Multiple sequence alignment - TraesCS4B01G300000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G300000 chr4B 100.000 6496 0 0 1 6496 586470824 586464329 0.000000e+00 11996.0
1 TraesCS4B01G300000 chr4B 82.155 919 107 32 3518 4410 537825982 537825095 0.000000e+00 736.0
2 TraesCS4B01G300000 chr4B 81.905 420 52 15 4491 4903 537825060 537824658 3.750000e-87 333.0
3 TraesCS4B01G300000 chr4B 88.889 234 24 1 3027 3258 537827564 537827331 2.960000e-73 287.0
4 TraesCS4B01G300000 chr4D 88.942 5182 346 110 624 5709 468217413 468212363 0.000000e+00 6185.0
5 TraesCS4B01G300000 chr4D 90.716 754 51 10 5758 6496 468212361 468211612 0.000000e+00 987.0
6 TraesCS4B01G300000 chr4D 92.449 543 27 8 1 538 493013411 493013944 0.000000e+00 763.0
7 TraesCS4B01G300000 chr4D 83.736 455 54 9 2292 2746 436373234 436372800 4.690000e-111 412.0
8 TraesCS4B01G300000 chr4D 79.955 444 56 18 3022 3436 436316036 436315597 4.920000e-76 296.0
9 TraesCS4B01G300000 chr4D 79.730 444 57 19 3022 3436 436281712 436281273 2.290000e-74 291.0
10 TraesCS4B01G300000 chr4D 79.730 444 57 19 3022 3436 436299090 436298651 2.290000e-74 291.0
11 TraesCS4B01G300000 chr4A 89.355 3936 253 73 618 4455 3142174 3146041 0.000000e+00 4795.0
12 TraesCS4B01G300000 chr4A 85.855 1018 90 29 4495 5505 3146356 3147326 0.000000e+00 1033.0
13 TraesCS4B01G300000 chr4A 92.042 666 35 7 5839 6496 3147524 3148179 0.000000e+00 920.0
14 TraesCS4B01G300000 chr4A 87.288 236 30 0 3022 3257 31771904 31772139 2.990000e-68 270.0
15 TraesCS4B01G300000 chr4A 83.000 200 22 9 3243 3436 31772157 31772350 3.110000e-38 171.0
16 TraesCS4B01G300000 chr2A 84.582 934 94 36 3751 4667 4011832 4012732 0.000000e+00 881.0
17 TraesCS4B01G300000 chr5A 83.566 931 87 40 3751 4667 11943765 11944643 0.000000e+00 811.0
18 TraesCS4B01G300000 chr5A 92.081 543 25 12 1 538 626202562 626203091 0.000000e+00 749.0
19 TraesCS4B01G300000 chr2B 92.279 544 31 7 1 538 82353036 82353574 0.000000e+00 761.0
20 TraesCS4B01G300000 chr7A 92.066 542 29 10 1 537 563485248 563485780 0.000000e+00 750.0
21 TraesCS4B01G300000 chr7A 82.184 522 73 12 3578 4098 698678662 698678160 1.290000e-116 431.0
22 TraesCS4B01G300000 chr3D 91.897 543 30 8 1 537 4843393 4843927 0.000000e+00 747.0
23 TraesCS4B01G300000 chr3D 91.376 545 30 10 1 538 578750017 578749483 0.000000e+00 730.0
24 TraesCS4B01G300000 chr3D 87.755 196 23 1 2591 2785 562673634 562673829 1.820000e-55 228.0
25 TraesCS4B01G300000 chr1B 91.728 544 31 10 1 538 7580925 7581460 0.000000e+00 743.0
26 TraesCS4B01G300000 chr1B 91.544 544 32 9 1 538 594055506 594054971 0.000000e+00 737.0
27 TraesCS4B01G300000 chr1B 96.875 32 1 0 4316 4347 68137439 68137408 3.000000e-03 54.7
28 TraesCS4B01G300000 chr3A 91.544 544 31 9 1 538 65762475 65763009 0.000000e+00 736.0
29 TraesCS4B01G300000 chr6A 81.509 530 82 11 3571 4098 591438670 591438155 7.790000e-114 422.0
30 TraesCS4B01G300000 chr7D 80.605 562 93 12 3539 4098 93790346 93789799 2.800000e-113 420.0
31 TraesCS4B01G300000 chr7D 81.629 528 77 14 3572 4098 606636866 606637374 2.800000e-113 420.0
32 TraesCS4B01G300000 chr6D 80.943 530 85 11 3571 4098 443848602 443848087 7.840000e-109 405.0
33 TraesCS4B01G300000 chr7B 81.226 522 78 12 3578 4098 690754202 690753700 2.820000e-108 403.0
34 TraesCS4B01G300000 chr7B 88.482 191 19 3 2597 2785 610507312 610507123 1.820000e-55 228.0
35 TraesCS4B01G300000 chr7B 85.135 74 11 0 4177 4250 76003660 76003733 6.980000e-10 76.8
36 TraesCS4B01G300000 chr5D 95.385 65 3 0 5012 5076 546306714 546306778 3.200000e-18 104.0
37 TraesCS4B01G300000 chr2D 94.286 35 2 0 4310 4344 30411925 30411959 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G300000 chr4B 586464329 586470824 6495 True 11996.000000 11996 100.000000 1 6496 1 chr4B.!!$R1 6495
1 TraesCS4B01G300000 chr4B 537824658 537827564 2906 True 452.000000 736 84.316333 3027 4903 3 chr4B.!!$R2 1876
2 TraesCS4B01G300000 chr4D 468211612 468217413 5801 True 3586.000000 6185 89.829000 624 6496 2 chr4D.!!$R5 5872
3 TraesCS4B01G300000 chr4D 493013411 493013944 533 False 763.000000 763 92.449000 1 538 1 chr4D.!!$F1 537
4 TraesCS4B01G300000 chr4A 3142174 3148179 6005 False 2249.333333 4795 89.084000 618 6496 3 chr4A.!!$F1 5878
5 TraesCS4B01G300000 chr2A 4011832 4012732 900 False 881.000000 881 84.582000 3751 4667 1 chr2A.!!$F1 916
6 TraesCS4B01G300000 chr5A 11943765 11944643 878 False 811.000000 811 83.566000 3751 4667 1 chr5A.!!$F1 916
7 TraesCS4B01G300000 chr5A 626202562 626203091 529 False 749.000000 749 92.081000 1 538 1 chr5A.!!$F2 537
8 TraesCS4B01G300000 chr2B 82353036 82353574 538 False 761.000000 761 92.279000 1 538 1 chr2B.!!$F1 537
9 TraesCS4B01G300000 chr7A 563485248 563485780 532 False 750.000000 750 92.066000 1 537 1 chr7A.!!$F1 536
10 TraesCS4B01G300000 chr7A 698678160 698678662 502 True 431.000000 431 82.184000 3578 4098 1 chr7A.!!$R1 520
11 TraesCS4B01G300000 chr3D 4843393 4843927 534 False 747.000000 747 91.897000 1 537 1 chr3D.!!$F1 536
12 TraesCS4B01G300000 chr3D 578749483 578750017 534 True 730.000000 730 91.376000 1 538 1 chr3D.!!$R1 537
13 TraesCS4B01G300000 chr1B 7580925 7581460 535 False 743.000000 743 91.728000 1 538 1 chr1B.!!$F1 537
14 TraesCS4B01G300000 chr1B 594054971 594055506 535 True 737.000000 737 91.544000 1 538 1 chr1B.!!$R2 537
15 TraesCS4B01G300000 chr3A 65762475 65763009 534 False 736.000000 736 91.544000 1 538 1 chr3A.!!$F1 537
16 TraesCS4B01G300000 chr6A 591438155 591438670 515 True 422.000000 422 81.509000 3571 4098 1 chr6A.!!$R1 527
17 TraesCS4B01G300000 chr7D 93789799 93790346 547 True 420.000000 420 80.605000 3539 4098 1 chr7D.!!$R1 559
18 TraesCS4B01G300000 chr7D 606636866 606637374 508 False 420.000000 420 81.629000 3572 4098 1 chr7D.!!$F1 526
19 TraesCS4B01G300000 chr6D 443848087 443848602 515 True 405.000000 405 80.943000 3571 4098 1 chr6D.!!$R1 527
20 TraesCS4B01G300000 chr7B 690753700 690754202 502 True 403.000000 403 81.226000 3578 4098 1 chr7B.!!$R2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 627 0.037697 TTTCGGTGACACCTCCATCG 60.038 55.0 22.14 8.09 39.31 3.84 F
1773 1820 0.384669 GGAGCTTGATGCATGCCTTC 59.615 55.0 16.68 12.80 45.94 3.46 F
1910 1961 0.539438 TTGGTGACATTGTCCCTGCC 60.539 55.0 14.05 10.94 42.32 4.85 F
3102 3197 0.442699 GTTCAATCCGGTCGACAAGC 59.557 55.0 18.91 0.00 0.00 4.01 F
4118 5344 0.612453 GTGGGTCTCGAGTTCCCTCT 60.612 60.0 31.76 0.00 41.58 3.69 F
4477 5759 0.091344 CGAAATGATACCGATCGCGC 59.909 55.0 10.32 0.00 34.49 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1858 0.037326 TCTAAGAACCTGCAGCCACG 60.037 55.0 8.66 0.00 0.00 4.94 R
2655 2736 0.395586 CCATTCCGGCCATTTCCTCA 60.396 55.0 2.24 0.00 0.00 3.86 R
3490 4691 0.729690 GCGCTTCAGGATTCAGAACC 59.270 55.0 0.00 0.00 0.00 3.62 R
4190 5436 0.027979 CACACGGCATAAATCTGCGG 59.972 55.0 2.58 2.58 45.09 5.69 R
5112 6693 0.036732 ATGAACGGAGGCAGAGCAAA 59.963 50.0 0.00 0.00 0.00 3.68 R
6347 8025 0.036294 GTCTGTACCCTGCCAAGTCC 60.036 60.0 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 201 0.469331 ACGAGGAACTGAGGTGGTCA 60.469 55.000 0.00 0.00 41.55 4.02
200 202 0.679505 CGAGGAACTGAGGTGGTCAA 59.320 55.000 0.00 0.00 41.55 3.18
218 220 4.237809 CGACGATGGCGAGCTCGA 62.238 66.667 38.74 20.29 43.02 4.04
260 268 2.520069 GGGAGAGTGAGAGTGAGTGAA 58.480 52.381 0.00 0.00 0.00 3.18
263 271 2.809119 GAGAGTGAGAGTGAGTGAACGA 59.191 50.000 0.00 0.00 0.00 3.85
265 273 1.883275 AGTGAGAGTGAGTGAACGAGG 59.117 52.381 0.00 0.00 0.00 4.63
266 274 1.068194 GTGAGAGTGAGTGAACGAGGG 60.068 57.143 0.00 0.00 0.00 4.30
286 294 2.716017 GGAGACAGAGTGAGGGCGG 61.716 68.421 0.00 0.00 0.00 6.13
288 296 4.459089 GACAGAGTGAGGGCGGGC 62.459 72.222 0.00 0.00 0.00 6.13
338 350 3.697747 CCCTAACGGCCGTCACCA 61.698 66.667 34.29 16.08 0.00 4.17
339 351 2.433664 CCTAACGGCCGTCACCAC 60.434 66.667 34.29 0.00 0.00 4.16
340 352 2.340809 CTAACGGCCGTCACCACA 59.659 61.111 34.29 11.59 0.00 4.17
413 426 8.943594 TGTCATAACCCCAGTTAAAACTTAAT 57.056 30.769 0.00 0.00 41.68 1.40
545 559 5.772825 TTTTGCTATTCACTCAGTTTGCT 57.227 34.783 0.00 0.00 0.00 3.91
546 560 4.754372 TTGCTATTCACTCAGTTTGCTG 57.246 40.909 0.00 0.00 43.87 4.41
547 561 3.076621 TGCTATTCACTCAGTTTGCTGG 58.923 45.455 0.00 0.00 42.78 4.85
548 562 2.159462 GCTATTCACTCAGTTTGCTGGC 60.159 50.000 0.00 0.00 42.78 4.85
549 563 2.283145 ATTCACTCAGTTTGCTGGCT 57.717 45.000 0.00 0.00 42.78 4.75
550 564 2.928801 TTCACTCAGTTTGCTGGCTA 57.071 45.000 0.00 0.00 42.78 3.93
551 565 3.423539 TTCACTCAGTTTGCTGGCTAT 57.576 42.857 0.00 0.00 42.78 2.97
552 566 2.977914 TCACTCAGTTTGCTGGCTATC 58.022 47.619 0.00 0.00 42.78 2.08
553 567 2.012673 CACTCAGTTTGCTGGCTATCC 58.987 52.381 0.00 0.00 42.78 2.59
554 568 1.912043 ACTCAGTTTGCTGGCTATCCT 59.088 47.619 0.00 0.00 42.78 3.24
555 569 2.307098 ACTCAGTTTGCTGGCTATCCTT 59.693 45.455 0.00 0.00 42.78 3.36
556 570 2.681848 CTCAGTTTGCTGGCTATCCTTG 59.318 50.000 0.00 0.00 42.78 3.61
557 571 1.133790 CAGTTTGCTGGCTATCCTTGC 59.866 52.381 0.00 0.00 39.01 4.01
558 572 1.005215 AGTTTGCTGGCTATCCTTGCT 59.995 47.619 0.00 0.00 34.99 3.91
559 573 1.403323 GTTTGCTGGCTATCCTTGCTC 59.597 52.381 0.00 0.00 34.99 4.26
560 574 0.914644 TTGCTGGCTATCCTTGCTCT 59.085 50.000 0.00 0.00 34.99 4.09
561 575 0.179702 TGCTGGCTATCCTTGCTCTG 59.820 55.000 0.00 0.00 34.99 3.35
562 576 0.467384 GCTGGCTATCCTTGCTCTGA 59.533 55.000 0.00 0.00 32.60 3.27
563 577 1.134280 GCTGGCTATCCTTGCTCTGAA 60.134 52.381 0.00 0.00 32.60 3.02
564 578 2.559440 CTGGCTATCCTTGCTCTGAAC 58.441 52.381 0.00 0.00 0.00 3.18
565 579 1.210478 TGGCTATCCTTGCTCTGAACC 59.790 52.381 0.00 0.00 0.00 3.62
566 580 1.210478 GGCTATCCTTGCTCTGAACCA 59.790 52.381 0.00 0.00 0.00 3.67
567 581 2.284190 GCTATCCTTGCTCTGAACCAC 58.716 52.381 0.00 0.00 0.00 4.16
568 582 2.911484 CTATCCTTGCTCTGAACCACC 58.089 52.381 0.00 0.00 0.00 4.61
569 583 1.366319 ATCCTTGCTCTGAACCACCT 58.634 50.000 0.00 0.00 0.00 4.00
570 584 0.397941 TCCTTGCTCTGAACCACCTG 59.602 55.000 0.00 0.00 0.00 4.00
571 585 1.239968 CCTTGCTCTGAACCACCTGC 61.240 60.000 0.00 0.00 0.00 4.85
572 586 1.572085 CTTGCTCTGAACCACCTGCG 61.572 60.000 0.00 0.00 0.00 5.18
573 587 3.426568 GCTCTGAACCACCTGCGC 61.427 66.667 0.00 0.00 0.00 6.09
574 588 3.114616 CTCTGAACCACCTGCGCG 61.115 66.667 0.00 0.00 0.00 6.86
575 589 3.865929 CTCTGAACCACCTGCGCGT 62.866 63.158 8.43 0.00 0.00 6.01
576 590 3.414700 CTGAACCACCTGCGCGTC 61.415 66.667 8.43 0.00 0.00 5.19
582 596 3.636043 CACCTGCGCGTCGTGTTT 61.636 61.111 8.43 0.00 0.00 2.83
583 597 3.636043 ACCTGCGCGTCGTGTTTG 61.636 61.111 8.43 0.00 0.00 2.93
584 598 4.368808 CCTGCGCGTCGTGTTTGG 62.369 66.667 8.43 3.84 0.00 3.28
588 602 4.986531 CGCGTCGTGTTTGGCGTG 62.987 66.667 0.00 0.00 43.36 5.34
589 603 3.632107 GCGTCGTGTTTGGCGTGA 61.632 61.111 0.00 0.00 0.00 4.35
590 604 2.950172 GCGTCGTGTTTGGCGTGAT 61.950 57.895 0.00 0.00 0.00 3.06
591 605 1.567537 CGTCGTGTTTGGCGTGATT 59.432 52.632 0.00 0.00 0.00 2.57
592 606 0.721155 CGTCGTGTTTGGCGTGATTG 60.721 55.000 0.00 0.00 0.00 2.67
593 607 0.306533 GTCGTGTTTGGCGTGATTGT 59.693 50.000 0.00 0.00 0.00 2.71
594 608 1.018148 TCGTGTTTGGCGTGATTGTT 58.982 45.000 0.00 0.00 0.00 2.83
595 609 1.402259 TCGTGTTTGGCGTGATTGTTT 59.598 42.857 0.00 0.00 0.00 2.83
596 610 2.159366 TCGTGTTTGGCGTGATTGTTTT 60.159 40.909 0.00 0.00 0.00 2.43
597 611 2.215363 CGTGTTTGGCGTGATTGTTTTC 59.785 45.455 0.00 0.00 0.00 2.29
598 612 2.215363 GTGTTTGGCGTGATTGTTTTCG 59.785 45.455 0.00 0.00 0.00 3.46
599 613 1.784283 GTTTGGCGTGATTGTTTTCGG 59.216 47.619 0.00 0.00 0.00 4.30
600 614 1.025812 TTGGCGTGATTGTTTTCGGT 58.974 45.000 0.00 0.00 0.00 4.69
601 615 0.309302 TGGCGTGATTGTTTTCGGTG 59.691 50.000 0.00 0.00 0.00 4.94
602 616 0.589223 GGCGTGATTGTTTTCGGTGA 59.411 50.000 0.00 0.00 0.00 4.02
603 617 1.662026 GGCGTGATTGTTTTCGGTGAC 60.662 52.381 0.00 0.00 0.00 3.67
604 618 1.003331 GCGTGATTGTTTTCGGTGACA 60.003 47.619 0.00 0.00 0.00 3.58
605 619 2.635444 CGTGATTGTTTTCGGTGACAC 58.365 47.619 0.00 0.00 0.00 3.67
606 620 2.601266 CGTGATTGTTTTCGGTGACACC 60.601 50.000 15.13 15.13 34.05 4.16
607 621 2.616842 GTGATTGTTTTCGGTGACACCT 59.383 45.455 22.14 0.44 35.66 4.00
608 622 2.875933 TGATTGTTTTCGGTGACACCTC 59.124 45.455 22.14 10.66 35.66 3.85
609 623 1.670791 TTGTTTTCGGTGACACCTCC 58.329 50.000 22.14 6.07 35.66 4.30
610 624 0.542333 TGTTTTCGGTGACACCTCCA 59.458 50.000 22.14 8.44 35.66 3.86
611 625 1.142060 TGTTTTCGGTGACACCTCCAT 59.858 47.619 22.14 0.00 35.66 3.41
612 626 1.804748 GTTTTCGGTGACACCTCCATC 59.195 52.381 22.14 6.64 35.66 3.51
613 627 0.037697 TTTCGGTGACACCTCCATCG 60.038 55.000 22.14 8.09 39.31 3.84
614 628 2.501223 TTCGGTGACACCTCCATCGC 62.501 60.000 22.14 0.00 37.98 4.58
615 629 2.125106 GGTGACACCTCCATCGCC 60.125 66.667 17.84 0.00 38.28 5.54
616 630 2.125106 GTGACACCTCCATCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
617 631 2.606213 TGACACCTCCATCGCCCA 60.606 61.111 0.00 0.00 0.00 5.36
618 632 2.125106 GACACCTCCATCGCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
619 633 4.082523 ACACCTCCATCGCCCACG 62.083 66.667 0.00 0.00 42.01 4.94
622 636 4.776322 CCTCCATCGCCCACGCAA 62.776 66.667 0.00 0.00 39.84 4.85
649 663 5.767816 ATGACCAAAACAACACTTACTCC 57.232 39.130 0.00 0.00 0.00 3.85
777 793 0.972883 CAAATGGCGGGAAAAAGGGA 59.027 50.000 0.00 0.00 0.00 4.20
778 794 1.554617 CAAATGGCGGGAAAAAGGGAT 59.445 47.619 0.00 0.00 0.00 3.85
851 868 1.338011 CGGTAAACCTTCCCAACGCTA 60.338 52.381 0.00 0.00 0.00 4.26
907 924 3.846360 CGAGTCCCAAACTTCTTATCGT 58.154 45.455 0.00 0.00 38.74 3.73
939 956 1.680735 AGATCTGCTCACGACTGATCC 59.319 52.381 0.00 0.00 41.08 3.36
1008 1034 1.744798 CGGAGCTCAAGCATGGATGAA 60.745 52.381 17.19 0.00 45.16 2.57
1037 1063 1.202940 GGGAAAACCTCTGCTTGGACT 60.203 52.381 0.00 0.00 35.85 3.85
1075 1102 4.163078 CCCAAGACATTGATCTGGTAGTCT 59.837 45.833 0.00 0.00 38.83 3.24
1090 1117 6.722590 TCTGGTAGTCTGGTACATTCAGTTAA 59.277 38.462 0.00 0.00 38.20 2.01
1091 1118 7.233962 TCTGGTAGTCTGGTACATTCAGTTAAA 59.766 37.037 0.00 0.00 38.20 1.52
1130 1157 7.815840 TTAACTTCATTCTGTGGAAATGTGA 57.184 32.000 0.00 0.00 34.90 3.58
1133 1160 6.684686 ACTTCATTCTGTGGAAATGTGATTG 58.315 36.000 0.00 0.00 34.90 2.67
1160 1187 2.045926 GCGTGTCTGCAGGGGAAT 60.046 61.111 15.13 0.00 34.15 3.01
1164 1191 0.393537 GTGTCTGCAGGGGAATCTGG 60.394 60.000 15.13 0.00 35.43 3.86
1281 1308 0.931005 GGAGGAGAAGCGCGTAAATG 59.069 55.000 8.43 0.00 0.00 2.32
1287 1314 3.661025 AAGCGCGTAAATGCACCGC 62.661 57.895 8.43 10.72 44.47 5.68
1289 1316 3.496131 CGCGTAAATGCACCGCCT 61.496 61.111 13.89 0.00 44.29 5.52
1291 1318 2.106683 GCGTAAATGCACCGCCTCT 61.107 57.895 9.87 0.00 41.50 3.69
1300 1327 1.639298 GCACCGCCTCTTGCTACTTG 61.639 60.000 0.00 0.00 38.05 3.16
1304 1331 0.390340 CGCCTCTTGCTACTTGCTCA 60.390 55.000 0.00 0.00 43.37 4.26
1315 1342 4.640201 TGCTACTTGCTCACTGTTTTTCTT 59.360 37.500 0.00 0.00 43.37 2.52
1316 1343 5.208503 GCTACTTGCTCACTGTTTTTCTTC 58.791 41.667 0.00 0.00 38.95 2.87
1317 1344 4.639135 ACTTGCTCACTGTTTTTCTTCC 57.361 40.909 0.00 0.00 0.00 3.46
1318 1345 4.273318 ACTTGCTCACTGTTTTTCTTCCT 58.727 39.130 0.00 0.00 0.00 3.36
1319 1346 4.096984 ACTTGCTCACTGTTTTTCTTCCTG 59.903 41.667 0.00 0.00 0.00 3.86
1320 1347 2.951642 TGCTCACTGTTTTTCTTCCTGG 59.048 45.455 0.00 0.00 0.00 4.45
1321 1348 2.294512 GCTCACTGTTTTTCTTCCTGGG 59.705 50.000 0.00 0.00 0.00 4.45
1328 1355 5.899547 ACTGTTTTTCTTCCTGGGAGATTTT 59.100 36.000 5.29 0.00 0.00 1.82
1331 1358 6.836527 TGTTTTTCTTCCTGGGAGATTTTACA 59.163 34.615 5.29 5.70 0.00 2.41
1334 1361 5.373812 TCTTCCTGGGAGATTTTACATCC 57.626 43.478 0.00 0.00 0.00 3.51
1340 1367 5.454471 CCTGGGAGATTTTACATCCTCTGAG 60.454 48.000 0.00 0.00 33.40 3.35
1375 1402 0.687354 TCTGGCAGGAGAACAAGGTC 59.313 55.000 15.73 0.00 0.00 3.85
1429 1456 4.100084 TGGGTGATGGAGGCAGCG 62.100 66.667 0.00 0.00 34.74 5.18
1477 1504 1.523758 GGGGTGTAAGTCAAGCACTG 58.476 55.000 0.00 0.00 34.56 3.66
1497 1524 3.534554 TGTGCTATGCTATGTTCTGTGG 58.465 45.455 0.00 0.00 0.00 4.17
1501 1528 0.464373 ATGCTATGTTCTGTGGCCGG 60.464 55.000 0.00 0.00 0.00 6.13
1516 1543 1.001706 GGCCGGTTCAGTCAAGAAAAC 60.002 52.381 1.90 0.00 0.00 2.43
1529 1556 4.096382 GTCAAGAAAACCTCTGCAGTTTCA 59.904 41.667 22.35 6.26 36.44 2.69
1530 1557 4.336433 TCAAGAAAACCTCTGCAGTTTCAG 59.664 41.667 22.35 16.33 36.44 3.02
1586 1615 9.219603 CAACAGAGAAGTGGTAGATTAATTTGA 57.780 33.333 0.00 0.00 0.00 2.69
1635 1664 3.383162 TCCTGACTGGGAGGACTTC 57.617 57.895 0.00 0.00 34.49 3.01
1773 1820 0.384669 GGAGCTTGATGCATGCCTTC 59.615 55.000 16.68 12.80 45.94 3.46
1806 1857 0.967662 TTGGTGTGTTCATGCATGGG 59.032 50.000 25.97 1.85 0.00 4.00
1807 1858 1.216178 GGTGTGTTCATGCATGGGC 59.784 57.895 25.97 18.34 41.68 5.36
1860 1911 1.118838 AGAGCTGGATGCCTCTGTAC 58.881 55.000 0.00 0.00 44.23 2.90
1868 1919 1.067212 GATGCCTCTGTACTGGTACCG 59.933 57.143 7.57 4.79 35.26 4.02
1910 1961 0.539438 TTGGTGACATTGTCCCTGCC 60.539 55.000 14.05 10.94 42.32 4.85
1960 2011 7.562454 TCCTCTCAAAATTGATCAGGCAATTAT 59.438 33.333 13.07 0.00 45.09 1.28
1983 2036 9.964303 TTATTTACTGCATATGCCATTTACAAG 57.036 29.630 24.54 14.45 41.18 3.16
1992 2045 9.918630 GCATATGCCATTTACAAGAAAGATATT 57.081 29.630 17.26 0.00 34.31 1.28
2017 2092 6.652900 TGGATTATTCTGTCAAAACGATGTGA 59.347 34.615 0.00 0.00 0.00 3.58
2022 2097 3.069586 TCTGTCAAAACGATGTGACCTCT 59.930 43.478 12.91 0.00 42.89 3.69
2027 2102 5.007724 GTCAAAACGATGTGACCTCTTTCTT 59.992 40.000 4.69 0.00 38.57 2.52
2029 2104 5.674933 AAACGATGTGACCTCTTTCTTTC 57.325 39.130 0.00 0.00 0.00 2.62
2031 2106 4.962155 ACGATGTGACCTCTTTCTTTCTT 58.038 39.130 0.00 0.00 0.00 2.52
2032 2107 6.097915 ACGATGTGACCTCTTTCTTTCTTA 57.902 37.500 0.00 0.00 0.00 2.10
2034 2109 7.162082 ACGATGTGACCTCTTTCTTTCTTATT 58.838 34.615 0.00 0.00 0.00 1.40
2077 2152 4.416516 TCACTGGAGAATCACTTCCTGTA 58.583 43.478 3.26 0.00 36.25 2.74
2080 2155 4.841246 ACTGGAGAATCACTTCCTGTAACT 59.159 41.667 1.82 0.00 36.25 2.24
2092 2167 3.242011 TCCTGTAACTAAAAGGACCGGT 58.758 45.455 6.92 6.92 35.14 5.28
2152 2227 1.014044 TTGAAGCTGTCGTCATCGCC 61.014 55.000 0.00 0.00 36.96 5.54
2185 2260 3.699134 ATTCTTCGGGAAGGCGGCC 62.699 63.158 12.11 12.11 38.88 6.13
2264 2339 5.353400 CACTGCAGAATGTGATTAGATGTGT 59.647 40.000 23.35 0.00 39.31 3.72
2299 2374 2.309528 GACAAGTGTCTGTGGTGTGA 57.690 50.000 4.15 0.00 41.65 3.58
2395 2470 2.470821 GGGTGATCGTTGAGGTTATCG 58.529 52.381 0.00 0.00 0.00 2.92
2404 2479 3.924073 CGTTGAGGTTATCGTCATGTTCA 59.076 43.478 0.00 0.00 38.09 3.18
2554 2629 1.134401 AGGTGTGTCTGGATATTGCCG 60.134 52.381 0.00 0.00 0.00 5.69
2581 2656 7.810759 TCACCTTTCTTCAGTTAACAAACAAAC 59.189 33.333 8.61 0.00 0.00 2.93
2585 2660 8.973835 TTTCTTCAGTTAACAAACAAACGATT 57.026 26.923 8.61 0.00 0.00 3.34
2649 2730 2.228582 TGCCATCACCAAAAGAATGACG 59.771 45.455 0.00 0.00 0.00 4.35
2727 2808 3.576982 TCACTCTCAACCATCTTACCGTT 59.423 43.478 0.00 0.00 0.00 4.44
2734 2815 4.513692 TCAACCATCTTACCGTTGACAAAG 59.486 41.667 0.00 0.00 40.59 2.77
2886 2972 3.648067 GAGGAATGGACAGGGACATGATA 59.352 47.826 0.00 0.00 0.00 2.15
2889 2975 5.006386 GGAATGGACAGGGACATGATAATC 58.994 45.833 0.00 0.00 0.00 1.75
2922 3008 4.034975 GCAAGAGCATCAAGAGTGGATAAC 59.965 45.833 0.00 0.00 41.58 1.89
3000 3086 2.485426 TGAATCTCTTCGCTTGCTTTGG 59.515 45.455 0.00 0.00 33.86 3.28
3020 3106 2.965147 GGGCCTGCACATTAATAATGGT 59.035 45.455 16.36 1.02 43.21 3.55
3025 3111 5.591099 CCTGCACATTAATAATGGTTCACC 58.409 41.667 16.36 0.00 43.21 4.02
3102 3197 0.442699 GTTCAATCCGGTCGACAAGC 59.557 55.000 18.91 0.00 0.00 4.01
3188 3283 2.961977 GCAGGTTCTCCCTCTCCCTTAT 60.962 54.545 0.00 0.00 43.86 1.73
3189 3284 2.969262 CAGGTTCTCCCTCTCCCTTATC 59.031 54.545 0.00 0.00 43.86 1.75
3207 3302 5.006165 CCTTATCGAAGAAGTTCATCACTGC 59.994 44.000 5.50 0.00 43.58 4.40
3210 3305 4.318332 TCGAAGAAGTTCATCACTGCATT 58.682 39.130 5.50 0.00 35.12 3.56
3223 3318 2.786777 ACTGCATTTCATCAGTGCTGA 58.213 42.857 4.23 4.23 41.53 4.26
3251 3346 4.696877 TGTCATCTAACAGCATGGAACTTG 59.303 41.667 0.00 0.00 43.62 3.16
3310 3450 9.863650 ATCTGATCTGATTTTGGTCATCTTATT 57.136 29.630 9.15 0.00 0.00 1.40
3438 4584 6.106648 ACCAGGTAAAACTCCTAGTAACAC 57.893 41.667 0.00 0.00 33.54 3.32
3464 4610 8.655092 CACATTCTGAATTCTGAAGACTAGTTC 58.345 37.037 25.68 0.00 37.26 3.01
3465 4611 8.370940 ACATTCTGAATTCTGAAGACTAGTTCA 58.629 33.333 25.68 0.00 37.26 3.18
3490 4691 2.079158 CTGGTGAATGTACACTGCTGG 58.921 52.381 0.00 0.00 40.22 4.85
3491 4692 1.271325 TGGTGAATGTACACTGCTGGG 60.271 52.381 0.00 0.00 40.22 4.45
3500 4701 2.191128 ACACTGCTGGGTTCTGAATC 57.809 50.000 0.00 0.00 0.00 2.52
4102 5328 1.732259 GCATGAAGAACTACACGGTGG 59.268 52.381 13.48 0.00 0.00 4.61
4107 5333 1.254954 AGAACTACACGGTGGGTCTC 58.745 55.000 13.48 10.37 36.34 3.36
4113 5339 1.080705 CACGGTGGGTCTCGAGTTC 60.081 63.158 13.13 7.05 0.00 3.01
4116 5342 1.609794 GGTGGGTCTCGAGTTCCCT 60.610 63.158 31.76 0.00 41.58 4.20
4117 5343 1.605971 GGTGGGTCTCGAGTTCCCTC 61.606 65.000 31.76 29.04 41.58 4.30
4118 5344 0.612453 GTGGGTCTCGAGTTCCCTCT 60.612 60.000 31.76 0.00 41.58 3.69
4121 5347 1.391577 GGTCTCGAGTTCCCTCTACC 58.608 60.000 13.13 6.11 35.43 3.18
4122 5348 1.340795 GGTCTCGAGTTCCCTCTACCA 60.341 57.143 13.13 0.00 34.90 3.25
4123 5349 1.744522 GTCTCGAGTTCCCTCTACCAC 59.255 57.143 13.13 0.00 35.43 4.16
4124 5350 1.634459 TCTCGAGTTCCCTCTACCACT 59.366 52.381 13.13 0.00 35.43 4.00
4125 5351 2.842496 TCTCGAGTTCCCTCTACCACTA 59.158 50.000 13.13 0.00 35.43 2.74
4126 5352 2.944349 CTCGAGTTCCCTCTACCACTAC 59.056 54.545 3.62 0.00 35.43 2.73
4127 5353 2.575279 TCGAGTTCCCTCTACCACTACT 59.425 50.000 0.00 0.00 35.43 2.57
4130 5356 2.043252 AGTTCCCTCTACCACTACTGCT 59.957 50.000 0.00 0.00 0.00 4.24
4132 5358 3.294038 TCCCTCTACCACTACTGCTAC 57.706 52.381 0.00 0.00 0.00 3.58
4133 5359 2.579400 TCCCTCTACCACTACTGCTACA 59.421 50.000 0.00 0.00 0.00 2.74
4134 5360 2.688958 CCCTCTACCACTACTGCTACAC 59.311 54.545 0.00 0.00 0.00 2.90
4135 5361 3.622630 CCTCTACCACTACTGCTACACT 58.377 50.000 0.00 0.00 0.00 3.55
4136 5362 3.378742 CCTCTACCACTACTGCTACACTG 59.621 52.174 0.00 0.00 0.00 3.66
4138 5364 4.856509 TCTACCACTACTGCTACACTGAT 58.143 43.478 0.00 0.00 0.00 2.90
4139 5365 3.876274 ACCACTACTGCTACACTGATG 57.124 47.619 0.00 0.00 0.00 3.07
4141 5367 3.832490 ACCACTACTGCTACACTGATGAA 59.168 43.478 0.00 0.00 0.00 2.57
4143 5369 3.854240 CACTACTGCTACACTGATGAACG 59.146 47.826 0.00 0.00 0.00 3.95
4147 5373 1.798223 TGCTACACTGATGAACGCAAC 59.202 47.619 0.00 0.00 0.00 4.17
4149 5375 2.092838 GCTACACTGATGAACGCAACTC 59.907 50.000 0.00 0.00 0.00 3.01
4151 5377 2.138320 ACACTGATGAACGCAACTCTG 58.862 47.619 0.00 0.00 0.00 3.35
4152 5378 2.138320 CACTGATGAACGCAACTCTGT 58.862 47.619 0.00 0.00 0.00 3.41
4153 5379 2.545526 CACTGATGAACGCAACTCTGTT 59.454 45.455 0.00 0.00 0.00 3.16
4154 5380 3.002656 CACTGATGAACGCAACTCTGTTT 59.997 43.478 0.00 0.00 0.00 2.83
4155 5381 3.248602 ACTGATGAACGCAACTCTGTTTC 59.751 43.478 0.00 0.00 0.00 2.78
4157 5383 3.248363 TGATGAACGCAACTCTGTTTCTG 59.752 43.478 0.00 0.00 0.00 3.02
4159 5385 2.607635 TGAACGCAACTCTGTTTCTGAC 59.392 45.455 0.00 0.00 0.00 3.51
4160 5386 1.583054 ACGCAACTCTGTTTCTGACC 58.417 50.000 0.00 0.00 0.00 4.02
4161 5387 0.868406 CGCAACTCTGTTTCTGACCC 59.132 55.000 0.00 0.00 0.00 4.46
4163 5389 1.876156 GCAACTCTGTTTCTGACCCAG 59.124 52.381 0.00 0.00 0.00 4.45
4164 5390 2.485479 GCAACTCTGTTTCTGACCCAGA 60.485 50.000 5.61 5.61 38.87 3.86
4183 5429 3.436243 AGAAGATCTGACGGTTTCTCCT 58.564 45.455 0.00 0.00 0.00 3.69
4184 5430 3.194542 AGAAGATCTGACGGTTTCTCCTG 59.805 47.826 0.00 0.00 0.00 3.86
4186 5432 1.205893 GATCTGACGGTTTCTCCTGCT 59.794 52.381 0.00 0.00 0.00 4.24
4188 5434 1.151668 CTGACGGTTTCTCCTGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
4190 5436 1.578206 GACGGTTTCTCCTGCTTGGC 61.578 60.000 0.00 0.00 35.26 4.52
4191 5437 2.335712 CGGTTTCTCCTGCTTGGCC 61.336 63.158 0.00 0.00 35.26 5.36
4225 5471 3.592381 GTGTGCATCACCATACGAATC 57.408 47.619 7.86 0.00 40.84 2.52
4302 5580 3.988976 TTCCAGTGATCTTCCTTCCTG 57.011 47.619 0.00 0.00 0.00 3.86
4304 5582 4.061131 TCCAGTGATCTTCCTTCCTGTA 57.939 45.455 0.00 0.00 0.00 2.74
4308 5586 5.104776 CCAGTGATCTTCCTTCCTGTATGAA 60.105 44.000 0.00 0.00 0.00 2.57
4309 5587 5.814705 CAGTGATCTTCCTTCCTGTATGAAC 59.185 44.000 0.00 0.00 0.00 3.18
4310 5588 5.723887 AGTGATCTTCCTTCCTGTATGAACT 59.276 40.000 0.00 0.00 0.00 3.01
4314 5592 5.551233 TCTTCCTTCCTGTATGAACTTGTG 58.449 41.667 0.00 0.00 0.00 3.33
4412 5690 3.176708 CCATACTCAACGACGGTAACTG 58.823 50.000 0.00 0.00 0.00 3.16
4417 5698 1.065401 TCAACGACGGTAACTGACGTT 59.935 47.619 9.96 9.96 45.33 3.99
4448 5730 6.826231 TCTGAACTTACCATGTGAAGTTTCAA 59.174 34.615 18.25 10.03 44.04 2.69
4449 5731 6.791303 TGAACTTACCATGTGAAGTTTCAAC 58.209 36.000 18.25 9.76 44.04 3.18
4451 5733 5.197451 ACTTACCATGTGAAGTTTCAACCA 58.803 37.500 4.13 0.00 39.21 3.67
4452 5734 5.833131 ACTTACCATGTGAAGTTTCAACCAT 59.167 36.000 4.13 0.00 39.21 3.55
4453 5735 7.001674 ACTTACCATGTGAAGTTTCAACCATA 58.998 34.615 4.13 0.00 39.21 2.74
4454 5736 5.705609 ACCATGTGAAGTTTCAACCATAC 57.294 39.130 0.00 0.00 39.21 2.39
4456 5738 4.379394 CCATGTGAAGTTTCAACCATACCG 60.379 45.833 0.00 0.00 39.21 4.02
4458 5740 3.810941 TGTGAAGTTTCAACCATACCGTC 59.189 43.478 0.00 0.00 39.21 4.79
4460 5742 3.243805 TGAAGTTTCAACCATACCGTCGA 60.244 43.478 0.00 0.00 33.55 4.20
4461 5743 3.389925 AGTTTCAACCATACCGTCGAA 57.610 42.857 0.00 0.00 0.00 3.71
4462 5744 3.731089 AGTTTCAACCATACCGTCGAAA 58.269 40.909 0.00 0.00 0.00 3.46
4465 5747 3.596310 TCAACCATACCGTCGAAATGA 57.404 42.857 7.97 0.00 0.00 2.57
4467 5749 5.265350 TCAACCATACCGTCGAAATGATA 57.735 39.130 7.97 0.00 0.00 2.15
4468 5750 5.045215 TCAACCATACCGTCGAAATGATAC 58.955 41.667 7.97 0.00 0.00 2.24
4469 5751 3.986277 ACCATACCGTCGAAATGATACC 58.014 45.455 7.97 0.00 0.00 2.73
4470 5752 2.984471 CCATACCGTCGAAATGATACCG 59.016 50.000 7.97 0.00 0.00 4.02
4471 5753 3.304861 CCATACCGTCGAAATGATACCGA 60.305 47.826 7.97 0.00 0.00 4.69
4472 5754 4.482386 CATACCGTCGAAATGATACCGAT 58.518 43.478 0.00 0.00 34.71 4.18
4473 5755 3.009301 ACCGTCGAAATGATACCGATC 57.991 47.619 0.00 0.00 34.71 3.69
4476 5758 1.382419 GTCGAAATGATACCGATCGCG 59.618 52.381 10.32 0.00 34.49 5.87
4477 5759 0.091344 CGAAATGATACCGATCGCGC 59.909 55.000 10.32 0.00 34.49 6.86
4478 5760 0.438830 GAAATGATACCGATCGCGCC 59.561 55.000 10.32 0.00 34.49 6.53
4609 6168 4.874977 GGCACCTACCTCGCGCTC 62.875 72.222 5.56 0.00 0.00 5.03
4659 6221 1.734465 CAGAACCACATTCTTCGAGGC 59.266 52.381 0.00 0.00 46.05 4.70
4683 6245 2.233271 CACAGCAGAAACCCAACATCT 58.767 47.619 0.00 0.00 0.00 2.90
4685 6247 3.189287 CACAGCAGAAACCCAACATCTAC 59.811 47.826 0.00 0.00 0.00 2.59
4686 6248 3.073062 ACAGCAGAAACCCAACATCTACT 59.927 43.478 0.00 0.00 0.00 2.57
4688 6250 2.749621 GCAGAAACCCAACATCTACTGG 59.250 50.000 0.00 0.00 0.00 4.00
4689 6251 3.559171 GCAGAAACCCAACATCTACTGGA 60.559 47.826 0.00 0.00 34.35 3.86
4732 6300 4.240888 TCTGACGCTTTCTGATTTCTGAG 58.759 43.478 0.00 0.00 0.00 3.35
5032 6610 2.124236 CTACCTCCCGCTCGACCT 60.124 66.667 0.00 0.00 0.00 3.85
5134 6715 1.817099 CTCTGCCTCCGTTCATGCC 60.817 63.158 0.00 0.00 0.00 4.40
5145 6729 0.242017 GTTCATGCCTTGCACCTGTC 59.758 55.000 0.00 0.00 43.04 3.51
5205 6789 1.153005 ACTACTACGGCGAGGAGGG 60.153 63.158 16.62 7.73 34.15 4.30
5206 6790 2.517875 TACTACGGCGAGGAGGGC 60.518 66.667 16.62 0.00 34.15 5.19
5346 6948 0.908910 TCCGGTGGATAGTGCAATGT 59.091 50.000 0.00 0.00 0.00 2.71
5355 6957 4.635765 TGGATAGTGCAATGTTACTGAAGC 59.364 41.667 0.00 0.00 0.00 3.86
5359 6961 2.813754 GTGCAATGTTACTGAAGCCTCA 59.186 45.455 0.00 0.00 0.00 3.86
5365 6967 3.861840 TGTTACTGAAGCCTCATAGCAC 58.138 45.455 0.00 0.00 34.23 4.40
5392 6994 7.982224 GGTTACTGAAGAAATGTATGGTAACC 58.018 38.462 13.41 13.41 45.34 2.85
5393 6995 7.827729 GGTTACTGAAGAAATGTATGGTAACCT 59.172 37.037 18.50 0.00 46.64 3.50
5395 6997 9.802039 TTACTGAAGAAATGTATGGTAACCTTT 57.198 29.630 0.00 0.00 0.00 3.11
5408 7017 4.583073 TGGTAACCTTTCTTTTGCTTCCTC 59.417 41.667 0.00 0.00 0.00 3.71
5409 7018 3.990318 AACCTTTCTTTTGCTTCCTCG 57.010 42.857 0.00 0.00 0.00 4.63
5505 7114 2.350804 CACTCCGTTTGATGATCTGCTG 59.649 50.000 0.00 0.00 0.00 4.41
5506 7115 1.329906 CTCCGTTTGATGATCTGCTGC 59.670 52.381 0.00 0.00 0.00 5.25
5507 7116 1.065926 TCCGTTTGATGATCTGCTGCT 60.066 47.619 0.00 0.00 0.00 4.24
5508 7117 1.741706 CCGTTTGATGATCTGCTGCTT 59.258 47.619 0.00 0.00 0.00 3.91
5509 7118 2.223203 CCGTTTGATGATCTGCTGCTTC 60.223 50.000 0.00 0.00 0.00 3.86
5510 7119 2.417586 CGTTTGATGATCTGCTGCTTCA 59.582 45.455 0.00 2.11 0.00 3.02
5516 7125 0.107800 GATCTGCTGCTTCAGGCTGA 60.108 55.000 14.43 14.43 41.52 4.26
5518 7127 1.190178 TCTGCTGCTTCAGGCTGAGA 61.190 55.000 17.91 6.78 41.52 3.27
5519 7128 0.741574 CTGCTGCTTCAGGCTGAGAG 60.742 60.000 17.91 17.43 41.52 3.20
5520 7129 1.449956 GCTGCTTCAGGCTGAGAGG 60.450 63.158 17.91 12.65 41.52 3.69
5522 7131 0.612229 CTGCTTCAGGCTGAGAGGAA 59.388 55.000 17.91 6.06 41.52 3.36
5523 7132 1.002888 CTGCTTCAGGCTGAGAGGAAA 59.997 52.381 17.91 0.32 41.52 3.13
5524 7133 1.002888 TGCTTCAGGCTGAGAGGAAAG 59.997 52.381 17.91 11.96 42.39 2.62
5525 7134 1.277557 GCTTCAGGCTGAGAGGAAAGA 59.722 52.381 17.91 0.00 38.06 2.52
5527 7136 0.901124 TCAGGCTGAGAGGAAAGAGC 59.099 55.000 14.43 0.00 0.00 4.09
5528 7137 0.903942 CAGGCTGAGAGGAAAGAGCT 59.096 55.000 9.42 0.00 0.00 4.09
5530 7139 2.499289 CAGGCTGAGAGGAAAGAGCTAA 59.501 50.000 9.42 0.00 0.00 3.09
5531 7140 3.134442 CAGGCTGAGAGGAAAGAGCTAAT 59.866 47.826 9.42 0.00 0.00 1.73
5532 7141 3.134442 AGGCTGAGAGGAAAGAGCTAATG 59.866 47.826 0.00 0.00 0.00 1.90
5533 7142 3.118445 GGCTGAGAGGAAAGAGCTAATGT 60.118 47.826 0.00 0.00 0.00 2.71
5534 7143 3.870419 GCTGAGAGGAAAGAGCTAATGTG 59.130 47.826 0.00 0.00 0.00 3.21
5535 7144 4.622695 GCTGAGAGGAAAGAGCTAATGTGT 60.623 45.833 0.00 0.00 0.00 3.72
5536 7145 5.486526 CTGAGAGGAAAGAGCTAATGTGTT 58.513 41.667 0.00 0.00 0.00 3.32
5540 7149 4.144297 AGGAAAGAGCTAATGTGTTGCAA 58.856 39.130 0.00 0.00 0.00 4.08
5542 7151 4.022849 GGAAAGAGCTAATGTGTTGCAACT 60.023 41.667 28.61 12.34 0.00 3.16
5543 7152 5.181245 GGAAAGAGCTAATGTGTTGCAACTA 59.819 40.000 28.61 18.43 0.00 2.24
5544 7153 5.613358 AAGAGCTAATGTGTTGCAACTAC 57.387 39.130 28.61 23.17 0.00 2.73
5545 7154 4.899502 AGAGCTAATGTGTTGCAACTACT 58.100 39.130 28.61 15.05 0.00 2.57
5549 7158 5.530915 AGCTAATGTGTTGCAACTACTGAAA 59.469 36.000 28.61 5.16 0.00 2.69
5566 7175 5.295152 ACTGAAACTTTGTTACTACTCCGG 58.705 41.667 0.00 0.00 0.00 5.14
5573 7182 4.395959 TTGTTACTACTCCGGCTAATGG 57.604 45.455 0.00 0.00 0.00 3.16
5586 7197 2.353704 GGCTAATGGTTTTGGCCTGAAC 60.354 50.000 3.32 8.81 39.68 3.18
5602 7217 5.701290 GGCCTGAACACATACATATTCCTAC 59.299 44.000 0.00 0.00 0.00 3.18
5611 7226 8.978472 ACACATACATATTCCTACTAGTGTGTT 58.022 33.333 5.39 0.00 42.40 3.32
5654 7270 1.133598 TGCATCATTAGCTTGCTGCAC 59.866 47.619 11.81 0.00 42.10 4.57
5664 7280 1.541147 GCTTGCTGCACAGATTTGGTA 59.459 47.619 0.00 0.00 42.31 3.25
5709 7325 7.991084 ATGACATGACTAATACCCAATGATG 57.009 36.000 0.00 0.00 0.00 3.07
5710 7326 7.135591 TGACATGACTAATACCCAATGATGA 57.864 36.000 0.00 0.00 0.00 2.92
5711 7327 7.748677 TGACATGACTAATACCCAATGATGAT 58.251 34.615 0.00 0.00 0.00 2.45
5712 7328 7.879677 TGACATGACTAATACCCAATGATGATC 59.120 37.037 0.00 0.00 0.00 2.92
5713 7329 7.982252 ACATGACTAATACCCAATGATGATCT 58.018 34.615 0.00 0.00 0.00 2.75
5714 7330 7.881751 ACATGACTAATACCCAATGATGATCTG 59.118 37.037 0.00 0.00 0.00 2.90
5715 7331 7.616528 TGACTAATACCCAATGATGATCTGA 57.383 36.000 0.00 0.00 0.00 3.27
5716 7332 8.211030 TGACTAATACCCAATGATGATCTGAT 57.789 34.615 0.00 0.00 0.00 2.90
5717 7333 8.098912 TGACTAATACCCAATGATGATCTGATG 58.901 37.037 0.00 0.00 0.00 3.07
5718 7334 6.883217 ACTAATACCCAATGATGATCTGATGC 59.117 38.462 0.00 0.00 0.00 3.91
5719 7335 3.878237 ACCCAATGATGATCTGATGCT 57.122 42.857 0.00 0.00 0.00 3.79
5720 7336 4.987963 ACCCAATGATGATCTGATGCTA 57.012 40.909 0.00 0.00 0.00 3.49
5724 7340 5.181433 CCCAATGATGATCTGATGCTACTTG 59.819 44.000 0.00 0.00 0.00 3.16
5734 7350 3.854666 TGATGCTACTTGTTCTCAGCTC 58.145 45.455 0.00 0.00 35.05 4.09
5744 7360 2.008329 GTTCTCAGCTCATTCAGGCAG 58.992 52.381 0.00 0.00 0.00 4.85
5745 7361 0.107800 TCTCAGCTCATTCAGGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
5746 7362 1.429927 CTCAGCTCATTCAGGCAGCG 61.430 60.000 0.00 0.00 38.26 5.18
5748 7364 2.823147 GCTCATTCAGGCAGCGCT 60.823 61.111 2.64 2.64 0.00 5.92
5749 7365 3.099438 CTCATTCAGGCAGCGCTG 58.901 61.111 32.83 32.83 0.00 5.18
5750 7366 1.449070 CTCATTCAGGCAGCGCTGA 60.449 57.895 40.21 20.07 0.00 4.26
5751 7367 1.703438 CTCATTCAGGCAGCGCTGAC 61.703 60.000 40.21 38.34 39.43 3.51
5752 7368 2.036571 CATTCAGGCAGCGCTGACA 61.037 57.895 42.41 24.99 42.32 3.58
5753 7369 2.037136 ATTCAGGCAGCGCTGACAC 61.037 57.895 42.41 28.35 42.32 3.67
5754 7370 2.460662 ATTCAGGCAGCGCTGACACT 62.461 55.000 42.41 29.97 42.32 3.55
5755 7371 3.420606 CAGGCAGCGCTGACACTG 61.421 66.667 42.41 34.79 42.32 3.66
5756 7372 3.619767 AGGCAGCGCTGACACTGA 61.620 61.111 42.41 0.00 42.32 3.41
5777 7393 5.668471 TGATGATGACAGTGATTTCTCTCC 58.332 41.667 0.00 0.00 0.00 3.71
5798 7436 5.147032 TCCTGAAAATCACCAAACCTGATT 58.853 37.500 0.00 0.00 39.56 2.57
5826 7467 9.404848 CATGGATATGTTTATATGGAGCATCTT 57.595 33.333 0.00 0.00 29.55 2.40
5842 7500 7.014711 TGGAGCATCTTGTAGATAAGTCCTAAG 59.985 40.741 0.00 0.00 32.12 2.18
6040 7710 0.174389 CTCGGATGCGATATCAGGGG 59.826 60.000 10.57 0.00 0.00 4.79
6041 7711 1.219124 CGGATGCGATATCAGGGGG 59.781 63.158 0.00 0.00 0.00 5.40
6042 7712 1.544825 CGGATGCGATATCAGGGGGT 61.545 60.000 0.00 0.00 0.00 4.95
6153 7827 2.036256 ATGTTGGCCCTCTGCACC 59.964 61.111 0.00 0.00 43.89 5.01
6162 7836 4.007644 CTCTGCACCAGCCGGACA 62.008 66.667 5.05 0.00 41.13 4.02
6164 7838 3.052082 CTGCACCAGCCGGACAAG 61.052 66.667 5.05 0.00 41.13 3.16
6186 7860 0.037303 CCTGCACCACCTCAGACATT 59.963 55.000 0.00 0.00 32.26 2.71
6220 7895 3.132863 GGCTCAGCCTGCAAAAATG 57.867 52.632 9.09 0.00 46.69 2.32
6246 7921 0.538118 AGGCTCGGGCGTTATTTACA 59.462 50.000 0.00 0.00 39.81 2.41
6250 7925 3.125316 GCTCGGGCGTTATTTACATACA 58.875 45.455 0.00 0.00 0.00 2.29
6252 7927 4.114073 CTCGGGCGTTATTTACATACACA 58.886 43.478 0.00 0.00 0.00 3.72
6260 7935 6.356977 GCGTTATTTACATACACATGCATGTC 59.643 38.462 29.23 12.16 39.39 3.06
6273 7949 1.338579 TGCATGTCTGGCGTTGTATGA 60.339 47.619 0.00 0.00 0.00 2.15
6282 7958 4.277174 TCTGGCGTTGTATGACAAATTTGT 59.723 37.500 23.49 23.49 40.15 2.83
6283 7959 4.294232 TGGCGTTGTATGACAAATTTGTG 58.706 39.130 27.85 11.93 40.15 3.33
6347 8025 3.833645 TCGGCGAATCGGGACAGG 61.834 66.667 7.35 0.00 0.00 4.00
6365 8043 1.198759 GGGACTTGGCAGGGTACAGA 61.199 60.000 0.44 0.00 0.00 3.41
6468 8146 1.153269 GACCTAGGCTTGGAGCTGC 60.153 63.158 21.96 0.00 41.99 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 201 2.202623 GAGCTCGCCATCGTCGTT 60.203 61.111 0.00 0.00 36.96 3.85
200 202 4.538283 CGAGCTCGCCATCGTCGT 62.538 66.667 25.07 0.00 36.96 4.34
218 220 1.831652 CTCGCTCTGTTTCCCCTGGT 61.832 60.000 0.00 0.00 0.00 4.00
265 273 1.687493 CCCTCACTCTGTCTCCCCC 60.687 68.421 0.00 0.00 0.00 5.40
266 274 2.363172 GCCCTCACTCTGTCTCCCC 61.363 68.421 0.00 0.00 0.00 4.81
286 294 0.835276 AGGTAAATACTGGTCCGGCC 59.165 55.000 0.00 1.41 37.90 6.13
338 350 3.224324 ACAGGGCTCACGACGTGT 61.224 61.111 26.01 5.03 42.17 4.49
339 351 2.734723 CACAGGGCTCACGACGTG 60.735 66.667 21.88 21.88 39.89 4.49
340 352 3.991051 CCACAGGGCTCACGACGT 61.991 66.667 0.00 0.00 0.00 4.34
351 364 2.561037 GGGTTTTGTCGGCCACAGG 61.561 63.158 2.24 0.00 35.97 4.00
413 426 1.096416 AAAAACAAGTGGCCGAACGA 58.904 45.000 0.00 0.00 0.00 3.85
504 518 2.118313 AAACTACCACATTACGGGCC 57.882 50.000 0.00 0.00 0.00 5.80
538 552 1.005215 AGCAAGGATAGCCAGCAAACT 59.995 47.619 15.49 0.00 39.20 2.66
539 553 1.403323 GAGCAAGGATAGCCAGCAAAC 59.597 52.381 15.49 4.51 39.20 2.93
540 554 1.283029 AGAGCAAGGATAGCCAGCAAA 59.717 47.619 15.49 0.00 39.20 3.68
541 555 0.914644 AGAGCAAGGATAGCCAGCAA 59.085 50.000 15.49 0.00 39.20 3.91
542 556 0.179702 CAGAGCAAGGATAGCCAGCA 59.820 55.000 15.49 0.00 39.20 4.41
543 557 0.467384 TCAGAGCAAGGATAGCCAGC 59.533 55.000 0.00 2.60 37.63 4.85
544 558 2.559440 GTTCAGAGCAAGGATAGCCAG 58.441 52.381 0.00 0.00 36.29 4.85
545 559 1.210478 GGTTCAGAGCAAGGATAGCCA 59.790 52.381 0.00 0.00 36.29 4.75
546 560 1.210478 TGGTTCAGAGCAAGGATAGCC 59.790 52.381 0.00 0.00 0.00 3.93
547 561 2.284190 GTGGTTCAGAGCAAGGATAGC 58.716 52.381 0.00 0.00 34.60 2.97
548 562 2.503356 AGGTGGTTCAGAGCAAGGATAG 59.497 50.000 0.00 0.00 34.60 2.08
549 563 2.237143 CAGGTGGTTCAGAGCAAGGATA 59.763 50.000 0.00 0.00 34.60 2.59
550 564 1.004044 CAGGTGGTTCAGAGCAAGGAT 59.996 52.381 0.00 0.00 34.60 3.24
551 565 0.397941 CAGGTGGTTCAGAGCAAGGA 59.602 55.000 0.00 0.00 34.60 3.36
552 566 1.239968 GCAGGTGGTTCAGAGCAAGG 61.240 60.000 0.00 0.00 34.60 3.61
553 567 1.572085 CGCAGGTGGTTCAGAGCAAG 61.572 60.000 0.00 0.00 34.60 4.01
554 568 1.597854 CGCAGGTGGTTCAGAGCAA 60.598 57.895 0.00 0.00 34.60 3.91
555 569 2.031012 CGCAGGTGGTTCAGAGCA 59.969 61.111 0.00 0.00 0.00 4.26
556 570 3.426568 GCGCAGGTGGTTCAGAGC 61.427 66.667 0.30 0.00 0.00 4.09
557 571 3.114616 CGCGCAGGTGGTTCAGAG 61.115 66.667 8.75 0.00 0.00 3.35
558 572 3.858868 GACGCGCAGGTGGTTCAGA 62.859 63.158 5.73 0.00 0.00 3.27
559 573 3.414700 GACGCGCAGGTGGTTCAG 61.415 66.667 5.73 0.00 0.00 3.02
565 579 3.636043 AAACACGACGCGCAGGTG 61.636 61.111 19.19 19.19 37.67 4.00
566 580 3.636043 CAAACACGACGCGCAGGT 61.636 61.111 5.73 0.00 0.00 4.00
567 581 4.368808 CCAAACACGACGCGCAGG 62.369 66.667 5.73 0.00 0.00 4.85
572 586 2.438385 AATCACGCCAAACACGACGC 62.438 55.000 0.00 0.00 0.00 5.19
573 587 0.721155 CAATCACGCCAAACACGACG 60.721 55.000 0.00 0.00 0.00 5.12
574 588 0.306533 ACAATCACGCCAAACACGAC 59.693 50.000 0.00 0.00 0.00 4.34
575 589 1.018148 AACAATCACGCCAAACACGA 58.982 45.000 0.00 0.00 0.00 4.35
576 590 1.833860 AAACAATCACGCCAAACACG 58.166 45.000 0.00 0.00 0.00 4.49
577 591 2.215363 CGAAAACAATCACGCCAAACAC 59.785 45.455 0.00 0.00 0.00 3.32
578 592 2.455032 CGAAAACAATCACGCCAAACA 58.545 42.857 0.00 0.00 0.00 2.83
579 593 1.784283 CCGAAAACAATCACGCCAAAC 59.216 47.619 0.00 0.00 0.00 2.93
580 594 1.405821 ACCGAAAACAATCACGCCAAA 59.594 42.857 0.00 0.00 0.00 3.28
581 595 1.025812 ACCGAAAACAATCACGCCAA 58.974 45.000 0.00 0.00 0.00 4.52
582 596 0.309302 CACCGAAAACAATCACGCCA 59.691 50.000 0.00 0.00 0.00 5.69
583 597 0.589223 TCACCGAAAACAATCACGCC 59.411 50.000 0.00 0.00 0.00 5.68
584 598 1.003331 TGTCACCGAAAACAATCACGC 60.003 47.619 0.00 0.00 0.00 5.34
585 599 2.601266 GGTGTCACCGAAAACAATCACG 60.601 50.000 6.18 0.00 0.00 4.35
586 600 2.616842 AGGTGTCACCGAAAACAATCAC 59.383 45.455 16.44 0.00 44.90 3.06
587 601 2.875933 GAGGTGTCACCGAAAACAATCA 59.124 45.455 16.44 0.00 44.90 2.57
588 602 2.225727 GGAGGTGTCACCGAAAACAATC 59.774 50.000 16.44 5.78 44.90 2.67
589 603 2.227194 GGAGGTGTCACCGAAAACAAT 58.773 47.619 16.44 0.00 44.90 2.71
590 604 1.065345 TGGAGGTGTCACCGAAAACAA 60.065 47.619 16.44 0.00 44.90 2.83
591 605 0.542333 TGGAGGTGTCACCGAAAACA 59.458 50.000 16.44 9.26 44.90 2.83
592 606 1.804748 GATGGAGGTGTCACCGAAAAC 59.195 52.381 16.44 6.89 44.90 2.43
593 607 1.606994 CGATGGAGGTGTCACCGAAAA 60.607 52.381 16.44 4.42 44.90 2.29
594 608 0.037697 CGATGGAGGTGTCACCGAAA 60.038 55.000 16.44 6.22 44.90 3.46
595 609 1.589630 CGATGGAGGTGTCACCGAA 59.410 57.895 16.44 6.58 44.90 4.30
596 610 3.001902 GCGATGGAGGTGTCACCGA 62.002 63.158 16.44 5.19 44.90 4.69
597 611 2.509336 GCGATGGAGGTGTCACCG 60.509 66.667 16.44 4.62 44.90 4.94
598 612 2.125106 GGCGATGGAGGTGTCACC 60.125 66.667 14.68 14.68 38.99 4.02
599 613 2.125106 GGGCGATGGAGGTGTCAC 60.125 66.667 0.00 0.00 0.00 3.67
600 614 2.606213 TGGGCGATGGAGGTGTCA 60.606 61.111 0.00 0.00 0.00 3.58
601 615 2.125106 GTGGGCGATGGAGGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
602 616 4.082523 CGTGGGCGATGGAGGTGT 62.083 66.667 0.00 0.00 41.33 4.16
605 619 4.776322 TTGCGTGGGCGATGGAGG 62.776 66.667 0.00 0.00 44.10 4.30
606 620 1.656818 AAATTGCGTGGGCGATGGAG 61.657 55.000 0.00 0.00 42.60 3.86
607 621 0.393132 TAAATTGCGTGGGCGATGGA 60.393 50.000 0.00 0.00 42.60 3.41
608 622 0.453793 TTAAATTGCGTGGGCGATGG 59.546 50.000 0.00 0.00 42.60 3.51
609 623 2.118683 CATTAAATTGCGTGGGCGATG 58.881 47.619 0.00 0.00 42.60 3.84
610 624 2.020720 TCATTAAATTGCGTGGGCGAT 58.979 42.857 0.00 0.00 45.41 4.58
611 625 1.131504 GTCATTAAATTGCGTGGGCGA 59.868 47.619 0.00 0.00 44.10 5.54
612 626 1.544686 GTCATTAAATTGCGTGGGCG 58.455 50.000 0.00 0.00 44.10 6.13
613 627 1.203523 TGGTCATTAAATTGCGTGGGC 59.796 47.619 0.00 0.00 40.52 5.36
614 628 3.584406 TTGGTCATTAAATTGCGTGGG 57.416 42.857 0.00 0.00 0.00 4.61
615 629 4.747108 TGTTTTGGTCATTAAATTGCGTGG 59.253 37.500 0.00 0.00 0.00 4.94
616 630 5.896922 TGTTTTGGTCATTAAATTGCGTG 57.103 34.783 0.00 0.00 0.00 5.34
617 631 5.812642 TGTTGTTTTGGTCATTAAATTGCGT 59.187 32.000 0.00 0.00 0.00 5.24
618 632 6.019156 AGTGTTGTTTTGGTCATTAAATTGCG 60.019 34.615 0.00 0.00 0.00 4.85
619 633 7.245419 AGTGTTGTTTTGGTCATTAAATTGC 57.755 32.000 0.00 0.00 0.00 3.56
622 636 9.744468 GAGTAAGTGTTGTTTTGGTCATTAAAT 57.256 29.630 0.00 0.00 0.00 1.40
649 663 2.209838 AACACGGCGATGTCATCTAG 57.790 50.000 16.62 4.72 30.55 2.43
788 804 3.119424 GGAGTAAAGTGGGAGAGACGAAG 60.119 52.174 0.00 0.00 0.00 3.79
789 805 2.824341 GGAGTAAAGTGGGAGAGACGAA 59.176 50.000 0.00 0.00 0.00 3.85
790 806 2.041350 AGGAGTAAAGTGGGAGAGACGA 59.959 50.000 0.00 0.00 0.00 4.20
995 1021 1.019673 CCCGTCTTCATCCATGCTTG 58.980 55.000 0.00 0.00 0.00 4.01
1008 1034 2.125766 GAGGTTTTCCCAGCCCGTCT 62.126 60.000 0.00 0.00 41.86 4.18
1037 1063 1.345741 CTTGGGTGCTGAGACTCTCAA 59.654 52.381 10.04 0.00 40.18 3.02
1130 1157 0.457035 GACACGCCATTGCCATCAAT 59.543 50.000 0.00 0.00 43.31 2.57
1133 1160 1.430632 CAGACACGCCATTGCCATC 59.569 57.895 0.00 0.00 0.00 3.51
1160 1187 1.056660 AAACTTCTTCGAGGGCCAGA 58.943 50.000 6.18 1.01 0.00 3.86
1164 1191 2.350868 GCTCAAAAACTTCTTCGAGGGC 60.351 50.000 0.00 0.00 0.00 5.19
1300 1327 2.294512 CCCAGGAAGAAAAACAGTGAGC 59.705 50.000 0.00 0.00 0.00 4.26
1304 1331 4.731313 ATCTCCCAGGAAGAAAAACAGT 57.269 40.909 0.00 0.00 0.00 3.55
1315 1342 4.410228 CAGAGGATGTAAAATCTCCCAGGA 59.590 45.833 0.00 0.00 0.00 3.86
1316 1343 4.410228 TCAGAGGATGTAAAATCTCCCAGG 59.590 45.833 0.00 0.00 0.00 4.45
1317 1344 5.130145 ACTCAGAGGATGTAAAATCTCCCAG 59.870 44.000 1.53 0.00 0.00 4.45
1318 1345 5.032846 ACTCAGAGGATGTAAAATCTCCCA 58.967 41.667 1.53 0.00 0.00 4.37
1319 1346 5.622346 ACTCAGAGGATGTAAAATCTCCC 57.378 43.478 1.53 0.00 0.00 4.30
1320 1347 6.052360 GGAACTCAGAGGATGTAAAATCTCC 58.948 44.000 1.53 0.00 0.00 3.71
1321 1348 6.883744 AGGAACTCAGAGGATGTAAAATCTC 58.116 40.000 1.53 0.00 0.00 2.75
1340 1367 4.692228 TGCCAGAAACAAAAATGAGGAAC 58.308 39.130 0.00 0.00 0.00 3.62
1375 1402 4.008330 ACATGAAGCTGATGAACTTGAGG 58.992 43.478 11.95 0.00 0.00 3.86
1433 1460 3.301794 TGCCAAGACTAATGCCATGAT 57.698 42.857 0.00 0.00 0.00 2.45
1435 1462 3.872511 TTTGCCAAGACTAATGCCATG 57.127 42.857 0.00 0.00 0.00 3.66
1477 1504 2.289002 GCCACAGAACATAGCATAGCAC 59.711 50.000 0.00 0.00 0.00 4.40
1497 1524 1.001706 GGTTTTCTTGACTGAACCGGC 60.002 52.381 0.00 0.00 33.02 6.13
1501 1528 3.627577 TGCAGAGGTTTTCTTGACTGAAC 59.372 43.478 0.00 0.00 32.41 3.18
1516 1543 0.401738 TTCCCCTGAAACTGCAGAGG 59.598 55.000 23.35 16.43 38.14 3.69
1586 1615 5.694995 TCTGGAGAAAGAAAAGGTGAACAT 58.305 37.500 0.00 0.00 0.00 2.71
1635 1664 1.079127 AAGGCAGACGATTCCCACG 60.079 57.895 0.00 0.00 0.00 4.94
1773 1820 6.427853 TGAACACACCAAGATCAGAGTAAATG 59.572 38.462 0.00 0.00 0.00 2.32
1806 1857 1.639298 CTAAGAACCTGCAGCCACGC 61.639 60.000 8.66 0.00 0.00 5.34
1807 1858 0.037326 TCTAAGAACCTGCAGCCACG 60.037 55.000 8.66 0.00 0.00 4.94
1811 1862 2.559440 CCATCTCTAAGAACCTGCAGC 58.441 52.381 8.66 0.00 0.00 5.25
1860 1911 1.054406 ATGATGTCCCCCGGTACCAG 61.054 60.000 13.54 0.00 0.00 4.00
1868 1919 0.475475 TGATGCTGATGATGTCCCCC 59.525 55.000 0.00 0.00 0.00 5.40
1910 1961 4.607606 TCGAGTAGCCGCGCATCG 62.608 66.667 8.75 6.99 34.39 3.84
1958 2009 9.348476 TCTTGTAAATGGCATATGCAGTAAATA 57.652 29.630 28.07 10.76 44.36 1.40
1960 2011 7.637631 TCTTGTAAATGGCATATGCAGTAAA 57.362 32.000 28.07 11.82 44.36 2.01
1992 2045 6.652900 TCACATCGTTTTGACAGAATAATCCA 59.347 34.615 0.00 0.00 0.00 3.41
1993 2046 6.961554 GTCACATCGTTTTGACAGAATAATCC 59.038 38.462 7.69 0.00 41.58 3.01
1998 2073 4.389374 AGGTCACATCGTTTTGACAGAAT 58.611 39.130 13.24 0.00 43.40 2.40
2010 2085 7.602517 AATAAGAAAGAAAGAGGTCACATCG 57.397 36.000 0.00 0.00 0.00 3.84
2027 2102 7.391554 AGCTGACTGCAAGATTGTTAATAAGAA 59.608 33.333 7.11 0.00 45.94 2.52
2029 2104 7.065563 AGAGCTGACTGCAAGATTGTTAATAAG 59.934 37.037 7.11 0.00 45.94 1.73
2031 2106 6.409704 AGAGCTGACTGCAAGATTGTTAATA 58.590 36.000 7.11 0.00 45.94 0.98
2032 2107 5.251764 AGAGCTGACTGCAAGATTGTTAAT 58.748 37.500 7.11 0.00 45.94 1.40
2034 2109 4.248859 GAGAGCTGACTGCAAGATTGTTA 58.751 43.478 7.11 0.00 45.94 2.41
2077 2152 2.052468 AGGTCACCGGTCCTTTTAGTT 58.948 47.619 2.59 0.00 0.00 2.24
2080 2155 2.564062 CACTAGGTCACCGGTCCTTTTA 59.436 50.000 19.24 1.97 34.29 1.52
2092 2167 3.035363 TGAACCAGTGAACACTAGGTCA 58.965 45.455 14.80 14.80 42.82 4.02
2264 2339 6.293407 GACACTTGTCTGCAACTAATGCTTAA 60.293 38.462 1.92 0.00 45.26 1.85
2282 2357 2.477825 CTCTCACACCACAGACACTTG 58.522 52.381 0.00 0.00 0.00 3.16
2285 2360 0.390860 AGCTCTCACACCACAGACAC 59.609 55.000 0.00 0.00 0.00 3.67
2295 2370 5.240891 CAGTAGGAAAATTCAGCTCTCACA 58.759 41.667 0.00 0.00 0.00 3.58
2298 2373 5.091261 TCCAGTAGGAAAATTCAGCTCTC 57.909 43.478 0.00 0.00 42.23 3.20
2395 2470 0.602638 TGCTGGACCGTGAACATGAC 60.603 55.000 0.00 0.00 0.00 3.06
2460 2535 1.972223 CGCGATCGGTATCCCTCCT 60.972 63.158 18.30 0.00 0.00 3.69
2554 2629 6.848451 TGTTTGTTAACTGAAGAAAGGTGAC 58.152 36.000 7.22 0.00 31.39 3.67
2655 2736 0.395586 CCATTCCGGCCATTTCCTCA 60.396 55.000 2.24 0.00 0.00 3.86
2804 2885 1.801178 GCCAAGTCTTACACTGCTGAC 59.199 52.381 0.00 0.00 34.56 3.51
2886 2972 1.542492 CTCTTGCAGCCAACAGGATT 58.458 50.000 0.00 0.00 0.00 3.01
2889 2975 2.960170 GCTCTTGCAGCCAACAGG 59.040 61.111 0.00 0.00 43.17 4.00
2922 3008 1.268896 GCCATGTCGATTGCATCTTGG 60.269 52.381 0.00 0.00 0.00 3.61
2990 3076 3.618750 TGCAGGCCCAAAGCAAGC 61.619 61.111 0.00 0.00 46.50 4.01
3000 3086 4.099266 TGAACCATTATTAATGTGCAGGCC 59.901 41.667 13.87 0.00 37.18 5.19
3020 3106 6.126409 AGAAAGAACAGGTAACATTGGTGAA 58.874 36.000 0.00 0.00 41.41 3.18
3025 3111 6.246420 CCTGAGAAAGAACAGGTAACATTG 57.754 41.667 0.00 0.00 45.82 2.82
3050 3143 3.982424 CTCGGTGATGTTTGCGCGC 62.982 63.158 27.26 27.26 0.00 6.86
3102 3197 2.163818 ATGTATGTTATGGCCGTCCG 57.836 50.000 0.00 0.00 34.14 4.79
3188 3283 3.385193 TGCAGTGATGAACTTCTTCGA 57.615 42.857 0.00 0.00 36.83 3.71
3189 3284 4.675190 AATGCAGTGATGAACTTCTTCG 57.325 40.909 0.00 0.00 36.83 3.79
3223 3318 4.162888 TCCATGCTGTTAGATGACAGTCAT 59.837 41.667 16.37 16.37 46.81 3.06
3240 3335 7.538575 ACACTGTAAATTATCAAGTTCCATGC 58.461 34.615 0.00 0.00 0.00 4.06
3310 3450 5.454966 TGTAGCACAGGTTGAGGATCTATA 58.545 41.667 0.00 0.00 34.92 1.31
3311 3451 4.290093 TGTAGCACAGGTTGAGGATCTAT 58.710 43.478 0.00 0.00 34.92 1.98
3312 3452 3.708451 TGTAGCACAGGTTGAGGATCTA 58.292 45.455 0.00 0.00 34.92 1.98
3424 3567 6.665992 TCAGAATGTGTGTTACTAGGAGTT 57.334 37.500 0.00 0.00 37.40 3.01
3438 4584 8.545229 AACTAGTCTTCAGAATTCAGAATGTG 57.455 34.615 13.02 3.43 37.40 3.21
3464 4610 3.058708 CAGTGTACATTCACCAGCAACTG 60.059 47.826 0.00 0.00 38.91 3.16
3465 4611 3.141398 CAGTGTACATTCACCAGCAACT 58.859 45.455 0.00 0.00 38.91 3.16
3467 4613 1.879380 GCAGTGTACATTCACCAGCAA 59.121 47.619 0.00 0.00 38.67 3.91
3490 4691 0.729690 GCGCTTCAGGATTCAGAACC 59.270 55.000 0.00 0.00 0.00 3.62
3491 4692 1.663135 GAGCGCTTCAGGATTCAGAAC 59.337 52.381 13.26 0.00 0.00 3.01
4113 5339 2.688958 GTGTAGCAGTAGTGGTAGAGGG 59.311 54.545 9.72 0.00 37.33 4.30
4116 5342 4.296621 TCAGTGTAGCAGTAGTGGTAGA 57.703 45.455 9.72 6.13 37.33 2.59
4117 5343 4.640647 TCATCAGTGTAGCAGTAGTGGTAG 59.359 45.833 9.72 0.00 37.33 3.18
4118 5344 4.595986 TCATCAGTGTAGCAGTAGTGGTA 58.404 43.478 5.35 5.35 35.51 3.25
4121 5347 3.854240 CGTTCATCAGTGTAGCAGTAGTG 59.146 47.826 0.00 0.00 0.00 2.74
4122 5348 3.673594 GCGTTCATCAGTGTAGCAGTAGT 60.674 47.826 0.00 0.00 0.00 2.73
4123 5349 2.854777 GCGTTCATCAGTGTAGCAGTAG 59.145 50.000 0.00 0.00 0.00 2.57
4124 5350 2.230266 TGCGTTCATCAGTGTAGCAGTA 59.770 45.455 0.00 0.00 0.00 2.74
4125 5351 1.000843 TGCGTTCATCAGTGTAGCAGT 59.999 47.619 0.00 0.00 0.00 4.40
4126 5352 1.713597 TGCGTTCATCAGTGTAGCAG 58.286 50.000 0.00 0.00 0.00 4.24
4127 5353 1.798223 GTTGCGTTCATCAGTGTAGCA 59.202 47.619 0.00 0.00 0.00 3.49
4130 5356 3.243737 ACAGAGTTGCGTTCATCAGTGTA 60.244 43.478 0.00 0.00 0.00 2.90
4132 5358 2.138320 ACAGAGTTGCGTTCATCAGTG 58.862 47.619 0.00 0.00 0.00 3.66
4133 5359 2.533266 ACAGAGTTGCGTTCATCAGT 57.467 45.000 0.00 0.00 0.00 3.41
4134 5360 3.496130 AGAAACAGAGTTGCGTTCATCAG 59.504 43.478 0.00 0.00 0.00 2.90
4135 5361 3.248363 CAGAAACAGAGTTGCGTTCATCA 59.752 43.478 0.00 0.00 0.00 3.07
4136 5362 3.494626 TCAGAAACAGAGTTGCGTTCATC 59.505 43.478 0.00 0.00 0.00 2.92
4138 5364 2.607635 GTCAGAAACAGAGTTGCGTTCA 59.392 45.455 0.00 0.00 0.00 3.18
4139 5365 2.032808 GGTCAGAAACAGAGTTGCGTTC 60.033 50.000 0.00 0.00 0.00 3.95
4141 5367 1.583054 GGTCAGAAACAGAGTTGCGT 58.417 50.000 0.00 0.00 0.00 5.24
4143 5369 1.876156 CTGGGTCAGAAACAGAGTTGC 59.124 52.381 0.00 0.00 34.21 4.17
4153 5379 2.493675 CGTCAGATCTTCTGGGTCAGAA 59.506 50.000 9.60 9.60 46.50 3.02
4154 5380 2.095461 CGTCAGATCTTCTGGGTCAGA 58.905 52.381 0.00 0.00 44.39 3.27
4155 5381 1.135915 CCGTCAGATCTTCTGGGTCAG 59.864 57.143 0.00 0.00 44.39 3.51
4157 5383 1.187087 ACCGTCAGATCTTCTGGGTC 58.813 55.000 0.00 0.00 44.39 4.46
4159 5385 2.234908 AGAAACCGTCAGATCTTCTGGG 59.765 50.000 0.00 2.20 44.39 4.45
4160 5386 3.516615 GAGAAACCGTCAGATCTTCTGG 58.483 50.000 0.00 0.00 44.39 3.86
4161 5387 3.194542 AGGAGAAACCGTCAGATCTTCTG 59.805 47.826 0.00 0.00 43.82 3.02
4163 5389 3.516615 CAGGAGAAACCGTCAGATCTTC 58.483 50.000 0.00 0.00 44.74 2.87
4164 5390 2.354203 GCAGGAGAAACCGTCAGATCTT 60.354 50.000 0.00 0.00 44.74 2.40
4167 5413 1.270907 AGCAGGAGAAACCGTCAGAT 58.729 50.000 0.00 0.00 44.74 2.90
4169 5415 1.151668 CAAGCAGGAGAAACCGTCAG 58.848 55.000 0.00 0.00 44.74 3.51
4173 5419 2.335712 GGCCAAGCAGGAGAAACCG 61.336 63.158 0.00 0.00 44.74 4.44
4174 5420 2.335712 CGGCCAAGCAGGAGAAACC 61.336 63.158 2.24 0.00 41.22 3.27
4183 5429 0.740149 CATAAATCTGCGGCCAAGCA 59.260 50.000 2.24 3.96 45.96 3.91
4184 5430 0.595825 GCATAAATCTGCGGCCAAGC 60.596 55.000 2.24 0.00 37.71 4.01
4186 5432 1.723608 CGGCATAAATCTGCGGCCAA 61.724 55.000 2.24 0.00 44.82 4.52
4188 5434 2.186826 ACGGCATAAATCTGCGGCC 61.187 57.895 0.00 0.00 43.87 6.13
4190 5436 0.027979 CACACGGCATAAATCTGCGG 59.972 55.000 2.58 2.58 45.09 5.69
4191 5437 0.589729 GCACACGGCATAAATCTGCG 60.590 55.000 0.00 0.00 43.23 5.18
4225 5471 0.097674 GCTGCTGCATTCTTACCACG 59.902 55.000 11.11 0.00 39.41 4.94
4252 5517 9.737427 CTACTACCGGATTAATAATCATGCTAG 57.263 37.037 9.46 9.24 39.71 3.42
4302 5580 3.304659 CCTGCAACCACACAAGTTCATAC 60.305 47.826 0.00 0.00 0.00 2.39
4304 5582 1.682854 CCTGCAACCACACAAGTTCAT 59.317 47.619 0.00 0.00 0.00 2.57
4308 5586 0.817013 CAACCTGCAACCACACAAGT 59.183 50.000 0.00 0.00 0.00 3.16
4309 5587 0.102844 CCAACCTGCAACCACACAAG 59.897 55.000 0.00 0.00 0.00 3.16
4310 5588 1.326213 CCCAACCTGCAACCACACAA 61.326 55.000 0.00 0.00 0.00 3.33
4314 5592 0.179086 CAAACCCAACCTGCAACCAC 60.179 55.000 0.00 0.00 0.00 4.16
4412 5690 3.368236 GGTAAGTTCAGAGATGCAACGTC 59.632 47.826 0.00 0.00 0.00 4.34
4417 5698 4.020307 TCACATGGTAAGTTCAGAGATGCA 60.020 41.667 0.00 0.00 0.00 3.96
4448 5730 3.551454 CGGTATCATTTCGACGGTATGGT 60.551 47.826 0.00 0.00 0.00 3.55
4449 5731 2.984471 CGGTATCATTTCGACGGTATGG 59.016 50.000 0.00 0.00 0.00 2.74
4451 5733 4.670992 CGATCGGTATCATTTCGACGGTAT 60.671 45.833 7.38 0.00 35.70 2.73
4452 5734 3.364267 CGATCGGTATCATTTCGACGGTA 60.364 47.826 7.38 0.00 35.70 4.02
4453 5735 2.603892 CGATCGGTATCATTTCGACGGT 60.604 50.000 7.38 0.00 35.70 4.83
4454 5736 1.976728 CGATCGGTATCATTTCGACGG 59.023 52.381 7.38 0.00 35.70 4.79
4456 5738 1.382419 CGCGATCGGTATCATTTCGAC 59.618 52.381 18.30 0.00 35.70 4.20
4458 5740 0.091344 GCGCGATCGGTATCATTTCG 59.909 55.000 18.30 9.32 35.95 3.46
4460 5742 1.282248 CGGCGCGATCGGTATCATTT 61.282 55.000 18.30 0.00 35.95 2.32
4461 5743 1.733041 CGGCGCGATCGGTATCATT 60.733 57.895 18.30 0.00 35.95 2.57
4462 5744 2.126463 CGGCGCGATCGGTATCAT 60.126 61.111 18.30 0.00 35.95 2.45
4477 5759 2.887568 GATCAGAGCACACGCCGG 60.888 66.667 0.00 0.00 39.83 6.13
4478 5760 2.125952 TGATCAGAGCACACGCCG 60.126 61.111 0.00 0.00 39.83 6.46
4481 5763 0.459237 GTCCCTGATCAGAGCACACG 60.459 60.000 24.62 5.13 0.00 4.49
4482 5764 0.459237 CGTCCCTGATCAGAGCACAC 60.459 60.000 24.62 10.97 0.00 3.82
4484 5766 0.749649 ATCGTCCCTGATCAGAGCAC 59.250 55.000 24.62 14.90 0.00 4.40
4609 6168 0.522180 AGTAGAAGAGCACCGTGACG 59.478 55.000 1.65 0.00 0.00 4.35
4659 6221 1.537202 GTTGGGTTTCTGCTGTGCTAG 59.463 52.381 0.00 0.00 0.00 3.42
4675 6237 2.625737 CTGCAGTCCAGTAGATGTTGG 58.374 52.381 5.25 0.00 36.79 3.77
4685 6247 3.810579 GAGTGAGACTGCAGTCCAG 57.189 57.895 37.09 5.74 45.85 3.86
4732 6300 0.389166 CCCGAAGTGAGACTGCAGTC 60.389 60.000 34.82 34.82 45.08 3.51
5032 6610 2.577059 GGACGGCGACCTTGATGA 59.423 61.111 20.82 0.00 0.00 2.92
5069 6647 4.711949 AACAGCAGGCTCCAGGCG 62.712 66.667 0.00 0.00 46.23 5.52
5084 6662 1.153958 CCGTACCTTCCGGTCGAAC 60.154 63.158 0.00 0.00 44.21 3.95
5085 6663 3.277133 CCGTACCTTCCGGTCGAA 58.723 61.111 0.00 0.00 44.21 3.71
5112 6693 0.036732 ATGAACGGAGGCAGAGCAAA 59.963 50.000 0.00 0.00 0.00 3.68
5114 6695 1.078918 CATGAACGGAGGCAGAGCA 60.079 57.895 0.00 0.00 0.00 4.26
5119 6700 1.675310 CAAGGCATGAACGGAGGCA 60.675 57.895 0.00 0.00 0.00 4.75
5121 6702 1.675310 TGCAAGGCATGAACGGAGG 60.675 57.895 0.00 0.00 31.71 4.30
5134 6715 1.728971 GAGTGAATCGACAGGTGCAAG 59.271 52.381 0.00 0.00 0.00 4.01
5145 6729 2.538437 CAGCCTGAAGAGAGTGAATCG 58.462 52.381 0.00 0.00 0.00 3.34
5315 6899 1.106944 CCACCGGAGCAAAACCTTGT 61.107 55.000 9.46 0.00 34.79 3.16
5317 6901 0.112412 ATCCACCGGAGCAAAACCTT 59.888 50.000 9.46 0.00 34.05 3.50
5346 6948 3.118629 CCTGTGCTATGAGGCTTCAGTAA 60.119 47.826 4.35 0.00 36.61 2.24
5355 6957 4.160439 TCTTCAGTAACCTGTGCTATGAGG 59.840 45.833 0.00 0.00 39.82 3.86
5359 6961 6.476378 ACATTTCTTCAGTAACCTGTGCTAT 58.524 36.000 0.00 0.00 39.82 2.97
5365 6967 8.665685 GTTACCATACATTTCTTCAGTAACCTG 58.334 37.037 0.00 0.00 40.25 4.00
5388 6990 3.818773 CCGAGGAAGCAAAAGAAAGGTTA 59.181 43.478 0.00 0.00 0.00 2.85
5390 6992 2.230660 CCGAGGAAGCAAAAGAAAGGT 58.769 47.619 0.00 0.00 0.00 3.50
5392 6994 1.608590 TGCCGAGGAAGCAAAAGAAAG 59.391 47.619 0.00 0.00 37.28 2.62
5393 6995 1.608590 CTGCCGAGGAAGCAAAAGAAA 59.391 47.619 0.00 0.00 40.35 2.52
5395 6997 0.606401 CCTGCCGAGGAAGCAAAAGA 60.606 55.000 0.00 0.00 42.93 2.52
5408 7017 2.747855 GTTTCTCCCAGCCTGCCG 60.748 66.667 0.00 0.00 0.00 5.69
5409 7018 2.747855 CGTTTCTCCCAGCCTGCC 60.748 66.667 0.00 0.00 0.00 4.85
5448 7057 2.415857 GCTTGAGCTTCATCACAGACTG 59.584 50.000 0.00 0.00 38.21 3.51
5505 7114 1.277557 TCTTTCCTCTCAGCCTGAAGC 59.722 52.381 0.00 0.00 44.25 3.86
5506 7115 2.677613 GCTCTTTCCTCTCAGCCTGAAG 60.678 54.545 0.00 0.00 0.00 3.02
5507 7116 1.277557 GCTCTTTCCTCTCAGCCTGAA 59.722 52.381 0.00 0.00 0.00 3.02
5508 7117 0.901124 GCTCTTTCCTCTCAGCCTGA 59.099 55.000 0.00 0.00 0.00 3.86
5509 7118 0.903942 AGCTCTTTCCTCTCAGCCTG 59.096 55.000 0.00 0.00 31.81 4.85
5510 7119 2.541233 TAGCTCTTTCCTCTCAGCCT 57.459 50.000 0.00 0.00 31.81 4.58
5516 7125 4.006319 GCAACACATTAGCTCTTTCCTCT 58.994 43.478 0.00 0.00 0.00 3.69
5518 7127 3.754965 TGCAACACATTAGCTCTTTCCT 58.245 40.909 0.00 0.00 0.00 3.36
5519 7128 4.022849 AGTTGCAACACATTAGCTCTTTCC 60.023 41.667 30.11 0.00 0.00 3.13
5520 7129 5.113502 AGTTGCAACACATTAGCTCTTTC 57.886 39.130 30.11 0.00 0.00 2.62
5522 7131 5.180117 CAGTAGTTGCAACACATTAGCTCTT 59.820 40.000 30.11 8.44 0.00 2.85
5523 7132 4.692625 CAGTAGTTGCAACACATTAGCTCT 59.307 41.667 30.11 8.95 0.00 4.09
5524 7133 4.690748 TCAGTAGTTGCAACACATTAGCTC 59.309 41.667 30.11 9.76 0.00 4.09
5525 7134 4.641396 TCAGTAGTTGCAACACATTAGCT 58.359 39.130 30.11 13.75 0.00 3.32
5527 7136 6.959361 AGTTTCAGTAGTTGCAACACATTAG 58.041 36.000 30.11 14.78 35.68 1.73
5528 7137 6.935741 AGTTTCAGTAGTTGCAACACATTA 57.064 33.333 30.11 11.92 35.68 1.90
5530 7139 5.835113 AAGTTTCAGTAGTTGCAACACAT 57.165 34.783 30.11 13.34 35.68 3.21
5531 7140 5.048364 ACAAAGTTTCAGTAGTTGCAACACA 60.048 36.000 30.11 15.42 35.68 3.72
5532 7141 5.399013 ACAAAGTTTCAGTAGTTGCAACAC 58.601 37.500 30.11 23.52 35.68 3.32
5533 7142 5.637006 ACAAAGTTTCAGTAGTTGCAACA 57.363 34.783 30.11 14.17 35.68 3.33
5534 7143 7.248437 AGTAACAAAGTTTCAGTAGTTGCAAC 58.752 34.615 22.17 22.17 33.75 4.17
5535 7144 7.385778 AGTAACAAAGTTTCAGTAGTTGCAA 57.614 32.000 0.00 0.00 0.00 4.08
5536 7145 6.995511 AGTAACAAAGTTTCAGTAGTTGCA 57.004 33.333 6.62 0.00 0.00 4.08
5540 7149 7.144000 CGGAGTAGTAACAAAGTTTCAGTAGT 58.856 38.462 0.00 0.00 0.00 2.73
5542 7151 6.449698 CCGGAGTAGTAACAAAGTTTCAGTA 58.550 40.000 0.00 0.00 0.00 2.74
5543 7152 5.295152 CCGGAGTAGTAACAAAGTTTCAGT 58.705 41.667 0.00 0.00 0.00 3.41
5544 7153 4.151867 GCCGGAGTAGTAACAAAGTTTCAG 59.848 45.833 5.05 0.00 0.00 3.02
5545 7154 4.060205 GCCGGAGTAGTAACAAAGTTTCA 58.940 43.478 5.05 0.00 0.00 2.69
5549 7158 5.416947 CATTAGCCGGAGTAGTAACAAAGT 58.583 41.667 5.05 0.00 0.00 2.66
5566 7175 2.298729 TGTTCAGGCCAAAACCATTAGC 59.701 45.455 5.01 0.00 0.00 3.09
5573 7182 4.519540 ATGTATGTGTTCAGGCCAAAAC 57.480 40.909 5.01 9.56 0.00 2.43
5611 7226 6.577638 GCACCCTCCCTTGTTTATCTTTAGTA 60.578 42.308 0.00 0.00 0.00 1.82
5613 7228 4.640647 GCACCCTCCCTTGTTTATCTTTAG 59.359 45.833 0.00 0.00 0.00 1.85
5616 7231 2.378547 TGCACCCTCCCTTGTTTATCTT 59.621 45.455 0.00 0.00 0.00 2.40
5617 7232 1.992557 TGCACCCTCCCTTGTTTATCT 59.007 47.619 0.00 0.00 0.00 1.98
5618 7233 2.507407 TGCACCCTCCCTTGTTTATC 57.493 50.000 0.00 0.00 0.00 1.75
5624 7240 2.579873 CTAATGATGCACCCTCCCTTG 58.420 52.381 0.00 0.00 0.00 3.61
5683 7299 9.676861 CATCATTGGGTATTAGTCATGTCATAT 57.323 33.333 0.00 0.00 0.00 1.78
5688 7304 7.881751 CAGATCATCATTGGGTATTAGTCATGT 59.118 37.037 0.00 0.00 0.00 3.21
5689 7305 8.098912 TCAGATCATCATTGGGTATTAGTCATG 58.901 37.037 0.00 0.00 0.00 3.07
5690 7306 8.211030 TCAGATCATCATTGGGTATTAGTCAT 57.789 34.615 0.00 0.00 0.00 3.06
5691 7307 7.616528 TCAGATCATCATTGGGTATTAGTCA 57.383 36.000 0.00 0.00 0.00 3.41
5692 7308 7.065563 GCATCAGATCATCATTGGGTATTAGTC 59.934 40.741 0.00 0.00 0.00 2.59
5693 7309 6.883217 GCATCAGATCATCATTGGGTATTAGT 59.117 38.462 0.00 0.00 0.00 2.24
5700 7316 4.907809 AGTAGCATCAGATCATCATTGGG 58.092 43.478 0.00 0.00 0.00 4.12
5709 7325 4.507388 GCTGAGAACAAGTAGCATCAGATC 59.493 45.833 4.29 0.00 37.03 2.75
5710 7326 4.161942 AGCTGAGAACAAGTAGCATCAGAT 59.838 41.667 4.29 0.00 37.03 2.90
5711 7327 3.513119 AGCTGAGAACAAGTAGCATCAGA 59.487 43.478 4.29 0.00 37.03 3.27
5712 7328 3.859443 AGCTGAGAACAAGTAGCATCAG 58.141 45.455 0.00 0.00 38.59 2.90
5713 7329 3.259123 TGAGCTGAGAACAAGTAGCATCA 59.741 43.478 0.00 0.00 38.59 3.07
5714 7330 3.854666 TGAGCTGAGAACAAGTAGCATC 58.145 45.455 0.00 0.00 38.59 3.91
5715 7331 3.969287 TGAGCTGAGAACAAGTAGCAT 57.031 42.857 0.00 0.00 38.59 3.79
5716 7332 3.969287 ATGAGCTGAGAACAAGTAGCA 57.031 42.857 0.00 0.00 38.59 3.49
5717 7333 4.248859 TGAATGAGCTGAGAACAAGTAGC 58.751 43.478 0.00 0.00 36.45 3.58
5718 7334 4.869297 CCTGAATGAGCTGAGAACAAGTAG 59.131 45.833 0.00 0.00 0.00 2.57
5719 7335 4.825422 CCTGAATGAGCTGAGAACAAGTA 58.175 43.478 0.00 0.00 0.00 2.24
5720 7336 3.672808 CCTGAATGAGCTGAGAACAAGT 58.327 45.455 0.00 0.00 0.00 3.16
5724 7340 2.008329 CTGCCTGAATGAGCTGAGAAC 58.992 52.381 0.00 0.00 0.00 3.01
5734 7350 2.036571 TGTCAGCGCTGCCTGAATG 61.037 57.895 32.44 7.68 42.98 2.67
5744 7360 0.649475 GTCATCATCAGTGTCAGCGC 59.351 55.000 0.00 0.00 0.00 5.92
5745 7361 1.925185 CTGTCATCATCAGTGTCAGCG 59.075 52.381 0.00 0.00 0.00 5.18
5746 7362 2.969990 ACTGTCATCATCAGTGTCAGC 58.030 47.619 0.00 0.00 43.32 4.26
5752 7368 6.297080 AGAGAAATCACTGTCATCATCAGT 57.703 37.500 0.00 0.00 45.43 3.41
5753 7369 5.754406 GGAGAGAAATCACTGTCATCATCAG 59.246 44.000 0.00 0.00 38.68 2.90
5754 7370 5.424573 AGGAGAGAAATCACTGTCATCATCA 59.575 40.000 0.00 0.00 32.82 3.07
5755 7371 5.754406 CAGGAGAGAAATCACTGTCATCATC 59.246 44.000 0.00 0.00 32.82 2.92
5756 7372 5.424573 TCAGGAGAGAAATCACTGTCATCAT 59.575 40.000 0.00 0.00 32.82 2.45
5771 7387 4.104738 AGGTTTGGTGATTTTCAGGAGAGA 59.895 41.667 0.00 0.00 0.00 3.10
5777 7393 5.010922 TGGAATCAGGTTTGGTGATTTTCAG 59.989 40.000 0.16 0.00 43.26 3.02
5798 7436 7.269522 TGCTCCATATAAACATATCCATGGA 57.730 36.000 18.88 18.88 39.60 3.41
5815 7456 5.843421 AGGACTTATCTACAAGATGCTCCAT 59.157 40.000 0.00 0.00 35.37 3.41
5842 7500 2.093288 TCAGCATCTTGGTGTCATCCTC 60.093 50.000 6.59 0.00 45.34 3.71
6040 7710 6.534634 AGCACAACCCTTCTAATATATCACC 58.465 40.000 0.00 0.00 0.00 4.02
6041 7711 6.366332 CGAGCACAACCCTTCTAATATATCAC 59.634 42.308 0.00 0.00 0.00 3.06
6042 7712 6.455647 CGAGCACAACCCTTCTAATATATCA 58.544 40.000 0.00 0.00 0.00 2.15
6180 7854 2.450476 GAATTCAGGCCACCAATGTCT 58.550 47.619 5.01 0.00 0.00 3.41
6186 7860 2.354729 CCGGAATTCAGGCCACCA 59.645 61.111 11.87 0.00 0.00 4.17
6246 7921 1.302366 CGCCAGACATGCATGTGTAT 58.698 50.000 35.92 18.65 41.95 2.29
6250 7925 0.890542 ACAACGCCAGACATGCATGT 60.891 50.000 31.82 31.82 45.16 3.21
6252 7927 1.672363 CATACAACGCCAGACATGCAT 59.328 47.619 0.00 0.00 0.00 3.96
6260 7935 4.382457 CACAAATTTGTCATACAACGCCAG 59.618 41.667 20.85 1.74 37.90 4.85
6273 7949 5.360714 ACTCAACCATCTCACACAAATTTGT 59.639 36.000 18.13 18.13 43.36 2.83
6282 7958 3.244215 GGACTTCACTCAACCATCTCACA 60.244 47.826 0.00 0.00 0.00 3.58
6283 7959 3.007398 AGGACTTCACTCAACCATCTCAC 59.993 47.826 0.00 0.00 0.00 3.51
6347 8025 0.036294 GTCTGTACCCTGCCAAGTCC 60.036 60.000 0.00 0.00 0.00 3.85
6365 8043 2.586792 GATCCTGCGCTCAAGGGT 59.413 61.111 9.73 2.51 0.00 4.34
6397 8075 1.592669 CTCCACGACATCGATGCCC 60.593 63.158 25.11 15.66 43.02 5.36
6468 8146 0.998226 CCGCGTGACTGTTTGCATTG 60.998 55.000 4.92 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.