Multiple sequence alignment - TraesCS4B01G299600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G299600 chr4B 100.000 3209 0 0 1 3209 586071277 586068069 0.000000e+00 5927.0
1 TraesCS4B01G299600 chr4B 92.033 728 51 5 2488 3209 496566418 496565692 0.000000e+00 1016.0
2 TraesCS4B01G299600 chr4B 89.894 188 19 0 1263 1450 586237179 586236992 3.200000e-60 243.0
3 TraesCS4B01G299600 chr4A 91.702 1422 91 16 600 2004 3341594 3343005 0.000000e+00 1947.0
4 TraesCS4B01G299600 chr4A 90.503 179 17 0 1263 1441 3276913 3277091 1.490000e-58 237.0
5 TraesCS4B01G299600 chr4A 89.266 177 6 5 2325 2490 3343356 3343530 3.240000e-50 209.0
6 TraesCS4B01G299600 chr4A 93.407 91 6 0 2218 2308 3343279 3343369 5.580000e-28 135.0
7 TraesCS4B01G299600 chr4D 90.175 1140 62 22 809 1940 467821547 467820450 0.000000e+00 1439.0
8 TraesCS4B01G299600 chr4D 89.302 215 18 1 603 812 467824415 467824201 6.830000e-67 265.0
9 TraesCS4B01G299600 chr4D 95.238 168 5 1 2325 2489 467820205 467820038 2.460000e-66 263.0
10 TraesCS4B01G299600 chr4D 80.645 310 40 13 1 298 98881082 98881383 4.170000e-54 222.0
11 TraesCS4B01G299600 chr4D 78.981 314 43 14 1 298 489704755 489704449 3.270000e-45 193.0
12 TraesCS4B01G299600 chr4D 77.170 311 55 4 1 298 75790624 75790317 1.980000e-37 167.0
13 TraesCS4B01G299600 chr3B 92.985 727 45 4 2489 3209 143074987 143075713 0.000000e+00 1055.0
14 TraesCS4B01G299600 chr3B 92.127 724 51 4 2489 3206 143146524 143147247 0.000000e+00 1016.0
15 TraesCS4B01G299600 chr3B 91.896 728 51 6 2489 3209 194550663 194551389 0.000000e+00 1011.0
16 TraesCS4B01G299600 chr3B 86.222 225 17 12 298 515 170337846 170337629 6.920000e-57 231.0
17 TraesCS4B01G299600 chr7B 92.181 729 49 6 2489 3209 446086666 446087394 0.000000e+00 1024.0
18 TraesCS4B01G299600 chr7B 92.033 728 50 6 2489 3209 529127723 529126997 0.000000e+00 1016.0
19 TraesCS4B01G299600 chr7B 78.226 124 22 5 2072 2195 63634872 63634754 1.230000e-09 75.0
20 TraesCS4B01G299600 chr2B 92.276 725 48 6 2489 3206 209784853 209785576 0.000000e+00 1022.0
21 TraesCS4B01G299600 chr2B 87.168 226 14 10 298 515 231539257 231539039 3.200000e-60 243.0
22 TraesCS4B01G299600 chr5B 92.055 730 47 9 2489 3209 238948442 238949169 0.000000e+00 1016.0
23 TraesCS4B01G299600 chr5B 91.896 728 51 6 2489 3209 401864001 401863275 0.000000e+00 1011.0
24 TraesCS4B01G299600 chr5B 80.268 299 42 7 1 286 118411975 118412269 3.240000e-50 209.0
25 TraesCS4B01G299600 chr5B 86.207 174 24 0 1269 1442 497504690 497504863 4.230000e-44 189.0
26 TraesCS4B01G299600 chr5A 88.995 209 15 5 291 493 29678340 29678134 5.310000e-63 252.0
27 TraesCS4B01G299600 chr3D 89.950 199 12 7 295 488 506177126 506177321 1.910000e-62 250.0
28 TraesCS4B01G299600 chr7A 89.163 203 13 5 288 485 701211922 701212120 8.890000e-61 244.0
29 TraesCS4B01G299600 chr7A 85.075 201 26 4 99 298 271620532 271620335 5.430000e-48 202.0
30 TraesCS4B01G299600 chr7A 85.417 96 13 1 2070 2165 536776118 536776024 7.330000e-17 99.0
31 TraesCS4B01G299600 chr7A 84.091 88 2 7 2120 2195 454460833 454460920 1.230000e-09 75.0
32 TraesCS4B01G299600 chr7A 84.507 71 7 4 2105 2173 109433988 109433920 2.070000e-07 67.6
33 TraesCS4B01G299600 chr7A 96.875 32 1 0 2121 2152 532687710 532687679 2.000000e-03 54.7
34 TraesCS4B01G299600 chr6D 81.350 311 42 4 1 298 330191478 330191171 4.140000e-59 239.0
35 TraesCS4B01G299600 chr6D 81.250 96 15 2 2070 2165 85164602 85164694 1.230000e-09 75.0
36 TraesCS4B01G299600 chr6B 86.344 227 15 12 298 515 402951591 402951810 1.920000e-57 233.0
37 TraesCS4B01G299600 chr6B 86.283 226 16 12 298 515 121669432 121669214 6.920000e-57 231.0
38 TraesCS4B01G299600 chr1B 86.222 225 17 11 298 515 63310992 63310775 6.920000e-57 231.0
39 TraesCS4B01G299600 chr1B 86.161 224 20 9 298 515 239055658 239055876 6.920000e-57 231.0
40 TraesCS4B01G299600 chr5D 79.421 311 47 5 1 298 526139853 526139547 1.510000e-48 204.0
41 TraesCS4B01G299600 chr5D 86.207 174 24 0 1269 1442 412960785 412960958 4.230000e-44 189.0
42 TraesCS4B01G299600 chr2A 78.846 312 48 8 1 298 431038104 431037797 9.080000e-46 195.0
43 TraesCS4B01G299600 chr1A 78.873 284 45 12 29 298 500421190 500420908 9.150000e-41 178.0
44 TraesCS4B01G299600 chr3A 77.492 311 52 8 1 298 608912660 608912355 1.530000e-38 171.0
45 TraesCS4B01G299600 chr3A 74.216 287 54 17 27 298 699476941 699476660 5.660000e-18 102.0
46 TraesCS4B01G299600 chr2D 83.636 110 17 1 2067 2175 168233723 168233832 5.660000e-18 102.0
47 TraesCS4B01G299600 chr7D 85.897 78 8 3 2100 2175 619292237 619292313 2.650000e-11 80.5
48 TraesCS4B01G299600 chr7D 84.615 78 12 0 485 562 594209484 594209561 9.540000e-11 78.7
49 TraesCS4B01G299600 chr7D 85.915 71 9 1 2105 2174 104945878 104945808 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G299600 chr4B 586068069 586071277 3208 True 5927.000000 5927 100.000000 1 3209 1 chr4B.!!$R2 3208
1 TraesCS4B01G299600 chr4B 496565692 496566418 726 True 1016.000000 1016 92.033000 2488 3209 1 chr4B.!!$R1 721
2 TraesCS4B01G299600 chr4A 3341594 3343530 1936 False 763.666667 1947 91.458333 600 2490 3 chr4A.!!$F2 1890
3 TraesCS4B01G299600 chr4D 467820038 467824415 4377 True 655.666667 1439 91.571667 603 2489 3 chr4D.!!$R3 1886
4 TraesCS4B01G299600 chr3B 143074987 143075713 726 False 1055.000000 1055 92.985000 2489 3209 1 chr3B.!!$F1 720
5 TraesCS4B01G299600 chr3B 143146524 143147247 723 False 1016.000000 1016 92.127000 2489 3206 1 chr3B.!!$F2 717
6 TraesCS4B01G299600 chr3B 194550663 194551389 726 False 1011.000000 1011 91.896000 2489 3209 1 chr3B.!!$F3 720
7 TraesCS4B01G299600 chr7B 446086666 446087394 728 False 1024.000000 1024 92.181000 2489 3209 1 chr7B.!!$F1 720
8 TraesCS4B01G299600 chr7B 529126997 529127723 726 True 1016.000000 1016 92.033000 2489 3209 1 chr7B.!!$R2 720
9 TraesCS4B01G299600 chr2B 209784853 209785576 723 False 1022.000000 1022 92.276000 2489 3206 1 chr2B.!!$F1 717
10 TraesCS4B01G299600 chr5B 238948442 238949169 727 False 1016.000000 1016 92.055000 2489 3209 1 chr5B.!!$F2 720
11 TraesCS4B01G299600 chr5B 401863275 401864001 726 True 1011.000000 1011 91.896000 2489 3209 1 chr5B.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 583 0.031585 TATCACGTACATGCCTCGGC 59.968 55.0 0.0 0.0 42.35 5.54 F
1042 3713 0.234106 CACACAGCAAGAAGTGAGCG 59.766 55.0 0.0 0.0 39.03 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 4166 0.170339 GGTCAATAACAAGGCACGGC 59.830 55.0 0.0 0.0 0.00 5.68 R
2870 5652 0.995024 AGCTTTCCACCAGCCATAGT 59.005 50.0 0.0 0.0 38.09 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.701587 TCTTCTGTTGTGGTTGCGG 58.298 52.632 0.00 0.00 0.00 5.69
19 20 0.107410 TCTTCTGTTGTGGTTGCGGT 60.107 50.000 0.00 0.00 0.00 5.68
20 21 0.738389 CTTCTGTTGTGGTTGCGGTT 59.262 50.000 0.00 0.00 0.00 4.44
21 22 0.453793 TTCTGTTGTGGTTGCGGTTG 59.546 50.000 0.00 0.00 0.00 3.77
22 23 1.588667 CTGTTGTGGTTGCGGTTGC 60.589 57.895 0.00 0.00 43.20 4.17
34 35 4.029809 GGTTGCGGTGGCTAGGGT 62.030 66.667 0.00 0.00 40.82 4.34
35 36 2.033602 GTTGCGGTGGCTAGGGTT 59.966 61.111 0.00 0.00 40.82 4.11
36 37 2.038837 GTTGCGGTGGCTAGGGTTC 61.039 63.158 0.00 0.00 40.82 3.62
37 38 2.221299 TTGCGGTGGCTAGGGTTCT 61.221 57.895 0.00 0.00 40.82 3.01
38 39 2.180159 TTGCGGTGGCTAGGGTTCTC 62.180 60.000 0.00 0.00 40.82 2.87
39 40 2.359967 GCGGTGGCTAGGGTTCTCT 61.360 63.158 0.00 0.00 35.83 3.10
40 41 1.900545 GCGGTGGCTAGGGTTCTCTT 61.901 60.000 0.00 0.00 35.83 2.85
41 42 0.613777 CGGTGGCTAGGGTTCTCTTT 59.386 55.000 0.00 0.00 0.00 2.52
42 43 1.003233 CGGTGGCTAGGGTTCTCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
43 44 2.552373 CGGTGGCTAGGGTTCTCTTTTT 60.552 50.000 0.00 0.00 0.00 1.94
44 45 3.082548 GGTGGCTAGGGTTCTCTTTTTC 58.917 50.000 0.00 0.00 0.00 2.29
45 46 3.082548 GTGGCTAGGGTTCTCTTTTTCC 58.917 50.000 0.00 0.00 0.00 3.13
46 47 2.041216 TGGCTAGGGTTCTCTTTTTCCC 59.959 50.000 0.00 0.00 40.16 3.97
51 52 2.724454 GGGTTCTCTTTTTCCCTAGGC 58.276 52.381 2.05 0.00 37.18 3.93
52 53 2.620886 GGGTTCTCTTTTTCCCTAGGCC 60.621 54.545 2.05 0.00 37.18 5.19
53 54 2.309162 GGTTCTCTTTTTCCCTAGGCCT 59.691 50.000 11.78 11.78 0.00 5.19
54 55 3.611970 GTTCTCTTTTTCCCTAGGCCTC 58.388 50.000 9.68 0.00 0.00 4.70
55 56 3.207044 TCTCTTTTTCCCTAGGCCTCT 57.793 47.619 9.68 0.00 0.00 3.69
56 57 3.532102 TCTCTTTTTCCCTAGGCCTCTT 58.468 45.455 9.68 0.00 0.00 2.85
57 58 3.519913 TCTCTTTTTCCCTAGGCCTCTTC 59.480 47.826 9.68 0.00 0.00 2.87
58 59 3.256704 TCTTTTTCCCTAGGCCTCTTCA 58.743 45.455 9.68 0.00 0.00 3.02
59 60 3.009143 TCTTTTTCCCTAGGCCTCTTCAC 59.991 47.826 9.68 0.00 0.00 3.18
60 61 0.902531 TTTCCCTAGGCCTCTTCACG 59.097 55.000 9.68 0.00 0.00 4.35
61 62 0.040646 TTCCCTAGGCCTCTTCACGA 59.959 55.000 9.68 0.00 0.00 4.35
62 63 0.040646 TCCCTAGGCCTCTTCACGAA 59.959 55.000 9.68 0.00 0.00 3.85
63 64 0.902531 CCCTAGGCCTCTTCACGAAA 59.097 55.000 9.68 0.00 0.00 3.46
64 65 1.134670 CCCTAGGCCTCTTCACGAAAG 60.135 57.143 9.68 0.00 36.22 2.62
91 92 7.914427 TCTTGTATAGACATGGTGGAACTAT 57.086 36.000 0.00 0.00 39.28 2.12
92 93 8.319057 TCTTGTATAGACATGGTGGAACTATT 57.681 34.615 0.00 0.00 35.00 1.73
93 94 8.204160 TCTTGTATAGACATGGTGGAACTATTG 58.796 37.037 0.00 0.00 35.00 1.90
94 95 6.826668 TGTATAGACATGGTGGAACTATTGG 58.173 40.000 0.00 0.00 35.00 3.16
95 96 3.004752 AGACATGGTGGAACTATTGGC 57.995 47.619 0.00 0.00 35.00 4.52
96 97 2.308570 AGACATGGTGGAACTATTGGCA 59.691 45.455 0.00 0.00 35.00 4.92
97 98 2.423538 GACATGGTGGAACTATTGGCAC 59.576 50.000 0.00 0.00 35.00 5.01
98 99 1.750778 CATGGTGGAACTATTGGCACC 59.249 52.381 0.00 0.00 35.00 5.01
99 100 1.072266 TGGTGGAACTATTGGCACCT 58.928 50.000 0.00 0.00 36.74 4.00
100 101 1.004277 TGGTGGAACTATTGGCACCTC 59.996 52.381 0.00 0.00 36.74 3.85
101 102 1.004277 GGTGGAACTATTGGCACCTCA 59.996 52.381 0.00 0.00 36.74 3.86
102 103 2.357154 GGTGGAACTATTGGCACCTCAT 60.357 50.000 0.00 0.00 36.74 2.90
103 104 3.118038 GGTGGAACTATTGGCACCTCATA 60.118 47.826 0.00 0.00 36.74 2.15
104 105 3.877508 GTGGAACTATTGGCACCTCATAC 59.122 47.826 0.00 0.00 0.00 2.39
105 106 3.131396 GGAACTATTGGCACCTCATACG 58.869 50.000 0.00 0.00 0.00 3.06
106 107 3.181469 GGAACTATTGGCACCTCATACGA 60.181 47.826 0.00 0.00 0.00 3.43
107 108 3.735237 ACTATTGGCACCTCATACGAG 57.265 47.619 0.00 0.00 39.16 4.18
108 109 3.031736 ACTATTGGCACCTCATACGAGT 58.968 45.455 0.00 0.00 37.59 4.18
109 110 2.315925 ATTGGCACCTCATACGAGTG 57.684 50.000 0.00 0.00 37.59 3.51
110 111 0.391130 TTGGCACCTCATACGAGTGC 60.391 55.000 5.82 5.82 41.56 4.40
111 112 1.257750 TGGCACCTCATACGAGTGCT 61.258 55.000 13.39 0.00 41.78 4.40
112 113 0.108138 GGCACCTCATACGAGTGCTT 60.108 55.000 13.39 0.00 41.78 3.91
113 114 1.002366 GCACCTCATACGAGTGCTTG 58.998 55.000 7.09 0.00 40.32 4.01
114 115 1.002366 CACCTCATACGAGTGCTTGC 58.998 55.000 0.00 0.00 37.59 4.01
115 116 0.458543 ACCTCATACGAGTGCTTGCG 60.459 55.000 0.00 0.00 37.59 4.85
116 117 1.148157 CCTCATACGAGTGCTTGCGG 61.148 60.000 0.00 0.00 37.59 5.69
117 118 0.458543 CTCATACGAGTGCTTGCGGT 60.459 55.000 0.00 0.00 34.29 5.68
118 119 0.457853 TCATACGAGTGCTTGCGGTC 60.458 55.000 0.00 0.00 0.00 4.79
119 120 1.516386 ATACGAGTGCTTGCGGTCG 60.516 57.895 12.70 12.70 38.40 4.79
120 121 2.209064 ATACGAGTGCTTGCGGTCGT 62.209 55.000 20.23 20.23 46.74 4.34
121 122 1.576451 TACGAGTGCTTGCGGTCGTA 61.576 55.000 18.70 18.70 43.53 3.43
122 123 2.434134 CGAGTGCTTGCGGTCGTAC 61.434 63.158 7.85 0.00 0.00 3.67
123 124 2.430244 AGTGCTTGCGGTCGTACG 60.430 61.111 9.53 9.53 0.00 3.67
124 125 2.429571 GTGCTTGCGGTCGTACGA 60.430 61.111 15.28 15.28 35.47 3.43
125 126 2.017783 GTGCTTGCGGTCGTACGAA 61.018 57.895 21.39 0.45 35.47 3.85
126 127 1.300003 TGCTTGCGGTCGTACGAAA 60.300 52.632 21.39 9.75 35.47 3.46
128 129 1.952266 GCTTGCGGTCGTACGAAAGG 61.952 60.000 21.39 12.91 46.99 3.11
129 130 0.665369 CTTGCGGTCGTACGAAAGGT 60.665 55.000 21.39 0.00 44.02 3.50
130 131 0.664166 TTGCGGTCGTACGAAAGGTC 60.664 55.000 21.39 6.92 35.47 3.85
144 145 5.968387 CGAAAGGTCGTATATTTTGCTCT 57.032 39.130 0.00 0.00 42.53 4.09
145 146 5.728255 CGAAAGGTCGTATATTTTGCTCTG 58.272 41.667 0.00 0.00 42.53 3.35
146 147 5.518847 CGAAAGGTCGTATATTTTGCTCTGA 59.481 40.000 0.00 0.00 42.53 3.27
147 148 6.201044 CGAAAGGTCGTATATTTTGCTCTGAT 59.799 38.462 0.00 0.00 42.53 2.90
148 149 6.851222 AAGGTCGTATATTTTGCTCTGATG 57.149 37.500 0.00 0.00 0.00 3.07
149 150 4.752101 AGGTCGTATATTTTGCTCTGATGC 59.248 41.667 0.00 0.00 0.00 3.91
150 151 4.511454 GGTCGTATATTTTGCTCTGATGCA 59.489 41.667 0.00 0.00 41.65 3.96
151 152 5.435557 GTCGTATATTTTGCTCTGATGCAC 58.564 41.667 0.00 0.00 43.20 4.57
152 153 4.511454 TCGTATATTTTGCTCTGATGCACC 59.489 41.667 0.00 0.00 43.20 5.01
153 154 4.512944 CGTATATTTTGCTCTGATGCACCT 59.487 41.667 0.00 0.00 43.20 4.00
154 155 5.696270 CGTATATTTTGCTCTGATGCACCTA 59.304 40.000 0.00 0.00 43.20 3.08
155 156 6.128715 CGTATATTTTGCTCTGATGCACCTAG 60.129 42.308 0.00 0.00 43.20 3.02
156 157 3.423539 TTTTGCTCTGATGCACCTAGT 57.576 42.857 0.00 0.00 43.20 2.57
157 158 2.391616 TTGCTCTGATGCACCTAGTG 57.608 50.000 0.00 0.00 43.20 2.74
158 159 0.538584 TGCTCTGATGCACCTAGTGG 59.461 55.000 0.00 0.00 38.12 4.00
159 160 0.813210 GCTCTGATGCACCTAGTGGC 60.813 60.000 0.00 0.00 36.63 5.01
160 161 0.829333 CTCTGATGCACCTAGTGGCT 59.171 55.000 0.00 0.00 36.63 4.75
161 162 1.209019 CTCTGATGCACCTAGTGGCTT 59.791 52.381 0.00 0.00 36.63 4.35
162 163 1.065926 TCTGATGCACCTAGTGGCTTG 60.066 52.381 0.00 0.00 36.63 4.01
163 164 0.035152 TGATGCACCTAGTGGCTTGG 60.035 55.000 0.00 0.00 36.63 3.61
164 165 1.379044 ATGCACCTAGTGGCTTGGC 60.379 57.895 0.00 0.00 36.63 4.52
165 166 1.856539 ATGCACCTAGTGGCTTGGCT 61.857 55.000 0.00 0.00 36.63 4.75
166 167 1.746991 GCACCTAGTGGCTTGGCTC 60.747 63.158 0.00 0.00 36.63 4.70
167 168 1.986413 CACCTAGTGGCTTGGCTCT 59.014 57.895 4.34 4.34 36.63 4.09
168 169 0.107945 CACCTAGTGGCTTGGCTCTC 60.108 60.000 2.15 0.00 36.63 3.20
169 170 1.268283 ACCTAGTGGCTTGGCTCTCC 61.268 60.000 2.15 0.00 36.63 3.71
170 171 1.267574 CCTAGTGGCTTGGCTCTCCA 61.268 60.000 2.15 0.00 41.55 3.86
171 172 0.835941 CTAGTGGCTTGGCTCTCCAT 59.164 55.000 2.15 0.00 43.05 3.41
172 173 2.042464 CTAGTGGCTTGGCTCTCCATA 58.958 52.381 2.15 0.00 43.05 2.74
173 174 1.516110 AGTGGCTTGGCTCTCCATAT 58.484 50.000 0.00 0.00 43.05 1.78
174 175 1.142465 AGTGGCTTGGCTCTCCATATG 59.858 52.381 0.00 0.00 43.05 1.78
175 176 0.475475 TGGCTTGGCTCTCCATATGG 59.525 55.000 16.25 16.25 43.05 2.74
176 177 0.767375 GGCTTGGCTCTCCATATGGA 59.233 55.000 23.17 23.17 43.05 3.41
177 178 1.143684 GGCTTGGCTCTCCATATGGAA 59.856 52.381 24.54 14.44 44.91 3.53
178 179 2.502295 GCTTGGCTCTCCATATGGAAG 58.498 52.381 24.54 22.29 44.91 3.46
179 180 2.158696 GCTTGGCTCTCCATATGGAAGT 60.159 50.000 24.54 0.00 44.91 3.01
180 181 3.686691 GCTTGGCTCTCCATATGGAAGTT 60.687 47.826 24.54 0.00 44.91 2.66
181 182 3.565764 TGGCTCTCCATATGGAAGTTG 57.434 47.619 24.54 13.41 44.91 3.16
182 183 2.225467 GGCTCTCCATATGGAAGTTGC 58.775 52.381 24.54 22.11 44.91 4.17
183 184 2.158696 GGCTCTCCATATGGAAGTTGCT 60.159 50.000 24.54 0.00 44.91 3.91
184 185 3.137533 GCTCTCCATATGGAAGTTGCTC 58.862 50.000 24.54 8.64 44.91 4.26
185 186 3.737850 CTCTCCATATGGAAGTTGCTCC 58.262 50.000 24.54 0.00 44.91 4.70
193 194 3.228188 TGGAAGTTGCTCCATTTGACT 57.772 42.857 0.00 0.00 40.71 3.41
194 195 3.565307 TGGAAGTTGCTCCATTTGACTT 58.435 40.909 0.00 0.00 40.71 3.01
195 196 3.318839 TGGAAGTTGCTCCATTTGACTTG 59.681 43.478 0.00 0.00 40.71 3.16
196 197 3.569701 GGAAGTTGCTCCATTTGACTTGA 59.430 43.478 0.00 0.00 35.36 3.02
197 198 4.219288 GGAAGTTGCTCCATTTGACTTGAT 59.781 41.667 0.00 0.00 35.36 2.57
198 199 5.279156 GGAAGTTGCTCCATTTGACTTGATT 60.279 40.000 0.00 0.00 35.36 2.57
199 200 5.796424 AGTTGCTCCATTTGACTTGATTT 57.204 34.783 0.00 0.00 0.00 2.17
200 201 5.535333 AGTTGCTCCATTTGACTTGATTTG 58.465 37.500 0.00 0.00 0.00 2.32
201 202 3.916761 TGCTCCATTTGACTTGATTTGC 58.083 40.909 0.00 0.00 0.00 3.68
202 203 3.321396 TGCTCCATTTGACTTGATTTGCA 59.679 39.130 0.00 0.00 0.00 4.08
203 204 3.924686 GCTCCATTTGACTTGATTTGCAG 59.075 43.478 0.00 0.00 0.00 4.41
204 205 4.560108 GCTCCATTTGACTTGATTTGCAGT 60.560 41.667 0.00 0.00 0.00 4.40
205 206 5.335897 GCTCCATTTGACTTGATTTGCAGTA 60.336 40.000 0.00 0.00 0.00 2.74
206 207 6.258230 TCCATTTGACTTGATTTGCAGTAG 57.742 37.500 0.00 0.00 0.00 2.57
207 208 5.769662 TCCATTTGACTTGATTTGCAGTAGT 59.230 36.000 0.00 0.00 0.00 2.73
208 209 6.072508 TCCATTTGACTTGATTTGCAGTAGTC 60.073 38.462 0.00 0.00 35.73 2.59
209 210 5.689383 TTTGACTTGATTTGCAGTAGTCC 57.311 39.130 10.95 0.00 34.76 3.85
210 211 4.623932 TGACTTGATTTGCAGTAGTCCT 57.376 40.909 10.95 0.00 34.76 3.85
211 212 4.569943 TGACTTGATTTGCAGTAGTCCTC 58.430 43.478 10.95 0.00 34.76 3.71
212 213 4.284490 TGACTTGATTTGCAGTAGTCCTCT 59.716 41.667 10.95 0.00 34.76 3.69
213 214 5.221722 TGACTTGATTTGCAGTAGTCCTCTT 60.222 40.000 10.95 0.00 34.76 2.85
214 215 5.625150 ACTTGATTTGCAGTAGTCCTCTTT 58.375 37.500 0.00 0.00 0.00 2.52
215 216 5.471456 ACTTGATTTGCAGTAGTCCTCTTTG 59.529 40.000 0.00 0.00 0.00 2.77
216 217 5.227569 TGATTTGCAGTAGTCCTCTTTGA 57.772 39.130 0.00 0.00 0.00 2.69
217 218 5.809001 TGATTTGCAGTAGTCCTCTTTGAT 58.191 37.500 0.00 0.00 0.00 2.57
218 219 6.240894 TGATTTGCAGTAGTCCTCTTTGATT 58.759 36.000 0.00 0.00 0.00 2.57
219 220 6.716628 TGATTTGCAGTAGTCCTCTTTGATTT 59.283 34.615 0.00 0.00 0.00 2.17
220 221 6.560253 TTTGCAGTAGTCCTCTTTGATTTC 57.440 37.500 0.00 0.00 0.00 2.17
221 222 4.579869 TGCAGTAGTCCTCTTTGATTTCC 58.420 43.478 0.00 0.00 0.00 3.13
222 223 4.287067 TGCAGTAGTCCTCTTTGATTTCCT 59.713 41.667 0.00 0.00 0.00 3.36
223 224 5.221925 TGCAGTAGTCCTCTTTGATTTCCTT 60.222 40.000 0.00 0.00 0.00 3.36
224 225 5.352846 GCAGTAGTCCTCTTTGATTTCCTTC 59.647 44.000 0.00 0.00 0.00 3.46
225 226 5.877564 CAGTAGTCCTCTTTGATTTCCTTCC 59.122 44.000 0.00 0.00 0.00 3.46
226 227 5.548056 AGTAGTCCTCTTTGATTTCCTTCCA 59.452 40.000 0.00 0.00 0.00 3.53
227 228 5.527026 AGTCCTCTTTGATTTCCTTCCAT 57.473 39.130 0.00 0.00 0.00 3.41
228 229 6.642733 AGTCCTCTTTGATTTCCTTCCATA 57.357 37.500 0.00 0.00 0.00 2.74
229 230 7.218314 AGTCCTCTTTGATTTCCTTCCATAT 57.782 36.000 0.00 0.00 0.00 1.78
230 231 8.337118 AGTCCTCTTTGATTTCCTTCCATATA 57.663 34.615 0.00 0.00 0.00 0.86
231 232 8.953665 AGTCCTCTTTGATTTCCTTCCATATAT 58.046 33.333 0.00 0.00 0.00 0.86
232 233 9.007901 GTCCTCTTTGATTTCCTTCCATATATG 57.992 37.037 5.68 5.68 0.00 1.78
233 234 8.948362 TCCTCTTTGATTTCCTTCCATATATGA 58.052 33.333 14.54 0.00 0.00 2.15
234 235 9.007901 CCTCTTTGATTTCCTTCCATATATGAC 57.992 37.037 14.54 0.00 0.00 3.06
235 236 9.565090 CTCTTTGATTTCCTTCCATATATGACA 57.435 33.333 14.54 0.00 0.00 3.58
236 237 9.919416 TCTTTGATTTCCTTCCATATATGACAA 57.081 29.630 14.54 5.71 0.00 3.18
240 241 9.300681 TGATTTCCTTCCATATATGACAATTCC 57.699 33.333 14.54 0.00 0.00 3.01
241 242 9.525826 GATTTCCTTCCATATATGACAATTCCT 57.474 33.333 14.54 0.00 0.00 3.36
242 243 8.696043 TTTCCTTCCATATATGACAATTCCTG 57.304 34.615 14.54 0.00 0.00 3.86
243 244 7.392766 TCCTTCCATATATGACAATTCCTGT 57.607 36.000 14.54 0.00 42.61 4.00
293 294 8.934023 TTTTCTTTGGAAGGATTAGCTTTAGA 57.066 30.769 0.00 0.00 32.61 2.10
294 295 8.934023 TTTCTTTGGAAGGATTAGCTTTAGAA 57.066 30.769 0.00 0.00 32.61 2.10
295 296 8.934023 TTCTTTGGAAGGATTAGCTTTAGAAA 57.066 30.769 0.00 0.00 0.00 2.52
296 297 9.533831 TTCTTTGGAAGGATTAGCTTTAGAAAT 57.466 29.630 0.00 0.00 0.00 2.17
299 300 8.980481 TTGGAAGGATTAGCTTTAGAAATAGG 57.020 34.615 0.00 0.00 0.00 2.57
300 301 7.518188 TGGAAGGATTAGCTTTAGAAATAGGG 58.482 38.462 0.00 0.00 0.00 3.53
301 302 7.128883 TGGAAGGATTAGCTTTAGAAATAGGGT 59.871 37.037 0.00 0.00 0.00 4.34
302 303 7.662258 GGAAGGATTAGCTTTAGAAATAGGGTC 59.338 40.741 0.00 0.00 0.00 4.46
303 304 7.939376 AGGATTAGCTTTAGAAATAGGGTCT 57.061 36.000 0.00 0.00 0.00 3.85
304 305 7.740805 AGGATTAGCTTTAGAAATAGGGTCTG 58.259 38.462 0.00 0.00 0.00 3.51
305 306 7.348537 AGGATTAGCTTTAGAAATAGGGTCTGT 59.651 37.037 0.00 0.00 0.00 3.41
306 307 7.658167 GGATTAGCTTTAGAAATAGGGTCTGTC 59.342 40.741 0.00 0.00 0.00 3.51
307 308 7.735326 TTAGCTTTAGAAATAGGGTCTGTCT 57.265 36.000 0.00 0.00 0.00 3.41
308 309 8.834004 TTAGCTTTAGAAATAGGGTCTGTCTA 57.166 34.615 0.00 0.00 0.00 2.59
309 310 7.354751 AGCTTTAGAAATAGGGTCTGTCTAG 57.645 40.000 0.00 0.00 0.00 2.43
310 311 6.325286 AGCTTTAGAAATAGGGTCTGTCTAGG 59.675 42.308 0.00 0.00 0.00 3.02
311 312 6.324254 GCTTTAGAAATAGGGTCTGTCTAGGA 59.676 42.308 0.00 0.00 0.00 2.94
312 313 7.657023 TTTAGAAATAGGGTCTGTCTAGGAC 57.343 40.000 0.00 0.00 0.00 3.85
313 314 5.208294 AGAAATAGGGTCTGTCTAGGACA 57.792 43.478 0.43 0.43 40.50 4.02
314 315 4.957327 AGAAATAGGGTCTGTCTAGGACAC 59.043 45.833 0.00 0.00 37.67 3.67
315 316 4.332683 AATAGGGTCTGTCTAGGACACA 57.667 45.455 3.18 0.00 39.36 3.72
316 317 2.930109 AGGGTCTGTCTAGGACACAT 57.070 50.000 3.18 0.00 39.36 3.21
317 318 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
318 319 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
319 320 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
320 321 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
321 322 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
322 323 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
323 324 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
352 353 9.988815 ACATAGTTATGTCACATCTAGATTTCC 57.011 33.333 1.33 0.00 42.96 3.13
353 354 9.987272 CATAGTTATGTCACATCTAGATTTCCA 57.013 33.333 1.33 0.00 0.00 3.53
354 355 9.988815 ATAGTTATGTCACATCTAGATTTCCAC 57.011 33.333 1.33 0.00 0.00 4.02
355 356 8.083828 AGTTATGTCACATCTAGATTTCCACT 57.916 34.615 1.33 0.00 0.00 4.00
356 357 8.543774 AGTTATGTCACATCTAGATTTCCACTT 58.456 33.333 1.33 0.00 0.00 3.16
357 358 9.167311 GTTATGTCACATCTAGATTTCCACTTT 57.833 33.333 1.33 0.00 0.00 2.66
358 359 7.621428 ATGTCACATCTAGATTTCCACTTTG 57.379 36.000 1.33 0.00 0.00 2.77
359 360 6.533730 TGTCACATCTAGATTTCCACTTTGT 58.466 36.000 1.33 0.00 0.00 2.83
360 361 6.998074 TGTCACATCTAGATTTCCACTTTGTT 59.002 34.615 1.33 0.00 0.00 2.83
361 362 7.502226 TGTCACATCTAGATTTCCACTTTGTTT 59.498 33.333 1.33 0.00 0.00 2.83
362 363 7.805071 GTCACATCTAGATTTCCACTTTGTTTG 59.195 37.037 1.33 0.00 0.00 2.93
363 364 7.502226 TCACATCTAGATTTCCACTTTGTTTGT 59.498 33.333 1.33 0.00 0.00 2.83
364 365 7.592533 CACATCTAGATTTCCACTTTGTTTGTG 59.407 37.037 1.33 0.82 35.39 3.33
424 425 9.518906 TCTTGTTGCTGCATTATATATTTGTTG 57.481 29.630 1.84 0.00 0.00 3.33
425 426 8.645730 TTGTTGCTGCATTATATATTTGTTGG 57.354 30.769 1.84 0.00 0.00 3.77
426 427 8.005192 TGTTGCTGCATTATATATTTGTTGGA 57.995 30.769 1.84 0.00 0.00 3.53
427 428 8.136800 TGTTGCTGCATTATATATTTGTTGGAG 58.863 33.333 1.84 0.00 0.00 3.86
428 429 6.680810 TGCTGCATTATATATTTGTTGGAGC 58.319 36.000 16.37 16.37 45.25 4.70
429 430 6.491062 TGCTGCATTATATATTTGTTGGAGCT 59.509 34.615 20.30 0.00 45.26 4.09
430 431 7.014518 TGCTGCATTATATATTTGTTGGAGCTT 59.985 33.333 20.30 0.00 45.26 3.74
431 432 8.514594 GCTGCATTATATATTTGTTGGAGCTTA 58.485 33.333 16.14 0.00 42.82 3.09
433 434 9.791801 TGCATTATATATTTGTTGGAGCTTAGA 57.208 29.630 0.00 0.00 0.00 2.10
442 443 7.792374 TTTGTTGGAGCTTAGATATGACATC 57.208 36.000 0.00 0.00 0.00 3.06
443 444 5.858381 TGTTGGAGCTTAGATATGACATCC 58.142 41.667 0.00 0.00 0.00 3.51
444 445 5.604231 TGTTGGAGCTTAGATATGACATCCT 59.396 40.000 0.00 0.00 0.00 3.24
445 446 6.100279 TGTTGGAGCTTAGATATGACATCCTT 59.900 38.462 0.00 0.00 0.00 3.36
446 447 7.290014 TGTTGGAGCTTAGATATGACATCCTTA 59.710 37.037 0.00 0.00 0.00 2.69
447 448 7.855784 TGGAGCTTAGATATGACATCCTTAA 57.144 36.000 0.00 0.00 0.00 1.85
448 449 8.262601 TGGAGCTTAGATATGACATCCTTAAA 57.737 34.615 0.00 0.00 0.00 1.52
449 450 8.713971 TGGAGCTTAGATATGACATCCTTAAAA 58.286 33.333 0.00 0.00 0.00 1.52
450 451 9.561069 GGAGCTTAGATATGACATCCTTAAAAA 57.439 33.333 0.00 0.00 0.00 1.94
477 478 9.467258 ACATCAAAATGTGAATTAGACAAACTG 57.533 29.630 0.00 0.00 44.51 3.16
478 479 9.467258 CATCAAAATGTGAATTAGACAAACTGT 57.533 29.630 0.00 0.00 40.50 3.55
508 509 5.986004 AACCAAGAAGTAACAAAGACTCG 57.014 39.130 0.00 0.00 0.00 4.18
509 510 5.272283 ACCAAGAAGTAACAAAGACTCGA 57.728 39.130 0.00 0.00 0.00 4.04
510 511 5.855045 ACCAAGAAGTAACAAAGACTCGAT 58.145 37.500 0.00 0.00 0.00 3.59
511 512 5.696724 ACCAAGAAGTAACAAAGACTCGATG 59.303 40.000 0.00 0.00 0.00 3.84
512 513 5.926542 CCAAGAAGTAACAAAGACTCGATGA 59.073 40.000 0.00 0.00 0.00 2.92
513 514 6.423905 CCAAGAAGTAACAAAGACTCGATGAA 59.576 38.462 0.00 0.00 0.00 2.57
514 515 7.042051 CCAAGAAGTAACAAAGACTCGATGAAA 60.042 37.037 0.00 0.00 0.00 2.69
515 516 7.409465 AGAAGTAACAAAGACTCGATGAAAC 57.591 36.000 0.00 0.00 0.00 2.78
516 517 6.424207 AGAAGTAACAAAGACTCGATGAAACC 59.576 38.462 0.00 0.00 0.00 3.27
517 518 5.607477 AGTAACAAAGACTCGATGAAACCA 58.393 37.500 0.00 0.00 0.00 3.67
518 519 6.053005 AGTAACAAAGACTCGATGAAACCAA 58.947 36.000 0.00 0.00 0.00 3.67
519 520 5.828299 AACAAAGACTCGATGAAACCAAA 57.172 34.783 0.00 0.00 0.00 3.28
520 521 6.391227 AACAAAGACTCGATGAAACCAAAT 57.609 33.333 0.00 0.00 0.00 2.32
521 522 5.762045 ACAAAGACTCGATGAAACCAAATG 58.238 37.500 0.00 0.00 0.00 2.32
522 523 5.530915 ACAAAGACTCGATGAAACCAAATGA 59.469 36.000 0.00 0.00 0.00 2.57
523 524 5.869753 AAGACTCGATGAAACCAAATGAG 57.130 39.130 0.00 0.00 0.00 2.90
524 525 5.152623 AGACTCGATGAAACCAAATGAGA 57.847 39.130 0.00 0.00 0.00 3.27
525 526 5.551233 AGACTCGATGAAACCAAATGAGAA 58.449 37.500 0.00 0.00 0.00 2.87
526 527 6.176183 AGACTCGATGAAACCAAATGAGAAT 58.824 36.000 0.00 0.00 0.00 2.40
527 528 6.314896 AGACTCGATGAAACCAAATGAGAATC 59.685 38.462 0.00 0.00 0.00 2.52
567 568 8.985315 ACAAATTCTTAAGCCATCAGATATCA 57.015 30.769 5.32 0.00 0.00 2.15
568 569 8.844244 ACAAATTCTTAAGCCATCAGATATCAC 58.156 33.333 5.32 0.00 0.00 3.06
569 570 7.664082 AATTCTTAAGCCATCAGATATCACG 57.336 36.000 5.32 0.00 0.00 4.35
570 571 5.791336 TCTTAAGCCATCAGATATCACGT 57.209 39.130 5.32 0.00 0.00 4.49
571 572 6.894339 TCTTAAGCCATCAGATATCACGTA 57.106 37.500 5.32 0.00 0.00 3.57
572 573 6.678878 TCTTAAGCCATCAGATATCACGTAC 58.321 40.000 5.32 0.00 0.00 3.67
573 574 4.937201 AAGCCATCAGATATCACGTACA 57.063 40.909 5.32 0.00 0.00 2.90
574 575 5.474578 AAGCCATCAGATATCACGTACAT 57.525 39.130 5.32 0.00 0.00 2.29
575 576 4.814147 AGCCATCAGATATCACGTACATG 58.186 43.478 5.32 0.00 0.00 3.21
576 577 3.369147 GCCATCAGATATCACGTACATGC 59.631 47.826 5.32 0.00 0.00 4.06
577 578 3.928992 CCATCAGATATCACGTACATGCC 59.071 47.826 5.32 0.00 0.00 4.40
578 579 4.322273 CCATCAGATATCACGTACATGCCT 60.322 45.833 5.32 0.00 0.00 4.75
579 580 4.505313 TCAGATATCACGTACATGCCTC 57.495 45.455 5.32 0.00 0.00 4.70
580 581 3.058224 TCAGATATCACGTACATGCCTCG 60.058 47.826 5.32 0.00 0.00 4.63
581 582 2.229062 AGATATCACGTACATGCCTCGG 59.771 50.000 5.32 0.00 0.00 4.63
582 583 0.031585 TATCACGTACATGCCTCGGC 59.968 55.000 0.00 0.00 42.35 5.54
592 593 2.805546 GCCTCGGCAGTACGATGA 59.194 61.111 2.41 0.00 42.62 2.92
593 594 1.141019 GCCTCGGCAGTACGATGAA 59.859 57.895 2.41 0.00 42.62 2.57
594 595 0.249489 GCCTCGGCAGTACGATGAAT 60.249 55.000 2.41 0.00 42.62 2.57
595 596 1.000607 GCCTCGGCAGTACGATGAATA 60.001 52.381 2.41 0.00 42.62 1.75
596 597 2.545113 GCCTCGGCAGTACGATGAATAA 60.545 50.000 2.41 0.00 42.62 1.40
597 598 3.309388 CCTCGGCAGTACGATGAATAAG 58.691 50.000 0.00 0.00 42.62 1.73
598 599 2.726760 CTCGGCAGTACGATGAATAAGC 59.273 50.000 0.00 0.00 42.62 3.09
605 606 6.072618 GGCAGTACGATGAATAAGCTAGTAGA 60.073 42.308 0.00 0.00 0.00 2.59
689 690 3.673484 CGTGCAGGCCAGGGTTTG 61.673 66.667 5.01 0.00 0.00 2.93
713 714 0.981183 AAGTATCCTTGCACCGGTGA 59.019 50.000 38.30 19.89 0.00 4.02
716 717 0.907704 TATCCTTGCACCGGTGACCT 60.908 55.000 38.30 16.74 0.00 3.85
737 744 4.021544 CCTCAGCTACAGGATAGACATTCC 60.022 50.000 5.08 0.00 31.91 3.01
738 745 4.809193 TCAGCTACAGGATAGACATTCCT 58.191 43.478 0.00 0.00 44.60 3.36
788 795 1.086067 CACGCATCGGCTCTTCATGT 61.086 55.000 0.00 0.00 38.10 3.21
889 3553 5.359292 GTCTATATATTACCTCCGGACACCC 59.641 48.000 0.00 0.00 0.00 4.61
910 3574 1.803943 GACCAAACGCAACACCACA 59.196 52.632 0.00 0.00 0.00 4.17
911 3575 0.248458 GACCAAACGCAACACCACAG 60.248 55.000 0.00 0.00 0.00 3.66
912 3576 1.588667 CCAAACGCAACACCACAGC 60.589 57.895 0.00 0.00 0.00 4.40
913 3577 1.138459 CAAACGCAACACCACAGCA 59.862 52.632 0.00 0.00 0.00 4.41
916 3580 3.572539 CGCAACACCACAGCACGT 61.573 61.111 0.00 0.00 0.00 4.49
947 3611 1.203441 TGATCAAGCTGCCCTGAGGT 61.203 55.000 0.00 0.00 34.57 3.85
948 3612 0.463474 GATCAAGCTGCCCTGAGGTC 60.463 60.000 0.00 0.00 34.57 3.85
949 3613 1.203441 ATCAAGCTGCCCTGAGGTCA 61.203 55.000 0.00 0.00 34.57 4.02
1015 3685 0.459585 ACGCAGGCACGTATACCTTG 60.460 55.000 3.64 0.00 46.19 3.61
1016 3686 0.459585 CGCAGGCACGTATACCTTGT 60.460 55.000 1.38 0.00 32.56 3.16
1020 3691 3.677976 GCAGGCACGTATACCTTGTTACT 60.678 47.826 1.38 0.00 32.56 2.24
1031 3702 4.145365 ACCTTGTTACTTACACACAGCA 57.855 40.909 0.00 0.00 36.21 4.41
1042 3713 0.234106 CACACAGCAAGAAGTGAGCG 59.766 55.000 0.00 0.00 39.03 5.03
1182 3853 1.515304 GCTTCGACGAGGACTCTGC 60.515 63.158 11.60 0.00 0.00 4.26
1197 3871 4.704103 TGCGGAGGAGGAGGTGCT 62.704 66.667 0.00 0.00 0.00 4.40
1227 3901 2.668212 CTTCGAGTTTGGCGCCCA 60.668 61.111 26.77 11.12 0.00 5.36
1229 3903 3.758973 TTCGAGTTTGGCGCCCACA 62.759 57.895 26.77 4.67 30.78 4.17
1444 4118 1.204113 CCAGGCTCAACTTCCCCTCT 61.204 60.000 0.00 0.00 0.00 3.69
1512 4189 2.423577 GTGCCTTGTTATTGACCTCGT 58.576 47.619 0.00 0.00 0.00 4.18
1561 4238 4.241555 GATGCCGGCGGGATGAGT 62.242 66.667 37.74 15.36 32.75 3.41
1635 4312 0.529773 GACGAGGTCATGGCGCAATA 60.530 55.000 10.83 0.00 32.09 1.90
1680 4357 4.773117 GTCCGTCGTCGACCTGGC 62.773 72.222 19.29 8.93 39.71 4.85
1823 4500 1.306148 CTCGTACGAGTGGCTGGATA 58.694 55.000 32.24 0.95 37.47 2.59
1953 4642 9.856488 GAGTAGTACTGTATCATCAAAGACAAA 57.144 33.333 7.76 0.00 0.00 2.83
1960 4649 9.167311 ACTGTATCATCAAAGACAAAAGGATAC 57.833 33.333 0.00 0.00 37.46 2.24
1987 4677 0.179045 ACTCGCAAGTGTTTGAGGCT 60.179 50.000 0.00 0.00 42.12 4.58
2013 4732 2.674852 CCACACCTTGTTGATGATCTCG 59.325 50.000 0.00 0.00 0.00 4.04
2030 4749 7.149569 TGATCTCGCTTTCATCAAAGAAATT 57.850 32.000 0.00 0.00 41.60 1.82
2062 4787 7.138736 CCTTGTTGATGATGTAAAAACTTCGT 58.861 34.615 0.00 0.00 0.00 3.85
2082 4807 5.601662 TCGTTGTTTTGGGATTGCAAAATA 58.398 33.333 1.71 0.00 33.61 1.40
2085 4810 6.368516 CGTTGTTTTGGGATTGCAAAATATCT 59.631 34.615 1.71 0.00 33.61 1.98
2092 4817 5.716228 TGGGATTGCAAAATATCTGTCAACT 59.284 36.000 1.71 0.00 0.00 3.16
2094 4819 6.127647 GGGATTGCAAAATATCTGTCAACTGA 60.128 38.462 1.71 0.00 0.00 3.41
2097 4822 6.486253 TGCAAAATATCTGTCAACTGAGAC 57.514 37.500 0.00 0.00 38.99 3.36
2098 4823 5.997129 TGCAAAATATCTGTCAACTGAGACA 59.003 36.000 7.30 7.30 45.64 3.41
2099 4824 6.656270 TGCAAAATATCTGTCAACTGAGACAT 59.344 34.615 7.82 0.00 46.51 3.06
2100 4825 7.823799 TGCAAAATATCTGTCAACTGAGACATA 59.176 33.333 7.82 2.98 46.51 2.29
2101 4826 8.333908 GCAAAATATCTGTCAACTGAGACATAG 58.666 37.037 7.82 0.22 46.51 2.23
2102 4827 8.333908 CAAAATATCTGTCAACTGAGACATAGC 58.666 37.037 7.82 0.00 46.51 2.97
2103 4828 6.721704 ATATCTGTCAACTGAGACATAGCA 57.278 37.500 7.82 0.00 46.51 3.49
2104 4829 4.871933 TCTGTCAACTGAGACATAGCAA 57.128 40.909 7.82 0.00 46.51 3.91
2105 4830 5.213891 TCTGTCAACTGAGACATAGCAAA 57.786 39.130 7.82 0.00 46.51 3.68
2106 4831 5.233225 TCTGTCAACTGAGACATAGCAAAG 58.767 41.667 7.82 0.00 46.51 2.77
2119 4844 8.430801 AGACATAGCAAAGTCTCAATCAATAC 57.569 34.615 0.00 0.00 40.96 1.89
2157 4882 7.509141 TCTTACATGAAGATCTGTGCAAAAA 57.491 32.000 0.00 0.00 39.36 1.94
2161 4886 7.647907 ACATGAAGATCTGTGCAAAAATTTC 57.352 32.000 0.00 0.00 0.00 2.17
2165 4890 8.356533 TGAAGATCTGTGCAAAAATTTCTTTC 57.643 30.769 0.00 0.00 0.00 2.62
2166 4891 8.199449 TGAAGATCTGTGCAAAAATTTCTTTCT 58.801 29.630 0.00 0.00 0.00 2.52
2168 4893 8.585189 AGATCTGTGCAAAAATTTCTTTCTTC 57.415 30.769 0.00 0.00 0.00 2.87
2173 4898 9.481800 CTGTGCAAAAATTTCTTTCTTCTTTTC 57.518 29.630 0.00 0.00 0.00 2.29
2174 4899 9.218440 TGTGCAAAAATTTCTTTCTTCTTTTCT 57.782 25.926 0.00 0.00 0.00 2.52
2201 4949 6.466308 TGTTATGTCACTTGACTGAAATCG 57.534 37.500 10.63 0.00 44.99 3.34
2213 4961 9.146984 ACTTGACTGAAATCGTAATAAAATCGA 57.853 29.630 0.00 0.00 37.96 3.59
2224 4990 5.694910 CGTAATAAAATCGACATACCTGCCT 59.305 40.000 0.00 0.00 0.00 4.75
2227 4993 2.604046 AATCGACATACCTGCCTGTC 57.396 50.000 0.00 0.00 38.69 3.51
2250 5016 5.104151 TCTGTGATTATGGCATCCCTTGTAA 60.104 40.000 1.65 0.00 0.00 2.41
2269 5035 5.865085 TGTAAGCACTTGATACTCCTTGTT 58.135 37.500 0.00 0.00 0.00 2.83
2278 5044 5.643379 TGATACTCCTTGTTTGCATTTCC 57.357 39.130 0.00 0.00 0.00 3.13
2308 5074 7.989826 ACTTTTATATCAACAATGTCTGCTCC 58.010 34.615 0.00 0.00 0.00 4.70
2310 5076 9.330063 CTTTTATATCAACAATGTCTGCTCCTA 57.670 33.333 0.00 0.00 0.00 2.94
2311 5077 9.851686 TTTTATATCAACAATGTCTGCTCCTAT 57.148 29.630 0.00 0.00 0.00 2.57
2315 5081 7.976135 ATCAACAATGTCTGCTCCTATATTC 57.024 36.000 0.00 0.00 0.00 1.75
2316 5082 5.985530 TCAACAATGTCTGCTCCTATATTCG 59.014 40.000 0.00 0.00 0.00 3.34
2317 5083 5.791336 ACAATGTCTGCTCCTATATTCGA 57.209 39.130 0.00 0.00 0.00 3.71
2318 5084 6.161855 ACAATGTCTGCTCCTATATTCGAA 57.838 37.500 0.00 0.00 0.00 3.71
2319 5085 6.582636 ACAATGTCTGCTCCTATATTCGAAA 58.417 36.000 0.00 0.00 0.00 3.46
2320 5086 7.047891 ACAATGTCTGCTCCTATATTCGAAAA 58.952 34.615 0.00 0.00 0.00 2.29
2321 5087 7.552687 ACAATGTCTGCTCCTATATTCGAAAAA 59.447 33.333 0.00 0.00 0.00 1.94
2431 5205 7.496529 TTTATCTTGGACATTTCGGATGATC 57.503 36.000 6.69 0.00 0.00 2.92
2444 5218 8.470002 CATTTCGGATGATCCACTAGATACATA 58.530 37.037 12.67 0.00 35.91 2.29
2526 5300 3.651803 AACAGTCTAGTCTCTGTGCAC 57.348 47.619 10.75 10.75 42.95 4.57
2551 5325 3.576982 GTGTCATCCCTGGATCGGTAATA 59.423 47.826 0.00 0.00 31.62 0.98
2584 5358 9.214957 CACACAGTACTTGAGGATTTATAACAA 57.785 33.333 10.71 0.00 0.00 2.83
2592 5366 9.442047 ACTTGAGGATTTATAACAAAGTCTCAG 57.558 33.333 0.00 0.00 0.00 3.35
2632 5407 6.927294 ACGAATGTCTCAAAAGAGAACTTT 57.073 33.333 0.00 0.00 46.64 2.66
2699 5474 3.615155 AGGCTTGGAAGATAAAGTGAGC 58.385 45.455 0.00 0.00 0.00 4.26
2745 5522 4.021456 TGAGTGAATGACAACGACCTATGT 60.021 41.667 0.00 0.00 0.00 2.29
2766 5546 3.429207 GTCACCTTACTCGTCTGAAAAGC 59.571 47.826 0.00 0.00 0.00 3.51
2770 5550 3.555168 CCTTACTCGTCTGAAAAGCCTGT 60.555 47.826 0.00 0.00 0.00 4.00
2870 5652 9.783081 ACAGATAAATGATATCACTACATGCAA 57.217 29.630 7.78 0.00 0.00 4.08
3072 5859 9.553064 AGATCAACATGATAATCCAAGAACTAC 57.447 33.333 0.00 0.00 37.20 2.73
3096 5885 2.213499 CTCAAGATGTCCATAACGGGC 58.787 52.381 0.00 0.00 41.21 6.13
3154 5943 2.777114 AGGTTTGCAAACTTTTCCCCAT 59.223 40.909 34.39 7.77 38.89 4.00
3162 5951 4.082190 GCAAACTTTTCCCCATAAGACTCC 60.082 45.833 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107410 ACCGCAACCACAACAGAAGA 60.107 50.000 0.00 0.00 0.00 2.87
1 2 0.738389 AACCGCAACCACAACAGAAG 59.262 50.000 0.00 0.00 0.00 2.85
2 3 0.453793 CAACCGCAACCACAACAGAA 59.546 50.000 0.00 0.00 0.00 3.02
3 4 1.999071 GCAACCGCAACCACAACAGA 61.999 55.000 0.00 0.00 38.36 3.41
4 5 1.588667 GCAACCGCAACCACAACAG 60.589 57.895 0.00 0.00 38.36 3.16
5 6 2.492090 GCAACCGCAACCACAACA 59.508 55.556 0.00 0.00 38.36 3.33
6 7 2.653766 CGCAACCGCAACCACAAC 60.654 61.111 0.00 0.00 38.40 3.32
7 8 3.893763 CCGCAACCGCAACCACAA 61.894 61.111 0.00 0.00 38.40 3.33
9 10 4.622456 CACCGCAACCGCAACCAC 62.622 66.667 0.00 0.00 38.40 4.16
13 14 4.627801 TAGCCACCGCAACCGCAA 62.628 61.111 0.00 0.00 38.40 4.85
17 18 3.562732 AACCCTAGCCACCGCAACC 62.563 63.158 0.00 0.00 37.52 3.77
18 19 2.033602 AACCCTAGCCACCGCAAC 59.966 61.111 0.00 0.00 37.52 4.17
19 20 2.180159 GAGAACCCTAGCCACCGCAA 62.180 60.000 0.00 0.00 37.52 4.85
20 21 2.606519 AGAACCCTAGCCACCGCA 60.607 61.111 0.00 0.00 37.52 5.69
21 22 1.900545 AAGAGAACCCTAGCCACCGC 61.901 60.000 0.00 0.00 0.00 5.68
22 23 0.613777 AAAGAGAACCCTAGCCACCG 59.386 55.000 0.00 0.00 0.00 4.94
23 24 2.881111 AAAAGAGAACCCTAGCCACC 57.119 50.000 0.00 0.00 0.00 4.61
24 25 3.082548 GGAAAAAGAGAACCCTAGCCAC 58.917 50.000 0.00 0.00 0.00 5.01
25 26 2.041216 GGGAAAAAGAGAACCCTAGCCA 59.959 50.000 0.00 0.00 39.28 4.75
26 27 2.724454 GGGAAAAAGAGAACCCTAGCC 58.276 52.381 0.00 0.00 39.28 3.93
31 32 2.620886 GGCCTAGGGAAAAAGAGAACCC 60.621 54.545 11.72 0.00 42.36 4.11
32 33 2.309162 AGGCCTAGGGAAAAAGAGAACC 59.691 50.000 1.29 0.00 0.00 3.62
33 34 3.264706 AGAGGCCTAGGGAAAAAGAGAAC 59.735 47.826 4.42 0.00 0.00 3.01
34 35 3.532102 AGAGGCCTAGGGAAAAAGAGAA 58.468 45.455 4.42 0.00 0.00 2.87
35 36 3.207044 AGAGGCCTAGGGAAAAAGAGA 57.793 47.619 4.42 0.00 0.00 3.10
36 37 3.264450 TGAAGAGGCCTAGGGAAAAAGAG 59.736 47.826 4.42 0.00 0.00 2.85
37 38 3.009143 GTGAAGAGGCCTAGGGAAAAAGA 59.991 47.826 4.42 0.00 0.00 2.52
38 39 3.348119 GTGAAGAGGCCTAGGGAAAAAG 58.652 50.000 4.42 0.00 0.00 2.27
39 40 2.290071 CGTGAAGAGGCCTAGGGAAAAA 60.290 50.000 4.42 0.00 0.00 1.94
40 41 1.278127 CGTGAAGAGGCCTAGGGAAAA 59.722 52.381 4.42 0.00 0.00 2.29
41 42 0.902531 CGTGAAGAGGCCTAGGGAAA 59.097 55.000 4.42 0.00 0.00 3.13
42 43 0.040646 TCGTGAAGAGGCCTAGGGAA 59.959 55.000 4.42 0.00 0.00 3.97
43 44 0.040646 TTCGTGAAGAGGCCTAGGGA 59.959 55.000 4.42 0.00 0.00 4.20
44 45 0.902531 TTTCGTGAAGAGGCCTAGGG 59.097 55.000 4.42 0.00 0.00 3.53
45 46 1.550976 ACTTTCGTGAAGAGGCCTAGG 59.449 52.381 4.42 3.67 38.77 3.02
46 47 2.028930 ACACTTTCGTGAAGAGGCCTAG 60.029 50.000 4.42 0.00 43.97 3.02
47 48 1.968493 ACACTTTCGTGAAGAGGCCTA 59.032 47.619 4.42 0.00 43.97 3.93
48 49 0.759346 ACACTTTCGTGAAGAGGCCT 59.241 50.000 3.86 3.86 43.97 5.19
49 50 1.149148 GACACTTTCGTGAAGAGGCC 58.851 55.000 0.00 0.00 43.97 5.19
50 51 2.156343 AGACACTTTCGTGAAGAGGC 57.844 50.000 8.00 3.16 43.97 4.70
51 52 3.458189 ACAAGACACTTTCGTGAAGAGG 58.542 45.455 8.00 3.46 43.97 3.69
52 53 7.306213 TCTATACAAGACACTTTCGTGAAGAG 58.694 38.462 8.00 3.54 43.97 2.85
53 54 7.210718 TCTATACAAGACACTTTCGTGAAGA 57.789 36.000 8.00 0.00 43.97 2.87
67 68 7.914427 ATAGTTCCACCATGTCTATACAAGA 57.086 36.000 0.00 0.00 39.58 3.02
68 69 7.442364 CCAATAGTTCCACCATGTCTATACAAG 59.558 40.741 0.00 0.00 39.58 3.16
69 70 7.279615 CCAATAGTTCCACCATGTCTATACAA 58.720 38.462 0.00 0.00 39.58 2.41
70 71 6.687901 GCCAATAGTTCCACCATGTCTATACA 60.688 42.308 0.00 0.00 40.69 2.29
71 72 5.701290 GCCAATAGTTCCACCATGTCTATAC 59.299 44.000 0.00 0.00 0.00 1.47
72 73 5.368230 TGCCAATAGTTCCACCATGTCTATA 59.632 40.000 0.00 0.00 0.00 1.31
73 74 4.165950 TGCCAATAGTTCCACCATGTCTAT 59.834 41.667 0.00 0.00 0.00 1.98
74 75 3.521531 TGCCAATAGTTCCACCATGTCTA 59.478 43.478 0.00 0.00 0.00 2.59
75 76 2.308570 TGCCAATAGTTCCACCATGTCT 59.691 45.455 0.00 0.00 0.00 3.41
76 77 2.423538 GTGCCAATAGTTCCACCATGTC 59.576 50.000 0.00 0.00 0.00 3.06
77 78 2.446435 GTGCCAATAGTTCCACCATGT 58.554 47.619 0.00 0.00 0.00 3.21
78 79 1.750778 GGTGCCAATAGTTCCACCATG 59.249 52.381 3.94 0.00 45.41 3.66
79 80 2.143876 GGTGCCAATAGTTCCACCAT 57.856 50.000 3.94 0.00 45.41 3.55
80 81 3.662290 GGTGCCAATAGTTCCACCA 57.338 52.632 3.94 0.00 45.41 4.17
81 82 1.004277 TGAGGTGCCAATAGTTCCACC 59.996 52.381 0.57 0.57 46.22 4.61
82 83 2.489938 TGAGGTGCCAATAGTTCCAC 57.510 50.000 0.00 0.00 0.00 4.02
83 84 3.431626 CGTATGAGGTGCCAATAGTTCCA 60.432 47.826 0.00 0.00 0.00 3.53
84 85 3.131396 CGTATGAGGTGCCAATAGTTCC 58.869 50.000 0.00 0.00 0.00 3.62
85 86 4.051922 CTCGTATGAGGTGCCAATAGTTC 58.948 47.826 3.83 0.00 38.65 3.01
86 87 4.060038 CTCGTATGAGGTGCCAATAGTT 57.940 45.455 3.83 0.00 38.65 2.24
87 88 3.735237 CTCGTATGAGGTGCCAATAGT 57.265 47.619 3.83 0.00 38.65 2.12
99 100 0.457853 GACCGCAAGCACTCGTATGA 60.458 55.000 0.00 0.00 0.00 2.15
100 101 1.742900 CGACCGCAAGCACTCGTATG 61.743 60.000 0.00 0.00 0.00 2.39
101 102 1.516386 CGACCGCAAGCACTCGTAT 60.516 57.895 0.00 0.00 0.00 3.06
102 103 1.576451 TACGACCGCAAGCACTCGTA 61.576 55.000 13.89 13.89 39.85 3.43
103 104 2.911484 TACGACCGCAAGCACTCGT 61.911 57.895 15.46 15.46 41.36 4.18
104 105 2.126618 TACGACCGCAAGCACTCG 60.127 61.111 6.77 6.77 34.62 4.18
105 106 2.434134 CGTACGACCGCAAGCACTC 61.434 63.158 10.44 0.00 0.00 3.51
106 107 2.410638 TTCGTACGACCGCAAGCACT 62.411 55.000 19.36 0.00 0.00 4.40
107 108 1.550659 TTTCGTACGACCGCAAGCAC 61.551 55.000 19.36 0.00 0.00 4.40
108 109 1.279527 CTTTCGTACGACCGCAAGCA 61.280 55.000 19.36 0.00 0.00 3.91
109 110 1.414897 CTTTCGTACGACCGCAAGC 59.585 57.895 19.36 0.00 0.00 4.01
110 111 0.665369 ACCTTTCGTACGACCGCAAG 60.665 55.000 19.36 17.80 32.11 4.01
111 112 0.664166 GACCTTTCGTACGACCGCAA 60.664 55.000 19.36 8.74 0.00 4.85
112 113 1.081242 GACCTTTCGTACGACCGCA 60.081 57.895 19.36 0.00 0.00 5.69
113 114 2.148365 CGACCTTTCGTACGACCGC 61.148 63.158 19.36 5.17 40.61 5.68
114 115 4.047030 CGACCTTTCGTACGACCG 57.953 61.111 19.36 11.58 40.61 4.79
123 124 6.903883 TCAGAGCAAAATATACGACCTTTC 57.096 37.500 0.00 0.00 0.00 2.62
124 125 6.238484 GCATCAGAGCAAAATATACGACCTTT 60.238 38.462 0.00 0.00 0.00 3.11
125 126 5.237344 GCATCAGAGCAAAATATACGACCTT 59.763 40.000 0.00 0.00 0.00 3.50
126 127 4.752101 GCATCAGAGCAAAATATACGACCT 59.248 41.667 0.00 0.00 0.00 3.85
127 128 4.511454 TGCATCAGAGCAAAATATACGACC 59.489 41.667 0.00 0.00 42.46 4.79
128 129 5.657470 TGCATCAGAGCAAAATATACGAC 57.343 39.130 0.00 0.00 42.46 4.34
139 140 0.538584 CCACTAGGTGCATCAGAGCA 59.461 55.000 0.00 0.00 43.35 4.26
140 141 0.813210 GCCACTAGGTGCATCAGAGC 60.813 60.000 0.00 0.71 37.19 4.09
141 142 0.829333 AGCCACTAGGTGCATCAGAG 59.171 55.000 0.00 0.00 37.19 3.35
142 143 1.065926 CAAGCCACTAGGTGCATCAGA 60.066 52.381 0.00 0.00 37.19 3.27
143 144 1.376543 CAAGCCACTAGGTGCATCAG 58.623 55.000 0.00 0.00 37.19 2.90
144 145 0.035152 CCAAGCCACTAGGTGCATCA 60.035 55.000 0.00 0.00 37.19 3.07
145 146 1.379642 GCCAAGCCACTAGGTGCATC 61.380 60.000 8.26 0.00 37.19 3.91
146 147 1.379044 GCCAAGCCACTAGGTGCAT 60.379 57.895 8.26 0.00 37.19 3.96
147 148 2.034066 GCCAAGCCACTAGGTGCA 59.966 61.111 8.26 0.00 37.19 4.57
148 149 1.746991 GAGCCAAGCCACTAGGTGC 60.747 63.158 0.00 0.00 37.19 5.01
149 150 0.107945 GAGAGCCAAGCCACTAGGTG 60.108 60.000 0.00 0.00 37.19 4.00
150 151 1.268283 GGAGAGCCAAGCCACTAGGT 61.268 60.000 0.00 0.00 37.19 3.08
151 152 1.267574 TGGAGAGCCAAGCCACTAGG 61.268 60.000 0.00 0.00 42.49 3.02
152 153 2.290847 TGGAGAGCCAAGCCACTAG 58.709 57.895 0.00 0.00 42.49 2.57
153 154 4.559148 TGGAGAGCCAAGCCACTA 57.441 55.556 0.00 0.00 42.49 2.74
162 163 2.158696 AGCAACTTCCATATGGAGAGCC 60.159 50.000 23.35 12.54 46.36 4.70
163 164 3.137533 GAGCAACTTCCATATGGAGAGC 58.862 50.000 23.35 22.60 46.36 4.09
164 165 3.135348 TGGAGCAACTTCCATATGGAGAG 59.865 47.826 23.35 22.70 46.36 3.20
165 166 3.114606 TGGAGCAACTTCCATATGGAGA 58.885 45.455 23.35 13.89 46.36 3.71
166 167 3.565764 TGGAGCAACTTCCATATGGAG 57.434 47.619 23.35 18.89 46.36 3.86
174 175 3.569701 TCAAGTCAAATGGAGCAACTTCC 59.430 43.478 0.00 0.00 37.77 3.46
175 176 4.836125 TCAAGTCAAATGGAGCAACTTC 57.164 40.909 0.00 0.00 0.00 3.01
176 177 5.796424 AATCAAGTCAAATGGAGCAACTT 57.204 34.783 0.00 0.00 0.00 2.66
177 178 5.535333 CAAATCAAGTCAAATGGAGCAACT 58.465 37.500 0.00 0.00 0.00 3.16
178 179 4.151157 GCAAATCAAGTCAAATGGAGCAAC 59.849 41.667 0.00 0.00 0.00 4.17
179 180 4.202233 TGCAAATCAAGTCAAATGGAGCAA 60.202 37.500 0.00 0.00 0.00 3.91
180 181 3.321396 TGCAAATCAAGTCAAATGGAGCA 59.679 39.130 0.00 0.00 0.00 4.26
181 182 3.916761 TGCAAATCAAGTCAAATGGAGC 58.083 40.909 0.00 0.00 0.00 4.70
182 183 5.130292 ACTGCAAATCAAGTCAAATGGAG 57.870 39.130 0.00 0.00 33.21 3.86
183 184 5.769662 ACTACTGCAAATCAAGTCAAATGGA 59.230 36.000 0.00 0.00 0.00 3.41
184 185 6.017400 ACTACTGCAAATCAAGTCAAATGG 57.983 37.500 0.00 0.00 0.00 3.16
185 186 6.072286 AGGACTACTGCAAATCAAGTCAAATG 60.072 38.462 12.68 0.00 35.32 2.32
186 187 6.006449 AGGACTACTGCAAATCAAGTCAAAT 58.994 36.000 12.68 0.66 35.32 2.32
187 188 5.376625 AGGACTACTGCAAATCAAGTCAAA 58.623 37.500 12.68 0.00 35.32 2.69
188 189 4.973168 AGGACTACTGCAAATCAAGTCAA 58.027 39.130 12.68 0.00 35.32 3.18
189 190 4.284490 AGAGGACTACTGCAAATCAAGTCA 59.716 41.667 12.68 0.00 35.32 3.41
190 191 4.826556 AGAGGACTACTGCAAATCAAGTC 58.173 43.478 0.00 0.00 33.71 3.01
191 192 4.899352 AGAGGACTACTGCAAATCAAGT 57.101 40.909 0.00 0.00 0.00 3.16
192 193 5.702670 TCAAAGAGGACTACTGCAAATCAAG 59.297 40.000 0.00 0.00 0.00 3.02
193 194 5.620206 TCAAAGAGGACTACTGCAAATCAA 58.380 37.500 0.00 0.00 0.00 2.57
194 195 5.227569 TCAAAGAGGACTACTGCAAATCA 57.772 39.130 0.00 0.00 0.00 2.57
195 196 6.749923 AATCAAAGAGGACTACTGCAAATC 57.250 37.500 0.00 0.00 0.00 2.17
196 197 6.151817 GGAAATCAAAGAGGACTACTGCAAAT 59.848 38.462 0.00 0.00 0.00 2.32
197 198 5.473504 GGAAATCAAAGAGGACTACTGCAAA 59.526 40.000 0.00 0.00 0.00 3.68
198 199 5.003804 GGAAATCAAAGAGGACTACTGCAA 58.996 41.667 0.00 0.00 0.00 4.08
199 200 4.287067 AGGAAATCAAAGAGGACTACTGCA 59.713 41.667 0.00 0.00 0.00 4.41
200 201 4.837972 AGGAAATCAAAGAGGACTACTGC 58.162 43.478 0.00 0.00 0.00 4.40
201 202 5.877564 GGAAGGAAATCAAAGAGGACTACTG 59.122 44.000 0.00 0.00 0.00 2.74
202 203 5.548056 TGGAAGGAAATCAAAGAGGACTACT 59.452 40.000 0.00 0.00 0.00 2.57
203 204 5.805728 TGGAAGGAAATCAAAGAGGACTAC 58.194 41.667 0.00 0.00 0.00 2.73
204 205 6.642733 ATGGAAGGAAATCAAAGAGGACTA 57.357 37.500 0.00 0.00 0.00 2.59
205 206 5.527026 ATGGAAGGAAATCAAAGAGGACT 57.473 39.130 0.00 0.00 0.00 3.85
206 207 9.007901 CATATATGGAAGGAAATCAAAGAGGAC 57.992 37.037 4.68 0.00 0.00 3.85
207 208 8.948362 TCATATATGGAAGGAAATCAAAGAGGA 58.052 33.333 12.78 0.00 0.00 3.71
208 209 9.007901 GTCATATATGGAAGGAAATCAAAGAGG 57.992 37.037 12.78 0.00 0.00 3.69
209 210 9.565090 TGTCATATATGGAAGGAAATCAAAGAG 57.435 33.333 12.78 0.00 0.00 2.85
210 211 9.919416 TTGTCATATATGGAAGGAAATCAAAGA 57.081 29.630 12.78 0.00 0.00 2.52
214 215 9.300681 GGAATTGTCATATATGGAAGGAAATCA 57.699 33.333 12.78 0.00 0.00 2.57
215 216 9.525826 AGGAATTGTCATATATGGAAGGAAATC 57.474 33.333 12.78 2.52 0.00 2.17
216 217 9.305555 CAGGAATTGTCATATATGGAAGGAAAT 57.694 33.333 12.78 2.34 0.00 2.17
217 218 8.281531 ACAGGAATTGTCATATATGGAAGGAAA 58.718 33.333 12.78 0.26 33.87 3.13
218 219 7.815383 ACAGGAATTGTCATATATGGAAGGAA 58.185 34.615 12.78 0.21 33.87 3.36
219 220 7.392766 ACAGGAATTGTCATATATGGAAGGA 57.607 36.000 12.78 0.00 33.87 3.36
267 268 9.362151 TCTAAAGCTAATCCTTCCAAAGAAAAA 57.638 29.630 0.00 0.00 0.00 1.94
268 269 8.934023 TCTAAAGCTAATCCTTCCAAAGAAAA 57.066 30.769 0.00 0.00 0.00 2.29
269 270 8.934023 TTCTAAAGCTAATCCTTCCAAAGAAA 57.066 30.769 0.00 0.00 0.00 2.52
270 271 8.934023 TTTCTAAAGCTAATCCTTCCAAAGAA 57.066 30.769 0.00 0.00 0.00 2.52
273 274 9.408648 CCTATTTCTAAAGCTAATCCTTCCAAA 57.591 33.333 0.00 0.00 0.00 3.28
274 275 7.998964 CCCTATTTCTAAAGCTAATCCTTCCAA 59.001 37.037 0.00 0.00 0.00 3.53
275 276 7.128883 ACCCTATTTCTAAAGCTAATCCTTCCA 59.871 37.037 0.00 0.00 0.00 3.53
276 277 7.519057 ACCCTATTTCTAAAGCTAATCCTTCC 58.481 38.462 0.00 0.00 0.00 3.46
277 278 8.433599 AGACCCTATTTCTAAAGCTAATCCTTC 58.566 37.037 0.00 0.00 0.00 3.46
278 279 8.214364 CAGACCCTATTTCTAAAGCTAATCCTT 58.786 37.037 0.00 0.00 0.00 3.36
279 280 7.348537 ACAGACCCTATTTCTAAAGCTAATCCT 59.651 37.037 0.00 0.00 0.00 3.24
280 281 7.510407 ACAGACCCTATTTCTAAAGCTAATCC 58.490 38.462 0.00 0.00 0.00 3.01
281 282 8.425703 AGACAGACCCTATTTCTAAAGCTAATC 58.574 37.037 0.00 0.00 0.00 1.75
282 283 8.325477 AGACAGACCCTATTTCTAAAGCTAAT 57.675 34.615 0.00 0.00 0.00 1.73
283 284 7.735326 AGACAGACCCTATTTCTAAAGCTAA 57.265 36.000 0.00 0.00 0.00 3.09
284 285 7.506261 CCTAGACAGACCCTATTTCTAAAGCTA 59.494 40.741 0.00 0.00 0.00 3.32
285 286 6.325286 CCTAGACAGACCCTATTTCTAAAGCT 59.675 42.308 0.00 0.00 0.00 3.74
286 287 6.324254 TCCTAGACAGACCCTATTTCTAAAGC 59.676 42.308 0.00 0.00 0.00 3.51
287 288 7.342284 TGTCCTAGACAGACCCTATTTCTAAAG 59.658 40.741 0.00 0.00 37.67 1.85
288 289 7.123847 GTGTCCTAGACAGACCCTATTTCTAAA 59.876 40.741 0.00 0.00 43.57 1.85
289 290 6.606395 GTGTCCTAGACAGACCCTATTTCTAA 59.394 42.308 0.00 0.00 43.57 2.10
290 291 6.127793 GTGTCCTAGACAGACCCTATTTCTA 58.872 44.000 0.00 0.00 43.57 2.10
291 292 4.957327 GTGTCCTAGACAGACCCTATTTCT 59.043 45.833 0.00 0.00 43.57 2.52
292 293 4.710375 TGTGTCCTAGACAGACCCTATTTC 59.290 45.833 0.00 0.00 43.57 2.17
293 294 4.684724 TGTGTCCTAGACAGACCCTATTT 58.315 43.478 0.00 0.00 43.57 1.40
294 295 4.332683 TGTGTCCTAGACAGACCCTATT 57.667 45.455 0.00 0.00 43.57 1.73
295 296 4.169068 AGATGTGTCCTAGACAGACCCTAT 59.831 45.833 0.00 0.00 43.57 2.57
296 297 3.528078 AGATGTGTCCTAGACAGACCCTA 59.472 47.826 0.00 0.00 43.57 3.53
297 298 2.313342 AGATGTGTCCTAGACAGACCCT 59.687 50.000 0.00 0.00 43.57 4.34
298 299 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
299 300 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
300 301 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
327 328 9.987272 TGGAAATCTAGATGTGACATAACTATG 57.013 33.333 5.86 0.00 39.55 2.23
328 329 9.988815 GTGGAAATCTAGATGTGACATAACTAT 57.011 33.333 5.86 0.00 0.00 2.12
329 330 9.201989 AGTGGAAATCTAGATGTGACATAACTA 57.798 33.333 5.86 0.00 0.00 2.24
330 331 8.083828 AGTGGAAATCTAGATGTGACATAACT 57.916 34.615 5.86 0.00 0.00 2.24
331 332 8.723942 AAGTGGAAATCTAGATGTGACATAAC 57.276 34.615 5.86 0.00 0.00 1.89
332 333 9.166173 CAAAGTGGAAATCTAGATGTGACATAA 57.834 33.333 5.86 0.00 0.00 1.90
333 334 8.321353 ACAAAGTGGAAATCTAGATGTGACATA 58.679 33.333 5.86 0.00 0.00 2.29
334 335 7.170965 ACAAAGTGGAAATCTAGATGTGACAT 58.829 34.615 5.86 0.00 0.00 3.06
335 336 6.533730 ACAAAGTGGAAATCTAGATGTGACA 58.466 36.000 5.86 0.00 0.00 3.58
336 337 7.440523 AACAAAGTGGAAATCTAGATGTGAC 57.559 36.000 5.86 0.00 0.00 3.67
337 338 7.502226 ACAAACAAAGTGGAAATCTAGATGTGA 59.498 33.333 5.86 0.00 0.00 3.58
338 339 7.592533 CACAAACAAAGTGGAAATCTAGATGTG 59.407 37.037 5.86 2.62 33.43 3.21
339 340 7.651808 CACAAACAAAGTGGAAATCTAGATGT 58.348 34.615 5.86 0.00 33.43 3.06
398 399 9.518906 CAACAAATATATAATGCAGCAACAAGA 57.481 29.630 0.00 0.00 0.00 3.02
399 400 8.757789 CCAACAAATATATAATGCAGCAACAAG 58.242 33.333 0.00 0.00 0.00 3.16
400 401 8.473219 TCCAACAAATATATAATGCAGCAACAA 58.527 29.630 0.00 0.00 0.00 2.83
401 402 8.005192 TCCAACAAATATATAATGCAGCAACA 57.995 30.769 0.00 0.00 0.00 3.33
402 403 7.115378 GCTCCAACAAATATATAATGCAGCAAC 59.885 37.037 0.00 0.00 0.00 4.17
403 404 7.014518 AGCTCCAACAAATATATAATGCAGCAA 59.985 33.333 0.00 0.00 0.00 3.91
404 405 6.491062 AGCTCCAACAAATATATAATGCAGCA 59.509 34.615 0.00 0.00 0.00 4.41
405 406 6.917533 AGCTCCAACAAATATATAATGCAGC 58.082 36.000 0.00 0.00 0.00 5.25
407 408 9.791801 TCTAAGCTCCAACAAATATATAATGCA 57.208 29.630 0.00 0.00 0.00 3.96
416 417 9.494271 GATGTCATATCTAAGCTCCAACAAATA 57.506 33.333 0.00 0.00 0.00 1.40
417 418 7.446625 GGATGTCATATCTAAGCTCCAACAAAT 59.553 37.037 0.00 0.00 0.00 2.32
418 419 6.767902 GGATGTCATATCTAAGCTCCAACAAA 59.232 38.462 0.00 0.00 0.00 2.83
419 420 6.100279 AGGATGTCATATCTAAGCTCCAACAA 59.900 38.462 0.00 0.00 0.00 2.83
420 421 5.604231 AGGATGTCATATCTAAGCTCCAACA 59.396 40.000 0.00 0.00 0.00 3.33
421 422 6.107901 AGGATGTCATATCTAAGCTCCAAC 57.892 41.667 0.00 0.00 0.00 3.77
422 423 6.753913 AAGGATGTCATATCTAAGCTCCAA 57.246 37.500 0.00 0.00 0.00 3.53
423 424 7.855784 TTAAGGATGTCATATCTAAGCTCCA 57.144 36.000 0.00 0.00 0.00 3.86
424 425 9.561069 TTTTTAAGGATGTCATATCTAAGCTCC 57.439 33.333 0.00 0.00 0.00 4.70
451 452 9.467258 CAGTTTGTCTAATTCACATTTTGATGT 57.533 29.630 0.00 0.00 32.84 3.06
452 453 9.467258 ACAGTTTGTCTAATTCACATTTTGATG 57.533 29.630 0.00 0.00 32.84 3.07
482 483 8.557029 CGAGTCTTTGTTACTTCTTGGTTATTT 58.443 33.333 0.00 0.00 0.00 1.40
483 484 7.929785 TCGAGTCTTTGTTACTTCTTGGTTATT 59.070 33.333 0.00 0.00 0.00 1.40
484 485 7.439381 TCGAGTCTTTGTTACTTCTTGGTTAT 58.561 34.615 0.00 0.00 0.00 1.89
485 486 6.808829 TCGAGTCTTTGTTACTTCTTGGTTA 58.191 36.000 0.00 0.00 0.00 2.85
486 487 5.667466 TCGAGTCTTTGTTACTTCTTGGTT 58.333 37.500 0.00 0.00 0.00 3.67
487 488 5.272283 TCGAGTCTTTGTTACTTCTTGGT 57.728 39.130 0.00 0.00 0.00 3.67
488 489 5.926542 TCATCGAGTCTTTGTTACTTCTTGG 59.073 40.000 0.00 0.00 0.00 3.61
489 490 7.408132 TTCATCGAGTCTTTGTTACTTCTTG 57.592 36.000 0.00 0.00 0.00 3.02
490 491 7.041984 GGTTTCATCGAGTCTTTGTTACTTCTT 60.042 37.037 0.00 0.00 0.00 2.52
491 492 6.424207 GGTTTCATCGAGTCTTTGTTACTTCT 59.576 38.462 0.00 0.00 0.00 2.85
492 493 6.202188 TGGTTTCATCGAGTCTTTGTTACTTC 59.798 38.462 0.00 0.00 0.00 3.01
493 494 6.053005 TGGTTTCATCGAGTCTTTGTTACTT 58.947 36.000 0.00 0.00 0.00 2.24
494 495 5.607477 TGGTTTCATCGAGTCTTTGTTACT 58.393 37.500 0.00 0.00 0.00 2.24
495 496 5.917541 TGGTTTCATCGAGTCTTTGTTAC 57.082 39.130 0.00 0.00 0.00 2.50
496 497 6.928979 TTTGGTTTCATCGAGTCTTTGTTA 57.071 33.333 0.00 0.00 0.00 2.41
497 498 5.828299 TTTGGTTTCATCGAGTCTTTGTT 57.172 34.783 0.00 0.00 0.00 2.83
498 499 5.530915 TCATTTGGTTTCATCGAGTCTTTGT 59.469 36.000 0.00 0.00 0.00 2.83
499 500 6.000891 TCATTTGGTTTCATCGAGTCTTTG 57.999 37.500 0.00 0.00 0.00 2.77
500 501 5.997746 TCTCATTTGGTTTCATCGAGTCTTT 59.002 36.000 0.00 0.00 0.00 2.52
501 502 5.551233 TCTCATTTGGTTTCATCGAGTCTT 58.449 37.500 0.00 0.00 0.00 3.01
502 503 5.152623 TCTCATTTGGTTTCATCGAGTCT 57.847 39.130 0.00 0.00 0.00 3.24
503 504 5.862924 TTCTCATTTGGTTTCATCGAGTC 57.137 39.130 0.00 0.00 0.00 3.36
504 505 5.939883 TGATTCTCATTTGGTTTCATCGAGT 59.060 36.000 0.00 0.00 0.00 4.18
505 506 6.093219 AGTGATTCTCATTTGGTTTCATCGAG 59.907 38.462 0.00 0.00 0.00 4.04
506 507 5.939883 AGTGATTCTCATTTGGTTTCATCGA 59.060 36.000 0.00 0.00 0.00 3.59
507 508 6.187125 AGTGATTCTCATTTGGTTTCATCG 57.813 37.500 0.00 0.00 0.00 3.84
508 509 6.092670 TCGAGTGATTCTCATTTGGTTTCATC 59.907 38.462 0.00 0.00 42.88 2.92
509 510 5.939883 TCGAGTGATTCTCATTTGGTTTCAT 59.060 36.000 0.00 0.00 42.88 2.57
510 511 5.304778 TCGAGTGATTCTCATTTGGTTTCA 58.695 37.500 0.00 0.00 42.88 2.69
511 512 5.862924 TCGAGTGATTCTCATTTGGTTTC 57.137 39.130 0.00 0.00 42.88 2.78
512 513 6.633500 TTTCGAGTGATTCTCATTTGGTTT 57.367 33.333 0.00 0.00 42.88 3.27
513 514 6.633500 TTTTCGAGTGATTCTCATTTGGTT 57.367 33.333 0.00 0.00 42.88 3.67
514 515 6.633500 TTTTTCGAGTGATTCTCATTTGGT 57.367 33.333 0.00 0.00 42.88 3.67
515 516 9.793252 AATATTTTTCGAGTGATTCTCATTTGG 57.207 29.630 0.00 0.00 42.88 3.28
542 543 8.844244 GTGATATCTGATGGCTTAAGAATTTGT 58.156 33.333 6.67 0.00 0.00 2.83
543 544 8.013947 CGTGATATCTGATGGCTTAAGAATTTG 58.986 37.037 6.67 0.00 0.00 2.32
544 545 7.716998 ACGTGATATCTGATGGCTTAAGAATTT 59.283 33.333 6.67 0.00 0.00 1.82
545 546 7.220030 ACGTGATATCTGATGGCTTAAGAATT 58.780 34.615 6.67 0.00 0.00 2.17
546 547 6.763355 ACGTGATATCTGATGGCTTAAGAAT 58.237 36.000 6.67 0.00 0.00 2.40
547 548 6.161855 ACGTGATATCTGATGGCTTAAGAA 57.838 37.500 6.67 0.00 0.00 2.52
548 549 5.791336 ACGTGATATCTGATGGCTTAAGA 57.209 39.130 6.67 0.00 0.00 2.10
549 550 6.447162 TGTACGTGATATCTGATGGCTTAAG 58.553 40.000 0.00 0.00 0.00 1.85
550 551 6.399639 TGTACGTGATATCTGATGGCTTAA 57.600 37.500 0.00 0.00 0.00 1.85
551 552 6.389906 CATGTACGTGATATCTGATGGCTTA 58.610 40.000 9.62 0.00 0.00 3.09
552 553 4.937201 TGTACGTGATATCTGATGGCTT 57.063 40.909 0.00 0.00 0.00 4.35
553 554 4.814147 CATGTACGTGATATCTGATGGCT 58.186 43.478 9.62 0.00 0.00 4.75
554 555 3.369147 GCATGTACGTGATATCTGATGGC 59.631 47.826 19.38 0.00 0.00 4.40
555 556 3.928992 GGCATGTACGTGATATCTGATGG 59.071 47.826 19.38 0.00 0.00 3.51
556 557 4.814147 AGGCATGTACGTGATATCTGATG 58.186 43.478 19.38 0.00 0.00 3.07
557 558 4.379918 CGAGGCATGTACGTGATATCTGAT 60.380 45.833 19.38 0.00 0.00 2.90
558 559 3.058224 CGAGGCATGTACGTGATATCTGA 60.058 47.826 19.38 0.00 0.00 3.27
559 560 3.237628 CGAGGCATGTACGTGATATCTG 58.762 50.000 19.38 5.89 0.00 2.90
560 561 2.229062 CCGAGGCATGTACGTGATATCT 59.771 50.000 19.38 9.36 0.00 1.98
561 562 2.596452 CCGAGGCATGTACGTGATATC 58.404 52.381 19.38 11.04 0.00 1.63
562 563 1.336887 GCCGAGGCATGTACGTGATAT 60.337 52.381 19.38 3.13 41.49 1.63
563 564 0.031585 GCCGAGGCATGTACGTGATA 59.968 55.000 19.38 0.00 41.49 2.15
564 565 1.227263 GCCGAGGCATGTACGTGAT 60.227 57.895 19.38 6.11 41.49 3.06
565 566 2.183300 GCCGAGGCATGTACGTGA 59.817 61.111 19.38 0.00 41.49 4.35
575 576 0.249489 ATTCATCGTACTGCCGAGGC 60.249 55.000 7.26 7.26 40.68 4.70
576 577 3.309388 CTTATTCATCGTACTGCCGAGG 58.691 50.000 0.00 0.00 40.68 4.63
577 578 2.726760 GCTTATTCATCGTACTGCCGAG 59.273 50.000 0.00 0.00 40.68 4.63
578 579 2.361119 AGCTTATTCATCGTACTGCCGA 59.639 45.455 0.00 0.00 41.73 5.54
579 580 2.743938 AGCTTATTCATCGTACTGCCG 58.256 47.619 0.00 0.00 0.00 5.69
580 581 4.872664 ACTAGCTTATTCATCGTACTGCC 58.127 43.478 0.00 0.00 0.00 4.85
581 582 6.900189 TCTACTAGCTTATTCATCGTACTGC 58.100 40.000 0.00 0.00 0.00 4.40
582 583 9.900710 AAATCTACTAGCTTATTCATCGTACTG 57.099 33.333 0.00 0.00 0.00 2.74
586 587 9.413048 GCTTAAATCTACTAGCTTATTCATCGT 57.587 33.333 0.00 0.00 0.00 3.73
587 588 9.411801 TGCTTAAATCTACTAGCTTATTCATCG 57.588 33.333 0.00 0.00 34.77 3.84
590 591 9.534565 CAGTGCTTAAATCTACTAGCTTATTCA 57.465 33.333 0.00 0.00 34.77 2.57
591 592 9.535878 ACAGTGCTTAAATCTACTAGCTTATTC 57.464 33.333 0.00 0.00 34.77 1.75
592 593 9.319143 CACAGTGCTTAAATCTACTAGCTTATT 57.681 33.333 0.00 0.00 34.77 1.40
593 594 7.928706 CCACAGTGCTTAAATCTACTAGCTTAT 59.071 37.037 0.00 0.00 34.77 1.73
594 595 7.265673 CCACAGTGCTTAAATCTACTAGCTTA 58.734 38.462 0.00 0.00 34.77 3.09
595 596 6.109359 CCACAGTGCTTAAATCTACTAGCTT 58.891 40.000 0.00 0.00 34.77 3.74
596 597 5.395768 CCCACAGTGCTTAAATCTACTAGCT 60.396 44.000 0.00 0.00 34.77 3.32
597 598 4.811557 CCCACAGTGCTTAAATCTACTAGC 59.188 45.833 0.00 0.00 0.00 3.42
598 599 5.978814 ACCCACAGTGCTTAAATCTACTAG 58.021 41.667 0.00 0.00 0.00 2.57
605 606 7.826918 TTTAGTTAACCCACAGTGCTTAAAT 57.173 32.000 0.88 1.70 0.00 1.40
615 616 4.040706 AGTGGACGATTTAGTTAACCCACA 59.959 41.667 21.03 0.00 43.70 4.17
706 707 1.228769 TGTAGCTGAGGTCACCGGT 60.229 57.895 0.00 0.00 0.00 5.28
713 714 3.671740 TGTCTATCCTGTAGCTGAGGT 57.328 47.619 12.17 0.00 31.85 3.85
716 717 4.809193 AGGAATGTCTATCCTGTAGCTGA 58.191 43.478 0.00 0.00 45.60 4.26
737 744 0.389948 GACGACAGCCCCACACTTAG 60.390 60.000 0.00 0.00 0.00 2.18
738 745 0.830444 AGACGACAGCCCCACACTTA 60.830 55.000 0.00 0.00 0.00 2.24
907 3571 2.660224 TGGTGCGTACGTGCTGTG 60.660 61.111 17.90 0.00 35.36 3.66
910 3574 3.159858 AAGGTGGTGCGTACGTGCT 62.160 57.895 17.90 0.00 35.36 4.40
911 3575 2.663852 AAGGTGGTGCGTACGTGC 60.664 61.111 17.90 9.74 0.00 5.34
912 3576 0.669318 ATCAAGGTGGTGCGTACGTG 60.669 55.000 17.90 4.49 0.00 4.49
913 3577 0.389426 GATCAAGGTGGTGCGTACGT 60.389 55.000 17.90 0.00 0.00 3.57
916 3580 1.943968 GCTTGATCAAGGTGGTGCGTA 60.944 52.381 31.41 0.00 38.80 4.42
947 3611 7.821359 CCTCTTTCTTACTTTGAGTGATGATGA 59.179 37.037 0.00 0.00 0.00 2.92
948 3612 7.065563 CCCTCTTTCTTACTTTGAGTGATGATG 59.934 40.741 0.00 0.00 0.00 3.07
949 3613 7.108847 CCCTCTTTCTTACTTTGAGTGATGAT 58.891 38.462 0.00 0.00 0.00 2.45
1015 3685 5.522460 TCACTTCTTGCTGTGTGTAAGTAAC 59.478 40.000 0.00 0.00 39.07 2.50
1016 3686 5.666462 TCACTTCTTGCTGTGTGTAAGTAA 58.334 37.500 0.00 0.00 39.07 2.24
1020 3691 2.872245 GCTCACTTCTTGCTGTGTGTAA 59.128 45.455 0.00 0.00 35.82 2.41
1031 3702 2.072298 GCACATCTTCGCTCACTTCTT 58.928 47.619 0.00 0.00 0.00 2.52
1042 3713 4.166011 GCACCGCCGCACATCTTC 62.166 66.667 0.00 0.00 0.00 2.87
1182 3853 3.151022 GGAGCACCTCCTCCTCCG 61.151 72.222 4.04 0.00 46.41 4.63
1252 3926 2.920384 TGTGCCGGACTACTGCCA 60.920 61.111 5.05 0.00 0.00 4.92
1261 3935 3.000819 CCCCTGTACTGTGCCGGA 61.001 66.667 5.05 0.00 0.00 5.14
1422 4096 3.435186 GGAAGTTGAGCCTGGCGC 61.435 66.667 16.00 16.00 37.98 6.53
1489 4166 0.170339 GGTCAATAACAAGGCACGGC 59.830 55.000 0.00 0.00 0.00 5.68
1494 4171 1.659098 CGACGAGGTCAATAACAAGGC 59.341 52.381 0.00 0.00 32.09 4.35
1496 4173 2.592897 CGTCGACGAGGTCAATAACAAG 59.407 50.000 33.35 0.00 43.02 3.16
1512 4189 0.675837 ATCACCCTCTTCGTCGTCGA 60.676 55.000 0.00 0.00 44.66 4.20
1635 4312 1.632409 ACTCCACTTCAGCATGGACAT 59.368 47.619 0.00 0.00 40.17 3.06
1953 4642 1.063174 GCGAGTGTCGTACGTATCCTT 59.937 52.381 16.05 0.00 42.81 3.36
1960 4649 2.051638 CACTTGCGAGTGTCGTACG 58.948 57.895 23.84 9.53 46.57 3.67
2013 4732 9.045223 AGGTGTTTTAATTTCTTTGATGAAAGC 57.955 29.630 0.00 0.00 39.01 3.51
2062 4787 7.222872 ACAGATATTTTGCAATCCCAAAACAA 58.777 30.769 0.00 0.00 44.60 2.83
2094 4819 8.263640 AGTATTGATTGAGACTTTGCTATGTCT 58.736 33.333 14.81 14.81 45.06 3.41
2138 4863 7.884816 AGAAATTTTTGCACAGATCTTCATG 57.115 32.000 0.00 0.00 0.00 3.07
2148 4873 9.218440 AGAAAAGAAGAAAGAAATTTTTGCACA 57.782 25.926 0.00 0.00 0.00 4.57
2197 4945 7.095355 GGCAGGTATGTCGATTTTATTACGATT 60.095 37.037 0.00 0.00 38.27 3.34
2201 4949 6.482308 ACAGGCAGGTATGTCGATTTTATTAC 59.518 38.462 0.00 0.00 35.66 1.89
2213 4961 1.644509 TCACAGACAGGCAGGTATGT 58.355 50.000 4.11 4.11 43.45 2.29
2224 4990 2.779430 AGGGATGCCATAATCACAGACA 59.221 45.455 5.86 0.00 31.97 3.41
2227 4993 3.559069 ACAAGGGATGCCATAATCACAG 58.441 45.455 5.86 0.00 31.97 3.66
2250 5016 3.503748 GCAAACAAGGAGTATCAAGTGCT 59.496 43.478 0.00 0.00 36.25 4.40
2269 5035 9.693739 TTGATATAAAAGTAGGAGGAAATGCAA 57.306 29.630 0.00 0.00 0.00 4.08
2321 5087 4.134563 ACGTAGGAGCAGACATTGTTTTT 58.865 39.130 0.00 0.00 0.00 1.94
2322 5088 3.740115 ACGTAGGAGCAGACATTGTTTT 58.260 40.909 0.00 0.00 0.00 2.43
2323 5089 3.402628 ACGTAGGAGCAGACATTGTTT 57.597 42.857 0.00 0.00 0.00 2.83
2324 5090 4.530710 TTACGTAGGAGCAGACATTGTT 57.469 40.909 0.00 0.00 0.00 2.83
2325 5091 4.021368 AGTTTACGTAGGAGCAGACATTGT 60.021 41.667 0.00 0.00 0.00 2.71
2326 5092 4.495422 AGTTTACGTAGGAGCAGACATTG 58.505 43.478 0.00 0.00 0.00 2.82
2327 5093 4.803098 AGTTTACGTAGGAGCAGACATT 57.197 40.909 0.00 0.00 0.00 2.71
2328 5094 5.909621 TTAGTTTACGTAGGAGCAGACAT 57.090 39.130 0.00 0.00 0.00 3.06
2329 5095 5.710513 TTTAGTTTACGTAGGAGCAGACA 57.289 39.130 0.00 0.00 0.00 3.41
2330 5096 7.431668 CACTATTTAGTTTACGTAGGAGCAGAC 59.568 40.741 0.00 0.00 33.46 3.51
2331 5097 7.478322 CACTATTTAGTTTACGTAGGAGCAGA 58.522 38.462 0.00 0.00 33.46 4.26
2332 5098 6.198591 GCACTATTTAGTTTACGTAGGAGCAG 59.801 42.308 0.00 0.00 33.46 4.24
2333 5099 6.038356 GCACTATTTAGTTTACGTAGGAGCA 58.962 40.000 0.00 0.00 33.46 4.26
2334 5100 6.038356 TGCACTATTTAGTTTACGTAGGAGC 58.962 40.000 0.00 0.00 33.46 4.70
2335 5101 9.909644 ATATGCACTATTTAGTTTACGTAGGAG 57.090 33.333 0.00 0.00 33.46 3.69
2431 5205 3.005897 AGCACGCCTTATGTATCTAGTGG 59.994 47.826 0.00 0.00 0.00 4.00
2551 5325 3.181475 CCTCAAGTACTGTGTGTGTCAGT 60.181 47.826 0.00 4.11 46.10 3.41
2584 5358 7.050970 TGTAATAAGTGTGTGACTGAGACTT 57.949 36.000 0.00 0.00 34.02 3.01
2592 5366 6.884187 ACATTCGTTGTAATAAGTGTGTGAC 58.116 36.000 0.00 0.00 36.57 3.67
2699 5474 2.113860 ATGTCGTTGGAGTTGATGGG 57.886 50.000 0.00 0.00 0.00 4.00
2745 5522 3.554337 GGCTTTTCAGACGAGTAAGGTGA 60.554 47.826 0.00 0.00 0.00 4.02
2819 5599 8.349983 GTTCATTACTCCTTTGTGTTACATTGT 58.650 33.333 0.00 0.00 0.00 2.71
2870 5652 0.995024 AGCTTTCCACCAGCCATAGT 59.005 50.000 0.00 0.00 38.09 2.12
2871 5653 1.211457 AGAGCTTTCCACCAGCCATAG 59.789 52.381 0.00 0.00 38.09 2.23
2966 5750 8.367911 GTTGGAGGAACCTTCTCAATTTTTAAT 58.632 33.333 0.61 0.00 39.86 1.40
2972 5756 4.104738 TGAGTTGGAGGAACCTTCTCAATT 59.895 41.667 0.61 1.73 41.59 2.32
3072 5859 4.991056 CCCGTTATGGACATCTTGAGTATG 59.009 45.833 0.00 0.00 42.00 2.39
3142 5931 5.254032 AGATGGAGTCTTATGGGGAAAAGTT 59.746 40.000 0.00 0.00 31.47 2.66
3154 5943 3.383698 AACGGAGGAGATGGAGTCTTA 57.616 47.619 0.00 0.00 37.29 2.10
3162 5951 4.541779 CGAGAAATCTAACGGAGGAGATG 58.458 47.826 0.00 0.00 35.08 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.