Multiple sequence alignment - TraesCS4B01G299400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G299400 chr4B 100.000 3571 0 0 1 3571 585824018 585820448 0.000000e+00 6595.0
1 TraesCS4B01G299400 chr4B 84.908 868 94 20 2720 3557 585731710 585730850 0.000000e+00 843.0
2 TraesCS4B01G299400 chr4B 84.118 913 96 20 1406 2298 585964043 585963160 0.000000e+00 837.0
3 TraesCS4B01G299400 chr4B 86.100 482 39 15 853 1322 585964542 585964077 8.910000e-136 494.0
4 TraesCS4B01G299400 chr4B 86.686 353 45 2 3192 3544 585961490 585961140 1.200000e-104 390.0
5 TraesCS4B01G299400 chr4D 86.239 2340 177 55 779 3035 467636980 467634703 0.000000e+00 2403.0
6 TraesCS4B01G299400 chr4D 82.092 564 70 12 1757 2298 467792420 467791866 1.510000e-123 453.0
7 TraesCS4B01G299400 chr4D 86.990 392 45 5 3183 3571 467634645 467634257 1.520000e-118 436.0
8 TraesCS4B01G299400 chr4D 84.768 453 46 14 875 1323 467801363 467800930 1.970000e-117 433.0
9 TraesCS4B01G299400 chr4D 83.108 444 53 13 3118 3544 467790769 467790331 5.590000e-103 385.0
10 TraesCS4B01G299400 chr4D 86.127 173 19 1 2894 3066 467791114 467790947 7.880000e-42 182.0
11 TraesCS4B01G299400 chr4D 78.626 131 23 5 555 684 455694844 455694970 8.220000e-12 82.4
12 TraesCS4B01G299400 chr4A 86.588 1521 131 42 1406 2893 3370665 3372145 0.000000e+00 1611.0
13 TraesCS4B01G299400 chr4A 84.354 882 73 17 1406 2254 3351492 3352341 0.000000e+00 804.0
14 TraesCS4B01G299400 chr4A 86.471 680 74 9 2894 3571 3382283 3382946 0.000000e+00 730.0
15 TraesCS4B01G299400 chr4A 88.551 559 47 10 740 1290 3370054 3370603 0.000000e+00 662.0
16 TraesCS4B01G299400 chr4A 88.504 548 50 9 1 536 3369500 3370046 0.000000e+00 651.0
17 TraesCS4B01G299400 chr4A 87.379 412 45 5 3161 3566 3373515 3373925 1.940000e-127 466.0
18 TraesCS4B01G299400 chr4A 86.667 330 36 6 995 1319 3351128 3351454 3.390000e-95 359.0
19 TraesCS4B01G299400 chr4A 92.143 140 11 0 2928 3067 3373357 3373496 7.820000e-47 198.0
20 TraesCS4B01G299400 chr4A 93.878 49 3 0 2250 2298 3353424 3353472 1.370000e-09 75.0
21 TraesCS4B01G299400 chr5B 96.324 136 4 1 554 689 558124234 558124100 4.640000e-54 222.0
22 TraesCS4B01G299400 chr5B 98.077 52 1 0 685 736 558123829 558123778 1.370000e-14 91.6
23 TraesCS4B01G299400 chr1B 90.533 169 13 2 556 723 605661652 605661818 1.670000e-53 220.0
24 TraesCS4B01G299400 chr1B 94.118 34 2 0 61 94 655131908 655131875 6.000000e-03 52.8
25 TraesCS4B01G299400 chr2D 88.439 173 20 0 1476 1648 61021907 61022079 3.610000e-50 209.0
26 TraesCS4B01G299400 chr2B 87.283 173 22 0 1476 1648 95796566 95796738 7.820000e-47 198.0
27 TraesCS4B01G299400 chr2A 87.283 173 22 0 1476 1648 61488452 61488624 7.820000e-47 198.0
28 TraesCS4B01G299400 chr3D 86.957 161 21 0 1486 1646 486050761 486050601 7.880000e-42 182.0
29 TraesCS4B01G299400 chr3D 93.478 46 3 0 14 59 603013126 603013171 6.400000e-08 69.4
30 TraesCS4B01G299400 chr5A 82.915 199 32 1 1476 1674 525026124 525026320 1.020000e-40 178.0
31 TraesCS4B01G299400 chrUn 80.435 184 33 3 555 737 1925769 1925950 1.730000e-28 137.0
32 TraesCS4B01G299400 chr7A 77.838 185 37 4 555 738 566344842 566344661 1.050000e-20 111.0
33 TraesCS4B01G299400 chr7A 89.231 65 4 3 555 618 543430510 543430572 1.060000e-10 78.7
34 TraesCS4B01G299400 chr1A 92.000 50 2 2 12 60 347918453 347918405 6.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G299400 chr4B 585820448 585824018 3570 True 6595.000000 6595 100.000000 1 3571 1 chr4B.!!$R2 3570
1 TraesCS4B01G299400 chr4B 585730850 585731710 860 True 843.000000 843 84.908000 2720 3557 1 chr4B.!!$R1 837
2 TraesCS4B01G299400 chr4B 585961140 585964542 3402 True 573.666667 837 85.634667 853 3544 3 chr4B.!!$R3 2691
3 TraesCS4B01G299400 chr4D 467634257 467636980 2723 True 1419.500000 2403 86.614500 779 3571 2 chr4D.!!$R2 2792
4 TraesCS4B01G299400 chr4D 467790331 467792420 2089 True 340.000000 453 83.775667 1757 3544 3 chr4D.!!$R3 1787
5 TraesCS4B01G299400 chr4A 3382283 3382946 663 False 730.000000 730 86.471000 2894 3571 1 chr4A.!!$F1 677
6 TraesCS4B01G299400 chr4A 3369500 3373925 4425 False 717.600000 1611 88.633000 1 3566 5 chr4A.!!$F3 3565
7 TraesCS4B01G299400 chr4A 3351128 3353472 2344 False 412.666667 804 88.299667 995 2298 3 chr4A.!!$F2 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 578 0.108138 AGTGGTCCGAGCAATGCTAC 60.108 55.0 8.12 2.41 39.88 3.58 F
570 582 0.108138 GTCCGAGCAATGCTACACCT 60.108 55.0 8.12 0.00 39.88 4.00 F
1818 1873 0.249573 GGAGTTTTCGGACGTGGACA 60.250 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 3539 0.667792 GCAGGGTCTGACTGACGAAC 60.668 60.0 7.85 0.61 46.24 3.95 R
2328 3540 0.827925 AGCAGGGTCTGACTGACGAA 60.828 55.0 7.85 0.00 46.24 3.85 R
3402 6874 0.729116 CGAGGCAGTTTTCGCATCAT 59.271 50.0 0.00 0.00 40.08 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.866770 CCTCTGTCTCAAAATAAGTGTCGTTA 59.133 38.462 0.00 0.00 0.00 3.18
99 100 7.227910 GGGAGTACTTGATTACTGTTGTTTCAA 59.772 37.037 0.00 0.00 32.17 2.69
101 102 9.434559 GAGTACTTGATTACTGTTGTTTCAAAC 57.565 33.333 0.00 0.00 32.17 2.93
103 104 6.262601 ACTTGATTACTGTTGTTTCAAACGG 58.737 36.000 0.00 0.00 41.38 4.44
110 111 0.247735 TTGTTTCAAACGGTGCGACG 60.248 50.000 0.00 0.00 40.31 5.12
128 129 4.473199 CGACGTCACTTCTCAAGTAATCA 58.527 43.478 17.16 0.00 40.46 2.57
129 130 4.915667 CGACGTCACTTCTCAAGTAATCAA 59.084 41.667 17.16 0.00 40.46 2.57
136 137 8.180267 GTCACTTCTCAAGTAATCAATCAATGG 58.820 37.037 0.00 0.00 40.46 3.16
159 160 7.817440 TGGTATCAATTAGGCCCAACTAATTA 58.183 34.615 0.00 0.00 46.48 1.40
179 180 9.584839 CTAATTATTGTCAAAAGTTTTTGCAGC 57.415 29.630 11.50 6.13 45.35 5.25
189 190 1.926510 GTTTTTGCAGCACAAGTGGTC 59.073 47.619 0.00 0.00 40.06 4.02
198 199 0.859232 CACAAGTGGTCGTCCTTTCG 59.141 55.000 0.00 0.00 34.23 3.46
213 214 5.602628 GTCCTTTCGTGGATATCTAAGCTT 58.397 41.667 3.48 3.48 38.52 3.74
229 230 3.969287 AGCTTTGTCACTAGAGCATCA 57.031 42.857 0.00 0.00 37.82 3.07
241 242 0.529378 GAGCATCAAAGCCAAGTGGG 59.471 55.000 0.00 0.00 35.32 4.61
258 259 6.601613 CCAAGTGGGTAGCAAGTTTATGAATA 59.398 38.462 0.00 0.00 0.00 1.75
342 344 5.303078 TGATAGAGCTAGAGGGTTGTTGATC 59.697 44.000 0.00 0.00 0.00 2.92
346 348 2.355108 GCTAGAGGGTTGTTGATCTGCA 60.355 50.000 0.00 0.00 0.00 4.41
366 368 3.084039 CAGGATGCACCACAATAACACT 58.916 45.455 7.86 0.00 42.04 3.55
368 370 4.022068 CAGGATGCACCACAATAACACTTT 60.022 41.667 7.86 0.00 42.04 2.66
404 406 5.983540 AGAGTAATAAGAACCTTGAGGCTG 58.016 41.667 0.00 0.00 39.32 4.85
427 429 2.779755 TTGTGTATGGTGTGGCTAGG 57.220 50.000 0.00 0.00 0.00 3.02
428 430 1.945580 TGTGTATGGTGTGGCTAGGA 58.054 50.000 0.00 0.00 0.00 2.94
430 432 1.553248 GTGTATGGTGTGGCTAGGACA 59.447 52.381 0.00 0.00 0.00 4.02
432 434 2.434336 TGTATGGTGTGGCTAGGACATC 59.566 50.000 0.00 0.00 0.00 3.06
433 435 1.885049 ATGGTGTGGCTAGGACATCT 58.115 50.000 0.00 0.00 0.00 2.90
434 436 1.195115 TGGTGTGGCTAGGACATCTC 58.805 55.000 0.00 0.00 0.00 2.75
435 437 1.195115 GGTGTGGCTAGGACATCTCA 58.805 55.000 0.00 0.00 0.00 3.27
436 438 1.134670 GGTGTGGCTAGGACATCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
437 439 0.817654 TGTGGCTAGGACATCTCACG 59.182 55.000 0.00 0.00 0.00 4.35
447 457 5.312120 AGGACATCTCACGTAACTAAGTG 57.688 43.478 0.00 0.00 39.55 3.16
450 460 6.432162 AGGACATCTCACGTAACTAAGTGTAA 59.568 38.462 0.00 0.00 39.25 2.41
451 461 6.525976 GGACATCTCACGTAACTAAGTGTAAC 59.474 42.308 0.00 0.00 39.25 2.50
518 530 7.767250 TCTCCACGTAAGATCTCATGAATAT 57.233 36.000 0.00 0.00 43.62 1.28
529 541 9.941325 AAGATCTCATGAATATAACATGGACTC 57.059 33.333 17.12 12.60 43.38 3.36
530 542 8.249638 AGATCTCATGAATATAACATGGACTCG 58.750 37.037 17.12 6.72 43.38 4.18
536 548 6.280643 TGAATATAACATGGACTCGGACTTG 58.719 40.000 0.00 0.00 0.00 3.16
537 549 3.543680 ATAACATGGACTCGGACTTGG 57.456 47.619 0.00 0.00 0.00 3.61
538 550 1.056660 AACATGGACTCGGACTTGGT 58.943 50.000 0.00 0.00 0.00 3.67
539 551 1.056660 ACATGGACTCGGACTTGGTT 58.943 50.000 0.00 0.00 0.00 3.67
540 552 2.253610 ACATGGACTCGGACTTGGTTA 58.746 47.619 0.00 0.00 0.00 2.85
541 553 2.635915 ACATGGACTCGGACTTGGTTAA 59.364 45.455 0.00 0.00 0.00 2.01
542 554 3.071892 ACATGGACTCGGACTTGGTTAAA 59.928 43.478 0.00 0.00 0.00 1.52
543 555 4.261801 CATGGACTCGGACTTGGTTAAAT 58.738 43.478 0.00 0.00 0.00 1.40
544 556 3.934068 TGGACTCGGACTTGGTTAAATC 58.066 45.455 0.00 0.00 0.00 2.17
545 557 3.581332 TGGACTCGGACTTGGTTAAATCT 59.419 43.478 0.00 0.00 0.00 2.40
546 558 4.182339 GGACTCGGACTTGGTTAAATCTC 58.818 47.826 0.00 0.00 0.00 2.75
547 559 4.322499 GGACTCGGACTTGGTTAAATCTCA 60.322 45.833 0.00 0.00 0.00 3.27
548 560 4.822026 ACTCGGACTTGGTTAAATCTCAG 58.178 43.478 0.00 0.00 0.00 3.35
549 561 4.283722 ACTCGGACTTGGTTAAATCTCAGT 59.716 41.667 0.00 0.00 0.00 3.41
550 562 4.566004 TCGGACTTGGTTAAATCTCAGTG 58.434 43.478 0.00 0.00 0.00 3.66
551 563 3.684788 CGGACTTGGTTAAATCTCAGTGG 59.315 47.826 0.00 0.00 0.00 4.00
552 564 4.652822 GGACTTGGTTAAATCTCAGTGGT 58.347 43.478 0.00 0.00 0.00 4.16
553 565 4.695928 GGACTTGGTTAAATCTCAGTGGTC 59.304 45.833 0.00 0.00 0.00 4.02
554 566 4.652822 ACTTGGTTAAATCTCAGTGGTCC 58.347 43.478 0.00 0.00 0.00 4.46
555 567 3.328382 TGGTTAAATCTCAGTGGTCCG 57.672 47.619 0.00 0.00 0.00 4.79
556 568 2.901192 TGGTTAAATCTCAGTGGTCCGA 59.099 45.455 0.00 0.00 0.00 4.55
557 569 3.056107 TGGTTAAATCTCAGTGGTCCGAG 60.056 47.826 0.00 0.00 0.00 4.63
558 570 2.930682 GTTAAATCTCAGTGGTCCGAGC 59.069 50.000 0.00 0.00 0.00 5.03
559 571 0.976641 AAATCTCAGTGGTCCGAGCA 59.023 50.000 0.00 0.00 0.00 4.26
560 572 0.976641 AATCTCAGTGGTCCGAGCAA 59.023 50.000 0.89 0.00 0.00 3.91
561 573 1.198713 ATCTCAGTGGTCCGAGCAAT 58.801 50.000 0.89 0.00 0.00 3.56
562 574 0.247460 TCTCAGTGGTCCGAGCAATG 59.753 55.000 19.31 19.31 42.26 2.82
563 575 1.364626 CTCAGTGGTCCGAGCAATGC 61.365 60.000 20.28 0.00 40.91 3.56
564 576 1.376424 CAGTGGTCCGAGCAATGCT 60.376 57.895 7.79 7.79 43.88 3.79
565 577 0.108186 CAGTGGTCCGAGCAATGCTA 60.108 55.000 14.35 0.00 39.88 3.49
566 578 0.108138 AGTGGTCCGAGCAATGCTAC 60.108 55.000 8.12 2.41 39.88 3.58
567 579 0.391130 GTGGTCCGAGCAATGCTACA 60.391 55.000 8.12 0.00 39.88 2.74
568 580 0.391130 TGGTCCGAGCAATGCTACAC 60.391 55.000 8.12 4.90 39.88 2.90
569 581 1.090052 GGTCCGAGCAATGCTACACC 61.090 60.000 8.12 10.76 39.88 4.16
570 582 0.108138 GTCCGAGCAATGCTACACCT 60.108 55.000 8.12 0.00 39.88 4.00
571 583 1.136305 GTCCGAGCAATGCTACACCTA 59.864 52.381 8.12 0.00 39.88 3.08
572 584 1.136305 TCCGAGCAATGCTACACCTAC 59.864 52.381 8.12 0.00 39.88 3.18
573 585 1.200483 CGAGCAATGCTACACCTACG 58.800 55.000 8.12 1.21 39.88 3.51
574 586 1.469251 CGAGCAATGCTACACCTACGT 60.469 52.381 8.12 0.00 39.88 3.57
575 587 2.223409 CGAGCAATGCTACACCTACGTA 60.223 50.000 8.12 0.00 39.88 3.57
576 588 3.372954 GAGCAATGCTACACCTACGTAG 58.627 50.000 15.92 15.92 39.88 3.51
614 626 1.787012 CGTAACAACTTACGTGGCCT 58.213 50.000 3.32 0.00 46.80 5.19
615 627 2.137523 CGTAACAACTTACGTGGCCTT 58.862 47.619 3.32 0.00 46.80 4.35
616 628 2.545106 CGTAACAACTTACGTGGCCTTT 59.455 45.455 3.32 0.00 46.80 3.11
617 629 3.002553 CGTAACAACTTACGTGGCCTTTT 59.997 43.478 3.32 0.00 46.80 2.27
618 630 4.496175 CGTAACAACTTACGTGGCCTTTTT 60.496 41.667 3.32 0.00 46.80 1.94
638 650 4.316025 TTTGGTTAGAGGAAATCAGGGG 57.684 45.455 0.00 0.00 0.00 4.79
639 651 3.214694 TGGTTAGAGGAAATCAGGGGA 57.785 47.619 0.00 0.00 0.00 4.81
640 652 3.115390 TGGTTAGAGGAAATCAGGGGAG 58.885 50.000 0.00 0.00 0.00 4.30
641 653 2.439880 GGTTAGAGGAAATCAGGGGAGG 59.560 54.545 0.00 0.00 0.00 4.30
642 654 2.439880 GTTAGAGGAAATCAGGGGAGGG 59.560 54.545 0.00 0.00 0.00 4.30
643 655 0.327964 AGAGGAAATCAGGGGAGGGG 60.328 60.000 0.00 0.00 0.00 4.79
644 656 1.309102 AGGAAATCAGGGGAGGGGG 60.309 63.158 0.00 0.00 0.00 5.40
645 657 2.603580 GAAATCAGGGGAGGGGGC 59.396 66.667 0.00 0.00 0.00 5.80
646 658 3.029981 AAATCAGGGGAGGGGGCC 61.030 66.667 0.00 0.00 0.00 5.80
660 672 2.121608 GGCCCCACCCCATTGAAA 59.878 61.111 0.00 0.00 0.00 2.69
661 673 1.306911 GGCCCCACCCCATTGAAAT 60.307 57.895 0.00 0.00 0.00 2.17
662 674 1.337384 GGCCCCACCCCATTGAAATC 61.337 60.000 0.00 0.00 0.00 2.17
663 675 0.617249 GCCCCACCCCATTGAAATCA 60.617 55.000 0.00 0.00 0.00 2.57
664 676 1.488390 CCCCACCCCATTGAAATCAG 58.512 55.000 0.00 0.00 0.00 2.90
665 677 1.488390 CCCACCCCATTGAAATCAGG 58.512 55.000 0.00 0.00 0.00 3.86
666 678 1.488390 CCACCCCATTGAAATCAGGG 58.512 55.000 5.01 5.01 43.88 4.45
669 681 2.519937 CCCATTGAAATCAGGGGGC 58.480 57.895 12.18 0.00 38.13 5.80
670 682 1.394266 CCCATTGAAATCAGGGGGCG 61.394 60.000 12.18 0.00 38.13 6.13
671 683 1.394266 CCATTGAAATCAGGGGGCGG 61.394 60.000 0.00 0.00 0.00 6.13
672 684 0.684153 CATTGAAATCAGGGGGCGGT 60.684 55.000 0.00 0.00 0.00 5.68
673 685 0.684153 ATTGAAATCAGGGGGCGGTG 60.684 55.000 0.00 0.00 0.00 4.94
674 686 2.440247 GAAATCAGGGGGCGGTGG 60.440 66.667 0.00 0.00 0.00 4.61
675 687 2.938798 AAATCAGGGGGCGGTGGA 60.939 61.111 0.00 0.00 0.00 4.02
676 688 2.493273 GAAATCAGGGGGCGGTGGAA 62.493 60.000 0.00 0.00 0.00 3.53
677 689 2.499303 AAATCAGGGGGCGGTGGAAG 62.499 60.000 0.00 0.00 0.00 3.46
680 692 4.760220 AGGGGGCGGTGGAAGGAT 62.760 66.667 0.00 0.00 0.00 3.24
681 693 3.739613 GGGGGCGGTGGAAGGATT 61.740 66.667 0.00 0.00 0.00 3.01
682 694 2.380285 GGGGGCGGTGGAAGGATTA 61.380 63.158 0.00 0.00 0.00 1.75
683 695 1.148498 GGGGCGGTGGAAGGATTAG 59.852 63.158 0.00 0.00 0.00 1.73
684 696 1.632965 GGGGCGGTGGAAGGATTAGT 61.633 60.000 0.00 0.00 0.00 2.24
685 697 0.255033 GGGCGGTGGAAGGATTAGTT 59.745 55.000 0.00 0.00 0.00 2.24
686 698 1.487558 GGGCGGTGGAAGGATTAGTTA 59.512 52.381 0.00 0.00 0.00 2.24
687 699 2.484947 GGGCGGTGGAAGGATTAGTTAG 60.485 54.545 0.00 0.00 0.00 2.34
688 700 2.484947 GGCGGTGGAAGGATTAGTTAGG 60.485 54.545 0.00 0.00 0.00 2.69
689 701 2.484947 GCGGTGGAAGGATTAGTTAGGG 60.485 54.545 0.00 0.00 0.00 3.53
690 702 3.036091 CGGTGGAAGGATTAGTTAGGGA 58.964 50.000 0.00 0.00 0.00 4.20
691 703 3.069729 CGGTGGAAGGATTAGTTAGGGAG 59.930 52.174 0.00 0.00 0.00 4.30
692 704 3.391626 GGTGGAAGGATTAGTTAGGGAGG 59.608 52.174 0.00 0.00 0.00 4.30
693 705 4.038633 GTGGAAGGATTAGTTAGGGAGGT 58.961 47.826 0.00 0.00 0.00 3.85
694 706 4.473922 GTGGAAGGATTAGTTAGGGAGGTT 59.526 45.833 0.00 0.00 0.00 3.50
695 707 5.045066 GTGGAAGGATTAGTTAGGGAGGTTT 60.045 44.000 0.00 0.00 0.00 3.27
696 708 5.191124 TGGAAGGATTAGTTAGGGAGGTTTC 59.809 44.000 0.00 0.00 0.00 2.78
697 709 5.354842 AAGGATTAGTTAGGGAGGTTTCG 57.645 43.478 0.00 0.00 0.00 3.46
698 710 4.359996 AGGATTAGTTAGGGAGGTTTCGT 58.640 43.478 0.00 0.00 0.00 3.85
699 711 5.522641 AGGATTAGTTAGGGAGGTTTCGTA 58.477 41.667 0.00 0.00 0.00 3.43
700 712 5.960202 AGGATTAGTTAGGGAGGTTTCGTAA 59.040 40.000 0.00 0.00 0.00 3.18
701 713 6.097981 AGGATTAGTTAGGGAGGTTTCGTAAG 59.902 42.308 0.00 0.00 0.00 2.34
723 735 9.189723 GTAAGATTACGTAGGCTTTTATGTAGG 57.810 37.037 14.55 0.00 0.00 3.18
724 736 7.357429 AGATTACGTAGGCTTTTATGTAGGT 57.643 36.000 0.00 0.00 0.00 3.08
725 737 7.208080 AGATTACGTAGGCTTTTATGTAGGTG 58.792 38.462 0.00 0.00 0.00 4.00
726 738 4.813750 ACGTAGGCTTTTATGTAGGTGT 57.186 40.909 0.00 0.00 0.00 4.16
727 739 5.920193 ACGTAGGCTTTTATGTAGGTGTA 57.080 39.130 0.00 0.00 0.00 2.90
728 740 5.899299 ACGTAGGCTTTTATGTAGGTGTAG 58.101 41.667 0.00 0.00 0.00 2.74
729 741 4.743644 CGTAGGCTTTTATGTAGGTGTAGC 59.256 45.833 0.00 0.00 0.00 3.58
730 742 4.837093 AGGCTTTTATGTAGGTGTAGCA 57.163 40.909 0.00 0.00 0.00 3.49
731 743 5.373812 AGGCTTTTATGTAGGTGTAGCAT 57.626 39.130 0.00 0.00 0.00 3.79
732 744 5.755849 AGGCTTTTATGTAGGTGTAGCATT 58.244 37.500 0.00 0.00 0.00 3.56
733 745 6.187682 AGGCTTTTATGTAGGTGTAGCATTT 58.812 36.000 0.00 0.00 0.00 2.32
734 746 6.663523 AGGCTTTTATGTAGGTGTAGCATTTT 59.336 34.615 0.00 0.00 0.00 1.82
735 747 7.178451 AGGCTTTTATGTAGGTGTAGCATTTTT 59.822 33.333 0.00 0.00 0.00 1.94
736 748 7.275560 GGCTTTTATGTAGGTGTAGCATTTTTG 59.724 37.037 0.00 0.00 0.00 2.44
738 750 6.767524 TTATGTAGGTGTAGCATTTTTGGG 57.232 37.500 0.00 0.00 0.00 4.12
749 761 5.334724 AGCATTTTTGGGCTGAGATTTAG 57.665 39.130 0.00 0.00 39.30 1.85
750 762 3.867493 GCATTTTTGGGCTGAGATTTAGC 59.133 43.478 0.00 0.00 40.41 3.09
751 763 4.621274 GCATTTTTGGGCTGAGATTTAGCA 60.621 41.667 0.00 0.00 42.88 3.49
777 789 2.607187 GATTGTGTATAGGATCCCGCG 58.393 52.381 8.55 0.00 0.00 6.46
823 835 4.641645 CCCTTGCCAGTCGCCACA 62.642 66.667 0.00 0.00 36.24 4.17
832 844 1.410517 CCAGTCGCCACATAGATCTGT 59.589 52.381 5.18 0.00 0.00 3.41
843 855 5.221581 CCACATAGATCTGTCATGTCATCCA 60.222 44.000 5.18 0.00 30.59 3.41
845 857 5.601729 ACATAGATCTGTCATGTCATCCAGT 59.398 40.000 5.18 0.00 0.00 4.00
983 1000 5.583061 TGTGTTATAAGTAGGTGCATTTCCG 59.417 40.000 0.00 0.00 0.00 4.30
1137 1167 1.374947 CCAGGCCTCGTCCAAGAAA 59.625 57.895 0.00 0.00 0.00 2.52
1176 1209 2.821366 CACAGCAGCATCCCCGAC 60.821 66.667 0.00 0.00 0.00 4.79
1283 1316 0.744414 GCATCCAAGCCTGCGTTCTA 60.744 55.000 0.00 0.00 0.00 2.10
1303 1342 1.002069 TCCGGGTAGGGTAACTCTCA 58.998 55.000 0.00 0.00 41.52 3.27
1305 1344 2.785269 TCCGGGTAGGGTAACTCTCATA 59.215 50.000 0.00 0.00 41.52 2.15
1308 1347 3.819902 CGGGTAGGGTAACTCTCATAGTC 59.180 52.174 0.00 0.00 37.50 2.59
1309 1348 4.151121 GGGTAGGGTAACTCTCATAGTCC 58.849 52.174 0.00 0.00 37.50 3.85
1310 1349 4.387211 GGGTAGGGTAACTCTCATAGTCCA 60.387 50.000 0.00 0.00 37.50 4.02
1311 1350 5.395611 GGTAGGGTAACTCTCATAGTCCAT 58.604 45.833 0.00 0.00 37.50 3.41
1312 1351 5.477637 GGTAGGGTAACTCTCATAGTCCATC 59.522 48.000 0.00 0.00 37.50 3.51
1313 1352 4.145807 AGGGTAACTCTCATAGTCCATCG 58.854 47.826 0.00 0.00 37.50 3.84
1314 1353 4.141228 AGGGTAACTCTCATAGTCCATCGA 60.141 45.833 0.00 0.00 37.50 3.59
1315 1354 4.216687 GGGTAACTCTCATAGTCCATCGAG 59.783 50.000 0.00 0.00 37.50 4.04
1316 1355 4.822896 GGTAACTCTCATAGTCCATCGAGT 59.177 45.833 0.00 0.00 37.50 4.18
1317 1356 5.996513 GGTAACTCTCATAGTCCATCGAGTA 59.003 44.000 0.00 0.00 37.50 2.59
1318 1357 6.655848 GGTAACTCTCATAGTCCATCGAGTAT 59.344 42.308 0.00 0.00 37.50 2.12
1331 1370 5.999600 TCCATCGAGTATGCAATCATGAAAT 59.000 36.000 0.00 0.00 33.92 2.17
1336 1375 8.382030 TCGAGTATGCAATCATGAAATAATGT 57.618 30.769 0.00 0.00 34.22 2.71
1343 1382 7.705214 TGCAATCATGAAATAATGTTCATCGA 58.295 30.769 0.00 0.00 44.58 3.59
1361 1400 2.095768 TCGACGTTAGTTCTTGGGTACG 60.096 50.000 0.00 0.00 35.34 3.67
1363 1402 1.337167 ACGTTAGTTCTTGGGTACGCC 60.337 52.381 7.55 0.31 32.69 5.68
1387 1427 4.687483 CGTCACGTACTTAGGTGGAAAATT 59.313 41.667 8.76 0.00 41.12 1.82
1395 1435 7.094549 CGTACTTAGGTGGAAAATTTGGATGAA 60.095 37.037 0.00 0.00 0.00 2.57
1396 1436 7.610580 ACTTAGGTGGAAAATTTGGATGAAA 57.389 32.000 0.00 0.00 0.00 2.69
1421 1461 2.813172 TGATGAGATTCGTTTTGCAGCA 59.187 40.909 0.00 0.00 0.00 4.41
1426 1466 2.095853 AGATTCGTTTTGCAGCATACGG 59.904 45.455 22.94 10.38 34.93 4.02
1467 1507 4.779819 CGGCAAGCATGAAGAAGC 57.220 55.556 0.00 0.00 0.00 3.86
1773 1828 4.007644 CACAGCCGGAGCAGGACA 62.008 66.667 5.05 0.00 43.56 4.02
1808 1863 1.421410 CCGAGCGGATGGAGTTTTCG 61.421 60.000 2.00 0.00 37.50 3.46
1818 1873 0.249573 GGAGTTTTCGGACGTGGACA 60.250 55.000 0.00 0.00 0.00 4.02
1967 2031 1.372499 CGACGAGCTTGGGTTCGAA 60.372 57.895 5.79 0.00 46.47 3.71
2016 2098 3.991536 GACAGCCTCTTCGCCGGAC 62.992 68.421 5.05 0.00 0.00 4.79
2294 3477 4.021229 TGATTGCTTCCTTGATGAATGCT 58.979 39.130 0.00 0.00 0.00 3.79
2298 3510 3.380320 TGCTTCCTTGATGAATGCTGATG 59.620 43.478 0.00 0.00 0.00 3.07
2299 3511 3.243434 GCTTCCTTGATGAATGCTGATGG 60.243 47.826 0.00 0.00 0.00 3.51
2300 3512 3.937778 TCCTTGATGAATGCTGATGGA 57.062 42.857 0.00 0.00 0.00 3.41
2301 3513 4.239428 TCCTTGATGAATGCTGATGGAA 57.761 40.909 0.00 0.00 0.00 3.53
2302 3514 4.602107 TCCTTGATGAATGCTGATGGAAA 58.398 39.130 0.00 0.00 0.00 3.13
2303 3515 5.205821 TCCTTGATGAATGCTGATGGAAAT 58.794 37.500 0.00 0.00 0.00 2.17
2305 3517 5.163447 CCTTGATGAATGCTGATGGAAATGT 60.163 40.000 0.00 0.00 0.00 2.71
2306 3518 6.040054 CCTTGATGAATGCTGATGGAAATGTA 59.960 38.462 0.00 0.00 0.00 2.29
2308 3520 7.591421 TGATGAATGCTGATGGAAATGTATT 57.409 32.000 0.00 0.00 0.00 1.89
2309 3521 7.654568 TGATGAATGCTGATGGAAATGTATTC 58.345 34.615 0.00 0.00 33.99 1.75
2310 3522 7.504574 TGATGAATGCTGATGGAAATGTATTCT 59.495 33.333 0.00 0.00 34.32 2.40
2311 3523 8.929260 ATGAATGCTGATGGAAATGTATTCTA 57.071 30.769 0.00 0.00 34.32 2.10
2312 3524 8.158169 TGAATGCTGATGGAAATGTATTCTAC 57.842 34.615 0.00 0.00 34.32 2.59
2315 3527 6.653020 TGCTGATGGAAATGTATTCTACTGT 58.347 36.000 0.00 0.00 0.00 3.55
2316 3528 7.112122 TGCTGATGGAAATGTATTCTACTGTT 58.888 34.615 0.00 0.00 0.00 3.16
2318 3530 7.912250 GCTGATGGAAATGTATTCTACTGTTTG 59.088 37.037 0.00 0.00 0.00 2.93
2319 3531 9.166173 CTGATGGAAATGTATTCTACTGTTTGA 57.834 33.333 0.00 0.00 0.00 2.69
2320 3532 9.166173 TGATGGAAATGTATTCTACTGTTTGAG 57.834 33.333 0.00 0.00 0.00 3.02
2321 3533 9.167311 GATGGAAATGTATTCTACTGTTTGAGT 57.833 33.333 0.00 0.00 38.88 3.41
2322 3534 8.918202 TGGAAATGTATTCTACTGTTTGAGTT 57.082 30.769 0.00 0.00 35.96 3.01
2323 3535 9.349713 TGGAAATGTATTCTACTGTTTGAGTTT 57.650 29.630 0.00 0.00 35.96 2.66
2332 3544 8.428186 TTCTACTGTTTGAGTTTATTGTTCGT 57.572 30.769 0.00 0.00 35.96 3.85
2333 3545 8.068893 TCTACTGTTTGAGTTTATTGTTCGTC 57.931 34.615 0.00 0.00 35.96 4.20
2334 3546 6.671614 ACTGTTTGAGTTTATTGTTCGTCA 57.328 33.333 0.00 0.00 0.00 4.35
2335 3547 6.715464 ACTGTTTGAGTTTATTGTTCGTCAG 58.285 36.000 0.00 0.00 0.00 3.51
2336 3548 6.315393 ACTGTTTGAGTTTATTGTTCGTCAGT 59.685 34.615 0.00 0.00 0.00 3.41
2337 3549 6.711579 TGTTTGAGTTTATTGTTCGTCAGTC 58.288 36.000 0.00 0.00 0.00 3.51
2338 3550 6.314152 TGTTTGAGTTTATTGTTCGTCAGTCA 59.686 34.615 0.00 0.00 0.00 3.41
2339 3551 6.525121 TTGAGTTTATTGTTCGTCAGTCAG 57.475 37.500 0.00 0.00 0.00 3.51
2340 3552 5.838529 TGAGTTTATTGTTCGTCAGTCAGA 58.161 37.500 0.00 0.00 0.00 3.27
2341 3553 5.690409 TGAGTTTATTGTTCGTCAGTCAGAC 59.310 40.000 0.00 0.00 44.02 3.51
2342 3554 4.989168 AGTTTATTGTTCGTCAGTCAGACC 59.011 41.667 0.00 0.00 44.66 3.85
2343 3555 2.457366 ATTGTTCGTCAGTCAGACCC 57.543 50.000 0.00 0.00 44.66 4.46
2344 3556 1.410004 TTGTTCGTCAGTCAGACCCT 58.590 50.000 0.00 0.00 44.66 4.34
2345 3557 0.673985 TGTTCGTCAGTCAGACCCTG 59.326 55.000 0.00 0.00 44.66 4.45
2346 3558 0.667792 GTTCGTCAGTCAGACCCTGC 60.668 60.000 0.00 0.00 44.66 4.85
2347 3559 0.827925 TTCGTCAGTCAGACCCTGCT 60.828 55.000 0.00 0.00 44.66 4.24
2348 3560 1.080230 CGTCAGTCAGACCCTGCTG 60.080 63.158 0.00 10.16 44.66 4.41
2349 3561 1.810606 CGTCAGTCAGACCCTGCTGT 61.811 60.000 0.00 0.00 44.66 4.40
2350 3562 1.257743 GTCAGTCAGACCCTGCTGTA 58.742 55.000 0.00 4.06 41.56 2.74
2351 3563 1.827969 GTCAGTCAGACCCTGCTGTAT 59.172 52.381 0.00 0.00 41.56 2.29
2352 3564 2.234908 GTCAGTCAGACCCTGCTGTATT 59.765 50.000 0.00 0.00 41.56 1.89
2353 3565 2.497675 TCAGTCAGACCCTGCTGTATTC 59.502 50.000 0.00 0.00 37.13 1.75
2354 3566 2.499289 CAGTCAGACCCTGCTGTATTCT 59.501 50.000 0.00 0.00 37.20 2.40
2355 3567 3.701542 CAGTCAGACCCTGCTGTATTCTA 59.298 47.826 0.00 0.00 37.20 2.10
2356 3568 3.702045 AGTCAGACCCTGCTGTATTCTAC 59.298 47.826 0.00 0.00 37.20 2.59
2368 3580 4.142138 GCTGTATTCTACTGTACTGCTGGT 60.142 45.833 0.00 0.00 40.46 4.00
2369 3581 5.067413 GCTGTATTCTACTGTACTGCTGGTA 59.933 44.000 0.00 0.00 40.46 3.25
2402 3635 9.586435 CTGTATTGTACTCTGTCATGATTTGTA 57.414 33.333 0.00 0.00 0.00 2.41
2407 3640 7.258441 TGTACTCTGTCATGATTTGTACTAGC 58.742 38.462 20.84 1.12 32.60 3.42
2412 3645 6.595326 TCTGTCATGATTTGTACTAGCCTTTG 59.405 38.462 0.00 0.00 0.00 2.77
2423 3656 2.084546 CTAGCCTTTGGTACTGTTGGC 58.915 52.381 10.81 10.81 40.54 4.52
2438 3671 2.167693 TGTTGGCCAATAGTCCTACGAG 59.832 50.000 23.66 0.00 32.09 4.18
2453 3686 0.802222 ACGAGTTGATCATGTCGGCG 60.802 55.000 23.60 0.00 36.74 6.46
2468 3701 2.585247 GCGGTGCCGTCTATGGTC 60.585 66.667 12.46 0.00 42.09 4.02
2627 4167 7.859325 TGGGCAGTTGATCTTTACTTAATAC 57.141 36.000 0.00 0.00 0.00 1.89
2630 4170 7.201705 GGGCAGTTGATCTTTACTTAATACCAC 60.202 40.741 0.00 0.00 0.00 4.16
2631 4171 7.553044 GGCAGTTGATCTTTACTTAATACCACT 59.447 37.037 0.00 0.00 0.00 4.00
2659 4200 2.375146 GACTTCAACCTTTGGTGGTGT 58.625 47.619 0.00 0.00 40.73 4.16
2667 4208 1.384525 CTTTGGTGGTGTTCCGTTCA 58.615 50.000 0.00 0.00 36.30 3.18
2670 4211 0.250553 TGGTGGTGTTCCGTTCATCC 60.251 55.000 0.00 0.00 36.30 3.51
2683 4224 1.676529 GTTCATCCTCGGACTCGATCA 59.323 52.381 0.00 0.00 45.04 2.92
2684 4225 2.278332 TCATCCTCGGACTCGATCAT 57.722 50.000 0.00 0.00 45.04 2.45
2685 4226 2.155279 TCATCCTCGGACTCGATCATC 58.845 52.381 0.00 0.00 45.04 2.92
2686 4227 1.201181 CATCCTCGGACTCGATCATCC 59.799 57.143 0.00 0.00 45.04 3.51
2687 4228 0.537600 TCCTCGGACTCGATCATCCC 60.538 60.000 5.24 0.00 45.04 3.85
2689 4230 0.595588 CTCGGACTCGATCATCCCTG 59.404 60.000 5.24 0.00 45.04 4.45
2690 4231 0.182775 TCGGACTCGATCATCCCTGA 59.817 55.000 5.24 0.00 40.88 3.86
2692 4233 1.615883 CGGACTCGATCATCCCTGATT 59.384 52.381 5.24 0.00 42.27 2.57
2696 4237 4.443457 GGACTCGATCATCCCTGATTTTCA 60.443 45.833 0.00 0.00 42.27 2.69
2705 4265 6.985117 TCATCCCTGATTTTCACTTTTTCAG 58.015 36.000 0.00 0.00 34.86 3.02
2730 4290 6.951062 TTTCATGGAAACTGATAACACACA 57.049 33.333 0.00 0.00 0.00 3.72
2788 4348 4.803426 GCCACGTCGCCCTCAGAG 62.803 72.222 0.00 0.00 0.00 3.35
2834 4394 7.023575 CCATGCTCAGACAAACATAAAACTAC 58.976 38.462 0.00 0.00 0.00 2.73
2839 4399 8.507249 GCTCAGACAAACATAAAACTACAGAAT 58.493 33.333 0.00 0.00 0.00 2.40
2905 4525 8.608844 TTCACCTTAGAAATCTTCACTTCTTC 57.391 34.615 0.00 0.00 33.89 2.87
3000 5785 7.809806 GCTGAATTCAGTTAAGCTGTACAATTT 59.190 33.333 30.88 0.00 45.45 1.82
3071 5884 2.525124 AATCTGTGGCGGTGGTCCA 61.525 57.895 0.00 0.00 0.00 4.02
3116 6562 3.325135 AGATCGGGACAAGAATGGGTATC 59.675 47.826 0.00 0.00 0.00 2.24
3149 6595 6.424812 TGATCTGGCACAAACGATATCATAAG 59.575 38.462 3.12 0.00 38.70 1.73
3150 6596 5.670485 TCTGGCACAAACGATATCATAAGT 58.330 37.500 3.12 0.00 38.70 2.24
3239 6710 2.009051 CATAGCAATGCACGGACTTCA 58.991 47.619 8.35 0.00 0.00 3.02
3274 6745 9.176181 TGTCTAAATGTCGCAGAAAAATTAAAC 57.824 29.630 0.00 0.00 39.69 2.01
3280 6751 7.820044 TGTCGCAGAAAAATTAAACAGTTTT 57.180 28.000 3.25 0.00 39.69 2.43
3297 6768 3.850173 AGTTTTAGGGGACTATGCCTGAA 59.150 43.478 0.00 0.00 43.94 3.02
3300 6771 1.972588 AGGGGACTATGCCTGAAACT 58.027 50.000 0.00 0.00 40.61 2.66
3319 6790 7.369607 TGAAACTCCAAATTATCACACATGTG 58.630 34.615 24.25 24.25 46.91 3.21
3340 6812 1.069906 AGTTCAGAAAACGCATGTCGC 60.070 47.619 9.04 0.00 43.23 5.19
3384 6856 9.603921 ATTTTGTATCCTTTAGCCATGATTTTG 57.396 29.630 0.00 0.00 0.00 2.44
3415 6887 4.039124 AGTTTCCCAAATGATGCGAAAACT 59.961 37.500 0.00 0.00 37.51 2.66
3483 6955 4.142071 TGAGCTGCTGAATTGTACTCCTAG 60.142 45.833 7.01 0.00 0.00 3.02
3544 7016 1.934589 TTCTTGTCACGATATGGGCG 58.065 50.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.878599 AAATTAACGACACTTATTTTGAGACAG 57.121 29.630 0.00 0.00 0.00 3.51
52 53 4.322953 CCCTCCATCCCAAAATCAAAGTTG 60.323 45.833 0.00 0.00 0.00 3.16
66 67 4.902448 AGTAATCAAGTACTCCCTCCATCC 59.098 45.833 0.00 0.00 27.56 3.51
99 100 1.947642 GAAGTGACGTCGCACCGTT 60.948 57.895 29.21 15.58 41.98 4.44
101 102 2.050351 AGAAGTGACGTCGCACCG 60.050 61.111 29.21 0.00 39.59 4.94
103 104 0.778815 CTTGAGAAGTGACGTCGCAC 59.221 55.000 29.21 21.49 39.05 5.34
110 111 8.180267 CCATTGATTGATTACTTGAGAAGTGAC 58.820 37.037 0.00 0.00 42.84 3.67
116 117 9.904198 TTGATACCATTGATTGATTACTTGAGA 57.096 29.630 0.00 0.00 0.00 3.27
128 129 5.714863 TGGGCCTAATTGATACCATTGATT 58.285 37.500 4.53 0.00 0.00 2.57
129 130 5.337956 TGGGCCTAATTGATACCATTGAT 57.662 39.130 4.53 0.00 0.00 2.57
176 177 0.532862 AAGGACGACCACTTGTGCTG 60.533 55.000 6.71 0.00 36.84 4.41
178 179 0.586802 GAAAGGACGACCACTTGTGC 59.413 55.000 6.71 0.00 38.94 4.57
179 180 0.859232 CGAAAGGACGACCACTTGTG 59.141 55.000 6.71 0.00 38.94 3.33
189 190 3.982058 GCTTAGATATCCACGAAAGGACG 59.018 47.826 0.00 0.00 41.30 4.79
198 199 7.717568 TCTAGTGACAAAGCTTAGATATCCAC 58.282 38.462 0.00 1.98 0.00 4.02
213 214 3.244526 TGGCTTTGATGCTCTAGTGACAA 60.245 43.478 0.00 0.00 0.00 3.18
229 230 1.133482 ACTTGCTACCCACTTGGCTTT 60.133 47.619 0.00 0.00 37.83 3.51
287 289 2.030185 ACCAAGTACTCACTACACGCAG 60.030 50.000 0.00 0.00 33.48 5.18
346 348 3.439857 AGTGTTATTGTGGTGCATCCT 57.560 42.857 0.00 0.00 37.07 3.24
384 386 3.628032 GCCAGCCTCAAGGTTCTTATTAC 59.372 47.826 0.00 0.00 37.57 1.89
404 406 0.173255 GCCACACCATACACAATGCC 59.827 55.000 0.00 0.00 33.92 4.40
427 429 7.303998 AGTTACACTTAGTTACGTGAGATGTC 58.696 38.462 0.00 0.00 35.03 3.06
428 430 7.211966 AGTTACACTTAGTTACGTGAGATGT 57.788 36.000 0.00 0.00 35.03 3.06
430 432 9.837525 CTTAAGTTACACTTAGTTACGTGAGAT 57.162 33.333 0.00 0.00 41.23 2.75
432 434 8.899776 CACTTAAGTTACACTTAGTTACGTGAG 58.100 37.037 5.07 0.00 41.23 3.51
433 435 8.620416 TCACTTAAGTTACACTTAGTTACGTGA 58.380 33.333 5.07 0.00 41.23 4.35
434 436 8.685536 GTCACTTAAGTTACACTTAGTTACGTG 58.314 37.037 13.82 0.00 41.23 4.49
435 437 8.405531 TGTCACTTAAGTTACACTTAGTTACGT 58.594 33.333 16.78 0.00 41.23 3.57
436 438 8.786937 TGTCACTTAAGTTACACTTAGTTACG 57.213 34.615 16.78 0.00 41.23 3.18
480 492 9.226606 TCTTACGTGGAGATTCATGTAATTTTT 57.773 29.630 6.42 0.00 43.73 1.94
487 499 5.360999 TGAGATCTTACGTGGAGATTCATGT 59.639 40.000 14.87 0.00 39.81 3.21
490 502 5.594317 TCATGAGATCTTACGTGGAGATTCA 59.406 40.000 14.87 17.19 34.13 2.57
497 509 9.645059 ATGTTATATTCATGAGATCTTACGTGG 57.355 33.333 0.00 0.00 0.00 4.94
500 512 9.860898 TCCATGTTATATTCATGAGATCTTACG 57.139 33.333 16.84 0.00 43.47 3.18
518 530 2.253610 ACCAAGTCCGAGTCCATGTTA 58.746 47.619 0.00 0.00 0.00 2.41
524 536 4.182339 GAGATTTAACCAAGTCCGAGTCC 58.818 47.826 0.00 0.00 0.00 3.85
528 540 4.562757 CCACTGAGATTTAACCAAGTCCGA 60.563 45.833 0.00 0.00 0.00 4.55
529 541 3.684788 CCACTGAGATTTAACCAAGTCCG 59.315 47.826 0.00 0.00 0.00 4.79
530 542 4.652822 ACCACTGAGATTTAACCAAGTCC 58.347 43.478 0.00 0.00 0.00 3.85
536 548 3.604875 TCGGACCACTGAGATTTAACC 57.395 47.619 0.00 0.00 0.00 2.85
545 557 1.375908 GCATTGCTCGGACCACTGA 60.376 57.895 0.16 0.00 0.00 3.41
546 558 0.108186 TAGCATTGCTCGGACCACTG 60.108 55.000 15.81 0.00 40.44 3.66
547 559 0.108138 GTAGCATTGCTCGGACCACT 60.108 55.000 15.81 0.00 40.44 4.00
548 560 0.391130 TGTAGCATTGCTCGGACCAC 60.391 55.000 15.81 7.23 40.44 4.16
549 561 0.391130 GTGTAGCATTGCTCGGACCA 60.391 55.000 15.81 2.86 40.44 4.02
550 562 1.090052 GGTGTAGCATTGCTCGGACC 61.090 60.000 15.81 14.97 40.44 4.46
551 563 0.108138 AGGTGTAGCATTGCTCGGAC 60.108 55.000 15.81 8.76 40.44 4.79
552 564 1.136305 GTAGGTGTAGCATTGCTCGGA 59.864 52.381 15.81 0.00 40.44 4.55
553 565 1.571919 GTAGGTGTAGCATTGCTCGG 58.428 55.000 15.81 0.00 40.44 4.63
554 566 1.200483 CGTAGGTGTAGCATTGCTCG 58.800 55.000 15.81 6.85 40.44 5.03
555 567 2.295253 ACGTAGGTGTAGCATTGCTC 57.705 50.000 15.81 7.72 40.44 4.26
556 568 3.438297 CTACGTAGGTGTAGCATTGCT 57.562 47.619 16.63 16.63 43.41 3.91
563 575 6.532311 CGTATAGATTGCTACGTAGGTGTAG 58.468 44.000 23.47 0.07 43.76 2.74
564 576 6.471976 CGTATAGATTGCTACGTAGGTGTA 57.528 41.667 23.47 0.00 36.77 2.90
565 577 5.354054 CGTATAGATTGCTACGTAGGTGT 57.646 43.478 23.47 0.00 36.77 4.16
615 627 5.083821 CCCCTGATTTCCTCTAACCAAAAA 58.916 41.667 0.00 0.00 0.00 1.94
616 628 4.355588 TCCCCTGATTTCCTCTAACCAAAA 59.644 41.667 0.00 0.00 0.00 2.44
617 629 3.920197 TCCCCTGATTTCCTCTAACCAAA 59.080 43.478 0.00 0.00 0.00 3.28
618 630 3.523564 CTCCCCTGATTTCCTCTAACCAA 59.476 47.826 0.00 0.00 0.00 3.67
619 631 3.115390 CTCCCCTGATTTCCTCTAACCA 58.885 50.000 0.00 0.00 0.00 3.67
620 632 2.439880 CCTCCCCTGATTTCCTCTAACC 59.560 54.545 0.00 0.00 0.00 2.85
621 633 2.439880 CCCTCCCCTGATTTCCTCTAAC 59.560 54.545 0.00 0.00 0.00 2.34
622 634 2.632360 CCCCTCCCCTGATTTCCTCTAA 60.632 54.545 0.00 0.00 0.00 2.10
623 635 1.061346 CCCCTCCCCTGATTTCCTCTA 60.061 57.143 0.00 0.00 0.00 2.43
624 636 0.327964 CCCCTCCCCTGATTTCCTCT 60.328 60.000 0.00 0.00 0.00 3.69
625 637 1.356494 CCCCCTCCCCTGATTTCCTC 61.356 65.000 0.00 0.00 0.00 3.71
626 638 1.309102 CCCCCTCCCCTGATTTCCT 60.309 63.158 0.00 0.00 0.00 3.36
627 639 3.074907 GCCCCCTCCCCTGATTTCC 62.075 68.421 0.00 0.00 0.00 3.13
628 640 2.603580 GCCCCCTCCCCTGATTTC 59.396 66.667 0.00 0.00 0.00 2.17
629 641 3.029981 GGCCCCCTCCCCTGATTT 61.030 66.667 0.00 0.00 0.00 2.17
643 655 1.306911 ATTTCAATGGGGTGGGGCC 60.307 57.895 0.00 0.00 0.00 5.80
644 656 0.617249 TGATTTCAATGGGGTGGGGC 60.617 55.000 0.00 0.00 0.00 5.80
645 657 1.488390 CTGATTTCAATGGGGTGGGG 58.512 55.000 0.00 0.00 0.00 4.96
646 658 1.488390 CCTGATTTCAATGGGGTGGG 58.512 55.000 0.00 0.00 0.00 4.61
647 659 1.488390 CCCTGATTTCAATGGGGTGG 58.512 55.000 0.00 0.00 36.15 4.61
651 663 1.394266 CGCCCCCTGATTTCAATGGG 61.394 60.000 8.90 8.90 38.87 4.00
652 664 1.394266 CCGCCCCCTGATTTCAATGG 61.394 60.000 0.00 0.00 0.00 3.16
653 665 0.684153 ACCGCCCCCTGATTTCAATG 60.684 55.000 0.00 0.00 0.00 2.82
654 666 0.684153 CACCGCCCCCTGATTTCAAT 60.684 55.000 0.00 0.00 0.00 2.57
655 667 1.304052 CACCGCCCCCTGATTTCAA 60.304 57.895 0.00 0.00 0.00 2.69
656 668 2.354729 CACCGCCCCCTGATTTCA 59.645 61.111 0.00 0.00 0.00 2.69
657 669 2.440247 CCACCGCCCCCTGATTTC 60.440 66.667 0.00 0.00 0.00 2.17
658 670 2.499303 CTTCCACCGCCCCCTGATTT 62.499 60.000 0.00 0.00 0.00 2.17
659 671 2.938798 TTCCACCGCCCCCTGATT 60.939 61.111 0.00 0.00 0.00 2.57
660 672 3.411517 CTTCCACCGCCCCCTGAT 61.412 66.667 0.00 0.00 0.00 2.90
663 675 2.850851 TAATCCTTCCACCGCCCCCT 62.851 60.000 0.00 0.00 0.00 4.79
664 676 2.339275 CTAATCCTTCCACCGCCCCC 62.339 65.000 0.00 0.00 0.00 5.40
665 677 1.148498 CTAATCCTTCCACCGCCCC 59.852 63.158 0.00 0.00 0.00 5.80
666 678 0.255033 AACTAATCCTTCCACCGCCC 59.745 55.000 0.00 0.00 0.00 6.13
667 679 2.484947 CCTAACTAATCCTTCCACCGCC 60.485 54.545 0.00 0.00 0.00 6.13
668 680 2.484947 CCCTAACTAATCCTTCCACCGC 60.485 54.545 0.00 0.00 0.00 5.68
669 681 3.036091 TCCCTAACTAATCCTTCCACCG 58.964 50.000 0.00 0.00 0.00 4.94
670 682 3.391626 CCTCCCTAACTAATCCTTCCACC 59.608 52.174 0.00 0.00 0.00 4.61
671 683 4.038633 ACCTCCCTAACTAATCCTTCCAC 58.961 47.826 0.00 0.00 0.00 4.02
672 684 4.363546 ACCTCCCTAACTAATCCTTCCA 57.636 45.455 0.00 0.00 0.00 3.53
673 685 5.682659 GAAACCTCCCTAACTAATCCTTCC 58.317 45.833 0.00 0.00 0.00 3.46
674 686 5.105023 ACGAAACCTCCCTAACTAATCCTTC 60.105 44.000 0.00 0.00 0.00 3.46
675 687 4.781621 ACGAAACCTCCCTAACTAATCCTT 59.218 41.667 0.00 0.00 0.00 3.36
676 688 4.359996 ACGAAACCTCCCTAACTAATCCT 58.640 43.478 0.00 0.00 0.00 3.24
677 689 4.750021 ACGAAACCTCCCTAACTAATCC 57.250 45.455 0.00 0.00 0.00 3.01
678 690 7.105241 TCTTACGAAACCTCCCTAACTAATC 57.895 40.000 0.00 0.00 0.00 1.75
679 691 7.672122 ATCTTACGAAACCTCCCTAACTAAT 57.328 36.000 0.00 0.00 0.00 1.73
680 692 7.486407 AATCTTACGAAACCTCCCTAACTAA 57.514 36.000 0.00 0.00 0.00 2.24
681 693 8.000780 GTAATCTTACGAAACCTCCCTAACTA 57.999 38.462 0.00 0.00 0.00 2.24
682 694 6.871844 GTAATCTTACGAAACCTCCCTAACT 58.128 40.000 0.00 0.00 0.00 2.24
697 709 9.189723 CCTACATAAAAGCCTACGTAATCTTAC 57.810 37.037 8.77 0.00 0.00 2.34
698 710 8.917088 ACCTACATAAAAGCCTACGTAATCTTA 58.083 33.333 8.77 0.00 0.00 2.10
699 711 7.709613 CACCTACATAAAAGCCTACGTAATCTT 59.290 37.037 0.00 0.00 0.00 2.40
700 712 7.147776 ACACCTACATAAAAGCCTACGTAATCT 60.148 37.037 0.00 0.00 0.00 2.40
701 713 6.982724 ACACCTACATAAAAGCCTACGTAATC 59.017 38.462 0.00 0.00 0.00 1.75
702 714 6.881570 ACACCTACATAAAAGCCTACGTAAT 58.118 36.000 0.00 0.00 0.00 1.89
703 715 6.284891 ACACCTACATAAAAGCCTACGTAA 57.715 37.500 0.00 0.00 0.00 3.18
704 716 5.920193 ACACCTACATAAAAGCCTACGTA 57.080 39.130 0.00 0.00 0.00 3.57
705 717 4.813750 ACACCTACATAAAAGCCTACGT 57.186 40.909 0.00 0.00 0.00 3.57
706 718 4.743644 GCTACACCTACATAAAAGCCTACG 59.256 45.833 0.00 0.00 0.00 3.51
707 719 5.667466 TGCTACACCTACATAAAAGCCTAC 58.333 41.667 0.00 0.00 0.00 3.18
708 720 5.943349 TGCTACACCTACATAAAAGCCTA 57.057 39.130 0.00 0.00 0.00 3.93
709 721 4.837093 TGCTACACCTACATAAAAGCCT 57.163 40.909 0.00 0.00 0.00 4.58
710 722 6.451064 AAATGCTACACCTACATAAAAGCC 57.549 37.500 0.00 0.00 0.00 4.35
711 723 7.275560 CCAAAAATGCTACACCTACATAAAAGC 59.724 37.037 0.00 0.00 0.00 3.51
712 724 7.759433 CCCAAAAATGCTACACCTACATAAAAG 59.241 37.037 0.00 0.00 0.00 2.27
713 725 7.607250 CCCAAAAATGCTACACCTACATAAAA 58.393 34.615 0.00 0.00 0.00 1.52
714 726 6.350612 GCCCAAAAATGCTACACCTACATAAA 60.351 38.462 0.00 0.00 0.00 1.40
715 727 5.126384 GCCCAAAAATGCTACACCTACATAA 59.874 40.000 0.00 0.00 0.00 1.90
716 728 4.642885 GCCCAAAAATGCTACACCTACATA 59.357 41.667 0.00 0.00 0.00 2.29
717 729 3.447229 GCCCAAAAATGCTACACCTACAT 59.553 43.478 0.00 0.00 0.00 2.29
718 730 2.823154 GCCCAAAAATGCTACACCTACA 59.177 45.455 0.00 0.00 0.00 2.74
719 731 3.089284 AGCCCAAAAATGCTACACCTAC 58.911 45.455 0.00 0.00 35.69 3.18
720 732 3.088532 CAGCCCAAAAATGCTACACCTA 58.911 45.455 0.00 0.00 35.69 3.08
721 733 1.895131 CAGCCCAAAAATGCTACACCT 59.105 47.619 0.00 0.00 35.69 4.00
722 734 1.892474 TCAGCCCAAAAATGCTACACC 59.108 47.619 0.00 0.00 35.69 4.16
723 735 2.819608 TCTCAGCCCAAAAATGCTACAC 59.180 45.455 0.00 0.00 35.69 2.90
724 736 3.153369 TCTCAGCCCAAAAATGCTACA 57.847 42.857 0.00 0.00 35.69 2.74
725 737 4.725790 AATCTCAGCCCAAAAATGCTAC 57.274 40.909 0.00 0.00 35.69 3.58
726 738 5.163519 GCTAAATCTCAGCCCAAAAATGCTA 60.164 40.000 0.00 0.00 35.69 3.49
727 739 4.382362 GCTAAATCTCAGCCCAAAAATGCT 60.382 41.667 0.00 0.00 38.67 3.79
728 740 3.867493 GCTAAATCTCAGCCCAAAAATGC 59.133 43.478 0.00 0.00 32.68 3.56
729 741 5.075858 TGCTAAATCTCAGCCCAAAAATG 57.924 39.130 0.00 0.00 38.29 2.32
730 742 5.743636 TTGCTAAATCTCAGCCCAAAAAT 57.256 34.783 0.00 0.00 38.29 1.82
731 743 5.723295 GATTGCTAAATCTCAGCCCAAAAA 58.277 37.500 0.00 0.00 39.36 1.94
732 744 5.329035 GATTGCTAAATCTCAGCCCAAAA 57.671 39.130 0.00 0.00 39.36 2.44
733 745 4.989279 GATTGCTAAATCTCAGCCCAAA 57.011 40.909 0.00 0.00 39.36 3.28
751 763 5.105716 CGGGATCCTATACACAATCGAGATT 60.106 44.000 12.58 0.00 0.00 2.40
756 768 2.607187 GCGGGATCCTATACACAATCG 58.393 52.381 12.58 3.48 0.00 3.34
761 773 1.199558 GTCTCGCGGGATCCTATACAC 59.800 57.143 14.04 0.00 0.00 2.90
762 774 1.202842 TGTCTCGCGGGATCCTATACA 60.203 52.381 14.04 0.00 0.00 2.29
777 789 0.524862 CAGGGCATGCACTTTGTCTC 59.475 55.000 22.79 0.00 0.00 3.36
817 829 3.055591 GACATGACAGATCTATGTGGCG 58.944 50.000 13.19 0.00 35.35 5.69
823 835 6.071447 GCTACTGGATGACATGACAGATCTAT 60.071 42.308 18.67 0.00 35.08 1.98
843 855 1.270147 GGAACACAACGGTCAGCTACT 60.270 52.381 0.00 0.00 0.00 2.57
845 857 1.045407 AGGAACACAACGGTCAGCTA 58.955 50.000 0.00 0.00 0.00 3.32
1121 1151 1.679898 CCTTTCTTGGACGAGGCCT 59.320 57.895 3.86 3.86 0.00 5.19
1129 1159 0.677731 CTCATGCCGCCTTTCTTGGA 60.678 55.000 0.00 0.00 0.00 3.53
1137 1167 2.124819 CTCTTGCTCATGCCGCCT 60.125 61.111 4.67 0.00 38.71 5.52
1283 1316 1.572415 TGAGAGTTACCCTACCCGGAT 59.428 52.381 0.73 0.00 33.16 4.18
1303 1342 5.728637 TGATTGCATACTCGATGGACTAT 57.271 39.130 0.00 0.00 35.29 2.12
1305 1344 4.039609 TCATGATTGCATACTCGATGGACT 59.960 41.667 0.00 0.00 35.29 3.85
1308 1347 5.678132 TTTCATGATTGCATACTCGATGG 57.322 39.130 0.00 0.00 35.91 3.51
1309 1348 9.274065 CATTATTTCATGATTGCATACTCGATG 57.726 33.333 0.00 0.00 38.73 3.84
1310 1349 9.006839 ACATTATTTCATGATTGCATACTCGAT 57.993 29.630 0.00 0.00 32.27 3.59
1311 1350 8.382030 ACATTATTTCATGATTGCATACTCGA 57.618 30.769 0.00 0.00 32.27 4.04
1312 1351 9.110617 GAACATTATTTCATGATTGCATACTCG 57.889 33.333 0.00 0.00 32.27 4.18
1313 1352 9.955208 TGAACATTATTTCATGATTGCATACTC 57.045 29.630 0.00 0.00 32.27 2.59
1316 1355 9.615295 CGATGAACATTATTTCATGATTGCATA 57.385 29.630 0.00 0.00 44.59 3.14
1317 1356 8.354426 TCGATGAACATTATTTCATGATTGCAT 58.646 29.630 0.00 0.00 44.59 3.96
1318 1357 7.644945 GTCGATGAACATTATTTCATGATTGCA 59.355 33.333 0.00 0.00 44.59 4.08
1319 1358 7.149240 CGTCGATGAACATTATTTCATGATTGC 60.149 37.037 0.00 0.00 44.59 3.56
1331 1370 6.309494 CCAAGAACTAACGTCGATGAACATTA 59.691 38.462 12.58 0.00 0.00 1.90
1336 1375 3.006110 ACCCAAGAACTAACGTCGATGAA 59.994 43.478 12.58 0.00 0.00 2.57
1343 1382 1.337167 GGCGTACCCAAGAACTAACGT 60.337 52.381 0.00 0.00 33.16 3.99
1361 1400 0.457337 CACCTAAGTACGTGACGGGC 60.457 60.000 10.66 0.94 31.36 6.13
1363 1402 1.167851 TCCACCTAAGTACGTGACGG 58.832 55.000 10.66 0.00 31.36 4.79
1367 1406 5.470777 TCCAAATTTTCCACCTAAGTACGTG 59.529 40.000 0.00 0.00 0.00 4.49
1387 1427 5.814188 CGAATCTCATCAGTCTTTCATCCAA 59.186 40.000 0.00 0.00 0.00 3.53
1395 1435 4.756642 TGCAAAACGAATCTCATCAGTCTT 59.243 37.500 0.00 0.00 0.00 3.01
1396 1436 4.318332 TGCAAAACGAATCTCATCAGTCT 58.682 39.130 0.00 0.00 0.00 3.24
1454 1494 1.639298 GGACGCGCTTCTTCATGCTT 61.639 55.000 14.02 0.00 0.00 3.91
1459 1499 2.261671 GGAGGACGCGCTTCTTCA 59.738 61.111 24.02 0.00 0.00 3.02
1818 1873 1.299620 CGGTCAGGTCAACGAACGT 60.300 57.895 0.00 0.00 37.56 3.99
1967 2031 2.859165 ACTGGAACATCATGAACGGT 57.141 45.000 0.00 0.00 38.20 4.83
2016 2098 1.884464 CATCCTGGATGACGGCGTG 60.884 63.158 28.81 0.38 42.09 5.34
2131 2222 5.401972 TCTTACAAACGATCGAGCGTAAAAA 59.598 36.000 30.35 18.70 44.86 1.94
2132 2223 4.916831 TCTTACAAACGATCGAGCGTAAAA 59.083 37.500 30.35 18.37 44.86 1.52
2133 2224 4.475028 TCTTACAAACGATCGAGCGTAAA 58.525 39.130 30.35 18.70 44.86 2.01
2134 2225 4.082274 TCTTACAAACGATCGAGCGTAA 57.918 40.909 30.35 18.32 44.86 3.18
2135 2226 3.745332 TCTTACAAACGATCGAGCGTA 57.255 42.857 30.35 11.13 44.86 4.42
2147 2238 5.178096 TGCCAGATGGAGATTCTTACAAA 57.822 39.130 2.18 0.00 37.39 2.83
2294 3477 9.166173 CTCAAACAGTAGAATACATTTCCATCA 57.834 33.333 0.00 0.00 46.26 3.07
2306 3518 9.052759 ACGAACAATAAACTCAAACAGTAGAAT 57.947 29.630 0.00 0.00 32.30 2.40
2308 3520 7.707464 TGACGAACAATAAACTCAAACAGTAGA 59.293 33.333 0.00 0.00 32.30 2.59
2309 3521 7.847487 TGACGAACAATAAACTCAAACAGTAG 58.153 34.615 0.00 0.00 32.30 2.57
2310 3522 7.493320 ACTGACGAACAATAAACTCAAACAGTA 59.507 33.333 0.00 0.00 32.30 2.74
2311 3523 6.315393 ACTGACGAACAATAAACTCAAACAGT 59.685 34.615 0.00 0.00 36.64 3.55
2312 3524 6.715464 ACTGACGAACAATAAACTCAAACAG 58.285 36.000 0.00 0.00 0.00 3.16
2315 3527 6.759356 TCTGACTGACGAACAATAAACTCAAA 59.241 34.615 0.00 0.00 0.00 2.69
2316 3528 6.200286 GTCTGACTGACGAACAATAAACTCAA 59.800 38.462 0.00 0.00 35.81 3.02
2318 3530 5.118817 GGTCTGACTGACGAACAATAAACTC 59.881 44.000 7.85 0.00 46.24 3.01
2319 3531 4.989168 GGTCTGACTGACGAACAATAAACT 59.011 41.667 7.85 0.00 46.24 2.66
2320 3532 4.151867 GGGTCTGACTGACGAACAATAAAC 59.848 45.833 7.85 0.00 46.24 2.01
2321 3533 4.039973 AGGGTCTGACTGACGAACAATAAA 59.960 41.667 7.85 0.00 46.24 1.40
2322 3534 3.576982 AGGGTCTGACTGACGAACAATAA 59.423 43.478 7.85 0.00 46.24 1.40
2323 3535 3.056821 CAGGGTCTGACTGACGAACAATA 60.057 47.826 7.85 0.00 46.24 1.90
2324 3536 1.971357 AGGGTCTGACTGACGAACAAT 59.029 47.619 7.85 0.00 46.24 2.71
2325 3537 1.068588 CAGGGTCTGACTGACGAACAA 59.931 52.381 7.85 0.00 46.24 2.83
2326 3538 0.673985 CAGGGTCTGACTGACGAACA 59.326 55.000 7.85 0.00 46.24 3.18
2327 3539 0.667792 GCAGGGTCTGACTGACGAAC 60.668 60.000 7.85 0.61 46.24 3.95
2328 3540 0.827925 AGCAGGGTCTGACTGACGAA 60.828 55.000 7.85 0.00 46.24 3.85
2329 3541 1.228583 AGCAGGGTCTGACTGACGA 60.229 57.895 7.85 0.00 46.24 4.20
2330 3542 1.080230 CAGCAGGGTCTGACTGACG 60.080 63.158 7.85 0.00 46.24 4.35
2331 3543 1.257743 TACAGCAGGGTCTGACTGAC 58.742 55.000 18.67 3.98 44.63 3.51
2332 3544 2.238084 ATACAGCAGGGTCTGACTGA 57.762 50.000 18.67 8.69 38.23 3.41
2333 3545 2.499289 AGAATACAGCAGGGTCTGACTG 59.501 50.000 7.85 13.59 39.57 3.51
2334 3546 2.826488 AGAATACAGCAGGGTCTGACT 58.174 47.619 7.85 0.00 37.51 3.41
2335 3547 3.702045 AGTAGAATACAGCAGGGTCTGAC 59.298 47.826 0.00 0.00 46.26 3.51
2336 3548 3.701542 CAGTAGAATACAGCAGGGTCTGA 59.298 47.826 0.00 0.00 46.26 3.27
2337 3549 3.449018 ACAGTAGAATACAGCAGGGTCTG 59.551 47.826 0.00 0.00 46.26 3.51
2338 3550 3.714144 ACAGTAGAATACAGCAGGGTCT 58.286 45.455 0.00 0.00 46.26 3.85
2339 3551 4.645588 AGTACAGTAGAATACAGCAGGGTC 59.354 45.833 0.00 0.00 46.26 4.46
2340 3552 4.402793 CAGTACAGTAGAATACAGCAGGGT 59.597 45.833 0.00 0.00 46.26 4.34
2341 3553 4.737946 GCAGTACAGTAGAATACAGCAGGG 60.738 50.000 0.00 0.00 46.26 4.45
2342 3554 4.098654 AGCAGTACAGTAGAATACAGCAGG 59.901 45.833 0.00 0.00 46.26 4.85
2343 3555 5.039984 CAGCAGTACAGTAGAATACAGCAG 58.960 45.833 0.00 0.00 46.26 4.24
2344 3556 4.142160 CCAGCAGTACAGTAGAATACAGCA 60.142 45.833 0.00 0.00 46.26 4.41
2345 3557 4.142138 ACCAGCAGTACAGTAGAATACAGC 60.142 45.833 0.00 0.00 46.26 4.40
2346 3558 5.584253 ACCAGCAGTACAGTAGAATACAG 57.416 43.478 0.00 0.00 46.26 2.74
2368 3580 7.728148 TGACAGAGTACAATACAGTTTTGGTA 58.272 34.615 8.41 0.00 0.00 3.25
2369 3581 6.588204 TGACAGAGTACAATACAGTTTTGGT 58.412 36.000 8.41 0.00 0.00 3.67
2370 3582 7.387673 TCATGACAGAGTACAATACAGTTTTGG 59.612 37.037 8.41 0.00 0.00 3.28
2372 3584 9.507329 AATCATGACAGAGTACAATACAGTTTT 57.493 29.630 0.00 0.00 0.00 2.43
2402 3635 2.552373 GCCAACAGTACCAAAGGCTAGT 60.552 50.000 9.11 0.00 39.02 2.57
2407 3640 1.698506 TTGGCCAACAGTACCAAAGG 58.301 50.000 16.05 0.00 40.42 3.11
2412 3645 2.238898 AGGACTATTGGCCAACAGTACC 59.761 50.000 31.46 28.13 28.93 3.34
2423 3656 5.515797 TGATCAACTCGTAGGACTATTGG 57.484 43.478 0.00 0.00 0.00 3.16
2438 3671 1.715585 CACCGCCGACATGATCAAC 59.284 57.895 0.00 0.00 0.00 3.18
2453 3686 1.518572 CACGACCATAGACGGCACC 60.519 63.158 0.00 0.00 35.40 5.01
2466 3699 2.697431 TTAACAATGGCAAGCACGAC 57.303 45.000 0.00 0.00 0.00 4.34
2468 3701 1.655099 GCATTAACAATGGCAAGCACG 59.345 47.619 0.00 0.00 39.31 5.34
2541 3782 6.748333 ACATAATCCAACTCAACATGACAG 57.252 37.500 0.00 0.00 0.00 3.51
2598 4114 5.079643 AGTAAAGATCAACTGCCCATTGTT 58.920 37.500 0.00 0.00 0.00 2.83
2602 4142 7.502561 GGTATTAAGTAAAGATCAACTGCCCAT 59.497 37.037 0.00 0.00 0.00 4.00
2627 4167 7.499232 CCAAAGGTTGAAGTCCTTATATAGTGG 59.501 40.741 0.00 0.00 43.50 4.00
2630 4170 7.499232 CCACCAAAGGTTGAAGTCCTTATATAG 59.501 40.741 0.00 0.00 43.50 1.31
2631 4171 7.037153 ACCACCAAAGGTTGAAGTCCTTATATA 60.037 37.037 0.00 0.00 43.50 0.86
2641 4182 2.100749 GGAACACCACCAAAGGTTGAAG 59.899 50.000 0.00 0.00 40.77 3.02
2683 4224 6.983906 ACTGAAAAAGTGAAAATCAGGGAT 57.016 33.333 6.11 0.00 41.34 3.85
2684 4225 6.790232 AACTGAAAAAGTGAAAATCAGGGA 57.210 33.333 6.11 0.00 41.34 4.20
2685 4226 7.548780 TGAAAACTGAAAAAGTGAAAATCAGGG 59.451 33.333 6.11 0.00 41.34 4.45
2686 4227 8.477984 TGAAAACTGAAAAAGTGAAAATCAGG 57.522 30.769 6.11 0.00 41.34 3.86
2687 4228 9.910511 CATGAAAACTGAAAAAGTGAAAATCAG 57.089 29.630 0.00 0.00 39.81 2.90
2689 4230 9.097257 TCCATGAAAACTGAAAAAGTGAAAATC 57.903 29.630 0.00 0.00 39.81 2.17
2690 4231 9.447157 TTCCATGAAAACTGAAAAAGTGAAAAT 57.553 25.926 0.00 0.00 39.81 1.82
2692 4233 8.716909 GTTTCCATGAAAACTGAAAAAGTGAAA 58.283 29.630 0.00 0.00 39.81 2.69
2705 4265 7.199766 TGTGTGTTATCAGTTTCCATGAAAAC 58.800 34.615 0.00 0.00 39.03 2.43
2730 4290 3.933861 ACCTGTTTTGAACCTGAGACT 57.066 42.857 0.00 0.00 0.00 3.24
2785 4345 4.008330 CTGTGGAGAATTGCATGTTCTCT 58.992 43.478 27.59 11.08 46.78 3.10
2788 4348 2.416431 GGCTGTGGAGAATTGCATGTTC 60.416 50.000 0.00 4.62 0.00 3.18
2846 4406 8.768501 TGTTAGTTCTGTAGTGGATGATAGAT 57.231 34.615 0.00 0.00 0.00 1.98
2905 4525 3.995199 AGGTGACACATACACACAAGAG 58.005 45.455 8.08 0.00 39.65 2.85
3000 5785 3.188254 CACAATGTAGCGAACACATCCAA 59.812 43.478 0.00 0.00 42.09 3.53
3030 5822 9.930693 GATTGACATCTTTATAGTAGGTAAGGG 57.069 37.037 0.00 0.00 0.00 3.95
3071 5884 4.687464 GGGATCCGACGTGTGTTT 57.313 55.556 5.45 0.00 0.00 2.83
3116 6562 4.672542 CGTTTGTGCCAGATCAAACCATAG 60.673 45.833 12.82 0.00 45.77 2.23
3220 6691 2.009774 GTGAAGTCCGTGCATTGCTAT 58.990 47.619 10.49 0.00 0.00 2.97
3239 6710 4.201980 TGCGACATTTAGACATACTAGCGT 60.202 41.667 0.00 0.00 32.30 5.07
3274 6745 3.199946 TCAGGCATAGTCCCCTAAAACTG 59.800 47.826 0.00 0.00 0.00 3.16
3280 6751 3.039011 GAGTTTCAGGCATAGTCCCCTA 58.961 50.000 0.00 0.00 0.00 3.53
3319 6790 2.827555 CGACATGCGTTTTCTGAACTC 58.172 47.619 0.00 0.00 34.64 3.01
3340 6812 7.810766 ACAAAATTATTTACAAGATGTGGCG 57.189 32.000 0.00 0.00 0.00 5.69
3371 6843 0.754957 CCCCGGCAAAATCATGGCTA 60.755 55.000 0.00 0.00 43.23 3.93
3402 6874 0.729116 CGAGGCAGTTTTCGCATCAT 59.271 50.000 0.00 0.00 40.08 2.45
3432 6904 2.496291 CCGGTAGCCCCTAGGTTCG 61.496 68.421 8.29 2.26 34.57 3.95
3483 6955 5.351458 CAAATTGCAGCCTAAAATAGGGAC 58.649 41.667 5.62 0.00 46.32 4.46
3533 7005 1.227263 GCTGTCACGCCCATATCGT 60.227 57.895 0.00 0.00 41.28 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.