Multiple sequence alignment - TraesCS4B01G298400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G298400 chr4B 100.000 4808 0 0 1 4808 584053556 584058363 0.000000e+00 8879.0
1 TraesCS4B01G298400 chr4B 97.947 3800 50 9 41 3821 584124945 584128735 0.000000e+00 6560.0
2 TraesCS4B01G298400 chr4B 86.253 1804 121 61 690 2451 583765344 583767062 0.000000e+00 1840.0
3 TraesCS4B01G298400 chr4B 90.608 1267 81 20 2613 3863 583767406 583768650 0.000000e+00 1646.0
4 TraesCS4B01G298400 chr4B 88.663 935 92 12 928 1855 584872324 584873251 0.000000e+00 1127.0
5 TraesCS4B01G298400 chr4B 88.663 935 92 12 928 1855 584897704 584898631 0.000000e+00 1127.0
6 TraesCS4B01G298400 chr4B 88.556 935 93 12 928 1855 584847031 584847958 0.000000e+00 1122.0
7 TraesCS4B01G298400 chr4B 84.030 670 94 7 4142 4806 583768652 583769313 2.440000e-177 632.0
8 TraesCS4B01G298400 chr4B 95.775 284 11 1 3862 4145 588581635 588581917 1.580000e-124 457.0
9 TraesCS4B01G298400 chr4B 95.439 285 13 0 3862 4146 588549807 588550091 5.670000e-124 455.0
10 TraesCS4B01G298400 chr4B 95.406 283 13 0 3863 4145 448874106 448874388 7.340000e-123 451.0
11 TraesCS4B01G298400 chr4B 95.890 73 3 0 2362 2434 584528538 584528466 8.450000e-23 119.0
12 TraesCS4B01G298400 chr4D 91.040 2578 120 42 11 2516 466333373 466335911 0.000000e+00 3378.0
13 TraesCS4B01G298400 chr4D 89.943 2277 108 33 1 2222 466402376 466404586 0.000000e+00 2824.0
14 TraesCS4B01G298400 chr4D 94.258 1463 57 10 2365 3821 466405060 466406501 0.000000e+00 2211.0
15 TraesCS4B01G298400 chr4D 95.622 1279 45 2 2585 3863 466335945 466337212 0.000000e+00 2041.0
16 TraesCS4B01G298400 chr4D 86.344 1860 111 61 690 2491 466292218 466293992 0.000000e+00 1895.0
17 TraesCS4B01G298400 chr4D 89.316 1432 95 28 890 2313 466730928 466729547 0.000000e+00 1744.0
18 TraesCS4B01G298400 chr4D 90.337 1304 86 24 2568 3863 466294069 466295340 0.000000e+00 1674.0
19 TraesCS4B01G298400 chr4D 92.357 929 64 5 928 1855 467116702 467117624 0.000000e+00 1315.0
20 TraesCS4B01G298400 chr4D 93.823 858 43 3 2959 3815 466728288 466727440 0.000000e+00 1282.0
21 TraesCS4B01G298400 chr4D 88.015 534 58 4 4142 4675 466295342 466295869 1.140000e-175 627.0
22 TraesCS4B01G298400 chr4D 87.204 422 37 7 4142 4563 466337214 466337618 9.430000e-127 464.0
23 TraesCS4B01G298400 chr4D 97.902 143 3 0 2220 2362 466404843 466404985 1.030000e-61 248.0
24 TraesCS4B01G298400 chr4D 92.623 122 7 2 2362 2481 466729019 466728898 1.780000e-39 174.0
25 TraesCS4B01G298400 chr4A 93.471 1256 59 7 2613 3864 4473169 4471933 0.000000e+00 1844.0
26 TraesCS4B01G298400 chr4A 93.173 1245 52 15 886 2112 4196478 4195249 0.000000e+00 1797.0
27 TraesCS4B01G298400 chr4A 92.365 1205 70 10 2619 3821 4194494 4193310 0.000000e+00 1696.0
28 TraesCS4B01G298400 chr4A 91.346 1248 75 17 2613 3847 4239470 4238243 0.000000e+00 1676.0
29 TraesCS4B01G298400 chr4A 86.993 1553 111 38 690 2231 4475490 4474018 0.000000e+00 1664.0
30 TraesCS4B01G298400 chr4A 87.364 1472 95 40 690 2134 4241716 4240309 0.000000e+00 1604.0
31 TraesCS4B01G298400 chr4A 84.656 945 78 31 1 894 4197460 4196532 0.000000e+00 880.0
32 TraesCS4B01G298400 chr4A 85.435 666 84 8 4144 4805 4238207 4237551 0.000000e+00 680.0
33 TraesCS4B01G298400 chr4A 83.634 666 86 9 4142 4806 4471932 4471289 5.320000e-169 604.0
34 TraesCS4B01G298400 chr4A 87.291 299 26 7 2615 2913 4159928 4160214 9.970000e-87 331.0
35 TraesCS4B01G298400 chr4A 92.308 208 10 2 2110 2317 4194992 4194791 1.690000e-74 291.0
36 TraesCS4B01G298400 chr4A 90.306 196 4 1 2271 2451 4474021 4473826 4.810000e-60 243.0
37 TraesCS4B01G298400 chr4A 84.052 232 5 14 2138 2362 4240031 4239825 1.370000e-45 195.0
38 TraesCS4B01G298400 chr4A 91.964 112 6 3 2362 2470 4159598 4159709 2.320000e-33 154.0
39 TraesCS4B01G298400 chrUn 100.000 396 0 0 1608 2003 479224296 479223901 0.000000e+00 732.0
40 TraesCS4B01G298400 chr2B 95.775 284 12 0 3862 4145 711323008 711322725 4.390000e-125 459.0
41 TraesCS4B01G298400 chr2B 86.076 79 6 4 3785 3863 692624959 692624886 3.990000e-11 80.5
42 TraesCS4B01G298400 chr6B 95.156 289 14 0 3857 4145 641300847 641301135 1.580000e-124 457.0
43 TraesCS4B01G298400 chr6B 95.455 286 12 1 3860 4145 620698993 620698709 5.670000e-124 455.0
44 TraesCS4B01G298400 chr6B 81.977 172 29 2 254 423 460507634 460507463 1.390000e-30 145.0
45 TraesCS4B01G298400 chr5B 95.439 285 12 1 3862 4145 375458957 375459241 2.040000e-123 453.0
46 TraesCS4B01G298400 chr5B 79.817 218 32 9 250 461 45837360 45837571 1.080000e-31 148.0
47 TraesCS4B01G298400 chr7B 95.406 283 13 0 3863 4145 630127927 630128209 7.340000e-123 451.0
48 TraesCS4B01G298400 chr7B 87.805 164 20 0 4643 4806 442406083 442405920 4.910000e-45 193.0
49 TraesCS4B01G298400 chr3B 95.406 283 12 1 3862 4144 2342252 2342533 2.640000e-122 449.0
50 TraesCS4B01G298400 chr1A 82.637 311 48 6 250 557 124346828 124347135 2.210000e-68 270.0
51 TraesCS4B01G298400 chr1A 88.824 170 18 1 4638 4806 556307232 556307063 1.750000e-49 207.0
52 TraesCS4B01G298400 chr3A 81.690 284 47 5 254 535 482973166 482972886 1.040000e-56 231.0
53 TraesCS4B01G298400 chr6D 90.361 166 16 0 4641 4806 441674792 441674627 8.100000e-53 219.0
54 TraesCS4B01G298400 chr1D 90.361 166 16 0 4641 4806 150907670 150907505 8.100000e-53 219.0
55 TraesCS4B01G298400 chr1D 80.000 310 48 9 251 557 114116095 114116393 2.910000e-52 217.0
56 TraesCS4B01G298400 chr1D 78.853 279 37 14 281 552 246466933 246466670 8.280000e-38 169.0
57 TraesCS4B01G298400 chr7D 87.425 167 16 2 4641 4807 54185341 54185180 2.280000e-43 187.0
58 TraesCS4B01G298400 chr2D 86.826 167 22 0 4641 4807 474219552 474219386 2.280000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G298400 chr4B 584053556 584058363 4807 False 8879.000000 8879 100.000000 1 4808 1 chr4B.!!$F2 4807
1 TraesCS4B01G298400 chr4B 584124945 584128735 3790 False 6560.000000 6560 97.947000 41 3821 1 chr4B.!!$F3 3780
2 TraesCS4B01G298400 chr4B 583765344 583769313 3969 False 1372.666667 1840 86.963667 690 4806 3 chr4B.!!$F9 4116
3 TraesCS4B01G298400 chr4B 584872324 584873251 927 False 1127.000000 1127 88.663000 928 1855 1 chr4B.!!$F5 927
4 TraesCS4B01G298400 chr4B 584897704 584898631 927 False 1127.000000 1127 88.663000 928 1855 1 chr4B.!!$F6 927
5 TraesCS4B01G298400 chr4B 584847031 584847958 927 False 1122.000000 1122 88.556000 928 1855 1 chr4B.!!$F4 927
6 TraesCS4B01G298400 chr4D 466333373 466337618 4245 False 1961.000000 3378 91.288667 11 4563 3 chr4D.!!$F3 4552
7 TraesCS4B01G298400 chr4D 466402376 466406501 4125 False 1761.000000 2824 94.034333 1 3821 3 chr4D.!!$F4 3820
8 TraesCS4B01G298400 chr4D 466292218 466295869 3651 False 1398.666667 1895 88.232000 690 4675 3 chr4D.!!$F2 3985
9 TraesCS4B01G298400 chr4D 467116702 467117624 922 False 1315.000000 1315 92.357000 928 1855 1 chr4D.!!$F1 927
10 TraesCS4B01G298400 chr4D 466727440 466730928 3488 True 1066.666667 1744 91.920667 890 3815 3 chr4D.!!$R1 2925
11 TraesCS4B01G298400 chr4A 4193310 4197460 4150 True 1166.000000 1797 90.625500 1 3821 4 chr4A.!!$R1 3820
12 TraesCS4B01G298400 chr4A 4471289 4475490 4201 True 1088.750000 1844 88.601000 690 4806 4 chr4A.!!$R3 4116
13 TraesCS4B01G298400 chr4A 4237551 4241716 4165 True 1038.750000 1676 87.049250 690 4805 4 chr4A.!!$R2 4115
14 TraesCS4B01G298400 chr4A 4159598 4160214 616 False 242.500000 331 89.627500 2362 2913 2 chr4A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 1180 0.033366 CACCTCGATCACCACACACA 59.967 55.0 0.0 0.0 0.00 3.72 F
967 1182 0.033366 CCTCGATCACCACACACACA 59.967 55.0 0.0 0.0 0.00 3.72 F
969 1184 0.461961 TCGATCACCACACACACACA 59.538 50.0 0.0 0.0 0.00 3.72 F
2776 4989 0.464036 ACTCCACACGCTTGTCTCAA 59.536 50.0 0.0 0.0 31.66 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2945 5204 1.460504 CATGGTCTTGAGCATGCACT 58.539 50.000 23.69 0.0 0.00 4.40 R
3472 5789 1.595382 GAATCAGCGGGTGGATCGG 60.595 63.158 7.42 0.0 0.00 4.18 R
3509 5826 0.249911 GGACACGCTCTCCACAAACT 60.250 55.000 0.00 0.0 0.00 2.66 R
4077 6401 0.107654 GGAGGTCCGTAAAGCTGCAT 60.108 55.000 1.02 0.0 35.46 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.424956 GGCCATCTGTCCATTTGTTCTC 59.575 50.000 0.00 0.00 0.00 2.87
155 159 5.309323 TCTTGAAGTGACAAACAAAGTGG 57.691 39.130 0.00 0.00 0.00 4.00
252 256 8.612233 TTTTGGCTTTTGATTTTCAATTTTCG 57.388 26.923 0.00 0.00 36.11 3.46
375 400 7.908193 AAGTTTCAACTATTAAAACGCAGTG 57.092 32.000 0.00 0.00 38.03 3.66
391 416 2.672381 GCAGTGTGCACAAACAACAAAT 59.328 40.909 23.59 0.00 44.26 2.32
394 419 3.932089 AGTGTGCACAAACAACAAATTCC 59.068 39.130 23.59 3.97 0.00 3.01
700 745 2.415090 GCGTCTGCATGCATTTCTTCTT 60.415 45.455 22.97 0.00 42.15 2.52
732 777 2.416547 TCCGTACGGTTTCTAAGAGACG 59.583 50.000 32.16 3.14 36.47 4.18
763 832 1.604308 CACATGCTCAACAGCCCCA 60.604 57.895 0.00 0.00 46.26 4.96
764 833 0.968901 CACATGCTCAACAGCCCCAT 60.969 55.000 0.00 0.00 46.26 4.00
765 834 0.968901 ACATGCTCAACAGCCCCATG 60.969 55.000 0.00 0.00 46.26 3.66
766 835 2.056223 ATGCTCAACAGCCCCATGC 61.056 57.895 0.00 0.00 46.26 4.06
775 844 2.282745 GCCCCATGCTAGCATCCC 60.283 66.667 27.34 11.73 36.87 3.85
776 845 2.838467 GCCCCATGCTAGCATCCCT 61.838 63.158 27.34 4.78 36.87 4.20
777 846 1.074423 CCCCATGCTAGCATCCCTG 59.926 63.158 27.34 17.39 33.90 4.45
778 847 1.074423 CCCATGCTAGCATCCCTGG 59.926 63.158 27.34 24.81 33.90 4.45
780 849 1.602888 CATGCTAGCATCCCTGGCC 60.603 63.158 27.34 0.00 46.53 5.36
781 850 2.838467 ATGCTAGCATCCCTGGCCC 61.838 63.158 24.67 0.00 46.53 5.80
782 851 3.174265 GCTAGCATCCCTGGCCCT 61.174 66.667 10.63 0.00 41.77 5.19
793 862 3.671079 TCCCTGGCCCTATAAATACACA 58.329 45.455 0.00 0.00 0.00 3.72
963 1178 1.266178 ATCACCTCGATCACCACACA 58.734 50.000 0.00 0.00 0.00 3.72
964 1179 0.317160 TCACCTCGATCACCACACAC 59.683 55.000 0.00 0.00 0.00 3.82
965 1180 0.033366 CACCTCGATCACCACACACA 59.967 55.000 0.00 0.00 0.00 3.72
966 1181 0.033504 ACCTCGATCACCACACACAC 59.966 55.000 0.00 0.00 0.00 3.82
967 1182 0.033366 CCTCGATCACCACACACACA 59.967 55.000 0.00 0.00 0.00 3.72
968 1183 1.139989 CTCGATCACCACACACACAC 58.860 55.000 0.00 0.00 0.00 3.82
969 1184 0.461961 TCGATCACCACACACACACA 59.538 50.000 0.00 0.00 0.00 3.72
970 1185 1.069978 TCGATCACCACACACACACAT 59.930 47.619 0.00 0.00 0.00 3.21
971 1186 1.460743 CGATCACCACACACACACATC 59.539 52.381 0.00 0.00 0.00 3.06
972 1187 1.806542 GATCACCACACACACACATCC 59.193 52.381 0.00 0.00 0.00 3.51
973 1188 0.543749 TCACCACACACACACATCCA 59.456 50.000 0.00 0.00 0.00 3.41
974 1189 0.946528 CACCACACACACACATCCAG 59.053 55.000 0.00 0.00 0.00 3.86
975 1190 0.546122 ACCACACACACACATCCAGT 59.454 50.000 0.00 0.00 0.00 4.00
976 1191 1.064758 ACCACACACACACATCCAGTT 60.065 47.619 0.00 0.00 0.00 3.16
977 1192 1.603802 CCACACACACACATCCAGTTC 59.396 52.381 0.00 0.00 0.00 3.01
978 1193 1.603802 CACACACACACATCCAGTTCC 59.396 52.381 0.00 0.00 0.00 3.62
979 1194 1.211703 ACACACACACATCCAGTTCCA 59.788 47.619 0.00 0.00 0.00 3.53
980 1195 2.158623 ACACACACACATCCAGTTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
981 1196 2.485426 CACACACACATCCAGTTCCATC 59.515 50.000 0.00 0.00 0.00 3.51
982 1197 2.086869 CACACACATCCAGTTCCATCC 58.913 52.381 0.00 0.00 0.00 3.51
983 1198 1.704628 ACACACATCCAGTTCCATCCA 59.295 47.619 0.00 0.00 0.00 3.41
984 1199 2.108075 ACACACATCCAGTTCCATCCAA 59.892 45.455 0.00 0.00 0.00 3.53
985 1200 2.489329 CACACATCCAGTTCCATCCAAC 59.511 50.000 0.00 0.00 0.00 3.77
986 1201 2.108075 ACACATCCAGTTCCATCCAACA 59.892 45.455 0.00 0.00 0.00 3.33
987 1202 2.489329 CACATCCAGTTCCATCCAACAC 59.511 50.000 0.00 0.00 0.00 3.32
1145 1360 2.202440 CGTCGTGTTCGAGGCGAT 60.202 61.111 10.31 0.00 46.96 4.58
1606 1834 5.106317 CGGGAATGTGCAGTATTACAAGTTT 60.106 40.000 7.84 0.00 0.00 2.66
2003 2250 3.306166 CGTGTATCCGACTAGCAAAAAGG 59.694 47.826 0.00 0.00 0.00 3.11
2004 2251 3.063588 GTGTATCCGACTAGCAAAAAGGC 59.936 47.826 0.00 0.00 0.00 4.35
2518 4333 7.899648 ATACTCCCTCCTATTCATATTACGG 57.100 40.000 0.00 0.00 0.00 4.02
2519 4334 5.900437 ACTCCCTCCTATTCATATTACGGA 58.100 41.667 0.00 0.00 0.00 4.69
2776 4989 0.464036 ACTCCACACGCTTGTCTCAA 59.536 50.000 0.00 0.00 31.66 3.02
2945 5204 4.934515 TGACCGTATTAACATATGCACGA 58.065 39.130 1.58 0.00 0.00 4.35
3014 5321 3.261897 TGGTGTGTTTTGGATTTTGGTGT 59.738 39.130 0.00 0.00 0.00 4.16
3296 5603 4.394712 CCGGCTTCGAGGGCAAGT 62.395 66.667 20.92 0.00 35.61 3.16
3459 5768 1.201921 CGACGCTGACCTGCAATTTAC 60.202 52.381 0.00 0.00 0.00 2.01
3509 5826 2.024868 CCAACATGGCGTTCGTCGA 61.025 57.895 0.00 0.00 42.86 4.20
3823 6140 4.595116 ACAGTAACTCATACGTACGCATC 58.405 43.478 16.72 0.00 39.62 3.91
3864 6188 6.030228 GTCCTACGTACGCTACATTTACTTT 58.970 40.000 16.72 0.00 0.00 2.66
3865 6189 6.528072 GTCCTACGTACGCTACATTTACTTTT 59.472 38.462 16.72 0.00 0.00 2.27
3866 6190 7.062255 GTCCTACGTACGCTACATTTACTTTTT 59.938 37.037 16.72 0.00 0.00 1.94
3893 6217 9.810545 TTTACATGATAATACGTGTCTCATTCA 57.189 29.630 0.00 0.00 40.03 2.57
3894 6218 9.981114 TTACATGATAATACGTGTCTCATTCAT 57.019 29.630 0.00 0.00 40.03 2.57
3906 6230 9.035607 ACGTGTCTCATTCATATCATAAAGAAC 57.964 33.333 0.00 0.00 0.00 3.01
3907 6231 9.034544 CGTGTCTCATTCATATCATAAAGAACA 57.965 33.333 0.00 0.00 0.00 3.18
3921 6245 7.847487 TCATAAAGAACAAAGTACAAGTCACG 58.153 34.615 0.00 0.00 0.00 4.35
3922 6246 7.493320 TCATAAAGAACAAAGTACAAGTCACGT 59.507 33.333 0.00 0.00 0.00 4.49
3923 6247 8.757789 CATAAAGAACAAAGTACAAGTCACGTA 58.242 33.333 0.00 0.00 0.00 3.57
3924 6248 7.599630 AAAGAACAAAGTACAAGTCACGTAA 57.400 32.000 0.00 0.00 0.00 3.18
3925 6249 7.599630 AAGAACAAAGTACAAGTCACGTAAA 57.400 32.000 0.00 0.00 0.00 2.01
3926 6250 7.230466 AGAACAAAGTACAAGTCACGTAAAG 57.770 36.000 0.00 0.00 0.00 1.85
3927 6251 7.037438 AGAACAAAGTACAAGTCACGTAAAGA 58.963 34.615 0.00 0.00 0.00 2.52
3928 6252 6.579491 ACAAAGTACAAGTCACGTAAAGAC 57.421 37.500 0.00 0.00 36.26 3.01
3929 6253 5.521372 ACAAAGTACAAGTCACGTAAAGACC 59.479 40.000 0.00 0.00 36.68 3.85
3930 6254 3.893720 AGTACAAGTCACGTAAAGACCG 58.106 45.455 0.00 0.00 36.68 4.79
3931 6255 3.565482 AGTACAAGTCACGTAAAGACCGA 59.435 43.478 0.00 0.00 36.68 4.69
3932 6256 2.735823 ACAAGTCACGTAAAGACCGAC 58.264 47.619 1.21 0.00 36.68 4.79
3933 6257 2.099592 ACAAGTCACGTAAAGACCGACA 59.900 45.455 1.21 0.00 36.68 4.35
3934 6258 3.243636 ACAAGTCACGTAAAGACCGACAT 60.244 43.478 1.21 0.00 36.68 3.06
3935 6259 2.942710 AGTCACGTAAAGACCGACATG 58.057 47.619 1.21 0.00 36.68 3.21
3936 6260 2.555325 AGTCACGTAAAGACCGACATGA 59.445 45.455 0.00 0.00 36.68 3.07
3937 6261 2.660236 GTCACGTAAAGACCGACATGAC 59.340 50.000 0.00 0.00 0.00 3.06
3938 6262 2.293955 TCACGTAAAGACCGACATGACA 59.706 45.455 0.00 0.00 0.00 3.58
3939 6263 3.054166 CACGTAAAGACCGACATGACAA 58.946 45.455 0.00 0.00 0.00 3.18
3940 6264 3.491639 CACGTAAAGACCGACATGACAAA 59.508 43.478 0.00 0.00 0.00 2.83
3941 6265 4.025563 CACGTAAAGACCGACATGACAAAA 60.026 41.667 0.00 0.00 0.00 2.44
3942 6266 4.025480 ACGTAAAGACCGACATGACAAAAC 60.025 41.667 0.00 0.00 0.00 2.43
3943 6267 4.210537 CGTAAAGACCGACATGACAAAACT 59.789 41.667 0.00 0.00 0.00 2.66
3944 6268 4.552166 AAAGACCGACATGACAAAACTG 57.448 40.909 0.00 0.00 0.00 3.16
3945 6269 3.469008 AGACCGACATGACAAAACTGA 57.531 42.857 0.00 0.00 0.00 3.41
3946 6270 3.804036 AGACCGACATGACAAAACTGAA 58.196 40.909 0.00 0.00 0.00 3.02
3947 6271 4.196193 AGACCGACATGACAAAACTGAAA 58.804 39.130 0.00 0.00 0.00 2.69
3948 6272 4.638421 AGACCGACATGACAAAACTGAAAA 59.362 37.500 0.00 0.00 0.00 2.29
3949 6273 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
3950 6274 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
3951 6275 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
3952 6276 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
3953 6277 7.012894 ACCGACATGACAAAACTGAAAAGATAA 59.987 33.333 0.00 0.00 0.00 1.75
3954 6278 7.323656 CCGACATGACAAAACTGAAAAGATAAC 59.676 37.037 0.00 0.00 0.00 1.89
3955 6279 7.855409 CGACATGACAAAACTGAAAAGATAACA 59.145 33.333 0.00 0.00 0.00 2.41
3956 6280 9.173939 GACATGACAAAACTGAAAAGATAACAG 57.826 33.333 0.00 0.00 37.62 3.16
3957 6281 8.902806 ACATGACAAAACTGAAAAGATAACAGA 58.097 29.630 0.00 0.00 35.85 3.41
3958 6282 9.734620 CATGACAAAACTGAAAAGATAACAGAA 57.265 29.630 0.00 0.00 35.85 3.02
3959 6283 9.736023 ATGACAAAACTGAAAAGATAACAGAAC 57.264 29.630 0.00 0.00 35.85 3.01
3960 6284 8.735315 TGACAAAACTGAAAAGATAACAGAACA 58.265 29.630 0.00 0.00 35.85 3.18
3961 6285 9.736023 GACAAAACTGAAAAGATAACAGAACAT 57.264 29.630 0.00 0.00 35.85 2.71
3962 6286 9.736023 ACAAAACTGAAAAGATAACAGAACATC 57.264 29.630 0.00 0.00 35.85 3.06
3963 6287 9.956720 CAAAACTGAAAAGATAACAGAACATCT 57.043 29.630 0.00 0.00 35.85 2.90
3965 6289 9.566432 AAACTGAAAAGATAACAGAACATCTCT 57.434 29.630 0.00 0.00 35.85 3.10
3977 6301 5.275067 AGAACATCTCTGAGCTTGATACC 57.725 43.478 12.47 2.08 31.12 2.73
3978 6302 4.713814 AGAACATCTCTGAGCTTGATACCA 59.286 41.667 12.47 0.00 31.12 3.25
3979 6303 5.188555 AGAACATCTCTGAGCTTGATACCAA 59.811 40.000 12.47 0.00 31.12 3.67
3980 6304 4.764172 ACATCTCTGAGCTTGATACCAAC 58.236 43.478 12.47 0.00 0.00 3.77
3981 6305 3.510388 TCTCTGAGCTTGATACCAACG 57.490 47.619 0.00 0.00 0.00 4.10
3982 6306 2.826128 TCTCTGAGCTTGATACCAACGT 59.174 45.455 0.00 0.00 0.00 3.99
3983 6307 3.119459 TCTCTGAGCTTGATACCAACGTC 60.119 47.826 0.00 0.00 0.00 4.34
3984 6308 2.094182 TCTGAGCTTGATACCAACGTCC 60.094 50.000 0.00 0.00 0.00 4.79
3985 6309 1.278238 GAGCTTGATACCAACGTCCG 58.722 55.000 0.00 0.00 0.00 4.79
3986 6310 0.606604 AGCTTGATACCAACGTCCGT 59.393 50.000 0.00 0.00 0.00 4.69
3987 6311 0.997196 GCTTGATACCAACGTCCGTC 59.003 55.000 0.00 0.00 0.00 4.79
3988 6312 1.670674 GCTTGATACCAACGTCCGTCA 60.671 52.381 0.00 0.00 0.00 4.35
3989 6313 1.990563 CTTGATACCAACGTCCGTCAC 59.009 52.381 0.00 0.00 0.00 3.67
3990 6314 0.244450 TGATACCAACGTCCGTCACC 59.756 55.000 0.00 0.00 0.00 4.02
3991 6315 0.529378 GATACCAACGTCCGTCACCT 59.471 55.000 0.00 0.00 0.00 4.00
3992 6316 0.245539 ATACCAACGTCCGTCACCTG 59.754 55.000 0.00 0.00 0.00 4.00
3993 6317 2.424705 TACCAACGTCCGTCACCTGC 62.425 60.000 0.00 0.00 0.00 4.85
3994 6318 3.041940 CAACGTCCGTCACCTGCC 61.042 66.667 0.00 0.00 0.00 4.85
3995 6319 3.231736 AACGTCCGTCACCTGCCT 61.232 61.111 0.00 0.00 0.00 4.75
3996 6320 3.222354 AACGTCCGTCACCTGCCTC 62.222 63.158 0.00 0.00 0.00 4.70
3997 6321 4.436998 CGTCCGTCACCTGCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
3998 6322 4.436998 GTCCGTCACCTGCCTCCG 62.437 72.222 0.00 0.00 0.00 4.63
4024 6348 2.669569 GCAGCAGCCACCGAAGAA 60.670 61.111 0.00 0.00 33.58 2.52
4025 6349 2.260869 GCAGCAGCCACCGAAGAAA 61.261 57.895 0.00 0.00 33.58 2.52
4026 6350 1.795170 GCAGCAGCCACCGAAGAAAA 61.795 55.000 0.00 0.00 33.58 2.29
4027 6351 0.239347 CAGCAGCCACCGAAGAAAAG 59.761 55.000 0.00 0.00 0.00 2.27
4028 6352 0.108585 AGCAGCCACCGAAGAAAAGA 59.891 50.000 0.00 0.00 0.00 2.52
4029 6353 0.951558 GCAGCCACCGAAGAAAAGAA 59.048 50.000 0.00 0.00 0.00 2.52
4030 6354 1.541588 GCAGCCACCGAAGAAAAGAAT 59.458 47.619 0.00 0.00 0.00 2.40
4031 6355 2.669391 GCAGCCACCGAAGAAAAGAATG 60.669 50.000 0.00 0.00 0.00 2.67
4032 6356 2.813754 CAGCCACCGAAGAAAAGAATGA 59.186 45.455 0.00 0.00 0.00 2.57
4033 6357 2.814336 AGCCACCGAAGAAAAGAATGAC 59.186 45.455 0.00 0.00 0.00 3.06
4034 6358 2.412847 GCCACCGAAGAAAAGAATGACG 60.413 50.000 0.00 0.00 0.00 4.35
4035 6359 3.064207 CCACCGAAGAAAAGAATGACGA 58.936 45.455 0.00 0.00 0.00 4.20
4036 6360 3.496884 CCACCGAAGAAAAGAATGACGAA 59.503 43.478 0.00 0.00 0.00 3.85
4037 6361 4.154195 CCACCGAAGAAAAGAATGACGAAT 59.846 41.667 0.00 0.00 0.00 3.34
4038 6362 5.316770 CACCGAAGAAAAGAATGACGAATC 58.683 41.667 0.00 0.00 0.00 2.52
4039 6363 4.994852 ACCGAAGAAAAGAATGACGAATCA 59.005 37.500 0.00 0.00 39.83 2.57
4040 6364 5.107065 ACCGAAGAAAAGAATGACGAATCAC 60.107 40.000 0.00 0.00 37.79 3.06
4041 6365 5.316770 CGAAGAAAAGAATGACGAATCACC 58.683 41.667 0.00 0.00 37.79 4.02
4042 6366 5.120830 CGAAGAAAAGAATGACGAATCACCT 59.879 40.000 0.00 0.00 37.79 4.00
4043 6367 6.487689 AAGAAAAGAATGACGAATCACCTC 57.512 37.500 0.00 0.00 37.79 3.85
4044 6368 4.938226 AGAAAAGAATGACGAATCACCTCC 59.062 41.667 0.00 0.00 37.79 4.30
4045 6369 4.559862 AAAGAATGACGAATCACCTCCT 57.440 40.909 0.00 0.00 37.79 3.69
4046 6370 3.810310 AGAATGACGAATCACCTCCTC 57.190 47.619 0.00 0.00 37.79 3.71
4047 6371 3.099905 AGAATGACGAATCACCTCCTCA 58.900 45.455 0.00 0.00 37.79 3.86
4048 6372 2.969628 ATGACGAATCACCTCCTCAC 57.030 50.000 0.00 0.00 37.79 3.51
4049 6373 0.895530 TGACGAATCACCTCCTCACC 59.104 55.000 0.00 0.00 0.00 4.02
4050 6374 0.175989 GACGAATCACCTCCTCACCC 59.824 60.000 0.00 0.00 0.00 4.61
4051 6375 0.544357 ACGAATCACCTCCTCACCCA 60.544 55.000 0.00 0.00 0.00 4.51
4052 6376 0.613260 CGAATCACCTCCTCACCCAA 59.387 55.000 0.00 0.00 0.00 4.12
4053 6377 1.406069 CGAATCACCTCCTCACCCAAG 60.406 57.143 0.00 0.00 0.00 3.61
4054 6378 0.329596 AATCACCTCCTCACCCAAGC 59.670 55.000 0.00 0.00 0.00 4.01
4055 6379 0.548682 ATCACCTCCTCACCCAAGCT 60.549 55.000 0.00 0.00 0.00 3.74
4056 6380 1.194781 TCACCTCCTCACCCAAGCTC 61.195 60.000 0.00 0.00 0.00 4.09
4057 6381 2.286523 ACCTCCTCACCCAAGCTCG 61.287 63.158 0.00 0.00 0.00 5.03
4058 6382 1.984570 CCTCCTCACCCAAGCTCGA 60.985 63.158 0.00 0.00 0.00 4.04
4059 6383 1.216710 CTCCTCACCCAAGCTCGAC 59.783 63.158 0.00 0.00 0.00 4.20
4060 6384 2.125912 CCTCACCCAAGCTCGACG 60.126 66.667 0.00 0.00 0.00 5.12
4061 6385 2.636412 CCTCACCCAAGCTCGACGA 61.636 63.158 0.00 0.00 0.00 4.20
4062 6386 1.513158 CTCACCCAAGCTCGACGAT 59.487 57.895 0.00 0.00 0.00 3.73
4063 6387 0.803768 CTCACCCAAGCTCGACGATG 60.804 60.000 0.00 0.00 0.00 3.84
4064 6388 2.125512 ACCCAAGCTCGACGATGC 60.126 61.111 0.00 4.57 0.00 3.91
4065 6389 2.185350 CCCAAGCTCGACGATGCT 59.815 61.111 13.69 13.69 41.82 3.79
4066 6390 1.880340 CCCAAGCTCGACGATGCTC 60.880 63.158 17.94 1.54 38.75 4.26
4067 6391 1.880340 CCAAGCTCGACGATGCTCC 60.880 63.158 17.94 0.00 38.75 4.70
4068 6392 1.153765 CAAGCTCGACGATGCTCCA 60.154 57.895 17.94 0.00 38.75 3.86
4069 6393 0.529337 CAAGCTCGACGATGCTCCAT 60.529 55.000 17.94 4.82 38.75 3.41
4070 6394 0.249238 AAGCTCGACGATGCTCCATC 60.249 55.000 17.94 0.00 38.75 3.51
4071 6395 1.663074 GCTCGACGATGCTCCATCC 60.663 63.158 0.00 0.00 37.57 3.51
4072 6396 1.006805 CTCGACGATGCTCCATCCC 60.007 63.158 0.00 0.00 37.57 3.85
4073 6397 1.455773 TCGACGATGCTCCATCCCT 60.456 57.895 0.00 0.00 37.57 4.20
4074 6398 1.300465 CGACGATGCTCCATCCCTG 60.300 63.158 0.00 0.00 37.57 4.45
4075 6399 1.738346 CGACGATGCTCCATCCCTGA 61.738 60.000 0.00 0.00 37.57 3.86
4076 6400 0.683973 GACGATGCTCCATCCCTGAT 59.316 55.000 0.00 0.00 37.57 2.90
4077 6401 1.895798 GACGATGCTCCATCCCTGATA 59.104 52.381 0.00 0.00 37.57 2.15
4078 6402 2.499289 GACGATGCTCCATCCCTGATAT 59.501 50.000 0.00 0.00 37.57 1.63
4079 6403 2.235650 ACGATGCTCCATCCCTGATATG 59.764 50.000 0.00 0.00 37.57 1.78
4080 6404 2.641305 GATGCTCCATCCCTGATATGC 58.359 52.381 0.00 0.00 35.07 3.14
4081 6405 1.437397 TGCTCCATCCCTGATATGCA 58.563 50.000 0.00 0.00 0.00 3.96
4082 6406 1.350019 TGCTCCATCCCTGATATGCAG 59.650 52.381 0.00 0.00 44.49 4.41
4083 6407 1.949547 GCTCCATCCCTGATATGCAGC 60.950 57.143 0.00 0.00 43.50 5.25
4084 6408 1.629353 CTCCATCCCTGATATGCAGCT 59.371 52.381 0.00 0.00 43.50 4.24
4085 6409 2.040012 CTCCATCCCTGATATGCAGCTT 59.960 50.000 0.00 0.00 43.50 3.74
4086 6410 2.444388 TCCATCCCTGATATGCAGCTTT 59.556 45.455 0.00 0.00 43.50 3.51
4087 6411 3.652387 TCCATCCCTGATATGCAGCTTTA 59.348 43.478 0.00 0.00 43.50 1.85
4088 6412 3.755378 CCATCCCTGATATGCAGCTTTAC 59.245 47.826 0.00 0.00 43.50 2.01
4089 6413 3.111853 TCCCTGATATGCAGCTTTACG 57.888 47.619 0.00 0.00 43.50 3.18
4090 6414 2.146342 CCCTGATATGCAGCTTTACGG 58.854 52.381 0.00 0.00 43.50 4.02
4091 6415 2.224281 CCCTGATATGCAGCTTTACGGA 60.224 50.000 0.00 0.00 43.50 4.69
4092 6416 2.802816 CCTGATATGCAGCTTTACGGAC 59.197 50.000 0.00 0.00 43.50 4.79
4093 6417 2.802816 CTGATATGCAGCTTTACGGACC 59.197 50.000 0.00 0.00 37.90 4.46
4094 6418 2.434336 TGATATGCAGCTTTACGGACCT 59.566 45.455 0.00 0.00 0.00 3.85
4095 6419 2.596904 TATGCAGCTTTACGGACCTC 57.403 50.000 0.00 0.00 0.00 3.85
4096 6420 0.107654 ATGCAGCTTTACGGACCTCC 60.108 55.000 0.00 0.00 0.00 4.30
4097 6421 1.295423 GCAGCTTTACGGACCTCCA 59.705 57.895 0.00 0.00 35.14 3.86
4098 6422 0.321298 GCAGCTTTACGGACCTCCAA 60.321 55.000 0.00 0.00 35.14 3.53
4099 6423 1.726853 CAGCTTTACGGACCTCCAAG 58.273 55.000 0.00 0.00 35.14 3.61
4100 6424 0.613777 AGCTTTACGGACCTCCAAGG 59.386 55.000 0.00 0.00 42.49 3.61
4121 6445 3.467374 TGGCTCACCAAAAATGAAACC 57.533 42.857 0.00 0.00 45.37 3.27
4122 6446 2.103941 TGGCTCACCAAAAATGAAACCC 59.896 45.455 0.00 0.00 45.37 4.11
4123 6447 2.368548 GGCTCACCAAAAATGAAACCCT 59.631 45.455 0.00 0.00 35.26 4.34
4124 6448 3.181455 GGCTCACCAAAAATGAAACCCTT 60.181 43.478 0.00 0.00 35.26 3.95
4125 6449 4.039852 GGCTCACCAAAAATGAAACCCTTA 59.960 41.667 0.00 0.00 35.26 2.69
4126 6450 4.988540 GCTCACCAAAAATGAAACCCTTAC 59.011 41.667 0.00 0.00 0.00 2.34
4127 6451 5.538118 CTCACCAAAAATGAAACCCTTACC 58.462 41.667 0.00 0.00 0.00 2.85
4128 6452 4.038162 TCACCAAAAATGAAACCCTTACCG 59.962 41.667 0.00 0.00 0.00 4.02
4129 6453 3.962063 ACCAAAAATGAAACCCTTACCGT 59.038 39.130 0.00 0.00 0.00 4.83
4130 6454 4.406326 ACCAAAAATGAAACCCTTACCGTT 59.594 37.500 0.00 0.00 0.00 4.44
4131 6455 4.747605 CCAAAAATGAAACCCTTACCGTTG 59.252 41.667 0.00 0.00 0.00 4.10
4132 6456 5.452077 CCAAAAATGAAACCCTTACCGTTGA 60.452 40.000 0.00 0.00 0.00 3.18
4133 6457 5.855740 AAAATGAAACCCTTACCGTTGAA 57.144 34.783 0.00 0.00 0.00 2.69
4134 6458 4.841443 AATGAAACCCTTACCGTTGAAC 57.159 40.909 0.00 0.00 0.00 3.18
4135 6459 2.211806 TGAAACCCTTACCGTTGAACG 58.788 47.619 11.30 11.30 42.11 3.95
4136 6460 2.158986 TGAAACCCTTACCGTTGAACGA 60.159 45.455 20.47 0.00 46.05 3.85
4137 6461 2.618442 AACCCTTACCGTTGAACGAA 57.382 45.000 20.47 5.46 46.05 3.85
4138 6462 2.845363 ACCCTTACCGTTGAACGAAT 57.155 45.000 20.47 9.42 46.05 3.34
4139 6463 2.691927 ACCCTTACCGTTGAACGAATC 58.308 47.619 20.47 0.00 46.05 2.52
4140 6464 2.037511 ACCCTTACCGTTGAACGAATCA 59.962 45.455 20.47 0.00 46.05 2.57
4163 6496 0.955178 CACAACAATAACCACGGCCA 59.045 50.000 2.24 0.00 0.00 5.36
4200 6533 6.424812 ACGCCCGGTATAATACATTCTTTTAC 59.575 38.462 0.00 0.00 0.00 2.01
4273 6609 5.066893 TCGCGACCAAGAATATGTAGTAGTT 59.933 40.000 3.71 0.00 0.00 2.24
4291 6627 2.647802 AGTTGTTAGGGCCTACCATTGT 59.352 45.455 14.17 0.00 43.89 2.71
4392 6728 0.890683 GCACATTGGGCTAGCTTGTT 59.109 50.000 15.72 0.00 0.00 2.83
4393 6729 1.273327 GCACATTGGGCTAGCTTGTTT 59.727 47.619 15.72 0.00 0.00 2.83
4394 6730 2.491693 GCACATTGGGCTAGCTTGTTTA 59.508 45.455 15.72 0.00 0.00 2.01
4398 6734 6.498304 CACATTGGGCTAGCTTGTTTATTAG 58.502 40.000 15.72 0.00 0.00 1.73
4474 6810 0.827368 ACCTTTGGAAAAGGCGCAAA 59.173 45.000 16.84 0.00 41.10 3.68
4475 6811 1.416030 ACCTTTGGAAAAGGCGCAAAT 59.584 42.857 16.84 0.00 41.10 2.32
4527 6865 2.592308 CTGCTACCCTCAAGGCCC 59.408 66.667 0.00 0.00 40.58 5.80
4539 6877 0.250124 CAAGGCCCACTGTAACGACA 60.250 55.000 0.00 0.00 0.00 4.35
4568 6906 1.713830 GCGCAGACGGTTTACCATC 59.286 57.895 0.30 0.00 40.57 3.51
4576 6914 0.390603 CGGTTTACCATCGAGCACCA 60.391 55.000 0.00 0.00 35.14 4.17
4621 6959 2.582978 GCTTGTCCCCCGTCCTAC 59.417 66.667 0.00 0.00 0.00 3.18
4626 6964 3.286725 TCCCCCGTCCTACCCCTT 61.287 66.667 0.00 0.00 0.00 3.95
4630 6968 0.986550 CCCCGTCCTACCCCTTTGAT 60.987 60.000 0.00 0.00 0.00 2.57
4639 6977 0.190815 ACCCCTTTGATGGTTTGCCT 59.809 50.000 0.00 0.00 35.27 4.75
4649 6987 2.583441 GGTTTGCCTGGAAAGCCCC 61.583 63.158 9.10 0.00 0.00 5.80
4689 7027 3.687572 CAACTGGATTGTATCTGCAGC 57.312 47.619 9.47 0.00 33.20 5.25
4708 7046 2.342179 GCAGTTGGCTCTCTCAAGTAC 58.658 52.381 0.00 0.00 40.25 2.73
4719 7057 0.108138 CTCAAGTACTCCGGGCCAAG 60.108 60.000 4.39 2.34 0.00 3.61
4763 7102 6.875972 AGAATTTGTACATGGAGTCTAGGT 57.124 37.500 0.00 0.00 0.00 3.08
4765 7104 8.554490 AGAATTTGTACATGGAGTCTAGGTAT 57.446 34.615 4.27 0.00 0.00 2.73
4769 7108 9.601810 ATTTGTACATGGAGTCTAGGTATATGA 57.398 33.333 4.27 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.599343 CGTCTGATGGAGAACAAATGGA 58.401 45.455 0.00 0.00 30.26 3.41
21 22 0.958091 TGTTTTTGGCCGTCTGATGG 59.042 50.000 11.67 11.67 0.00 3.51
111 115 3.779444 TGGGGTGCCAAACATTATGTTA 58.221 40.909 11.23 0.00 40.14 2.41
112 116 2.614259 TGGGGTGCCAAACATTATGTT 58.386 42.857 4.56 4.56 43.41 2.71
155 159 8.624776 CCACAAATCCTCTCCAGTATAAATTTC 58.375 37.037 0.00 0.00 0.00 2.17
370 395 1.707632 TTGTTGTTTGTGCACACTGC 58.292 45.000 21.56 12.97 45.29 4.40
375 400 2.283884 CGGGAATTTGTTGTTTGTGCAC 59.716 45.455 10.75 10.75 0.00 4.57
732 777 0.109412 GCATGTGAGCTTTCCACTGC 60.109 55.000 5.71 8.47 35.66 4.40
763 832 2.838467 GGGCCAGGGATGCTAGCAT 61.838 63.158 29.97 29.97 39.69 3.79
764 833 2.620048 TAGGGCCAGGGATGCTAGCA 62.620 60.000 21.85 21.85 0.00 3.49
765 834 1.204113 ATAGGGCCAGGGATGCTAGC 61.204 60.000 8.10 8.10 0.00 3.42
766 835 2.254152 TATAGGGCCAGGGATGCTAG 57.746 55.000 6.18 0.00 0.00 3.42
767 836 2.733298 TTATAGGGCCAGGGATGCTA 57.267 50.000 6.18 0.00 0.00 3.49
768 837 1.833187 TTTATAGGGCCAGGGATGCT 58.167 50.000 6.18 0.00 0.00 3.79
769 838 2.907458 ATTTATAGGGCCAGGGATGC 57.093 50.000 6.18 0.00 0.00 3.91
770 839 4.042809 TGTGTATTTATAGGGCCAGGGATG 59.957 45.833 6.18 0.00 0.00 3.51
771 840 4.247814 TGTGTATTTATAGGGCCAGGGAT 58.752 43.478 6.18 0.00 0.00 3.85
772 841 3.671079 TGTGTATTTATAGGGCCAGGGA 58.329 45.455 6.18 0.00 0.00 4.20
773 842 4.398319 CTTGTGTATTTATAGGGCCAGGG 58.602 47.826 6.18 0.00 0.00 4.45
774 843 4.398319 CCTTGTGTATTTATAGGGCCAGG 58.602 47.826 6.18 0.00 0.00 4.45
775 844 3.821033 GCCTTGTGTATTTATAGGGCCAG 59.179 47.826 6.18 0.00 33.07 4.85
776 845 3.827722 GCCTTGTGTATTTATAGGGCCA 58.172 45.455 6.18 0.00 33.07 5.36
779 848 4.315803 CGAGGCCTTGTGTATTTATAGGG 58.684 47.826 6.77 0.00 0.00 3.53
780 849 3.746492 GCGAGGCCTTGTGTATTTATAGG 59.254 47.826 21.55 0.00 0.00 2.57
781 850 3.746492 GGCGAGGCCTTGTGTATTTATAG 59.254 47.826 21.55 0.00 46.69 1.31
782 851 3.735591 GGCGAGGCCTTGTGTATTTATA 58.264 45.455 21.55 0.00 46.69 0.98
963 1178 1.704628 TGGATGGAACTGGATGTGTGT 59.295 47.619 0.00 0.00 0.00 3.72
964 1179 2.489329 GTTGGATGGAACTGGATGTGTG 59.511 50.000 0.00 0.00 0.00 3.82
965 1180 2.108075 TGTTGGATGGAACTGGATGTGT 59.892 45.455 0.00 0.00 0.00 3.72
966 1181 2.489329 GTGTTGGATGGAACTGGATGTG 59.511 50.000 0.00 0.00 0.00 3.21
967 1182 2.555227 GGTGTTGGATGGAACTGGATGT 60.555 50.000 0.00 0.00 0.00 3.06
968 1183 2.094675 GGTGTTGGATGGAACTGGATG 58.905 52.381 0.00 0.00 0.00 3.51
969 1184 1.995542 AGGTGTTGGATGGAACTGGAT 59.004 47.619 0.00 0.00 0.00 3.41
970 1185 1.444933 AGGTGTTGGATGGAACTGGA 58.555 50.000 0.00 0.00 0.00 3.86
971 1186 1.888512 CAAGGTGTTGGATGGAACTGG 59.111 52.381 0.00 0.00 0.00 4.00
982 1197 2.346803 CATCGTCTACCCAAGGTGTTG 58.653 52.381 0.00 0.00 36.19 3.33
983 1198 1.278127 CCATCGTCTACCCAAGGTGTT 59.722 52.381 0.00 0.00 36.19 3.32
984 1199 0.902531 CCATCGTCTACCCAAGGTGT 59.097 55.000 0.00 0.00 36.19 4.16
985 1200 0.462047 GCCATCGTCTACCCAAGGTG 60.462 60.000 0.00 0.00 36.19 4.00
986 1201 1.623542 GGCCATCGTCTACCCAAGGT 61.624 60.000 0.00 0.00 40.16 3.50
987 1202 1.146263 GGCCATCGTCTACCCAAGG 59.854 63.158 0.00 0.00 0.00 3.61
1606 1834 0.105778 TGCACATCACCACGAACTCA 59.894 50.000 0.00 0.00 0.00 3.41
2003 2250 1.541147 TGTGAACAAGCTTAGCATGGC 59.459 47.619 14.00 6.08 31.12 4.40
2004 2251 2.553602 TGTGTGAACAAGCTTAGCATGG 59.446 45.455 14.00 1.53 31.12 3.66
2776 4989 2.416432 GGGCCGCTCGTAGAAGAGT 61.416 63.158 0.00 0.00 40.26 3.24
2945 5204 1.460504 CATGGTCTTGAGCATGCACT 58.539 50.000 23.69 0.00 0.00 4.40
3472 5789 1.595382 GAATCAGCGGGTGGATCGG 60.595 63.158 7.42 0.00 0.00 4.18
3509 5826 0.249911 GGACACGCTCTCCACAAACT 60.250 55.000 0.00 0.00 0.00 2.66
3823 6140 0.708370 GACGATGTGTGTACTGTGCG 59.292 55.000 0.00 0.00 0.00 5.34
3867 6191 9.810545 TGAATGAGACACGTATTATCATGTAAA 57.189 29.630 7.11 0.00 31.24 2.01
3868 6192 9.981114 ATGAATGAGACACGTATTATCATGTAA 57.019 29.630 7.11 0.00 31.24 2.41
3880 6204 9.035607 GTTCTTTATGATATGAATGAGACACGT 57.964 33.333 0.00 0.00 0.00 4.49
3881 6205 9.034544 TGTTCTTTATGATATGAATGAGACACG 57.965 33.333 0.00 0.00 0.00 4.49
3895 6219 8.495949 CGTGACTTGTACTTTGTTCTTTATGAT 58.504 33.333 0.00 0.00 0.00 2.45
3896 6220 7.493320 ACGTGACTTGTACTTTGTTCTTTATGA 59.507 33.333 0.00 0.00 0.00 2.15
3897 6221 7.627340 ACGTGACTTGTACTTTGTTCTTTATG 58.373 34.615 0.00 0.00 0.00 1.90
3898 6222 7.781548 ACGTGACTTGTACTTTGTTCTTTAT 57.218 32.000 0.00 0.00 0.00 1.40
3899 6223 8.700722 TTACGTGACTTGTACTTTGTTCTTTA 57.299 30.769 0.00 0.00 0.00 1.85
3900 6224 7.599630 TTACGTGACTTGTACTTTGTTCTTT 57.400 32.000 0.00 0.00 0.00 2.52
3901 6225 7.546667 TCTTTACGTGACTTGTACTTTGTTCTT 59.453 33.333 0.00 0.00 0.00 2.52
3902 6226 7.009907 GTCTTTACGTGACTTGTACTTTGTTCT 59.990 37.037 0.00 0.00 0.00 3.01
3903 6227 7.115553 GTCTTTACGTGACTTGTACTTTGTTC 58.884 38.462 0.00 0.00 0.00 3.18
3904 6228 6.036408 GGTCTTTACGTGACTTGTACTTTGTT 59.964 38.462 0.00 0.00 35.04 2.83
3905 6229 5.521372 GGTCTTTACGTGACTTGTACTTTGT 59.479 40.000 0.00 0.00 35.04 2.83
3906 6230 5.332055 CGGTCTTTACGTGACTTGTACTTTG 60.332 44.000 0.00 0.00 35.04 2.77
3907 6231 4.741676 CGGTCTTTACGTGACTTGTACTTT 59.258 41.667 0.00 0.00 35.04 2.66
3908 6232 4.036734 TCGGTCTTTACGTGACTTGTACTT 59.963 41.667 0.00 0.00 35.04 2.24
3909 6233 3.565482 TCGGTCTTTACGTGACTTGTACT 59.435 43.478 0.00 0.00 35.04 2.73
3910 6234 3.665871 GTCGGTCTTTACGTGACTTGTAC 59.334 47.826 0.00 0.00 35.04 2.90
3911 6235 3.314913 TGTCGGTCTTTACGTGACTTGTA 59.685 43.478 0.00 0.00 34.50 2.41
3912 6236 2.099592 TGTCGGTCTTTACGTGACTTGT 59.900 45.455 0.00 0.00 34.50 3.16
3913 6237 2.734670 TGTCGGTCTTTACGTGACTTG 58.265 47.619 0.00 0.00 34.50 3.16
3914 6238 3.005050 TCATGTCGGTCTTTACGTGACTT 59.995 43.478 0.00 0.00 36.86 3.01
3915 6239 2.555325 TCATGTCGGTCTTTACGTGACT 59.445 45.455 0.00 0.00 36.86 3.41
3916 6240 2.937591 TCATGTCGGTCTTTACGTGAC 58.062 47.619 0.00 0.00 36.86 3.67
3917 6241 2.293955 TGTCATGTCGGTCTTTACGTGA 59.706 45.455 0.00 0.00 38.87 4.35
3918 6242 2.668250 TGTCATGTCGGTCTTTACGTG 58.332 47.619 0.00 0.00 34.57 4.49
3919 6243 3.374220 TTGTCATGTCGGTCTTTACGT 57.626 42.857 0.00 0.00 0.00 3.57
3920 6244 4.210537 AGTTTTGTCATGTCGGTCTTTACG 59.789 41.667 0.00 0.00 0.00 3.18
3921 6245 5.235616 TCAGTTTTGTCATGTCGGTCTTTAC 59.764 40.000 0.00 0.00 0.00 2.01
3922 6246 5.361427 TCAGTTTTGTCATGTCGGTCTTTA 58.639 37.500 0.00 0.00 0.00 1.85
3923 6247 4.196193 TCAGTTTTGTCATGTCGGTCTTT 58.804 39.130 0.00 0.00 0.00 2.52
3924 6248 3.804036 TCAGTTTTGTCATGTCGGTCTT 58.196 40.909 0.00 0.00 0.00 3.01
3925 6249 3.469008 TCAGTTTTGTCATGTCGGTCT 57.531 42.857 0.00 0.00 0.00 3.85
3926 6250 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
3927 6251 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
3928 6252 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
3929 6253 7.855409 TGTTATCTTTTCAGTTTTGTCATGTCG 59.145 33.333 0.00 0.00 0.00 4.35
3930 6254 9.173939 CTGTTATCTTTTCAGTTTTGTCATGTC 57.826 33.333 0.00 0.00 0.00 3.06
3931 6255 8.902806 TCTGTTATCTTTTCAGTTTTGTCATGT 58.097 29.630 0.00 0.00 0.00 3.21
3932 6256 9.734620 TTCTGTTATCTTTTCAGTTTTGTCATG 57.265 29.630 0.00 0.00 0.00 3.07
3933 6257 9.736023 GTTCTGTTATCTTTTCAGTTTTGTCAT 57.264 29.630 0.00 0.00 0.00 3.06
3934 6258 8.735315 TGTTCTGTTATCTTTTCAGTTTTGTCA 58.265 29.630 0.00 0.00 0.00 3.58
3935 6259 9.736023 ATGTTCTGTTATCTTTTCAGTTTTGTC 57.264 29.630 0.00 0.00 0.00 3.18
3936 6260 9.736023 GATGTTCTGTTATCTTTTCAGTTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
3937 6261 9.956720 AGATGTTCTGTTATCTTTTCAGTTTTG 57.043 29.630 0.00 0.00 29.64 2.44
3939 6263 9.566432 AGAGATGTTCTGTTATCTTTTCAGTTT 57.434 29.630 0.00 0.00 33.97 2.66
3940 6264 8.997323 CAGAGATGTTCTGTTATCTTTTCAGTT 58.003 33.333 0.00 0.00 46.77 3.16
3941 6265 8.545229 CAGAGATGTTCTGTTATCTTTTCAGT 57.455 34.615 0.00 0.00 46.77 3.41
3954 6278 8.791983 GTTGGTATCAAGCTCAGAGATGTTCTG 61.792 44.444 0.00 0.00 42.90 3.02
3955 6279 4.713814 TGGTATCAAGCTCAGAGATGTTCT 59.286 41.667 0.00 0.00 36.25 3.01
3956 6280 5.016051 TGGTATCAAGCTCAGAGATGTTC 57.984 43.478 0.00 0.00 0.00 3.18
3957 6281 5.181748 GTTGGTATCAAGCTCAGAGATGTT 58.818 41.667 0.00 0.00 32.92 2.71
3958 6282 4.679106 CGTTGGTATCAAGCTCAGAGATGT 60.679 45.833 0.00 0.00 32.92 3.06
3959 6283 3.801050 CGTTGGTATCAAGCTCAGAGATG 59.199 47.826 0.00 0.00 32.92 2.90
3960 6284 3.449018 ACGTTGGTATCAAGCTCAGAGAT 59.551 43.478 0.00 0.00 32.92 2.75
3961 6285 2.826128 ACGTTGGTATCAAGCTCAGAGA 59.174 45.455 0.00 0.00 32.92 3.10
3962 6286 3.182967 GACGTTGGTATCAAGCTCAGAG 58.817 50.000 0.00 0.00 32.92 3.35
3963 6287 2.094182 GGACGTTGGTATCAAGCTCAGA 60.094 50.000 0.00 0.00 32.92 3.27
3964 6288 2.271800 GGACGTTGGTATCAAGCTCAG 58.728 52.381 0.00 0.00 32.92 3.35
3965 6289 1.403647 CGGACGTTGGTATCAAGCTCA 60.404 52.381 0.00 0.00 32.92 4.26
3966 6290 1.278238 CGGACGTTGGTATCAAGCTC 58.722 55.000 0.00 0.00 32.92 4.09
3967 6291 0.606604 ACGGACGTTGGTATCAAGCT 59.393 50.000 0.00 0.00 32.92 3.74
3968 6292 0.997196 GACGGACGTTGGTATCAAGC 59.003 55.000 0.00 0.00 32.92 4.01
3969 6293 1.990563 GTGACGGACGTTGGTATCAAG 59.009 52.381 0.00 0.00 32.92 3.02
3970 6294 1.337074 GGTGACGGACGTTGGTATCAA 60.337 52.381 0.00 0.00 0.00 2.57
3971 6295 0.244450 GGTGACGGACGTTGGTATCA 59.756 55.000 0.00 0.00 0.00 2.15
3972 6296 0.529378 AGGTGACGGACGTTGGTATC 59.471 55.000 0.00 0.00 0.00 2.24
3973 6297 0.245539 CAGGTGACGGACGTTGGTAT 59.754 55.000 0.00 0.00 0.00 2.73
3974 6298 1.661480 CAGGTGACGGACGTTGGTA 59.339 57.895 0.00 0.00 0.00 3.25
3975 6299 2.420043 CAGGTGACGGACGTTGGT 59.580 61.111 0.00 0.00 0.00 3.67
3976 6300 3.041940 GCAGGTGACGGACGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
3977 6301 3.041940 GGCAGGTGACGGACGTTG 61.042 66.667 0.00 0.00 0.00 4.10
3978 6302 3.222354 GAGGCAGGTGACGGACGTT 62.222 63.158 0.00 0.00 39.28 3.99
3979 6303 3.681835 GAGGCAGGTGACGGACGT 61.682 66.667 0.00 0.00 39.28 4.34
3980 6304 4.436998 GGAGGCAGGTGACGGACG 62.437 72.222 0.00 0.00 39.28 4.79
3981 6305 4.436998 CGGAGGCAGGTGACGGAC 62.437 72.222 0.00 0.00 0.00 4.79
4007 6331 1.795170 TTTTCTTCGGTGGCTGCTGC 61.795 55.000 7.10 7.10 38.76 5.25
4008 6332 0.239347 CTTTTCTTCGGTGGCTGCTG 59.761 55.000 0.00 0.00 0.00 4.41
4009 6333 0.108585 TCTTTTCTTCGGTGGCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
4010 6334 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
4011 6335 2.813754 TCATTCTTTTCTTCGGTGGCTG 59.186 45.455 0.00 0.00 0.00 4.85
4012 6336 2.814336 GTCATTCTTTTCTTCGGTGGCT 59.186 45.455 0.00 0.00 0.00 4.75
4013 6337 2.412847 CGTCATTCTTTTCTTCGGTGGC 60.413 50.000 0.00 0.00 0.00 5.01
4014 6338 3.064207 TCGTCATTCTTTTCTTCGGTGG 58.936 45.455 0.00 0.00 0.00 4.61
4015 6339 4.725556 TTCGTCATTCTTTTCTTCGGTG 57.274 40.909 0.00 0.00 0.00 4.94
4016 6340 4.994852 TGATTCGTCATTCTTTTCTTCGGT 59.005 37.500 0.00 0.00 0.00 4.69
4017 6341 5.316770 GTGATTCGTCATTCTTTTCTTCGG 58.683 41.667 0.00 0.00 0.00 4.30
4018 6342 5.120830 AGGTGATTCGTCATTCTTTTCTTCG 59.879 40.000 0.00 0.00 0.00 3.79
4019 6343 6.402658 GGAGGTGATTCGTCATTCTTTTCTTC 60.403 42.308 0.00 0.00 33.18 2.87
4020 6344 5.412904 GGAGGTGATTCGTCATTCTTTTCTT 59.587 40.000 0.00 0.00 33.18 2.52
4021 6345 4.938226 GGAGGTGATTCGTCATTCTTTTCT 59.062 41.667 0.00 0.00 33.18 2.52
4022 6346 4.938226 AGGAGGTGATTCGTCATTCTTTTC 59.062 41.667 0.00 0.00 33.18 2.29
4023 6347 4.911390 AGGAGGTGATTCGTCATTCTTTT 58.089 39.130 0.00 0.00 33.18 2.27
4024 6348 4.020218 TGAGGAGGTGATTCGTCATTCTTT 60.020 41.667 0.00 0.00 37.14 2.52
4025 6349 3.515502 TGAGGAGGTGATTCGTCATTCTT 59.484 43.478 0.00 0.00 37.14 2.52
4026 6350 3.099905 TGAGGAGGTGATTCGTCATTCT 58.900 45.455 0.00 0.00 37.14 2.40
4027 6351 3.190874 GTGAGGAGGTGATTCGTCATTC 58.809 50.000 2.32 0.00 42.06 2.67
4028 6352 2.093447 GGTGAGGAGGTGATTCGTCATT 60.093 50.000 2.32 0.00 42.06 2.57
4029 6353 1.482593 GGTGAGGAGGTGATTCGTCAT 59.517 52.381 2.32 0.00 42.06 3.06
4030 6354 0.895530 GGTGAGGAGGTGATTCGTCA 59.104 55.000 0.00 0.00 39.04 4.35
4031 6355 0.175989 GGGTGAGGAGGTGATTCGTC 59.824 60.000 0.00 0.00 33.68 4.20
4032 6356 0.544357 TGGGTGAGGAGGTGATTCGT 60.544 55.000 0.00 0.00 0.00 3.85
4033 6357 0.613260 TTGGGTGAGGAGGTGATTCG 59.387 55.000 0.00 0.00 0.00 3.34
4034 6358 1.680249 GCTTGGGTGAGGAGGTGATTC 60.680 57.143 0.00 0.00 0.00 2.52
4035 6359 0.329596 GCTTGGGTGAGGAGGTGATT 59.670 55.000 0.00 0.00 0.00 2.57
4036 6360 0.548682 AGCTTGGGTGAGGAGGTGAT 60.549 55.000 0.00 0.00 0.00 3.06
4037 6361 1.152030 AGCTTGGGTGAGGAGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
4038 6362 1.298014 GAGCTTGGGTGAGGAGGTG 59.702 63.158 0.00 0.00 0.00 4.00
4039 6363 2.286523 CGAGCTTGGGTGAGGAGGT 61.287 63.158 0.00 0.00 0.00 3.85
4040 6364 1.984570 TCGAGCTTGGGTGAGGAGG 60.985 63.158 0.00 0.00 0.00 4.30
4041 6365 1.216710 GTCGAGCTTGGGTGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
4042 6366 2.636412 CGTCGAGCTTGGGTGAGGA 61.636 63.158 0.00 0.00 0.00 3.71
4043 6367 1.949847 ATCGTCGAGCTTGGGTGAGG 61.950 60.000 0.00 0.00 0.00 3.86
4044 6368 0.803768 CATCGTCGAGCTTGGGTGAG 60.804 60.000 0.00 0.00 0.00 3.51
4045 6369 1.215382 CATCGTCGAGCTTGGGTGA 59.785 57.895 0.00 0.00 0.00 4.02
4046 6370 2.456119 GCATCGTCGAGCTTGGGTG 61.456 63.158 0.00 0.00 0.00 4.61
4047 6371 2.125512 GCATCGTCGAGCTTGGGT 60.126 61.111 0.00 0.00 0.00 4.51
4048 6372 1.880340 GAGCATCGTCGAGCTTGGG 60.880 63.158 16.67 0.00 42.04 4.12
4049 6373 1.880340 GGAGCATCGTCGAGCTTGG 60.880 63.158 16.67 0.00 42.04 3.61
4050 6374 0.529337 ATGGAGCATCGTCGAGCTTG 60.529 55.000 16.67 5.50 42.04 4.01
4051 6375 0.249238 GATGGAGCATCGTCGAGCTT 60.249 55.000 16.67 5.31 42.04 3.74
4052 6376 1.361993 GATGGAGCATCGTCGAGCT 59.638 57.895 15.89 15.89 45.25 4.09
4053 6377 1.663074 GGATGGAGCATCGTCGAGC 60.663 63.158 0.00 4.89 41.35 5.03
4054 6378 1.006805 GGGATGGAGCATCGTCGAG 60.007 63.158 0.00 0.00 41.35 4.04
4055 6379 1.455773 AGGGATGGAGCATCGTCGA 60.456 57.895 0.00 0.00 41.35 4.20
4056 6380 1.300465 CAGGGATGGAGCATCGTCG 60.300 63.158 0.00 0.00 41.35 5.12
4057 6381 0.683973 ATCAGGGATGGAGCATCGTC 59.316 55.000 0.00 0.00 41.35 4.20
4058 6382 2.015456 TATCAGGGATGGAGCATCGT 57.985 50.000 0.00 0.00 41.35 3.73
4059 6383 2.902523 CATATCAGGGATGGAGCATCG 58.097 52.381 0.00 0.00 41.35 3.84
4060 6384 2.026542 TGCATATCAGGGATGGAGCATC 60.027 50.000 0.00 0.00 39.87 3.91
4061 6385 1.990327 TGCATATCAGGGATGGAGCAT 59.010 47.619 0.00 0.00 0.00 3.79
4062 6386 1.350019 CTGCATATCAGGGATGGAGCA 59.650 52.381 0.00 0.00 36.19 4.26
4063 6387 2.110901 CTGCATATCAGGGATGGAGC 57.889 55.000 0.00 0.00 36.19 4.70
4064 6388 1.629353 AGCTGCATATCAGGGATGGAG 59.371 52.381 1.02 0.29 43.49 3.86
4065 6389 1.738474 AGCTGCATATCAGGGATGGA 58.262 50.000 1.02 0.00 43.06 3.41
4066 6390 2.581216 AAGCTGCATATCAGGGATGG 57.419 50.000 1.02 0.00 43.06 3.51
4067 6391 3.434641 CGTAAAGCTGCATATCAGGGATG 59.565 47.826 1.02 0.00 43.06 3.51
4068 6392 3.557898 CCGTAAAGCTGCATATCAGGGAT 60.558 47.826 1.02 0.00 43.06 3.85
4069 6393 2.224281 CCGTAAAGCTGCATATCAGGGA 60.224 50.000 1.02 0.00 43.06 4.20
4070 6394 2.146342 CCGTAAAGCTGCATATCAGGG 58.854 52.381 1.02 0.00 43.06 4.45
4071 6395 2.802816 GTCCGTAAAGCTGCATATCAGG 59.197 50.000 1.02 0.00 43.06 3.86
4072 6396 2.802816 GGTCCGTAAAGCTGCATATCAG 59.197 50.000 1.02 0.00 45.62 2.90
4073 6397 2.434336 AGGTCCGTAAAGCTGCATATCA 59.566 45.455 1.02 0.00 0.00 2.15
4074 6398 3.060602 GAGGTCCGTAAAGCTGCATATC 58.939 50.000 1.02 0.00 0.00 1.63
4075 6399 2.224305 GGAGGTCCGTAAAGCTGCATAT 60.224 50.000 1.02 0.00 35.46 1.78
4076 6400 1.138266 GGAGGTCCGTAAAGCTGCATA 59.862 52.381 1.02 0.00 35.46 3.14
4077 6401 0.107654 GGAGGTCCGTAAAGCTGCAT 60.108 55.000 1.02 0.00 35.46 3.96
4078 6402 1.295423 GGAGGTCCGTAAAGCTGCA 59.705 57.895 1.02 0.00 35.46 4.41
4079 6403 0.321298 TTGGAGGTCCGTAAAGCTGC 60.321 55.000 0.00 0.00 39.43 5.25
4080 6404 1.676014 CCTTGGAGGTCCGTAAAGCTG 60.676 57.143 0.00 0.00 39.43 4.24
4081 6405 0.613777 CCTTGGAGGTCCGTAAAGCT 59.386 55.000 0.00 0.00 39.43 3.74
4082 6406 3.154589 CCTTGGAGGTCCGTAAAGC 57.845 57.895 0.00 0.00 39.43 3.51
4100 6424 3.130633 GGTTTCATTTTTGGTGAGCCAC 58.869 45.455 0.00 0.00 46.01 5.01
4101 6425 2.103941 GGGTTTCATTTTTGGTGAGCCA 59.896 45.455 0.00 0.00 44.38 4.75
4102 6426 2.368548 AGGGTTTCATTTTTGGTGAGCC 59.631 45.455 0.00 0.00 0.00 4.70
4103 6427 3.751479 AGGGTTTCATTTTTGGTGAGC 57.249 42.857 0.00 0.00 0.00 4.26
4104 6428 5.538118 GGTAAGGGTTTCATTTTTGGTGAG 58.462 41.667 0.00 0.00 0.00 3.51
4105 6429 4.038162 CGGTAAGGGTTTCATTTTTGGTGA 59.962 41.667 0.00 0.00 0.00 4.02
4106 6430 4.202172 ACGGTAAGGGTTTCATTTTTGGTG 60.202 41.667 0.00 0.00 0.00 4.17
4107 6431 3.962063 ACGGTAAGGGTTTCATTTTTGGT 59.038 39.130 0.00 0.00 0.00 3.67
4108 6432 4.594123 ACGGTAAGGGTTTCATTTTTGG 57.406 40.909 0.00 0.00 0.00 3.28
4109 6433 5.593010 TCAACGGTAAGGGTTTCATTTTTG 58.407 37.500 0.00 0.00 0.00 2.44
4110 6434 5.855740 TCAACGGTAAGGGTTTCATTTTT 57.144 34.783 0.00 0.00 0.00 1.94
4111 6435 5.593968 GTTCAACGGTAAGGGTTTCATTTT 58.406 37.500 0.00 0.00 0.00 1.82
4112 6436 4.261280 CGTTCAACGGTAAGGGTTTCATTT 60.261 41.667 0.61 0.00 38.08 2.32
4113 6437 3.251487 CGTTCAACGGTAAGGGTTTCATT 59.749 43.478 0.61 0.00 38.08 2.57
4114 6438 2.809696 CGTTCAACGGTAAGGGTTTCAT 59.190 45.455 0.61 0.00 38.08 2.57
4115 6439 2.158986 TCGTTCAACGGTAAGGGTTTCA 60.159 45.455 10.69 0.00 42.81 2.69
4116 6440 2.482864 TCGTTCAACGGTAAGGGTTTC 58.517 47.619 10.69 0.00 42.81 2.78
4117 6441 2.618442 TCGTTCAACGGTAAGGGTTT 57.382 45.000 10.69 0.00 42.81 3.27
4118 6442 2.618442 TTCGTTCAACGGTAAGGGTT 57.382 45.000 10.69 0.00 42.81 4.11
4119 6443 2.037511 TGATTCGTTCAACGGTAAGGGT 59.962 45.455 10.69 0.00 42.81 4.34
4120 6444 2.671396 CTGATTCGTTCAACGGTAAGGG 59.329 50.000 10.69 0.00 42.81 3.95
4121 6445 3.367025 GTCTGATTCGTTCAACGGTAAGG 59.633 47.826 10.69 0.00 42.81 2.69
4122 6446 3.367025 GGTCTGATTCGTTCAACGGTAAG 59.633 47.826 10.69 2.29 42.81 2.34
4123 6447 3.243805 TGGTCTGATTCGTTCAACGGTAA 60.244 43.478 10.69 0.00 42.81 2.85
4124 6448 2.296752 TGGTCTGATTCGTTCAACGGTA 59.703 45.455 10.69 0.00 42.81 4.02
4125 6449 1.069513 TGGTCTGATTCGTTCAACGGT 59.930 47.619 10.69 0.00 42.81 4.83
4126 6450 1.459592 GTGGTCTGATTCGTTCAACGG 59.540 52.381 10.69 0.00 42.81 4.44
4127 6451 2.131972 TGTGGTCTGATTCGTTCAACG 58.868 47.619 2.64 2.64 44.19 4.10
4128 6452 3.311322 TGTTGTGGTCTGATTCGTTCAAC 59.689 43.478 0.00 0.00 32.78 3.18
4129 6453 3.536570 TGTTGTGGTCTGATTCGTTCAA 58.463 40.909 0.00 0.00 32.78 2.69
4130 6454 3.186702 TGTTGTGGTCTGATTCGTTCA 57.813 42.857 0.00 0.00 0.00 3.18
4131 6455 4.749245 ATTGTTGTGGTCTGATTCGTTC 57.251 40.909 0.00 0.00 0.00 3.95
4132 6456 5.048991 GGTTATTGTTGTGGTCTGATTCGTT 60.049 40.000 0.00 0.00 0.00 3.85
4133 6457 4.454504 GGTTATTGTTGTGGTCTGATTCGT 59.545 41.667 0.00 0.00 0.00 3.85
4134 6458 4.454161 TGGTTATTGTTGTGGTCTGATTCG 59.546 41.667 0.00 0.00 0.00 3.34
4135 6459 5.616866 CGTGGTTATTGTTGTGGTCTGATTC 60.617 44.000 0.00 0.00 0.00 2.52
4136 6460 4.215399 CGTGGTTATTGTTGTGGTCTGATT 59.785 41.667 0.00 0.00 0.00 2.57
4137 6461 3.751175 CGTGGTTATTGTTGTGGTCTGAT 59.249 43.478 0.00 0.00 0.00 2.90
4138 6462 3.135225 CGTGGTTATTGTTGTGGTCTGA 58.865 45.455 0.00 0.00 0.00 3.27
4139 6463 2.225491 CCGTGGTTATTGTTGTGGTCTG 59.775 50.000 0.00 0.00 0.00 3.51
4140 6464 2.500229 CCGTGGTTATTGTTGTGGTCT 58.500 47.619 0.00 0.00 0.00 3.85
4163 6496 1.503542 CGGGCGTACGTACAGACTT 59.496 57.895 24.50 0.00 0.00 3.01
4219 6555 3.342377 TTAGCCGTCAATGGAATCACA 57.658 42.857 0.00 0.00 0.00 3.58
4232 6568 3.129813 TCGCGATGGATATTATTAGCCGT 59.870 43.478 3.71 0.00 36.63 5.68
4233 6569 3.486108 GTCGCGATGGATATTATTAGCCG 59.514 47.826 14.06 0.00 36.63 5.52
4273 6609 1.283613 CCACAATGGTAGGCCCTAACA 59.716 52.381 11.73 11.73 38.08 2.41
4291 6627 2.731691 GAACGCTCACAAGAGGCCCA 62.732 60.000 0.00 0.00 42.33 5.36
4341 6677 1.178534 GCACCAAAACTAGCCAGCCA 61.179 55.000 0.00 0.00 0.00 4.75
4372 6708 1.308069 ACAAGCTAGCCCAATGTGCG 61.308 55.000 12.13 0.00 0.00 5.34
4411 6747 5.645929 ACGAGCCAATGTTCATATACACAAA 59.354 36.000 0.00 0.00 0.00 2.83
4413 6749 4.570369 CACGAGCCAATGTTCATATACACA 59.430 41.667 0.00 0.00 0.00 3.72
4474 6810 1.202582 CCCTTCTGAAGACGACGACAT 59.797 52.381 18.68 0.00 0.00 3.06
4475 6811 0.596577 CCCTTCTGAAGACGACGACA 59.403 55.000 18.68 0.00 0.00 4.35
4506 6844 0.394899 GCCTTGAGGGTAGCAGCAAT 60.395 55.000 0.00 0.00 37.43 3.56
4563 6901 1.141881 GATCGTGGTGCTCGATGGT 59.858 57.895 5.58 0.00 45.90 3.55
4568 6906 2.291843 GATGTGATCGTGGTGCTCG 58.708 57.895 0.00 0.00 0.00 5.03
4615 6953 3.089284 CAAACCATCAAAGGGGTAGGAC 58.911 50.000 0.00 0.00 36.05 3.85
4619 6957 1.431243 AGGCAAACCATCAAAGGGGTA 59.569 47.619 0.00 0.00 36.05 3.69
4621 6959 0.609662 CAGGCAAACCATCAAAGGGG 59.390 55.000 0.00 0.00 39.06 4.79
4626 6964 1.344114 GCTTTCCAGGCAAACCATCAA 59.656 47.619 0.00 0.00 39.06 2.57
4630 6968 3.869481 GGCTTTCCAGGCAAACCA 58.131 55.556 0.00 0.00 45.26 3.67
4689 7027 3.367910 GGAGTACTTGAGAGAGCCAACTG 60.368 52.174 0.00 0.00 0.00 3.16
4719 7057 2.127232 AAGGTTGTGGTGGCAGTGC 61.127 57.895 6.55 6.55 0.00 4.40
4726 7064 5.514274 ACAAATTCTACAAGGTTGTGGTG 57.486 39.130 5.59 0.19 42.31 4.17
4763 7102 4.277423 TGTCCGAATGAGCGAGTTCATATA 59.723 41.667 2.96 0.00 36.81 0.86
4765 7104 2.425668 TGTCCGAATGAGCGAGTTCATA 59.574 45.455 2.96 0.00 36.81 2.15
4769 7108 2.427453 AGTATGTCCGAATGAGCGAGTT 59.573 45.455 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.