Multiple sequence alignment - TraesCS4B01G298300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G298300 chr4B 100.000 4344 0 0 1 4344 583765255 583769598 0.000000e+00 8022.0
1 TraesCS4B01G298300 chr4B 86.364 1804 118 63 90 1808 584125610 584127370 0.000000e+00 1851.0
2 TraesCS4B01G298300 chr4B 86.253 1804 121 62 90 1808 584054245 584056006 0.000000e+00 1840.0
3 TraesCS4B01G298300 chr4B 90.608 1267 81 21 2152 3396 584056168 584057418 0.000000e+00 1646.0
4 TraesCS4B01G298300 chr4B 90.916 1233 77 20 2152 3365 584127527 584128743 0.000000e+00 1624.0
5 TraesCS4B01G298300 chr4B 91.637 849 59 7 2507 3351 584527786 584526946 0.000000e+00 1164.0
6 TraesCS4B01G298300 chr4B 84.083 911 127 12 3398 4298 584057697 584058599 0.000000e+00 863.0
7 TraesCS4B01G298300 chr4B 87.847 288 28 6 2105 2387 584528276 584527991 9.000000e-87 331.0
8 TraesCS4B01G298300 chr4B 82.412 199 22 10 1709 1894 584528549 584528351 1.250000e-35 161.0
9 TraesCS4B01G298300 chr4A 91.502 2130 143 17 2102 4205 4239520 4237403 0.000000e+00 2896.0
10 TraesCS4B01G298300 chr4A 88.784 2229 189 34 2102 4311 4473219 4471033 0.000000e+00 2675.0
11 TraesCS4B01G298300 chr4A 87.465 2130 108 54 6 2071 4475578 4473544 0.000000e+00 2307.0
12 TraesCS4B01G298300 chr4A 90.411 1533 79 19 1 1497 4241809 4240309 0.000000e+00 1954.0
13 TraesCS4B01G298300 chr4A 90.998 1233 64 19 360 1554 4157833 4159056 0.000000e+00 1618.0
14 TraesCS4B01G298300 chr4A 90.354 1213 92 12 2158 3365 4194494 4193302 0.000000e+00 1568.0
15 TraesCS4B01G298300 chr4A 90.204 1174 63 21 351 1475 4196419 4195249 0.000000e+00 1483.0
16 TraesCS4B01G298300 chr4A 87.234 893 86 10 360 1224 4005631 4004739 0.000000e+00 992.0
17 TraesCS4B01G298300 chr4A 87.073 410 47 5 3891 4297 700332214 700332620 3.960000e-125 459.0
18 TraesCS4B01G298300 chr4A 85.610 410 51 7 3892 4298 628934256 628934660 1.440000e-114 424.0
19 TraesCS4B01G298300 chr4A 95.154 227 6 2 1501 1723 4240031 4239806 1.920000e-93 353.0
20 TraesCS4B01G298300 chr4A 88.581 289 30 2 2102 2388 4159875 4160162 8.940000e-92 348.0
21 TraesCS4B01G298300 chr4A 83.824 204 11 7 1473 1656 4194992 4194791 1.610000e-39 174.0
22 TraesCS4B01G298300 chr4A 85.802 162 10 2 1722 1883 4239693 4239545 4.500000e-35 159.0
23 TraesCS4B01G298300 chr4A 90.756 119 9 1 1694 1810 4159573 4159691 1.620000e-34 158.0
24 TraesCS4B01G298300 chr4D 91.246 1782 123 16 2152 3925 466294111 466295867 0.000000e+00 2396.0
25 TraesCS4B01G298300 chr4D 90.757 1677 114 23 2152 3817 466335973 466337619 0.000000e+00 2200.0
26 TraesCS4B01G298300 chr4D 88.354 1786 103 52 83 1808 466292211 466293951 0.000000e+00 2049.0
27 TraesCS4B01G298300 chr4D 87.091 1805 102 52 90 1808 466334087 466335846 0.000000e+00 1921.0
28 TraesCS4B01G298300 chr4D 92.129 1245 61 18 363 1581 466730868 466729635 0.000000e+00 1722.0
29 TraesCS4B01G298300 chr4D 91.667 1224 79 18 2153 3365 466405298 466406509 0.000000e+00 1674.0
30 TraesCS4B01G298300 chr4D 86.844 1543 96 46 84 1574 466403088 466404575 0.000000e+00 1626.0
31 TraesCS4B01G298300 chr4D 93.262 846 52 2 2507 3351 466728281 466727440 0.000000e+00 1242.0
32 TraesCS4B01G298300 chr4D 86.936 421 46 8 3881 4297 466337619 466338034 8.510000e-127 464.0
33 TraesCS4B01G298300 chr4D 89.007 282 28 2 2108 2387 466728749 466728469 3.220000e-91 346.0
34 TraesCS4B01G298300 chr4D 92.029 138 3 4 1587 1723 466404874 466405004 2.060000e-43 187.0
35 TraesCS4B01G298300 chr4D 93.750 112 6 1 1703 1813 466729035 466728924 2.690000e-37 167.0
36 TraesCS4B01G298300 chr4D 92.391 92 5 2 1722 1813 466405060 466405149 3.530000e-26 130.0
37 TraesCS4B01G298300 chr4D 97.222 36 1 0 1 36 466292149 466292184 1.300000e-05 62.1
38 TraesCS4B01G298300 chr1A 87.255 408 47 4 3892 4297 556307229 556306825 1.100000e-125 460.0
39 TraesCS4B01G298300 chrUn 86.375 411 50 5 3891 4298 291833616 291833209 1.110000e-120 444.0
40 TraesCS4B01G298300 chrUn 88.189 381 20 10 989 1344 479224296 479223916 8.630000e-117 431.0
41 TraesCS4B01G298300 chr7D 86.967 399 47 4 3903 4298 29270568 29270172 1.110000e-120 444.0
42 TraesCS4B01G298300 chr7B 86.308 409 47 8 3892 4296 158898974 158899377 1.850000e-118 436.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G298300 chr4B 583765255 583769598 4343 False 8022.000000 8022 100.000000 1 4344 1 chr4B.!!$F1 4343
1 TraesCS4B01G298300 chr4B 584125610 584128743 3133 False 1737.500000 1851 88.640000 90 3365 2 chr4B.!!$F3 3275
2 TraesCS4B01G298300 chr4B 584054245 584058599 4354 False 1449.666667 1840 86.981333 90 4298 3 chr4B.!!$F2 4208
3 TraesCS4B01G298300 chr4B 584526946 584528549 1603 True 552.000000 1164 87.298667 1709 3351 3 chr4B.!!$R1 1642
4 TraesCS4B01G298300 chr4A 4471033 4475578 4545 True 2491.000000 2675 88.124500 6 4311 2 chr4A.!!$R4 4305
5 TraesCS4B01G298300 chr4A 4237403 4241809 4406 True 1340.500000 2896 90.717250 1 4205 4 chr4A.!!$R3 4204
6 TraesCS4B01G298300 chr4A 4193302 4196419 3117 True 1075.000000 1568 88.127333 351 3365 3 chr4A.!!$R2 3014
7 TraesCS4B01G298300 chr4A 4004739 4005631 892 True 992.000000 992 87.234000 360 1224 1 chr4A.!!$R1 864
8 TraesCS4B01G298300 chr4A 4157833 4160162 2329 False 708.000000 1618 90.111667 360 2388 3 chr4A.!!$F3 2028
9 TraesCS4B01G298300 chr4D 466334087 466338034 3947 False 1528.333333 2200 88.261333 90 4297 3 chr4D.!!$F2 4207
10 TraesCS4B01G298300 chr4D 466292149 466295867 3718 False 1502.366667 2396 92.274000 1 3925 3 chr4D.!!$F1 3924
11 TraesCS4B01G298300 chr4D 466403088 466406509 3421 False 904.250000 1674 90.732750 84 3365 4 chr4D.!!$F3 3281
12 TraesCS4B01G298300 chr4D 466727440 466730868 3428 True 869.250000 1722 92.037000 363 3351 4 chr4D.!!$R1 2988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 414 0.033366 TCGATCACCACACACACAGG 59.967 55.000 0.00 0.0 0.0 4.00 F
1116 1199 0.318441 ACTACTGCAAGCTGAGCGAA 59.682 50.000 0.00 0.0 37.6 4.70 F
1395 1523 1.530293 GCAAGTTCACACAGAGCTGAG 59.470 52.381 4.21 0.0 37.9 3.35 F
1993 3652 0.333993 ACCCATTTGCAGAGCTCCAT 59.666 50.000 10.93 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 3481 0.592637 TGTGGAACTGCTGAAATGCG 59.407 50.0 0.00 0.0 38.04 4.73 R
1972 3631 0.610232 GGAGCTCTGCAAATGGGTGT 60.610 55.0 14.64 0.0 0.00 4.16 R
2342 4314 0.863956 AGAGGAGGGATCGGAGGAAT 59.136 55.0 0.00 0.0 0.00 3.01 R
3763 6162 0.107017 GCAGGCCTTGAGGATAGCAA 60.107 55.0 0.00 0.0 37.39 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.798776 AGAAAAAGAGGATGCGTGCG 59.201 50.000 0.00 0.00 0.00 5.34
37 38 0.179189 GAAAAAGAGGATGCGTGCGG 60.179 55.000 0.00 0.00 0.00 5.69
38 39 1.586154 AAAAAGAGGATGCGTGCGGG 61.586 55.000 0.00 0.00 0.00 6.13
39 40 2.748058 AAAAGAGGATGCGTGCGGGT 62.748 55.000 0.00 0.00 0.00 5.28
187 201 6.752285 TCCCTAACCCTATAAATACACCAC 57.248 41.667 0.00 0.00 0.00 4.16
291 320 1.738365 GCAAGAATCAGCTCTCTCGCA 60.738 52.381 0.00 0.00 0.00 5.10
292 321 2.195096 CAAGAATCAGCTCTCTCGCAG 58.805 52.381 0.00 0.00 0.00 5.18
293 322 0.102844 AGAATCAGCTCTCTCGCAGC 59.897 55.000 0.00 0.00 37.12 5.25
294 323 0.875474 GAATCAGCTCTCTCGCAGCC 60.875 60.000 0.00 0.00 37.63 4.85
295 324 1.329171 AATCAGCTCTCTCGCAGCCT 61.329 55.000 0.00 0.00 37.63 4.58
302 331 1.064946 CTCTCGCAGCCTTCCTACG 59.935 63.158 0.00 0.00 0.00 3.51
374 414 0.033366 TCGATCACCACACACACAGG 59.967 55.000 0.00 0.00 0.00 4.00
405 448 1.471287 CAACACTCGGGTAGACGATGA 59.529 52.381 0.00 0.00 42.62 2.92
463 506 4.436998 CGTGCCTCCGGTGTCTCC 62.437 72.222 0.00 0.00 0.00 3.71
650 693 2.169330 GACTACTCCTGGAAGAACCGT 58.831 52.381 0.00 0.00 42.61 4.83
871 914 1.590525 GCATCGTCACCGGCGATTA 60.591 57.895 9.30 0.00 45.38 1.75
932 990 5.300969 TGCATGCTTGTTTGAAGATACTC 57.699 39.130 20.33 0.00 0.00 2.59
1116 1199 0.318441 ACTACTGCAAGCTGAGCGAA 59.682 50.000 0.00 0.00 37.60 4.70
1231 1336 2.091541 ACCAAGGTGCGTATTGATTGG 58.908 47.619 0.00 0.00 42.29 3.16
1234 1343 3.192422 CCAAGGTGCGTATTGATTGGAAA 59.808 43.478 0.00 0.00 39.63 3.13
1395 1523 1.530293 GCAAGTTCACACAGAGCTGAG 59.470 52.381 4.21 0.00 37.90 3.35
1483 1873 9.571816 TGTCTGAATAATGCATACCATATTTGA 57.428 29.630 0.00 1.34 32.67 2.69
1497 2161 5.422970 ACCATATTTGATGACATGTGCCTTT 59.577 36.000 1.15 0.00 0.00 3.11
1784 3389 2.288666 TGCGACAAAGATTATCTGCCC 58.711 47.619 0.00 0.00 0.00 5.36
1850 3481 5.635866 GTCCTAACGAACTTACTGGAGTAC 58.364 45.833 0.00 0.00 0.00 2.73
1867 3498 1.804151 GTACGCATTTCAGCAGTTCCA 59.196 47.619 0.00 0.00 0.00 3.53
1895 3527 8.807948 AAACATAGTATAATCAGTGCTGGTTT 57.192 30.769 2.83 0.00 35.26 3.27
1896 3528 9.899661 AAACATAGTATAATCAGTGCTGGTTTA 57.100 29.630 2.83 1.46 35.26 2.01
1963 3622 7.958088 AGAAAACCATAATACTCTAGAGCTCC 58.042 38.462 19.97 0.00 0.00 4.70
1964 3623 7.565398 AGAAAACCATAATACTCTAGAGCTCCA 59.435 37.037 19.97 3.51 0.00 3.86
1965 3624 7.863901 AAACCATAATACTCTAGAGCTCCAT 57.136 36.000 19.97 5.75 0.00 3.41
1972 3631 6.798427 ATACTCTAGAGCTCCATCAAAACA 57.202 37.500 19.97 0.00 0.00 2.83
1975 3634 4.569943 TCTAGAGCTCCATCAAAACACAC 58.430 43.478 10.93 0.00 0.00 3.82
1976 3635 2.508526 AGAGCTCCATCAAAACACACC 58.491 47.619 10.93 0.00 0.00 4.16
1990 3649 0.524862 CACACCCATTTGCAGAGCTC 59.475 55.000 5.27 5.27 0.00 4.09
1991 3650 0.610232 ACACCCATTTGCAGAGCTCC 60.610 55.000 10.93 0.00 0.00 4.70
1993 3652 0.333993 ACCCATTTGCAGAGCTCCAT 59.666 50.000 10.93 0.00 0.00 3.41
1994 3653 1.030457 CCCATTTGCAGAGCTCCATC 58.970 55.000 10.93 0.00 0.00 3.51
1995 3654 1.030457 CCATTTGCAGAGCTCCATCC 58.970 55.000 10.93 0.00 0.00 3.51
1996 3655 0.661552 CATTTGCAGAGCTCCATCCG 59.338 55.000 10.93 0.00 0.00 4.18
2036 3695 6.183360 GCCCAGTTCTCACCAGATAGTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
2056 3715 1.903183 ACTCTAGAACCCAAGCTGGAC 59.097 52.381 0.00 0.00 40.96 4.02
2058 3717 1.902508 TCTAGAACCCAAGCTGGACTG 59.097 52.381 0.00 0.00 40.96 3.51
2083 4052 7.342284 TGAAGACCTGAAATTAGTAGTAGGAGG 59.658 40.741 0.00 0.00 0.00 4.30
2084 4053 5.599242 AGACCTGAAATTAGTAGTAGGAGGC 59.401 44.000 0.00 0.00 0.00 4.70
2085 4054 5.530243 ACCTGAAATTAGTAGTAGGAGGCT 58.470 41.667 0.00 0.00 0.00 4.58
2086 4055 6.680540 ACCTGAAATTAGTAGTAGGAGGCTA 58.319 40.000 0.00 0.00 0.00 3.93
2087 4056 6.778559 ACCTGAAATTAGTAGTAGGAGGCTAG 59.221 42.308 0.00 0.00 0.00 3.42
2088 4057 6.209788 CCTGAAATTAGTAGTAGGAGGCTAGG 59.790 46.154 0.00 0.00 0.00 3.02
2089 4058 6.919158 TGAAATTAGTAGTAGGAGGCTAGGA 58.081 40.000 0.00 0.00 0.00 2.94
2090 4059 7.005296 TGAAATTAGTAGTAGGAGGCTAGGAG 58.995 42.308 0.00 0.00 0.00 3.69
2091 4060 2.963599 AGTAGTAGGAGGCTAGGAGC 57.036 55.000 0.00 0.00 41.46 4.70
2092 4061 2.136863 AGTAGTAGGAGGCTAGGAGCA 58.863 52.381 0.21 0.00 44.75 4.26
2093 4062 2.514582 AGTAGTAGGAGGCTAGGAGCAA 59.485 50.000 0.21 0.00 44.75 3.91
2094 4063 1.783071 AGTAGGAGGCTAGGAGCAAC 58.217 55.000 0.21 0.00 44.75 4.17
2095 4064 1.289530 AGTAGGAGGCTAGGAGCAACT 59.710 52.381 0.21 0.00 44.75 3.16
2096 4065 1.410882 GTAGGAGGCTAGGAGCAACTG 59.589 57.143 0.21 0.00 44.75 3.16
2097 4066 0.980231 AGGAGGCTAGGAGCAACTGG 60.980 60.000 0.21 0.00 44.75 4.00
2098 4067 0.978146 GGAGGCTAGGAGCAACTGGA 60.978 60.000 0.21 0.00 44.75 3.86
2099 4068 0.905357 GAGGCTAGGAGCAACTGGAA 59.095 55.000 0.21 0.00 44.75 3.53
2100 4069 1.488393 GAGGCTAGGAGCAACTGGAAT 59.512 52.381 0.21 0.00 44.75 3.01
2104 4073 3.118223 GGCTAGGAGCAACTGGAATACTT 60.118 47.826 0.21 0.00 44.75 2.24
2125 4095 2.431942 GCGTCGTGATTCCGTGGT 60.432 61.111 0.00 0.00 0.00 4.16
2127 4097 1.372499 CGTCGTGATTCCGTGGTGT 60.372 57.895 0.00 0.00 0.00 4.16
2162 4133 4.993584 AGATCGAGATGTGTTTGATATGGC 59.006 41.667 0.00 0.00 0.00 4.40
2210 4182 1.454847 TTTGTTTGCAGGCGAGGGT 60.455 52.632 0.00 0.00 0.00 4.34
2300 4272 3.519107 TGCCATTCTCCATGTTCTACTCA 59.481 43.478 0.00 0.00 0.00 3.41
2342 4314 4.344865 GAGCGGCCCAACCAAGGA 62.345 66.667 0.00 0.00 39.03 3.36
2346 4318 2.052104 CGGCCCAACCAAGGATTCC 61.052 63.158 0.00 0.00 39.03 3.01
2406 4378 3.925379 TGTGTACGTCAGAATTCATGCT 58.075 40.909 8.44 0.00 0.00 3.79
2505 4582 0.257905 ATGCTGGAGACCATGCATGT 59.742 50.000 24.58 13.09 42.31 3.21
2555 4638 3.451141 TGTGTTTTGAATTCTGGTGGC 57.549 42.857 7.05 0.00 0.00 5.01
2625 4708 2.125269 CCGCTGGGAAAGTACGGG 60.125 66.667 0.00 0.00 40.18 5.28
2688 4771 2.368192 ATGGCCATCCTCCCGGAA 60.368 61.111 14.09 0.00 44.02 4.30
2742 4825 4.082523 TTCAAGAGGGCCTCCGCG 62.083 66.667 29.62 17.92 37.94 6.46
2779 4862 1.915614 GAACGGCGTAGTCCTCGACA 61.916 60.000 15.20 0.00 35.94 4.35
2820 4903 1.122019 ACCTTGTCTTCCTCGCCACT 61.122 55.000 0.00 0.00 0.00 4.00
2846 4929 2.129555 GAGGGCAAGGACAAGCTCCA 62.130 60.000 0.00 0.00 42.46 3.86
2950 5034 3.546815 CCGATTATCTTTTGCTCCAAGCG 60.547 47.826 0.00 0.00 46.26 4.68
2999 5093 5.163281 TGACCTGCAATTTATTTTGGCAT 57.837 34.783 0.00 0.00 0.00 4.40
3229 5323 1.552337 CACTGCATCTCCACCTACAGT 59.448 52.381 0.00 0.00 38.84 3.55
3370 5464 2.098607 ACGTACGCATAGCACAGTACAT 59.901 45.455 16.72 0.00 39.33 2.29
3384 5488 5.220912 GCACAGTACATACATCCTACGTACA 60.221 44.000 0.00 0.00 35.89 2.90
3435 5825 1.789751 CCGAGTCTGTACGTACGCA 59.210 57.895 20.18 5.21 0.00 5.24
3510 5901 9.056799 TCTATTGGTGGCTAATAATATCCATCA 57.943 33.333 0.00 0.00 36.80 3.07
3532 5925 3.871594 ACGAACAAGAATATGCTAGTGGC 59.128 43.478 0.00 0.00 42.22 5.01
3537 5930 4.901849 ACAAGAATATGCTAGTGGCTAGGA 59.098 41.667 0.00 2.92 38.66 2.94
3642 6035 0.179009 TGGCTCTGCATATTGGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
3648 6041 1.008079 GCATATTGGGCTCGCTTGC 60.008 57.895 0.00 0.00 0.00 4.01
3700 6096 1.769026 TTGGCTTGTGTGCACCTTTA 58.231 45.000 15.69 0.00 34.04 1.85
3711 6107 2.034878 TGCACCTTTATTGTTGGCACA 58.965 42.857 0.00 0.00 0.00 4.57
3724 6120 0.396060 TGGCACATTTGGAAAAGGCC 59.604 50.000 0.00 0.00 40.29 5.19
3731 6128 0.461961 TTTGGAAAAGGCCCAACGTG 59.538 50.000 0.00 0.00 42.80 4.49
3752 6151 0.832135 TCGTCTTCAGAAGGGCCACT 60.832 55.000 6.18 1.06 0.00 4.00
3763 6162 2.936032 GGCCACTCCCTCCCTTGT 60.936 66.667 0.00 0.00 0.00 3.16
3769 6168 1.561542 CACTCCCTCCCTTGTTGCTAT 59.438 52.381 0.00 0.00 0.00 2.97
3817 6216 1.070786 ACTCATGCGGACGGTTTGT 59.929 52.632 0.00 0.00 0.00 2.83
3879 6279 2.616893 CCCCCATCCCAACCCTGA 60.617 66.667 0.00 0.00 0.00 3.86
3883 6283 1.207488 CCCATCCCAACCCTGAGACA 61.207 60.000 0.00 0.00 0.00 3.41
3888 6288 2.696775 TCCCAACCCTGAGACAGTTTA 58.303 47.619 0.00 0.00 0.00 2.01
3889 6289 3.256704 TCCCAACCCTGAGACAGTTTAT 58.743 45.455 0.00 0.00 0.00 1.40
3906 6306 4.053295 GTTTATCCGGAAAGCGCATACTA 58.947 43.478 9.01 0.00 0.00 1.82
3925 6326 0.527565 AGCATTGATCGCCAACAACC 59.472 50.000 0.00 0.00 37.63 3.77
3928 6329 1.312371 ATTGATCGCCAACAACCGGG 61.312 55.000 6.32 0.00 37.63 5.73
3929 6330 3.810896 GATCGCCAACAACCGGGC 61.811 66.667 6.32 0.00 46.80 6.13
3944 6345 1.134965 CCGGGCTATATCTGCAGTAGC 60.135 57.143 20.95 20.95 39.98 3.58
3972 6373 2.040545 TCTCAAGTAATCCGGGCCAAAA 59.959 45.455 4.39 0.00 0.00 2.44
3974 6375 3.436243 TCAAGTAATCCGGGCCAAAAAT 58.564 40.909 4.39 0.00 0.00 1.82
3975 6376 4.601084 TCAAGTAATCCGGGCCAAAAATA 58.399 39.130 4.39 0.00 0.00 1.40
3976 6377 4.399934 TCAAGTAATCCGGGCCAAAAATAC 59.600 41.667 4.39 1.87 0.00 1.89
3978 6379 3.951680 AGTAATCCGGGCCAAAAATACTG 59.048 43.478 4.39 0.00 0.00 2.74
3979 6380 1.111277 ATCCGGGCCAAAAATACTGC 58.889 50.000 4.39 0.00 0.00 4.40
3980 6381 0.039035 TCCGGGCCAAAAATACTGCT 59.961 50.000 4.39 0.00 0.00 4.24
3981 6382 1.282447 TCCGGGCCAAAAATACTGCTA 59.718 47.619 4.39 0.00 0.00 3.49
3982 6383 1.404035 CCGGGCCAAAAATACTGCTAC 59.596 52.381 4.39 0.00 0.00 3.58
3985 6386 2.165641 GGGCCAAAAATACTGCTACCAC 59.834 50.000 4.39 0.00 0.00 4.16
3994 6395 0.401738 ACTGCTACCACACCTTGCAT 59.598 50.000 0.00 0.00 33.02 3.96
3998 6399 3.016031 TGCTACCACACCTTGCATAATG 58.984 45.455 0.00 0.00 0.00 1.90
4036 6437 0.817654 ACATGGACTCGCTCATTCGA 59.182 50.000 0.00 0.00 36.94 3.71
4116 6517 6.289834 CAGTGCATTTCTGATAAGAGGAGAT 58.710 40.000 0.00 0.00 35.20 2.75
4133 6535 0.106719 GATGCCAATCTTTCCCGGGA 60.107 55.000 22.63 22.63 0.00 5.14
4163 6565 4.926860 TGCACTCGAAATAGTTGTCATG 57.073 40.909 0.00 0.00 0.00 3.07
4206 6608 2.224185 ACGGTTGAACACATGTCTAGCA 60.224 45.455 0.00 0.00 0.00 3.49
4214 6616 2.159043 ACACATGTCTAGCAATCCGGAG 60.159 50.000 11.34 0.00 0.00 4.63
4253 6655 0.250295 TGTTTGAAGAGCGGGTCAGG 60.250 55.000 10.15 0.00 0.00 3.86
4259 6661 3.003763 GAGCGGGTCAGGGGACTT 61.004 66.667 1.64 0.00 43.77 3.01
4298 6705 4.874528 GCAATGGCCTCTCTCTCC 57.125 61.111 3.32 0.00 0.00 3.71
4309 6716 1.818060 CTCTCTCTCCCTCTGTGTGTG 59.182 57.143 0.00 0.00 0.00 3.82
4310 6717 1.145945 TCTCTCTCCCTCTGTGTGTGT 59.854 52.381 0.00 0.00 0.00 3.72
4311 6718 1.967066 CTCTCTCCCTCTGTGTGTGTT 59.033 52.381 0.00 0.00 0.00 3.32
4312 6719 1.688735 TCTCTCCCTCTGTGTGTGTTG 59.311 52.381 0.00 0.00 0.00 3.33
4313 6720 0.106708 TCTCCCTCTGTGTGTGTTGC 59.893 55.000 0.00 0.00 0.00 4.17
4314 6721 0.179048 CTCCCTCTGTGTGTGTTGCA 60.179 55.000 0.00 0.00 0.00 4.08
4315 6722 0.254462 TCCCTCTGTGTGTGTTGCAA 59.746 50.000 0.00 0.00 0.00 4.08
4316 6723 1.133823 TCCCTCTGTGTGTGTTGCAAT 60.134 47.619 0.59 0.00 0.00 3.56
4317 6724 1.682854 CCCTCTGTGTGTGTTGCAATT 59.317 47.619 0.59 0.00 0.00 2.32
4318 6725 2.287788 CCCTCTGTGTGTGTTGCAATTC 60.288 50.000 0.59 0.00 0.00 2.17
4319 6726 2.358582 CCTCTGTGTGTGTTGCAATTCA 59.641 45.455 0.59 2.14 0.00 2.57
4320 6727 3.181488 CCTCTGTGTGTGTTGCAATTCAA 60.181 43.478 0.59 0.00 0.00 2.69
4329 6736 2.270352 TTGCAATTCAACCTCGGAGT 57.730 45.000 4.02 0.00 0.00 3.85
4330 6737 3.410631 TTGCAATTCAACCTCGGAGTA 57.589 42.857 4.02 0.00 0.00 2.59
4331 6738 3.627395 TGCAATTCAACCTCGGAGTAT 57.373 42.857 4.02 0.00 0.00 2.12
4332 6739 3.270027 TGCAATTCAACCTCGGAGTATG 58.730 45.455 4.02 2.83 0.00 2.39
4333 6740 2.032178 GCAATTCAACCTCGGAGTATGC 59.968 50.000 4.02 0.63 0.00 3.14
4334 6741 2.614057 CAATTCAACCTCGGAGTATGCC 59.386 50.000 4.02 0.00 0.00 4.40
4335 6742 1.568504 TTCAACCTCGGAGTATGCCT 58.431 50.000 4.02 0.00 0.00 4.75
4336 6743 1.112113 TCAACCTCGGAGTATGCCTC 58.888 55.000 4.02 0.00 39.67 4.70
4337 6744 0.249073 CAACCTCGGAGTATGCCTCG 60.249 60.000 4.02 0.00 41.46 4.63
4338 6745 1.392710 AACCTCGGAGTATGCCTCGG 61.393 60.000 4.02 0.00 41.46 4.63
4339 6746 2.565645 CCTCGGAGTATGCCTCGGG 61.566 68.421 4.02 0.00 41.46 5.14
4340 6747 1.528542 CTCGGAGTATGCCTCGGGA 60.529 63.158 0.00 0.00 41.46 5.14
4341 6748 0.896019 CTCGGAGTATGCCTCGGGAT 60.896 60.000 0.00 0.00 41.46 3.85
4342 6749 0.894184 TCGGAGTATGCCTCGGGATC 60.894 60.000 0.00 0.00 41.46 3.36
4343 6750 1.587054 GGAGTATGCCTCGGGATCG 59.413 63.158 0.00 0.00 41.46 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.451150 TCGGAGGCATGCACGACC 62.451 66.667 21.36 14.71 0.00 4.79
38 39 3.188786 GTCGGAGGCATGCACGAC 61.189 66.667 31.26 31.26 46.89 4.34
39 40 4.451150 GGTCGGAGGCATGCACGA 62.451 66.667 21.36 21.72 0.00 4.35
41 46 1.227380 CTAGGTCGGAGGCATGCAC 60.227 63.158 21.36 12.64 0.00 4.57
47 52 4.228567 GCCAGCTAGGTCGGAGGC 62.229 72.222 12.72 9.37 40.61 4.70
81 86 0.098376 GAGAAGAAATGCCGCAGCTG 59.902 55.000 10.11 10.11 40.80 4.24
291 320 2.685380 AGGCTGCGTAGGAAGGCT 60.685 61.111 13.53 13.53 43.87 4.58
292 321 2.202946 GAGGCTGCGTAGGAAGGC 60.203 66.667 8.91 8.91 39.18 4.35
293 322 0.755698 TAGGAGGCTGCGTAGGAAGG 60.756 60.000 1.76 0.00 0.00 3.46
294 323 0.671251 CTAGGAGGCTGCGTAGGAAG 59.329 60.000 1.76 0.00 0.00 3.46
295 324 1.392710 GCTAGGAGGCTGCGTAGGAA 61.393 60.000 1.76 0.00 0.00 3.36
374 414 0.798776 CGAGTGTTGGATGGAACTGC 59.201 55.000 0.00 0.00 0.00 4.40
405 448 1.973281 CTTGTCCTTGCGCCATGGT 60.973 57.895 14.67 0.00 31.64 3.55
613 656 1.278699 AGTCGGAGAACTCGTAGTCCT 59.721 52.381 0.00 0.00 39.69 3.85
650 693 2.280552 CGGGAAGGAAGGGTCGTCA 61.281 63.158 0.00 0.00 0.00 4.35
758 801 1.143183 GCCGCCGAGGAACTTGATA 59.857 57.895 0.91 0.00 44.22 2.15
932 990 8.217115 CGTGAGATCGATTGAATACAAATTAGG 58.783 37.037 0.00 0.00 39.54 2.69
1116 1199 1.996798 TCAGTTCAACGGTCTCCTCT 58.003 50.000 0.00 0.00 0.00 3.69
1395 1523 8.810652 TTATCAGTATCCTGTTTTTGTTTTGC 57.189 30.769 0.00 0.00 39.82 3.68
1452 1582 6.545567 TGGTATGCATTATTCAGACATCCAT 58.454 36.000 3.54 0.00 0.00 3.41
1483 1873 1.466856 ATCGCAAAGGCACATGTCAT 58.533 45.000 0.00 0.00 41.24 3.06
1497 2161 1.218047 CCGACTCTCCCAAATCGCA 59.782 57.895 0.00 0.00 33.25 5.10
1528 2192 4.876107 GTCAAGACAAGAGTGACCTTTTCA 59.124 41.667 0.00 0.00 36.48 2.69
1588 2519 4.721132 AGGATAGCTACACTGTCTAGTCC 58.279 47.826 0.00 0.00 36.77 3.85
1784 3389 1.975660 TTGGAAGGTTCGGTTGGAAG 58.024 50.000 0.00 0.00 34.69 3.46
1840 3471 2.232696 TGCTGAAATGCGTACTCCAGTA 59.767 45.455 0.00 0.00 35.36 2.74
1850 3481 0.592637 TGTGGAACTGCTGAAATGCG 59.407 50.000 0.00 0.00 38.04 4.73
1867 3498 7.829211 ACCAGCACTGATTATACTATGTTTTGT 59.171 33.333 0.00 0.00 0.00 2.83
1899 3531 7.305813 GGTAAACCCCTTTCCATAAGAAAAA 57.694 36.000 0.00 0.00 43.84 1.94
1900 3532 6.921486 GGTAAACCCCTTTCCATAAGAAAA 57.079 37.500 0.00 0.00 43.84 2.29
1955 3614 3.559171 GGGTGTGTTTTGATGGAGCTCTA 60.559 47.826 14.64 8.26 0.00 2.43
1957 3616 1.541588 GGGTGTGTTTTGATGGAGCTC 59.458 52.381 4.71 4.71 0.00 4.09
1958 3617 1.133513 TGGGTGTGTTTTGATGGAGCT 60.134 47.619 0.00 0.00 0.00 4.09
1959 3618 1.327303 TGGGTGTGTTTTGATGGAGC 58.673 50.000 0.00 0.00 0.00 4.70
1960 3619 4.309099 CAAATGGGTGTGTTTTGATGGAG 58.691 43.478 0.00 0.00 33.24 3.86
1961 3620 3.494048 GCAAATGGGTGTGTTTTGATGGA 60.494 43.478 0.00 0.00 33.24 3.41
1963 3622 3.464907 TGCAAATGGGTGTGTTTTGATG 58.535 40.909 0.00 0.00 33.24 3.07
1964 3623 3.387374 TCTGCAAATGGGTGTGTTTTGAT 59.613 39.130 0.00 0.00 33.24 2.57
1965 3624 2.762887 TCTGCAAATGGGTGTGTTTTGA 59.237 40.909 0.00 0.00 33.24 2.69
1972 3631 0.610232 GGAGCTCTGCAAATGGGTGT 60.610 55.000 14.64 0.00 0.00 4.16
1975 3634 1.030457 GATGGAGCTCTGCAAATGGG 58.970 55.000 14.64 0.00 33.77 4.00
1976 3635 1.030457 GGATGGAGCTCTGCAAATGG 58.970 55.000 14.64 0.00 33.77 3.16
1990 3649 0.613260 TGTCAGTTTCTCCCGGATGG 59.387 55.000 0.73 0.00 0.00 3.51
1991 3650 1.726853 GTGTCAGTTTCTCCCGGATG 58.273 55.000 0.73 0.00 0.00 3.51
1993 3652 1.663739 CGTGTCAGTTTCTCCCGGA 59.336 57.895 0.73 0.00 0.00 5.14
1994 3653 2.027625 GCGTGTCAGTTTCTCCCGG 61.028 63.158 0.00 0.00 0.00 5.73
1995 3654 2.027625 GGCGTGTCAGTTTCTCCCG 61.028 63.158 0.00 0.00 0.00 5.14
1996 3655 1.671379 GGGCGTGTCAGTTTCTCCC 60.671 63.158 0.00 0.00 0.00 4.30
2036 3695 1.903183 GTCCAGCTTGGGTTCTAGAGT 59.097 52.381 0.00 0.00 38.32 3.24
2056 3715 8.294954 TCCTACTACTAATTTCAGGTCTTCAG 57.705 38.462 0.00 0.00 0.00 3.02
2058 3717 7.684913 GCCTCCTACTACTAATTTCAGGTCTTC 60.685 44.444 0.00 0.00 0.00 2.87
2083 4052 3.828875 AGTATTCCAGTTGCTCCTAGC 57.171 47.619 0.00 0.00 42.82 3.42
2084 4053 5.344743 TCAAGTATTCCAGTTGCTCCTAG 57.655 43.478 0.00 0.00 37.47 3.02
2085 4054 5.674525 CATCAAGTATTCCAGTTGCTCCTA 58.325 41.667 0.00 0.00 37.47 2.94
2086 4055 4.521146 CATCAAGTATTCCAGTTGCTCCT 58.479 43.478 0.00 0.00 37.47 3.69
2087 4056 3.065925 GCATCAAGTATTCCAGTTGCTCC 59.934 47.826 0.00 0.00 37.47 4.70
2088 4057 3.242543 CGCATCAAGTATTCCAGTTGCTC 60.243 47.826 0.00 0.00 37.47 4.26
2089 4058 2.679837 CGCATCAAGTATTCCAGTTGCT 59.320 45.455 0.00 0.00 37.47 3.91
2090 4059 2.420022 ACGCATCAAGTATTCCAGTTGC 59.580 45.455 0.00 0.00 37.47 4.17
2091 4060 3.242091 CGACGCATCAAGTATTCCAGTTG 60.242 47.826 0.00 0.00 38.70 3.16
2092 4061 2.930040 CGACGCATCAAGTATTCCAGTT 59.070 45.455 0.00 0.00 0.00 3.16
2093 4062 2.094182 ACGACGCATCAAGTATTCCAGT 60.094 45.455 0.00 0.00 0.00 4.00
2094 4063 2.282555 CACGACGCATCAAGTATTCCAG 59.717 50.000 0.00 0.00 0.00 3.86
2095 4064 2.094442 TCACGACGCATCAAGTATTCCA 60.094 45.455 0.00 0.00 0.00 3.53
2096 4065 2.536365 TCACGACGCATCAAGTATTCC 58.464 47.619 0.00 0.00 0.00 3.01
2097 4066 4.318121 GGAATCACGACGCATCAAGTATTC 60.318 45.833 0.00 0.00 0.00 1.75
2098 4067 3.555956 GGAATCACGACGCATCAAGTATT 59.444 43.478 0.00 0.00 0.00 1.89
2099 4068 3.123804 GGAATCACGACGCATCAAGTAT 58.876 45.455 0.00 0.00 0.00 2.12
2100 4069 2.536365 GGAATCACGACGCATCAAGTA 58.464 47.619 0.00 0.00 0.00 2.24
2104 4073 1.075979 CACGGAATCACGACGCATCA 61.076 55.000 0.00 0.00 37.61 3.07
2125 4095 7.755373 CACATCTCGATCTAGTTCTTGTTTACA 59.245 37.037 0.00 0.00 0.00 2.41
2127 4097 7.827701 ACACATCTCGATCTAGTTCTTGTTTA 58.172 34.615 0.00 0.00 0.00 2.01
2162 4133 1.662309 CCGACCGGTTAATCGATCGAG 60.662 57.143 26.08 12.21 40.86 4.04
2182 4153 2.095692 CCTGCAAACAAACAAGCAAACC 59.904 45.455 0.00 0.00 36.44 3.27
2342 4314 0.863956 AGAGGAGGGATCGGAGGAAT 59.136 55.000 0.00 0.00 0.00 3.01
2346 4318 2.206536 GGCAGAGGAGGGATCGGAG 61.207 68.421 0.00 0.00 0.00 4.63
2406 4378 8.347771 ACGCTTCTATGTATTTTCTGTATACGA 58.652 33.333 0.00 0.00 32.38 3.43
2447 4465 2.152830 GAGTCCCGATGTAGTATCGCT 58.847 52.381 3.92 0.00 39.95 4.93
2505 4582 5.613329 TGCTGTCAGATTGTGATATGCATA 58.387 37.500 9.27 9.27 37.56 3.14
2688 4771 1.448540 CGCCATGTCGAAGAAGCCT 60.449 57.895 0.00 0.00 39.69 4.58
2742 4825 3.672295 CTCGGAGAAGCACCAGCCC 62.672 68.421 0.00 0.00 43.56 5.19
2769 4852 2.338984 GTGCCGTTGTCGAGGACT 59.661 61.111 0.00 0.00 39.71 3.85
2779 4862 2.113139 CTCCACCTTGGTGCCGTT 59.887 61.111 13.93 0.00 39.03 4.44
2820 4903 1.228552 GTCCTTGCCCTCAAAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
2846 4929 2.032681 GCTTTGGCAGGACCTCGT 59.967 61.111 0.00 0.00 40.22 4.18
2928 5012 3.546815 CGCTTGGAGCAAAAGATAATCGG 60.547 47.826 0.50 0.00 42.58 4.18
2950 5034 6.021390 CGTCGATCGATTCATATATGTTGGAC 60.021 42.308 22.50 1.29 42.86 4.02
3134 5228 1.097547 CCCATCATGGCCTTCACGTC 61.098 60.000 3.32 0.00 35.79 4.34
3229 5323 2.795973 CCGTCGCTGTCGTGGATA 59.204 61.111 0.00 0.00 35.43 2.59
3289 5383 1.358725 CGAAAAGCTCGGCGATCCAA 61.359 55.000 11.27 0.00 44.20 3.53
3310 5404 7.181305 TCCTTGTAGTCCTTGTTATTGTATGGA 59.819 37.037 0.00 0.00 0.00 3.41
3370 5464 8.737168 AGTAAATGTAGTGTACGTAGGATGTA 57.263 34.615 0.00 0.00 0.00 2.29
3384 5488 5.204409 TGTTGTGGTCGAGTAAATGTAGT 57.796 39.130 0.00 0.00 0.00 2.73
3486 5877 7.768582 CGTGATGGATATTATTAGCCACCAATA 59.231 37.037 3.84 0.00 46.22 1.90
3510 5901 3.871594 GCCACTAGCATATTCTTGTTCGT 59.128 43.478 0.00 0.00 42.97 3.85
3532 5925 1.097547 CCCGCAATGGCAAGTCCTAG 61.098 60.000 0.00 0.00 41.24 3.02
3556 5949 3.665323 GCAACACATAGAAACGCTCACAG 60.665 47.826 0.00 0.00 0.00 3.66
3596 5989 2.084546 CACCAAAACTAGCCAGCCTAC 58.915 52.381 0.00 0.00 0.00 3.18
3642 6035 7.460120 CGAGTCAAAACAAATAATAAGCAAGCG 60.460 37.037 0.00 0.00 0.00 4.68
3676 6072 1.473080 GGTGCACACAAGCCAATGTTT 60.473 47.619 20.43 0.00 0.00 2.83
3700 6096 4.136051 CCTTTTCCAAATGTGCCAACAAT 58.864 39.130 0.00 0.00 40.46 2.71
3711 6107 1.069978 CACGTTGGGCCTTTTCCAAAT 59.930 47.619 4.53 0.00 44.76 2.32
3731 6128 1.079057 GGCCCTTCTGAAGACGACC 60.079 63.158 18.68 9.93 0.00 4.79
3752 6151 1.213296 GGATAGCAACAAGGGAGGGA 58.787 55.000 0.00 0.00 0.00 4.20
3763 6162 0.107017 GCAGGCCTTGAGGATAGCAA 60.107 55.000 0.00 0.00 37.39 3.91
3769 6168 1.916273 TTACGGCAGGCCTTGAGGA 60.916 57.895 0.00 0.00 37.39 3.71
3799 6198 0.949105 GACAAACCGTCCGCATGAGT 60.949 55.000 0.00 0.00 38.85 3.41
3803 6202 1.305219 CCATGACAAACCGTCCGCAT 61.305 55.000 0.00 0.00 44.71 4.73
3817 6216 2.106938 GATCGCGGTGCTCCATGA 59.893 61.111 6.13 2.05 0.00 3.07
3878 6278 2.603560 CGCTTTCCGGATAAACTGTCTC 59.396 50.000 4.15 0.00 0.00 3.36
3879 6279 2.618053 CGCTTTCCGGATAAACTGTCT 58.382 47.619 4.15 0.00 0.00 3.41
3883 6283 2.038387 ATGCGCTTTCCGGATAAACT 57.962 45.000 4.15 0.00 46.59 2.66
3889 6289 0.249322 GCTAGTATGCGCTTTCCGGA 60.249 55.000 9.73 0.00 42.95 5.14
3906 6306 0.527565 GGTTGTTGGCGATCAATGCT 59.472 50.000 0.00 0.00 37.73 3.79
3925 6326 1.821753 AGCTACTGCAGATATAGCCCG 59.178 52.381 23.35 0.00 41.91 6.13
3928 6329 2.233431 AGCCAGCTACTGCAGATATAGC 59.767 50.000 23.35 22.12 42.74 2.97
3929 6330 3.763360 AGAGCCAGCTACTGCAGATATAG 59.237 47.826 23.35 13.01 42.74 1.31
3930 6331 3.761218 GAGAGCCAGCTACTGCAGATATA 59.239 47.826 23.35 0.91 42.74 0.86
3931 6332 2.562298 GAGAGCCAGCTACTGCAGATAT 59.438 50.000 23.35 0.00 42.74 1.63
3944 6345 2.223923 CCGGATTACTTGAGAGAGCCAG 60.224 54.545 0.00 0.00 0.00 4.85
3972 6373 2.039746 TGCAAGGTGTGGTAGCAGTATT 59.960 45.455 0.00 0.00 0.00 1.89
3974 6375 1.052617 TGCAAGGTGTGGTAGCAGTA 58.947 50.000 0.00 0.00 0.00 2.74
3975 6376 0.401738 ATGCAAGGTGTGGTAGCAGT 59.598 50.000 0.00 0.00 38.75 4.40
3976 6377 2.401583 TATGCAAGGTGTGGTAGCAG 57.598 50.000 0.00 0.00 38.75 4.24
3978 6379 3.016736 ACATTATGCAAGGTGTGGTAGC 58.983 45.455 0.00 0.00 0.00 3.58
3979 6380 4.621068 CACATTATGCAAGGTGTGGTAG 57.379 45.455 16.48 0.00 40.65 3.18
3994 6395 4.959839 TGCCTAGACTCCATGTACACATTA 59.040 41.667 0.00 0.00 33.61 1.90
3998 6399 2.496070 TGTGCCTAGACTCCATGTACAC 59.504 50.000 0.00 0.00 0.00 2.90
4116 6517 0.334676 ATTCCCGGGAAAGATTGGCA 59.665 50.000 38.52 14.53 37.69 4.92
4133 6535 2.859165 TTTCGAGTGCAAGGAGGATT 57.141 45.000 0.00 0.00 0.00 3.01
4214 6616 1.153429 AACCTATTCTGACGCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
4221 6623 5.470098 GCTCTTCAAACACAACCTATTCTGA 59.530 40.000 0.00 0.00 0.00 3.27
4259 6661 4.783055 CCTACTCTAGCAGGACTACTTCA 58.217 47.826 0.00 0.00 33.42 3.02
4298 6705 2.358582 TGAATTGCAACACACACAGAGG 59.641 45.455 0.00 0.00 0.00 3.69
4310 6717 2.270352 ACTCCGAGGTTGAATTGCAA 57.730 45.000 0.00 0.00 0.00 4.08
4311 6718 3.270027 CATACTCCGAGGTTGAATTGCA 58.730 45.455 0.00 0.00 0.00 4.08
4312 6719 2.032178 GCATACTCCGAGGTTGAATTGC 59.968 50.000 0.00 0.00 0.00 3.56
4313 6720 2.614057 GGCATACTCCGAGGTTGAATTG 59.386 50.000 0.00 0.00 0.00 2.32
4314 6721 2.505819 AGGCATACTCCGAGGTTGAATT 59.494 45.455 0.00 0.00 0.00 2.17
4315 6722 2.103263 GAGGCATACTCCGAGGTTGAAT 59.897 50.000 0.00 0.00 40.49 2.57
4316 6723 1.480954 GAGGCATACTCCGAGGTTGAA 59.519 52.381 0.00 0.00 40.49 2.69
4317 6724 1.112113 GAGGCATACTCCGAGGTTGA 58.888 55.000 0.00 0.00 40.49 3.18
4318 6725 0.249073 CGAGGCATACTCCGAGGTTG 60.249 60.000 0.00 0.00 43.57 3.77
4319 6726 1.392710 CCGAGGCATACTCCGAGGTT 61.393 60.000 0.00 0.00 43.57 3.50
4320 6727 1.828660 CCGAGGCATACTCCGAGGT 60.829 63.158 0.00 0.00 43.57 3.85
4321 6728 2.565645 CCCGAGGCATACTCCGAGG 61.566 68.421 0.00 0.00 43.57 4.63
4322 6729 0.896019 ATCCCGAGGCATACTCCGAG 60.896 60.000 0.00 0.00 43.57 4.63
4323 6730 0.894184 GATCCCGAGGCATACTCCGA 60.894 60.000 0.00 0.00 43.57 4.55
4324 6731 1.587054 GATCCCGAGGCATACTCCG 59.413 63.158 0.00 0.00 43.57 4.63
4325 6732 1.587054 CGATCCCGAGGCATACTCC 59.413 63.158 0.00 0.00 43.57 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.