG 58.486 47.619 24.80 24.80 45.02 4.17
1505 1732 3.018856 CTGTGGCCTTGAGCATGAATTA 58.981 45.455 3.32 0.00 46.50 1.40
1507 1734 2.099756 GTGGCCTTGAGCATGAATTACC 59.900 50.000 3.32 0.00 46.50 2.85
1508 1735 1.334869 GGCCTTGAGCATGAATTACCG 59.665 52.381 0.00 0.00 46.50 4.02
1509 1736 2.288666 GCCTTGAGCATGAATTACCGA 58.711 47.619 0.00 0.00 42.97 4.69
1510 1737 2.682856 GCCTTGAGCATGAATTACCGAA 59.317 45.455 0.00 0.00 42.97 4.30
1511 1738 3.128589 GCCTTGAGCATGAATTACCGAAA 59.871 43.478 0.00 0.00 42.97 3.46
1512 1739 4.380444 GCCTTGAGCATGAATTACCGAAAA 60.380 41.667 0.00 0.00 42.97 2.29
1513 1740 5.708948 CCTTGAGCATGAATTACCGAAAAA 58.291 37.500 0.00 0.00 0.00 1.94
1514 1741 5.801947 CCTTGAGCATGAATTACCGAAAAAG 59.198 40.000 0.00 0.00 0.00 2.27
1515 1742 5.309323 TGAGCATGAATTACCGAAAAAGG 57.691 39.130 0.00 0.00 37.30 3.11
1516 1743 4.105486 GAGCATGAATTACCGAAAAAGGC 58.895 43.478 0.00 0.00 33.69 4.35
1517 1744 3.763897 AGCATGAATTACCGAAAAAGGCT 59.236 39.130 0.00 0.00 33.69 4.58
1518 1745 4.220602 AGCATGAATTACCGAAAAAGGCTT 59.779 37.500 0.00 0.00 33.69 4.35
1519 1746 4.562789 GCATGAATTACCGAAAAAGGCTTC 59.437 41.667 0.00 0.00 33.69 3.86
1520 1747 5.708948 CATGAATTACCGAAAAAGGCTTCA 58.291 37.500 0.00 0.00 34.36 3.02
1521 1748 5.371115 TGAATTACCGAAAAAGGCTTCAG 57.629 39.130 0.00 0.00 33.69 3.02
1522 1749 3.850122 ATTACCGAAAAAGGCTTCAGC 57.150 42.857 0.00 0.00 41.14 4.26
1532 1759 4.242602 GCTTCAGCCCCGCTTTAT 57.757 55.556 0.00 0.00 36.40 1.40
1533 1760 3.396951 GCTTCAGCCCCGCTTTATA 57.603 52.632 0.00 0.00 36.40 0.98
1534 1761 1.897560 GCTTCAGCCCCGCTTTATAT 58.102 50.000 0.00 0.00 36.40 0.86
1535 1762 3.053831 GCTTCAGCCCCGCTTTATATA 57.946 47.619 0.00 0.00 36.40 0.86
1536 1763 3.610911 GCTTCAGCCCCGCTTTATATAT 58.389 45.455 0.00 0.00 36.40 0.86
1537 1764 4.766375 GCTTCAGCCCCGCTTTATATATA 58.234 43.478 0.00 0.00 36.40 0.86
1538 1765 5.183228 GCTTCAGCCCCGCTTTATATATAA 58.817 41.667 0.81 0.81 36.40 0.98
1539 1766 5.646360 GCTTCAGCCCCGCTTTATATATAAA 59.354 40.000 15.47 15.47 36.40 1.40
1540 1767 6.183360 GCTTCAGCCCCGCTTTATATATAAAG 60.183 42.308 29.34 29.34 42.13 1.85
1555 1782 9.658799 TTATATATAAAGCACAGATCCTTGAGC 57.341 33.333 2.56 0.00 35.29 4.26
1556 1783 2.574006 AAAGCACAGATCCTTGAGCA 57.426 45.000 7.04 0.00 37.16 4.26
1557 1784 2.803030 AAGCACAGATCCTTGAGCAT 57.197 45.000 7.04 0.00 37.16 3.79
1558 1785 2.039818 AGCACAGATCCTTGAGCATG 57.960 50.000 7.04 0.00 37.16 4.06
1559 1786 1.558294 AGCACAGATCCTTGAGCATGA 59.442 47.619 0.00 0.00 37.16 3.07
1560 1787 2.026542 AGCACAGATCCTTGAGCATGAA 60.027 45.455 0.00 0.00 37.16 2.57
1561 1788 2.950309 GCACAGATCCTTGAGCATGAAT 59.050 45.455 0.00 0.00 35.19 2.57
1562 1789 3.380637 GCACAGATCCTTGAGCATGAATT 59.619 43.478 0.00 0.00 35.19 2.17
1563 1790 4.142227 GCACAGATCCTTGAGCATGAATTT 60.142 41.667 0.00 0.00 35.19 1.82
1571 1798 4.442472 CCTTGAGCATGAATTTTGGATCCC 60.442 45.833 9.90 0.00 0.00 3.85
1573 1800 3.702548 TGAGCATGAATTTTGGATCCCTG 59.297 43.478 9.90 0.00 0.00 4.45
1586 1813 4.526970 TGGATCCCTGCTTTACTTTCATC 58.473 43.478 9.90 0.00 0.00 2.92
1592 1819 6.539173 TCCCTGCTTTACTTTCATCTTGTTA 58.461 36.000 0.00 0.00 0.00 2.41
1594 1821 6.317857 CCTGCTTTACTTTCATCTTGTTAGC 58.682 40.000 0.00 0.00 0.00 3.09
1596 1823 6.902341 TGCTTTACTTTCATCTTGTTAGCAG 58.098 36.000 0.00 0.00 31.51 4.24
1605 1832 7.849804 TTCATCTTGTTAGCAGATTTCTACC 57.150 36.000 0.00 0.00 0.00 3.18
1608 1835 4.783227 TCTTGTTAGCAGATTTCTACCCCT 59.217 41.667 0.00 0.00 0.00 4.79
1609 1836 4.487714 TGTTAGCAGATTTCTACCCCTG 57.512 45.455 0.00 0.00 0.00 4.45
1611 1838 2.270434 AGCAGATTTCTACCCCTGGA 57.730 50.000 0.00 0.00 0.00 3.86
1613 1840 2.919602 AGCAGATTTCTACCCCTGGAAA 59.080 45.455 0.00 0.00 36.17 3.13
1614 1841 3.529319 AGCAGATTTCTACCCCTGGAAAT 59.471 43.478 0.00 0.00 42.53 2.17
1615 1842 4.017130 AGCAGATTTCTACCCCTGGAAATT 60.017 41.667 0.00 0.00 40.73 1.82
1632 1859 9.736023 CCTGGAAATTAATAAACTGATTAGTGC 57.264 33.333 0.00 0.00 37.19 4.40
1635 1862 9.516314 GGAAATTAATAAACTGATTAGTGCCAC 57.484 33.333 0.00 0.00 37.19 5.01
1758 1985 4.998788 TCATCAACCGACTCTACAATCAG 58.001 43.478 0.00 0.00 0.00 2.90
1761 1988 2.496070 CAACCGACTCTACAATCAGGGA 59.504 50.000 0.00 0.00 0.00 4.20
1762 1989 2.100989 ACCGACTCTACAATCAGGGAC 58.899 52.381 0.00 0.00 0.00 4.46
1980 2210 0.881796 GGGCACAAACTTCAGTAGGC 59.118 55.000 0.00 0.00 0.00 3.93
2031 2261 1.222115 GGAGCACTCCGTTGTCACAC 61.222 60.000 0.00 0.00 40.36 3.82
2047 2277 0.774908 ACACGGAAGGGAATTGGGAA 59.225 50.000 0.00 0.00 38.45 3.97
2063 2293 1.889170 GGGAACTTGCAAGGGAGAAAG 59.111 52.381 29.18 3.67 0.00 2.62
2087 2317 5.220681 GCCTTCTCGATGAAAATTCAGGTAC 60.221 44.000 1.98 0.00 41.08 3.34
2100 2333 8.738645 AAAATTCAGGTACCTAGCTCAATTAG 57.261 34.615 15.80 0.00 34.23 1.73
2101 2334 7.439108 AATTCAGGTACCTAGCTCAATTAGT 57.561 36.000 15.80 0.00 33.71 2.24
2104 2337 5.363005 TCAGGTACCTAGCTCAATTAGTTCC 59.637 44.000 15.80 0.00 30.45 3.62
2106 2339 5.965091 AGGTACCTAGCTCAATTAGTTCCTT 59.035 40.000 14.41 0.00 0.00 3.36
2107 2340 6.444171 AGGTACCTAGCTCAATTAGTTCCTTT 59.556 38.462 14.41 0.00 0.00 3.11
2109 2342 8.262933 GGTACCTAGCTCAATTAGTTCCTTTAA 58.737 37.037 4.06 0.00 0.00 1.52
2111 2344 8.966069 ACCTAGCTCAATTAGTTCCTTTAATC 57.034 34.615 0.00 0.00 0.00 1.75
2162 2435 7.534723 ACCTATGTTATCCGTAAGCTCATAA 57.465 36.000 0.00 0.00 0.00 1.90
2173 2446 6.659668 TCCGTAAGCTCATAACAGATAGCTAT 59.340 38.462 5.76 5.76 44.30 2.97
2287 2561 2.595124 TCAGAACTTTGCTGACGACA 57.405 45.000 0.00 0.00 37.46 4.35
2364 2638 4.101741 AGCAGTTCTTCCACTTACTTCACT 59.898 41.667 0.00 0.00 0.00 3.41
2380 2654 3.303881 TCACTCAAACGATCCAGTGAG 57.696 47.619 10.95 10.95 40.25 3.51
2560 2836 0.890996 GGTGAGCACTGGAGGGTTTG 60.891 60.000 0.16 0.00 0.00 2.93
2563 2839 1.771854 TGAGCACTGGAGGGTTTGTTA 59.228 47.619 0.00 0.00 0.00 2.41
2580 2857 7.393515 GGGTTTGTTAACAGATTAGATTCTGGT 59.606 37.037 8.56 2.08 46.04 4.00
2620 2897 4.261031 GCAGTTAAAAGTCGATTGTGTGGT 60.261 41.667 0.00 0.00 0.00 4.16
2621 2898 5.440685 CAGTTAAAAGTCGATTGTGTGGTC 58.559 41.667 0.00 0.00 0.00 4.02
2622 2899 4.514066 AGTTAAAAGTCGATTGTGTGGTCC 59.486 41.667 0.00 0.00 0.00 4.46
2623 2900 1.508632 AAAGTCGATTGTGTGGTCCG 58.491 50.000 0.00 0.00 0.00 4.79
2624 2901 0.949105 AAGTCGATTGTGTGGTCCGC 60.949 55.000 0.00 0.00 0.00 5.54
2625 2902 1.374252 GTCGATTGTGTGGTCCGCT 60.374 57.895 3.62 0.00 0.00 5.52
2626 2903 1.080093 TCGATTGTGTGGTCCGCTC 60.080 57.895 3.62 0.26 0.00 5.03
2674 2951 3.506810 GCTCACTCACTGCTTAGTAGTG 58.493 50.000 21.58 21.58 45.23 2.74
2786 3109 6.915544 AGACAATTAGATGCTACACACATG 57.084 37.500 0.00 0.00 0.00 3.21
2787 3110 6.409704 AGACAATTAGATGCTACACACATGT 58.590 36.000 0.00 0.00 43.30 3.21
2835 3158 4.340894 TCAAATTGACAGCTGATAACGC 57.659 40.909 23.35 2.77 0.00 4.84
2864 3187 7.715266 TCAATTGGTATTGACATGGATGAAA 57.285 32.000 5.42 0.00 43.93 2.69
2865 3188 8.131847 TCAATTGGTATTGACATGGATGAAAA 57.868 30.769 5.42 0.00 43.93 2.29
2899 3222 8.134202 TGTAACATGATCCTCTTCTACTCAAA 57.866 34.615 0.00 0.00 0.00 2.69
2910 3233 6.593382 CCTCTTCTACTCAAAAGATGTGGAAG 59.407 42.308 10.69 10.69 44.83 3.46
2911 3234 7.067496 TCTTCTACTCAAAAGATGTGGAAGT 57.933 36.000 14.65 0.00 44.26 3.01
2912 3235 8.190326 TCTTCTACTCAAAAGATGTGGAAGTA 57.810 34.615 14.65 3.79 44.26 2.24
2913 3236 8.088981 TCTTCTACTCAAAAGATGTGGAAGTAC 58.911 37.037 14.65 0.00 44.26 2.73
2914 3237 6.698380 TCTACTCAAAAGATGTGGAAGTACC 58.302 40.000 0.00 0.00 39.54 3.34
2925 3248 3.981071 TGGAAGTACCAACCAGATCTG 57.019 47.619 16.24 16.24 46.75 2.90
2926 3249 3.268023 GGAAGTACCAACCAGATCTGG 57.732 52.381 35.55 35.55 46.49 3.86
2927 3250 2.838202 GGAAGTACCAACCAGATCTGGA 59.162 50.000 41.91 21.01 45.16 3.86
2928 3251 3.263425 GGAAGTACCAACCAGATCTGGAA 59.737 47.826 41.91 21.08 45.16 3.53
2929 3252 4.863482 GGAAGTACCAACCAGATCTGGAAC 60.863 50.000 41.91 28.52 45.16 3.62
3021 3846 7.408123 TGCAGTGCAATAAATCAAAGTTTTTG 58.592 30.769 17.26 0.00 34.76 2.44
3023 3848 7.254727 GCAGTGCAATAAATCAAAGTTTTTGGA 60.255 33.333 11.09 0.00 0.00 3.53
3024 3849 8.277713 CAGTGCAATAAATCAAAGTTTTTGGAG 58.722 33.333 0.00 0.00 0.00 3.86
3061 3887 1.305219 TGGTGCAGTTATCCGCTTGC 61.305 55.000 0.00 0.00 0.00 4.01
3127 3953 0.764890 TCTGCAATCCCCTAATCCCG 59.235 55.000 0.00 0.00 0.00 5.14
3189 4016 5.880901 AGGCTATTTTCTTTGAGAGTGGAA 58.119 37.500 0.00 0.00 0.00 3.53
3201 4028 1.065854 AGAGTGGAATTTGCTCCCGAG 60.066 52.381 0.00 0.00 34.22 4.63
3202 4029 0.693049 AGTGGAATTTGCTCCCGAGT 59.307 50.000 0.00 0.00 34.22 4.18
3203 4030 1.073923 AGTGGAATTTGCTCCCGAGTT 59.926 47.619 0.00 0.00 34.22 3.01
3204 4031 2.304761 AGTGGAATTTGCTCCCGAGTTA 59.695 45.455 0.00 0.00 34.22 2.24
3205 4032 2.418976 GTGGAATTTGCTCCCGAGTTAC 59.581 50.000 0.00 0.00 34.22 2.50
3206 4033 2.039216 TGGAATTTGCTCCCGAGTTACA 59.961 45.455 0.00 0.00 34.22 2.41
3207 4034 3.279434 GGAATTTGCTCCCGAGTTACAT 58.721 45.455 0.00 0.00 0.00 2.29
3208 4035 3.065371 GGAATTTGCTCCCGAGTTACATG 59.935 47.826 0.00 0.00 0.00 3.21
3222 4049 4.600062 AGTTACATGGAGCCCTTTTTAGG 58.400 43.478 0.00 0.00 0.00 2.69
3369 4203 8.016497 TGCACATGATTTAATTTTTGTGTAGC 57.984 30.769 0.00 0.00 37.40 3.58
3379 4213 8.641499 TTAATTTTTGTGTAGCTTTCACCAAG 57.359 30.769 15.68 0.00 35.25 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.727726 GTTGTTACCATGGCTTTTGCTT 58.272 40.909 13.04 0.00 46.54 3.91
2 3 2.058057 CGTTGTTACCATGGCTTTTGC 58.942 47.619 13.04 0.00 46.64 3.68
3 4 2.609244 CCCGTTGTTACCATGGCTTTTG 60.609 50.000 13.04 0.00 0.00 2.44
4 5 1.616374 CCCGTTGTTACCATGGCTTTT 59.384 47.619 13.04 0.00 0.00 2.27
6 7 0.402504 TCCCGTTGTTACCATGGCTT 59.597 50.000 13.04 0.00 0.00 4.35
7 8 0.035439 CTCCCGTTGTTACCATGGCT 60.035 55.000 13.04 1.45 0.00 4.75
8 9 1.029947 CCTCCCGTTGTTACCATGGC 61.030 60.000 13.04 0.00 0.00 4.40
9 10 0.393808 CCCTCCCGTTGTTACCATGG 60.394 60.000 11.19 11.19 0.00 3.66
10 11 0.616371 TCCCTCCCGTTGTTACCATG 59.384 55.000 0.00 0.00 0.00 3.66
11 12 1.364269 TTCCCTCCCGTTGTTACCAT 58.636 50.000 0.00 0.00 0.00 3.55
12 13 1.364269 ATTCCCTCCCGTTGTTACCA 58.636 50.000 0.00 0.00 0.00 3.25
13 14 2.739609 CGTATTCCCTCCCGTTGTTACC 60.740 54.545 0.00 0.00 0.00 2.85
14 15 2.094026 ACGTATTCCCTCCCGTTGTTAC 60.094 50.000 0.00 0.00 0.00 2.50
15 16 2.178580 ACGTATTCCCTCCCGTTGTTA 58.821 47.619 0.00 0.00 0.00 2.41
16 17 0.978907 ACGTATTCCCTCCCGTTGTT 59.021 50.000 0.00 0.00 0.00 2.83
17 18 1.478105 GTACGTATTCCCTCCCGTTGT 59.522 52.381 0.00 0.00 34.95 3.32
18 19 1.534595 CGTACGTATTCCCTCCCGTTG 60.535 57.143 7.22 0.00 34.95 4.10
19 20 0.740737 CGTACGTATTCCCTCCCGTT 59.259 55.000 7.22 0.00 34.95 4.44
20 21 0.107214 TCGTACGTATTCCCTCCCGT 60.107 55.000 16.05 0.00 37.33 5.28
21 22 1.198637 GATCGTACGTATTCCCTCCCG 59.801 57.143 16.05 0.00 0.00 5.14
22 23 1.198637 CGATCGTACGTATTCCCTCCC 59.801 57.143 16.05 0.00 0.00 4.30
23 24 2.146342 TCGATCGTACGTATTCCCTCC 58.854 52.381 15.94 0.00 34.70 4.30
24 25 3.808095 CTTCGATCGTACGTATTCCCTC 58.192 50.000 15.94 1.77 34.70 4.30
25 26 2.031333 GCTTCGATCGTACGTATTCCCT 60.031 50.000 15.94 0.00 34.70 4.20
26 27 2.031333 AGCTTCGATCGTACGTATTCCC 60.031 50.000 15.94 0.15 34.70 3.97
27 28 2.971915 CAGCTTCGATCGTACGTATTCC 59.028 50.000 15.94 0.59 34.70 3.01
28 29 2.971915 CCAGCTTCGATCGTACGTATTC 59.028 50.000 15.94 9.93 34.70 1.75
29 30 2.615447 TCCAGCTTCGATCGTACGTATT 59.385 45.455 15.94 1.28 34.70 1.89
30 31 2.032204 GTCCAGCTTCGATCGTACGTAT 60.032 50.000 15.94 7.52 34.70 3.06
31 32 1.328680 GTCCAGCTTCGATCGTACGTA 59.671 52.381 15.94 2.34 34.70 3.57
32 33 0.098376 GTCCAGCTTCGATCGTACGT 59.902 55.000 15.94 2.33 34.70 3.57
33 34 0.098200 TGTCCAGCTTCGATCGTACG 59.902 55.000 15.94 9.53 0.00 3.67
34 35 1.534175 CCTGTCCAGCTTCGATCGTAC 60.534 57.143 15.94 5.86 0.00 3.67
35 36 0.738975 CCTGTCCAGCTTCGATCGTA 59.261 55.000 15.94 4.34 0.00 3.43
41 42 1.301677 GCTTTCCCTGTCCAGCTTCG 61.302 60.000 0.00 0.00 0.00 3.79
43 44 1.302832 CGCTTTCCCTGTCCAGCTT 60.303 57.895 0.00 0.00 0.00 3.74
46 47 1.237285 CCAACGCTTTCCCTGTCCAG 61.237 60.000 0.00 0.00 0.00 3.86
198 219 4.899239 GGGCCACTCTCATCCGCG 62.899 72.222 4.39 0.00 0.00 6.46
222 243 2.348140 GATCGGCGTGCGCTTTACTG 62.348 60.000 16.21 0.46 41.60 2.74
243 267 2.681778 ACCAGACCAGAGCGGAGG 60.682 66.667 0.00 0.00 38.63 4.30
244 268 2.716017 GGACCAGACCAGAGCGGAG 61.716 68.421 0.00 0.00 38.63 4.63
266 290 3.787001 GAAGGGGAGGCCGACCAG 61.787 72.222 20.39 0.00 39.06 4.00
270 294 4.348495 AAGGGAAGGGGAGGCCGA 62.348 66.667 0.00 0.00 0.00 5.54
271 295 4.115199 CAAGGGAAGGGGAGGCCG 62.115 72.222 0.00 0.00 0.00 6.13
272 296 4.448976 GCAAGGGAAGGGGAGGCC 62.449 72.222 0.00 0.00 0.00 5.19
273 297 4.448976 GGCAAGGGAAGGGGAGGC 62.449 72.222 0.00 0.00 0.00 4.70
274 298 3.744155 GGGCAAGGGAAGGGGAGG 61.744 72.222 0.00 0.00 0.00 4.30
278 302 4.740822 CACGGGGCAAGGGAAGGG 62.741 72.222 0.00 0.00 0.00 3.95
300 334 2.436646 ACAAAGATCTGCGGGGCG 60.437 61.111 0.00 0.00 0.00 6.13
301 335 2.409870 CCACAAAGATCTGCGGGGC 61.410 63.158 0.00 0.00 0.00 5.80
303 337 2.753966 CGCCACAAAGATCTGCGGG 61.754 63.158 14.68 7.38 41.42 6.13
348 385 1.671379 GGAAATATCTCGCCCCGCC 60.671 63.158 0.00 0.00 0.00 6.13
349 386 1.070786 TGGAAATATCTCGCCCCGC 59.929 57.895 0.00 0.00 0.00 6.13
350 387 0.602905 GGTGGAAATATCTCGCCCCG 60.603 60.000 0.00 0.00 0.00 5.73
351 388 0.250770 GGGTGGAAATATCTCGCCCC 60.251 60.000 9.25 0.00 39.10 5.80
352 389 0.250770 GGGGTGGAAATATCTCGCCC 60.251 60.000 11.11 11.11 41.84 6.13
353 390 0.250770 GGGGGTGGAAATATCTCGCC 60.251 60.000 0.00 0.00 34.48 5.54
354 391 0.602905 CGGGGGTGGAAATATCTCGC 60.603 60.000 0.00 0.00 0.00 5.03
355 392 0.602905 GCGGGGGTGGAAATATCTCG 60.603 60.000 0.00 0.00 0.00 4.04
356 393 0.602905 CGCGGGGGTGGAAATATCTC 60.603 60.000 0.00 0.00 0.00 2.75
357 394 1.450211 CGCGGGGGTGGAAATATCT 59.550 57.895 0.00 0.00 0.00 1.98
358 395 2.258726 GCGCGGGGGTGGAAATATC 61.259 63.158 8.83 0.00 0.00 1.63
359 396 2.203294 GCGCGGGGGTGGAAATAT 60.203 61.111 8.83 0.00 0.00 1.28
360 397 4.493049 GGCGCGGGGGTGGAAATA 62.493 66.667 8.83 0.00 0.00 1.40
447 518 2.568546 TATCAGGGGAGAGGCAAAGA 57.431 50.000 0.00 0.00 0.00 2.52
448 519 3.872459 AATATCAGGGGAGAGGCAAAG 57.128 47.619 0.00 0.00 0.00 2.77
449 520 3.902218 CAAATATCAGGGGAGAGGCAAA 58.098 45.455 0.00 0.00 0.00 3.68
450 521 2.423373 GCAAATATCAGGGGAGAGGCAA 60.423 50.000 0.00 0.00 0.00 4.52
451 522 1.143684 GCAAATATCAGGGGAGAGGCA 59.856 52.381 0.00 0.00 0.00 4.75
452 523 1.879796 CGCAAATATCAGGGGAGAGGC 60.880 57.143 0.00 0.00 0.00 4.70
453 524 1.271054 CCGCAAATATCAGGGGAGAGG 60.271 57.143 4.91 0.00 40.00 3.69
454 525 1.271054 CCCGCAAATATCAGGGGAGAG 60.271 57.143 10.82 0.00 40.51 3.20
455 526 0.764890 CCCGCAAATATCAGGGGAGA 59.235 55.000 10.82 0.00 40.51 3.71
456 527 0.890996 GCCCGCAAATATCAGGGGAG 60.891 60.000 10.82 4.27 43.95 4.30
461 532 1.230635 CCTCCGCCCGCAAATATCAG 61.231 60.000 0.00 0.00 0.00 2.90
543 636 4.144727 GAGCGGAGGGAGGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
562 655 0.882484 GGGAGAGAAATAGCAGCGGC 60.882 60.000 0.00 0.00 41.61 6.53
577 670 4.862823 GACGGGAGGGGAGGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
592 685 3.139469 GGTCTCTCCGGACGGGAC 61.139 72.222 19.80 19.80 40.94 4.46
593 686 3.654143 TGGTCTCTCCGGACGGGA 61.654 66.667 11.27 0.00 44.68 5.14
594 687 3.450115 GTGGTCTCTCCGGACGGG 61.450 72.222 11.27 0.00 39.52 5.28
595 688 3.812019 CGTGGTCTCTCCGGACGG 61.812 72.222 0.00 3.96 39.52 4.79
596 689 4.477975 GCGTGGTCTCTCCGGACG 62.478 72.222 0.00 1.87 38.24 4.79
597 690 4.131088 GGCGTGGTCTCTCCGGAC 62.131 72.222 0.00 0.00 39.52 4.79
630 737 0.895559 GCGGGGATGGGATGGAAATC 60.896 60.000 0.00 0.00 0.00 2.17
655 762 4.306471 ATCGAGCGAGCGAGCGAG 62.306 66.667 13.62 0.41 44.26 5.03
671 778 2.556459 CGACGGAGGGCAGATCGAT 61.556 63.158 0.00 0.00 34.77 3.59
751 858 1.024579 GGCGCGGAAGAGATTTGGAA 61.025 55.000 8.83 0.00 0.00 3.53
786 899 1.821332 GAATTGAGCCCGCCTGGAG 60.821 63.158 0.00 0.00 37.49 3.86
787 900 2.135903 TTGAATTGAGCCCGCCTGGA 62.136 55.000 0.00 0.00 37.49 3.86
788 901 1.660560 CTTGAATTGAGCCCGCCTGG 61.661 60.000 0.00 0.00 37.09 4.45
789 902 1.660560 CCTTGAATTGAGCCCGCCTG 61.661 60.000 0.00 0.00 0.00 4.85
790 903 1.379044 CCTTGAATTGAGCCCGCCT 60.379 57.895 0.00 0.00 0.00 5.52
817 930 3.330998 GGAAGGAAGGAAGGAAGGAAGAA 59.669 47.826 0.00 0.00 0.00 2.52
821 934 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
828 941 2.713595 TCCAAGGAAGGAAGGAAGGAA 58.286 47.619 0.00 0.00 33.93 3.36
832 945 2.846827 GGAGATCCAAGGAAGGAAGGAA 59.153 50.000 0.00 0.00 41.92 3.36
833 946 2.046447 AGGAGATCCAAGGAAGGAAGGA 59.954 50.000 0.92 0.00 41.92 3.36
834 947 2.486716 AGGAGATCCAAGGAAGGAAGG 58.513 52.381 0.92 0.00 41.92 3.46
835 948 3.118075 GGAAGGAGATCCAAGGAAGGAAG 60.118 52.174 0.92 0.00 41.92 3.46
836 949 2.846827 GGAAGGAGATCCAAGGAAGGAA 59.153 50.000 0.92 0.00 41.92 3.36
837 950 2.482494 GGAAGGAGATCCAAGGAAGGA 58.518 52.381 0.92 0.00 43.01 3.36
838 951 1.492599 GGGAAGGAGATCCAAGGAAGG 59.507 57.143 0.92 0.00 41.55 3.46
839 952 1.139853 CGGGAAGGAGATCCAAGGAAG 59.860 57.143 0.92 0.00 41.55 3.46
841 954 1.338136 GCGGGAAGGAGATCCAAGGA 61.338 60.000 0.92 0.00 41.55 3.36
920 1047 1.375523 GGAACGGATTCGCCTGTGT 60.376 57.895 0.00 0.00 40.63 3.72
945 1072 1.690633 GGGATGGACAGGCAGAGGA 60.691 63.158 0.00 0.00 0.00 3.71
973 1100 3.093057 TCTACTTGTCAGGAGAAGGAGC 58.907 50.000 12.35 0.00 41.14 4.70
993 1122 0.179000 ACACCTCGCCCATCTGATTC 59.821 55.000 0.00 0.00 0.00 2.52
994 1123 1.139058 GTACACCTCGCCCATCTGATT 59.861 52.381 0.00 0.00 0.00 2.57
1026 1160 4.400961 GCTGGCTCCGGCTTGACT 62.401 66.667 12.30 0.00 44.39 3.41
1106 1241 9.486497 CATCACACACTGCTAGATAGATAAAAT 57.514 33.333 0.00 0.00 0.00 1.82
1108 1243 6.925718 GCATCACACACTGCTAGATAGATAAA 59.074 38.462 0.00 0.00 35.49 1.40
1111 1246 4.343239 TGCATCACACACTGCTAGATAGAT 59.657 41.667 0.00 0.00 39.16 1.98
1113 1248 4.050852 TGCATCACACACTGCTAGATAG 57.949 45.455 0.00 0.00 39.16 2.08
1115 1250 3.118519 TCATGCATCACACACTGCTAGAT 60.119 43.478 0.00 0.00 39.16 1.98
1116 1251 2.234414 TCATGCATCACACACTGCTAGA 59.766 45.455 0.00 0.00 39.16 2.43
1117 1252 2.624636 TCATGCATCACACACTGCTAG 58.375 47.619 0.00 0.00 39.16 3.42
1157 1341 9.449719 GGACCATGGAAATTACTCGATATTATT 57.550 33.333 21.47 0.00 0.00 1.40
1158 1342 8.602424 TGGACCATGGAAATTACTCGATATTAT 58.398 33.333 21.47 0.00 0.00 1.28
1159 1343 7.876068 GTGGACCATGGAAATTACTCGATATTA 59.124 37.037 21.47 0.00 0.00 0.98
1160 1344 6.710744 GTGGACCATGGAAATTACTCGATATT 59.289 38.462 21.47 0.00 0.00 1.28
1161 1345 6.043243 AGTGGACCATGGAAATTACTCGATAT 59.957 38.462 21.47 0.00 0.00 1.63
1162 1346 5.365605 AGTGGACCATGGAAATTACTCGATA 59.634 40.000 21.47 0.00 0.00 2.92
1163 1347 4.164221 AGTGGACCATGGAAATTACTCGAT 59.836 41.667 21.47 0.00 0.00 3.59
1164 1348 3.517901 AGTGGACCATGGAAATTACTCGA 59.482 43.478 21.47 0.00 0.00 4.04
1165 1349 3.623060 CAGTGGACCATGGAAATTACTCG 59.377 47.826 21.47 6.60 0.00 4.18
1166 1350 4.589908 ACAGTGGACCATGGAAATTACTC 58.410 43.478 21.47 2.84 0.00 2.59
1167 1351 4.657814 ACAGTGGACCATGGAAATTACT 57.342 40.909 21.47 11.86 0.00 2.24
1170 1354 2.299867 GCAACAGTGGACCATGGAAATT 59.700 45.455 21.47 0.00 0.00 1.82
1183 1367 3.733337 AGAAGAGTGGTAAGCAACAGTG 58.267 45.455 0.00 0.00 0.00 3.66
1185 1369 4.636249 AGAAGAAGAGTGGTAAGCAACAG 58.364 43.478 0.00 0.00 0.00 3.16
1203 1387 9.401058 AGTAATATTGGTCCTTGAATTGAGAAG 57.599 33.333 0.00 0.00 0.00 2.85
1227 1411 6.316390 GCCTTGCTGTTATGAACATAGTAAGT 59.684 38.462 10.52 0.00 41.26 2.24
1228 1412 6.238484 GGCCTTGCTGTTATGAACATAGTAAG 60.238 42.308 0.00 0.00 41.26 2.34
1232 1416 3.947196 TGGCCTTGCTGTTATGAACATAG 59.053 43.478 3.32 0.00 41.26 2.23
1234 1418 2.806434 TGGCCTTGCTGTTATGAACAT 58.194 42.857 3.32 0.00 41.26 2.71
1235 1419 2.284754 TGGCCTTGCTGTTATGAACA 57.715 45.000 3.32 0.00 39.52 3.18
1238 1422 2.819608 GTTCTTGGCCTTGCTGTTATGA 59.180 45.455 3.32 0.00 0.00 2.15
1240 1424 2.875296 TGTTCTTGGCCTTGCTGTTAT 58.125 42.857 3.32 0.00 0.00 1.89
1242 1426 1.484038 TTGTTCTTGGCCTTGCTGTT 58.516 45.000 3.32 0.00 0.00 3.16
1244 1428 1.269936 CCTTTGTTCTTGGCCTTGCTG 60.270 52.381 3.32 0.00 0.00 4.41
1245 1429 1.043022 CCTTTGTTCTTGGCCTTGCT 58.957 50.000 3.32 0.00 0.00 3.91
1246 1430 1.039856 TCCTTTGTTCTTGGCCTTGC 58.960 50.000 3.32 0.00 0.00 4.01
1247 1431 4.321974 GGTATTCCTTTGTTCTTGGCCTTG 60.322 45.833 3.32 0.00 0.00 3.61
1248 1432 3.832490 GGTATTCCTTTGTTCTTGGCCTT 59.168 43.478 3.32 0.00 0.00 4.35
1249 1433 3.431415 GGTATTCCTTTGTTCTTGGCCT 58.569 45.455 3.32 0.00 0.00 5.19
1250 1434 2.496070 GGGTATTCCTTTGTTCTTGGCC 59.504 50.000 0.00 0.00 0.00 5.36
1251 1435 3.431415 AGGGTATTCCTTTGTTCTTGGC 58.569 45.455 0.00 0.00 45.47 4.52
1252 1436 7.547227 CATTTAGGGTATTCCTTTGTTCTTGG 58.453 38.462 0.00 0.00 45.47 3.61
1253 1437 7.035612 GCATTTAGGGTATTCCTTTGTTCTTG 58.964 38.462 0.00 0.00 45.47 3.02
1254 1438 6.954102 AGCATTTAGGGTATTCCTTTGTTCTT 59.046 34.615 0.00 0.00 45.47 2.52
1255 1439 6.494059 AGCATTTAGGGTATTCCTTTGTTCT 58.506 36.000 0.00 0.00 45.47 3.01
1256 1440 6.775594 AGCATTTAGGGTATTCCTTTGTTC 57.224 37.500 0.00 0.00 45.47 3.18
1257 1441 7.553504 AAAGCATTTAGGGTATTCCTTTGTT 57.446 32.000 0.00 0.00 45.47 2.83
1258 1442 8.528643 GTTAAAGCATTTAGGGTATTCCTTTGT 58.471 33.333 0.00 0.00 46.86 2.83
1259 1443 8.527810 TGTTAAAGCATTTAGGGTATTCCTTTG 58.472 33.333 0.00 0.00 46.86 2.77
1260 1444 8.528643 GTGTTAAAGCATTTAGGGTATTCCTTT 58.471 33.333 0.00 0.00 46.86 3.11
1261 1445 7.123697 GGTGTTAAAGCATTTAGGGTATTCCTT 59.876 37.037 0.00 0.00 46.86 3.36
1263 1447 6.183360 GGGTGTTAAAGCATTTAGGGTATTCC 60.183 42.308 0.00 0.00 42.24 3.01
1264 1448 6.459161 CGGGTGTTAAAGCATTTAGGGTATTC 60.459 42.308 0.00 0.00 42.24 1.75
1265 1449 5.358725 CGGGTGTTAAAGCATTTAGGGTATT 59.641 40.000 0.00 0.00 42.24 1.89
1266 1450 4.885325 CGGGTGTTAAAGCATTTAGGGTAT 59.115 41.667 0.00 0.00 42.24 2.73
1267 1451 4.263418 ACGGGTGTTAAAGCATTTAGGGTA 60.263 41.667 0.00 0.00 42.24 3.69
1268 1452 3.086282 CGGGTGTTAAAGCATTTAGGGT 58.914 45.455 0.00 0.00 42.24 4.34
1269 1453 3.086282 ACGGGTGTTAAAGCATTTAGGG 58.914 45.455 0.00 0.00 42.24 3.53
1270 1454 4.022676 ACAACGGGTGTTAAAGCATTTAGG 60.023 41.667 0.00 0.00 42.24 2.69
1271 1455 5.116069 ACAACGGGTGTTAAAGCATTTAG 57.884 39.130 0.00 0.00 42.24 1.85
1283 1467 1.741145 GTTCAGACAAACAACGGGTGT 59.259 47.619 0.00 0.00 44.64 4.16
1284 1468 1.064952 GGTTCAGACAAACAACGGGTG 59.935 52.381 0.00 0.00 0.00 4.61
1285 1469 1.385528 GGTTCAGACAAACAACGGGT 58.614 50.000 0.00 0.00 0.00 5.28
1286 1470 0.306533 CGGTTCAGACAAACAACGGG 59.693 55.000 0.00 0.00 0.00 5.28
1287 1471 1.004292 GACGGTTCAGACAAACAACGG 60.004 52.381 0.00 0.00 0.00 4.44
1288 1472 1.661617 TGACGGTTCAGACAAACAACG 59.338 47.619 0.00 0.00 0.00 4.10
1289 1473 2.536130 CGTGACGGTTCAGACAAACAAC 60.536 50.000 0.00 0.00 30.10 3.32
1303 1489 2.474266 CGAACAATGGCGTGACGG 59.526 61.111 7.25 0.00 0.00 4.79
1309 1495 0.447801 CCTCTTTCCGAACAATGGCG 59.552 55.000 0.00 0.00 0.00 5.69
1380 1586 4.098722 AGCAGGAGCAGGAGCAGC 62.099 66.667 0.00 0.00 45.49 5.25
1381 1587 2.187424 GAGCAGGAGCAGGAGCAG 59.813 66.667 0.00 0.00 45.49 4.24
1382 1588 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
1383 1589 3.082701 AGGAGCAGGAGCAGGAGC 61.083 66.667 0.00 0.00 45.49 4.70
1384 1590 2.901813 CAGGAGCAGGAGCAGGAG 59.098 66.667 0.00 0.00 45.49 3.69
1385 1591 3.397439 GCAGGAGCAGGAGCAGGA 61.397 66.667 0.00 0.00 45.49 3.86
1386 1592 3.388703 GAGCAGGAGCAGGAGCAGG 62.389 68.421 0.00 0.00 45.49 4.85
1387 1593 2.187424 GAGCAGGAGCAGGAGCAG 59.813 66.667 0.00 0.00 45.49 4.24
1388 1594 3.767806 CGAGCAGGAGCAGGAGCA 61.768 66.667 0.00 0.00 45.49 4.26
1389 1595 1.949847 TAACGAGCAGGAGCAGGAGC 61.950 60.000 0.00 0.00 45.49 4.70
1390 1596 0.749649 ATAACGAGCAGGAGCAGGAG 59.250 55.000 0.00 0.00 45.49 3.69
1391 1597 0.461548 CATAACGAGCAGGAGCAGGA 59.538 55.000 0.00 0.00 45.49 3.86
1392 1598 0.176680 ACATAACGAGCAGGAGCAGG 59.823 55.000 0.00 0.00 45.49 4.85
1430 1654 0.508641 CGAGACTGGTGCTGTTTTCG 59.491 55.000 0.00 0.00 0.00 3.46
1455 1679 9.377312 GTAGCATTTTCCAAATTTATTTAGCCA 57.623 29.630 0.00 0.00 0.00 4.75
1456 1680 8.826710 GGTAGCATTTTCCAAATTTATTTAGCC 58.173 33.333 0.00 0.00 0.00 3.93
1457 1681 9.377312 TGGTAGCATTTTCCAAATTTATTTAGC 57.623 29.630 0.00 0.00 0.00 3.09
1460 1684 9.218440 CAGTGGTAGCATTTTCCAAATTTATTT 57.782 29.630 0.00 0.00 32.82 1.40
1463 1687 7.151308 CACAGTGGTAGCATTTTCCAAATTTA 58.849 34.615 0.00 0.00 32.82 1.40
1482 1709 0.607217 TCATGCTCAAGGCCACAGTG 60.607 55.000 5.01 0.00 40.92 3.66
1484 1711 1.471119 ATTCATGCTCAAGGCCACAG 58.529 50.000 5.01 0.00 40.92 3.66
1489 1716 2.288666 TCGGTAATTCATGCTCAAGGC 58.711 47.619 0.00 0.00 42.22 4.35
1515 1742 1.897560 ATATAAAGCGGGGCTGAAGC 58.102 50.000 0.00 0.00 39.62 3.86
1516 1743 7.308782 CTTTATATATAAAGCGGGGCTGAAG 57.691 40.000 25.10 5.48 41.69 3.02
1529 1756 9.658799 GCTCAAGGATCTGTGCTTTATATATAA 57.341 33.333 0.81 0.81 33.29 0.98
1530 1757 8.815912 TGCTCAAGGATCTGTGCTTTATATATA 58.184 33.333 9.53 0.00 36.88 0.86
1531 1758 7.683578 TGCTCAAGGATCTGTGCTTTATATAT 58.316 34.615 9.53 0.00 36.88 0.86
1532 1759 7.066307 TGCTCAAGGATCTGTGCTTTATATA 57.934 36.000 9.53 0.00 36.88 0.86
1533 1760 5.933617 TGCTCAAGGATCTGTGCTTTATAT 58.066 37.500 9.53 0.00 36.88 0.86
1534 1761 5.357742 TGCTCAAGGATCTGTGCTTTATA 57.642 39.130 9.53 0.00 36.88 0.98
1535 1762 4.226427 TGCTCAAGGATCTGTGCTTTAT 57.774 40.909 9.53 0.00 36.88 1.40
1536 1763 3.701205 TGCTCAAGGATCTGTGCTTTA 57.299 42.857 9.53 0.00 36.88 1.85
1537 1764 2.574006 TGCTCAAGGATCTGTGCTTT 57.426 45.000 9.53 0.00 36.88 3.51
1538 1765 2.026542 TCATGCTCAAGGATCTGTGCTT 60.027 45.455 9.53 2.40 36.88 3.91
1539 1766 1.558294 TCATGCTCAAGGATCTGTGCT 59.442 47.619 9.53 0.00 36.88 4.40
1540 1767 2.034104 TCATGCTCAAGGATCTGTGC 57.966 50.000 0.00 0.00 36.56 4.57
1541 1768 5.578005 AAATTCATGCTCAAGGATCTGTG 57.422 39.130 0.00 0.00 0.00 3.66
1542 1769 5.105473 CCAAAATTCATGCTCAAGGATCTGT 60.105 40.000 0.00 0.00 0.00 3.41
1543 1770 5.126545 TCCAAAATTCATGCTCAAGGATCTG 59.873 40.000 0.00 0.00 0.00 2.90
1544 1771 5.266788 TCCAAAATTCATGCTCAAGGATCT 58.733 37.500 0.00 0.00 0.00 2.75
1545 1772 5.587388 TCCAAAATTCATGCTCAAGGATC 57.413 39.130 0.00 0.00 0.00 3.36
1546 1773 5.070047 GGATCCAAAATTCATGCTCAAGGAT 59.930 40.000 6.95 0.00 36.15 3.24
1547 1774 4.403432 GGATCCAAAATTCATGCTCAAGGA 59.597 41.667 6.95 0.00 0.00 3.36
1548 1775 4.442472 GGGATCCAAAATTCATGCTCAAGG 60.442 45.833 15.23 0.00 0.00 3.61
1549 1776 4.404715 AGGGATCCAAAATTCATGCTCAAG 59.595 41.667 15.23 0.00 0.00 3.02
1550 1777 4.160814 CAGGGATCCAAAATTCATGCTCAA 59.839 41.667 15.23 0.00 0.00 3.02
1551 1778 3.702548 CAGGGATCCAAAATTCATGCTCA 59.297 43.478 15.23 0.00 0.00 4.26
1552 1779 3.492137 GCAGGGATCCAAAATTCATGCTC 60.492 47.826 15.23 0.00 0.00 4.26
1553 1780 2.433239 GCAGGGATCCAAAATTCATGCT 59.567 45.455 15.23 0.00 0.00 3.79
1554 1781 2.433239 AGCAGGGATCCAAAATTCATGC 59.567 45.455 15.23 9.70 0.00 4.06
1555 1782 4.748277 AAGCAGGGATCCAAAATTCATG 57.252 40.909 15.23 0.06 0.00 3.07
1556 1783 5.960202 AGTAAAGCAGGGATCCAAAATTCAT 59.040 36.000 15.23 0.00 0.00 2.57
1557 1784 5.332743 AGTAAAGCAGGGATCCAAAATTCA 58.667 37.500 15.23 0.00 0.00 2.57
1558 1785 5.921962 AGTAAAGCAGGGATCCAAAATTC 57.078 39.130 15.23 0.00 0.00 2.17
1559 1786 6.269769 TGAAAGTAAAGCAGGGATCCAAAATT 59.730 34.615 15.23 4.29 0.00 1.82
1560 1787 5.779771 TGAAAGTAAAGCAGGGATCCAAAAT 59.220 36.000 15.23 0.00 0.00 1.82
1561 1788 5.144100 TGAAAGTAAAGCAGGGATCCAAAA 58.856 37.500 15.23 0.00 0.00 2.44
1562 1789 4.735369 TGAAAGTAAAGCAGGGATCCAAA 58.265 39.130 15.23 0.00 0.00 3.28
1563 1790 4.380843 TGAAAGTAAAGCAGGGATCCAA 57.619 40.909 15.23 0.00 0.00 3.53
1571 1798 6.902341 TGCTAACAAGATGAAAGTAAAGCAG 58.098 36.000 0.00 0.00 32.72 4.24
1573 1800 7.133891 TCTGCTAACAAGATGAAAGTAAAGC 57.866 36.000 0.00 0.00 0.00 3.51
1586 1813 4.878397 CAGGGGTAGAAATCTGCTAACAAG 59.122 45.833 0.00 0.00 0.00 3.16
1592 1819 2.270434 TCCAGGGGTAGAAATCTGCT 57.730 50.000 0.00 0.00 0.00 4.24
1594 1821 9.640952 TTATTAATTTCCAGGGGTAGAAATCTG 57.359 33.333 0.00 0.00 40.84 2.90
1600 1827 8.165267 TCAGTTTATTAATTTCCAGGGGTAGA 57.835 34.615 0.00 0.00 0.00 2.59
1601 1828 8.996651 ATCAGTTTATTAATTTCCAGGGGTAG 57.003 34.615 0.00 0.00 0.00 3.18
1608 1835 9.249053 TGGCACTAATCAGTTTATTAATTTCCA 57.751 29.630 0.00 0.00 30.46 3.53
1609 1836 9.516314 GTGGCACTAATCAGTTTATTAATTTCC 57.484 33.333 11.13 0.00 30.46 3.13
1611 1838 9.030452 TGGTGGCACTAATCAGTTTATTAATTT 57.970 29.630 18.45 0.00 30.46 1.82
1613 1840 8.632679 CATGGTGGCACTAATCAGTTTATTAAT 58.367 33.333 18.45 0.00 30.46 1.40
1614 1841 7.613801 ACATGGTGGCACTAATCAGTTTATTAA 59.386 33.333 18.45 0.00 30.46 1.40
1615 1842 7.116075 ACATGGTGGCACTAATCAGTTTATTA 58.884 34.615 18.45 0.00 30.46 0.98
1632 1859 3.243501 CCTGTCAAAGAACAACATGGTGG 60.244 47.826 16.70 0.00 0.00 4.61
1635 1862 2.288395 GCCCTGTCAAAGAACAACATGG 60.288 50.000 0.00 0.00 33.40 3.66
1665 1892 0.742505 CCGCCGACATCAGGTTAGTA 59.257 55.000 0.00 0.00 0.00 1.82
1758 1985 1.155424 TCTTGTTCGCGTTGTGTCCC 61.155 55.000 5.77 0.00 0.00 4.46
1761 1988 2.004017 TCTTTCTTGTTCGCGTTGTGT 58.996 42.857 5.77 0.00 0.00 3.72
1762 1989 2.730183 TCTTTCTTGTTCGCGTTGTG 57.270 45.000 5.77 0.00 0.00 3.33
2031 2261 1.818674 CAAGTTCCCAATTCCCTTCCG 59.181 52.381 0.00 0.00 0.00 4.30
2047 2277 0.480252 AGGCTTTCTCCCTTGCAAGT 59.520 50.000 24.35 0.00 0.00 3.16
2063 2293 3.691609 ACCTGAATTTTCATCGAGAAGGC 59.308 43.478 0.00 0.00 37.57 4.35
2087 2317 9.620259 AAGATTAAAGGAACTAATTGAGCTAGG 57.380 33.333 0.00 0.00 38.49 3.02
2109 2342 8.574737 GCATCTTCCATAAAATCAGCTAAAGAT 58.425 33.333 0.00 0.00 32.67 2.40
2111 2344 7.709947 TGCATCTTCCATAAAATCAGCTAAAG 58.290 34.615 0.00 0.00 0.00 1.85
2162 2435 0.319728 CAGCGCCCATAGCTATCTGT 59.680 55.000 2.29 0.00 44.06 3.41
2173 2446 0.600557 CCATAAAACAACAGCGCCCA 59.399 50.000 2.29 0.00 0.00 5.36
2222 2496 5.856156 ACATGGCATCAGAAATTTTGTTCA 58.144 33.333 0.00 0.00 0.00 3.18
2227 2501 7.001099 AGAGAAACATGGCATCAGAAATTTT 57.999 32.000 0.00 0.00 0.00 1.82
2287 2561 1.961277 CGCCAACTTCTGCCTCGTT 60.961 57.895 0.00 0.00 0.00 3.85
2335 2609 4.363991 AAGTGGAAGAACTGCTCAATCT 57.636 40.909 0.00 0.00 0.00 2.40
2364 2638 4.951254 TGTAAACTCACTGGATCGTTTGA 58.049 39.130 4.90 0.00 32.46 2.69
2380 2654 8.768955 CAGACTATGCTAATTGATCCTGTAAAC 58.231 37.037 0.00 0.00 0.00 2.01
2604 2881 1.508632 CGGACCACACAATCGACTTT 58.491 50.000 0.00 0.00 0.00 2.66
2620 2897 0.397957 TAATGGGGCACTAGAGCGGA 60.398 55.000 6.06 0.00 34.64 5.54
2621 2898 0.687354 ATAATGGGGCACTAGAGCGG 59.313 55.000 6.06 0.00 34.64 5.52
2622 2899 1.344438 TCATAATGGGGCACTAGAGCG 59.656 52.381 6.06 0.00 34.64 5.03
2623 2900 2.289945 CCTCATAATGGGGCACTAGAGC 60.290 54.545 3.21 3.21 26.78 4.09
2624 2901 3.242867 TCCTCATAATGGGGCACTAGAG 58.757 50.000 0.00 0.00 38.12 2.43
2625 2902 3.344535 TCCTCATAATGGGGCACTAGA 57.655 47.619 0.00 0.00 38.12 2.43
2626 2903 3.136443 TGTTCCTCATAATGGGGCACTAG 59.864 47.826 0.00 0.00 38.12 2.57
2702 2979 9.352784 ACAACATTTCATTACATCCGTAAAATG 57.647 29.630 0.00 0.00 40.89 2.32
2703 2980 9.921637 AACAACATTTCATTACATCCGTAAAAT 57.078 25.926 0.00 0.00 40.89 1.82
2918 3241 1.996292 TTTCGCTCGTTCCAGATCTG 58.004 50.000 16.24 16.24 0.00 2.90
2919 3242 2.544685 CATTTCGCTCGTTCCAGATCT 58.455 47.619 0.00 0.00 0.00 2.75
2920 3243 1.004504 GCATTTCGCTCGTTCCAGATC 60.005 52.381 0.00 0.00 37.77 2.75
2921 3244 1.009829 GCATTTCGCTCGTTCCAGAT 58.990 50.000 0.00 0.00 37.77 2.90
2922 3245 1.019278 GGCATTTCGCTCGTTCCAGA 61.019 55.000 0.00 0.00 41.91 3.86
2923 3246 1.425428 GGCATTTCGCTCGTTCCAG 59.575 57.895 0.00 0.00 41.91 3.86
2924 3247 2.038269 GGGCATTTCGCTCGTTCCA 61.038 57.895 0.00 0.00 41.91 3.53
2925 3248 2.791927 GGGCATTTCGCTCGTTCC 59.208 61.111 0.00 0.00 41.91 3.62
2934 3257 0.037697 GGGAAACAACCGGGCATTTC 60.038 55.000 6.32 11.93 0.00 2.17
2966 3289 1.079127 CGTACAGTGGCCAGAAGGG 60.079 63.158 5.11 0.00 40.85 3.95
3021 3846 6.035975 CACCAAATGTTCTTTTCAACAACTCC 59.964 38.462 0.00 0.00 39.69 3.85
3023 3848 5.351189 GCACCAAATGTTCTTTTCAACAACT 59.649 36.000 0.00 0.00 39.69 3.16
3024 3849 5.121454 TGCACCAAATGTTCTTTTCAACAAC 59.879 36.000 0.00 0.00 39.69 3.32
3061 3887 3.417069 TGTTCCTACCACACATTCCAG 57.583 47.619 0.00 0.00 0.00 3.86
3189 4016 2.238646 TCCATGTAACTCGGGAGCAAAT 59.761 45.455 0.00 0.00 0.00 2.32
3201 4028 4.595986 TCCTAAAAAGGGCTCCATGTAAC 58.404 43.478 0.00 0.00 0.00 2.50
3202 4029 4.938575 TCCTAAAAAGGGCTCCATGTAA 57.061 40.909 0.00 0.00 0.00 2.41
3203 4030 4.938575 TTCCTAAAAAGGGCTCCATGTA 57.061 40.909 0.00 0.00 0.00 2.29
3204 4031 3.825908 TTCCTAAAAAGGGCTCCATGT 57.174 42.857 0.00 0.00 0.00 3.21
3205 4032 5.482163 TTTTTCCTAAAAAGGGCTCCATG 57.518 39.130 0.00 0.00 35.84 3.66
3298 4132 8.316946 TCATCACTGAGATTCTACAGAAATGTT 58.683 33.333 15.56 2.49 37.61 2.71
3314 4148 6.709397 ACACCATAGCATATTTCATCACTGAG 59.291 38.462 0.00 0.00 31.68 3.35
3318 4152 6.567321 GCTCACACCATAGCATATTTCATCAC 60.567 42.308 0.00 0.00 38.63 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.