Multiple sequence alignment - TraesCS4B01G297800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G297800 chr4B 100.000 8176 0 0 1 8176 583082461 583074286 0.000000e+00 15099
1 TraesCS4B01G297800 chr4B 98.768 5278 57 2 1454 6729 72894179 72899450 0.000000e+00 9380
2 TraesCS4B01G297800 chr4B 83.257 436 67 6 998 1430 168565753 168566185 5.950000e-106 396
3 TraesCS4B01G297800 chr1A 98.731 5281 60 4 1454 6729 490790797 490785519 0.000000e+00 9374
4 TraesCS4B01G297800 chr1A 98.694 5285 54 6 1453 6729 548582109 548576832 0.000000e+00 9363
5 TraesCS4B01G297800 chr1A 90.435 115 11 0 7464 7578 385655222 385655108 1.420000e-32 152
6 TraesCS4B01G297800 chr1B 98.601 5289 64 3 1449 6733 510833921 510839203 0.000000e+00 9348
7 TraesCS4B01G297800 chr1B 98.636 5279 65 3 1454 6729 487930218 487924944 0.000000e+00 9343
8 TraesCS4B01G297800 chr1B 98.580 5282 63 4 1454 6730 419943171 419948445 0.000000e+00 9328
9 TraesCS4B01G297800 chr1B 95.069 649 31 1 1 648 629632647 629633295 0.000000e+00 1020
10 TraesCS4B01G297800 chr4A 98.618 5284 62 5 1454 6729 384814593 384819873 0.000000e+00 9343
11 TraesCS4B01G297800 chr4A 98.618 5283 63 4 1454 6730 731658550 731653272 0.000000e+00 9343
12 TraesCS4B01G297800 chr4A 92.618 718 32 8 736 1448 4636617 4637318 0.000000e+00 1013
13 TraesCS4B01G297800 chr4A 94.073 658 35 3 1 654 708737849 708737192 0.000000e+00 996
14 TraesCS4B01G297800 chr4A 94.299 649 35 2 1 648 665673735 665673088 0.000000e+00 992
15 TraesCS4B01G297800 chr4A 96.162 495 15 1 6782 7276 4637364 4637854 0.000000e+00 806
16 TraesCS4B01G297800 chr4A 79.967 599 87 23 7585 8159 16409243 16408654 2.120000e-110 411
17 TraesCS4B01G297800 chr4A 83.673 441 66 6 998 1435 468207781 468208218 2.120000e-110 411
18 TraesCS4B01G297800 chr4A 82.201 427 61 14 7743 8159 57108413 57108834 3.630000e-93 353
19 TraesCS4B01G297800 chr4A 91.150 113 10 0 7464 7576 17248025 17247913 3.950000e-33 154
20 TraesCS4B01G297800 chr7A 98.579 5278 66 3 1454 6729 46189726 46184456 0.000000e+00 9323
21 TraesCS4B01G297800 chr6B 94.495 654 32 2 1 650 676751462 676752115 0.000000e+00 1005
22 TraesCS4B01G297800 chr5B 94.624 651 32 2 1 650 508336607 508337255 0.000000e+00 1005
23 TraesCS4B01G297800 chr5B 94.055 656 37 2 1 654 684906180 684905525 0.000000e+00 994
24 TraesCS4B01G297800 chr5B 83.182 440 70 4 998 1435 114425511 114425948 4.600000e-107 399
25 TraesCS4B01G297800 chr4D 93.899 672 26 6 6730 7392 465954101 465953436 0.000000e+00 1000
26 TraesCS4B01G297800 chr4D 94.473 579 25 2 882 1453 465954675 465954097 0.000000e+00 885
27 TraesCS4B01G297800 chr4D 83.221 447 69 6 998 1441 108053004 108052561 9.880000e-109 405
28 TraesCS4B01G297800 chr4D 89.076 238 18 4 7159 7389 465956671 465956435 1.040000e-73 289
29 TraesCS4B01G297800 chr3B 94.207 656 35 3 1 653 24800846 24800191 0.000000e+00 998
30 TraesCS4B01G297800 chr7B 94.325 652 34 2 1 649 616289647 616288996 0.000000e+00 996
31 TraesCS4B01G297800 chr7B 94.436 647 35 1 3 648 614389830 614390476 0.000000e+00 994
32 TraesCS4B01G297800 chr2B 88.521 453 45 5 7730 8175 790792325 790792777 7.220000e-150 542
33 TraesCS4B01G297800 chr2B 82.174 460 64 15 7709 8157 772722339 772721887 5.990000e-101 379
34 TraesCS4B01G297800 chr5A 87.952 415 32 6 1033 1430 483702179 483701766 2.670000e-129 473
35 TraesCS4B01G297800 chr5A 82.287 446 75 4 998 1441 108281386 108280943 4.630000e-102 383
36 TraesCS4B01G297800 chr5A 92.174 115 9 0 7464 7578 357567341 357567227 6.570000e-36 163
37 TraesCS4B01G297800 chr5A 91.818 110 9 0 7464 7573 609820690 609820799 3.950000e-33 154
38 TraesCS4B01G297800 chr5A 93.617 94 2 2 6849 6938 483701766 483701673 3.980000e-28 137
39 TraesCS4B01G297800 chr5D 82.955 440 71 4 998 1435 104625602 104626039 2.140000e-105 394
40 TraesCS4B01G297800 chr7D 82.805 442 53 19 7732 8158 280600044 280599611 2.790000e-99 374
41 TraesCS4B01G297800 chr2A 92.727 110 8 0 7464 7573 515291574 515291683 8.490000e-35 159
42 TraesCS4B01G297800 chr6A 91.304 115 10 0 7464 7578 488058011 488057897 3.050000e-34 158
43 TraesCS4B01G297800 chr6A 91.818 110 9 0 7464 7573 208378355 208378464 3.950000e-33 154
44 TraesCS4B01G297800 chr3A 91.150 113 10 0 7464 7576 697523299 697523187 3.950000e-33 154
45 TraesCS4B01G297800 chr1D 90.351 114 11 0 7465 7578 334450183 334450296 5.110000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G297800 chr4B 583074286 583082461 8175 True 15099.000000 15099 100.000000 1 8176 1 chr4B.!!$R1 8175
1 TraesCS4B01G297800 chr4B 72894179 72899450 5271 False 9380.000000 9380 98.768000 1454 6729 1 chr4B.!!$F1 5275
2 TraesCS4B01G297800 chr1A 490785519 490790797 5278 True 9374.000000 9374 98.731000 1454 6729 1 chr1A.!!$R2 5275
3 TraesCS4B01G297800 chr1A 548576832 548582109 5277 True 9363.000000 9363 98.694000 1453 6729 1 chr1A.!!$R3 5276
4 TraesCS4B01G297800 chr1B 510833921 510839203 5282 False 9348.000000 9348 98.601000 1449 6733 1 chr1B.!!$F2 5284
5 TraesCS4B01G297800 chr1B 487924944 487930218 5274 True 9343.000000 9343 98.636000 1454 6729 1 chr1B.!!$R1 5275
6 TraesCS4B01G297800 chr1B 419943171 419948445 5274 False 9328.000000 9328 98.580000 1454 6730 1 chr1B.!!$F1 5276
7 TraesCS4B01G297800 chr1B 629632647 629633295 648 False 1020.000000 1020 95.069000 1 648 1 chr1B.!!$F3 647
8 TraesCS4B01G297800 chr4A 384814593 384819873 5280 False 9343.000000 9343 98.618000 1454 6729 1 chr4A.!!$F2 5275
9 TraesCS4B01G297800 chr4A 731653272 731658550 5278 True 9343.000000 9343 98.618000 1454 6730 1 chr4A.!!$R5 5276
10 TraesCS4B01G297800 chr4A 708737192 708737849 657 True 996.000000 996 94.073000 1 654 1 chr4A.!!$R4 653
11 TraesCS4B01G297800 chr4A 665673088 665673735 647 True 992.000000 992 94.299000 1 648 1 chr4A.!!$R3 647
12 TraesCS4B01G297800 chr4A 4636617 4637854 1237 False 909.500000 1013 94.390000 736 7276 2 chr4A.!!$F4 6540
13 TraesCS4B01G297800 chr4A 16408654 16409243 589 True 411.000000 411 79.967000 7585 8159 1 chr4A.!!$R1 574
14 TraesCS4B01G297800 chr7A 46184456 46189726 5270 True 9323.000000 9323 98.579000 1454 6729 1 chr7A.!!$R1 5275
15 TraesCS4B01G297800 chr6B 676751462 676752115 653 False 1005.000000 1005 94.495000 1 650 1 chr6B.!!$F1 649
16 TraesCS4B01G297800 chr5B 508336607 508337255 648 False 1005.000000 1005 94.624000 1 650 1 chr5B.!!$F2 649
17 TraesCS4B01G297800 chr5B 684905525 684906180 655 True 994.000000 994 94.055000 1 654 1 chr5B.!!$R1 653
18 TraesCS4B01G297800 chr4D 465953436 465956671 3235 True 724.666667 1000 92.482667 882 7392 3 chr4D.!!$R2 6510
19 TraesCS4B01G297800 chr3B 24800191 24800846 655 True 998.000000 998 94.207000 1 653 1 chr3B.!!$R1 652
20 TraesCS4B01G297800 chr7B 616288996 616289647 651 True 996.000000 996 94.325000 1 649 1 chr7B.!!$R1 648
21 TraesCS4B01G297800 chr7B 614389830 614390476 646 False 994.000000 994 94.436000 3 648 1 chr7B.!!$F1 645
22 TraesCS4B01G297800 chr5A 483701673 483702179 506 True 305.000000 473 90.784500 1033 6938 2 chr5A.!!$R3 5905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 487 0.107897 CATTGGTCCCGATTCGTCCA 60.108 55.000 5.20 7.86 0.00 4.02 F
672 682 0.178858 TGGGTTGGTGTCCCCATAGA 60.179 55.000 0.00 0.00 46.06 1.98 F
794 805 0.179150 AGATCGAACACGAGCAGCTC 60.179 55.000 12.94 12.94 43.46 4.09 F
924 2041 0.810031 CCTATATATGCACGCGGCCC 60.810 60.000 12.47 0.00 43.89 5.80 F
2271 3435 0.842030 TGTCTGGACAGGGCAGGATT 60.842 55.000 0.00 0.00 36.21 3.01 F
2913 4082 1.904771 TCTCGGCAATGACGGGAAT 59.095 52.632 9.38 0.00 42.29 3.01 F
3956 5125 1.811965 CCATGCATCTGTTCCGTTTCA 59.188 47.619 0.00 0.00 0.00 2.69 F
5063 6232 1.145598 CATCCTCTGAGCCACGCAT 59.854 57.895 0.00 0.00 0.00 4.73 F
6039 7208 0.673644 CCCGTGACACTCATTGGTCC 60.674 60.000 3.68 0.00 33.09 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 2573 0.258774 AGAAACTTGCCTGGTGGTGT 59.741 50.000 0.00 0.00 35.27 4.16 R
2271 3435 0.261991 ATGGAGGAGAGGTTCGCCTA 59.738 55.000 1.20 0.00 46.93 3.93 R
2317 3481 1.452145 GGCGAAGACAACAAGCCCAA 61.452 55.000 0.00 0.00 41.81 4.12 R
2829 3998 1.671054 CCCATCGCGACCACAAAGT 60.671 57.895 12.93 0.00 0.00 2.66 R
3344 4513 2.487762 GGATGCTCCAGACGATAGAGAG 59.512 54.545 0.00 0.00 36.28 3.20 R
4436 5605 1.146930 GAGGATGAAGGCGATGGCA 59.853 57.895 1.01 0.00 42.47 4.92 R
5475 6644 0.179234 TTGCCTTGGACAGACGACAA 59.821 50.000 0.00 0.00 0.00 3.18 R
6752 7924 1.289109 ACGTCCACGCATGCAACTAC 61.289 55.000 19.57 9.17 44.43 2.73 R
7357 8546 0.404040 TCACAAATGACACCCCTCCC 59.596 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 135 0.673333 AATCGACGGCATTGCAGACA 60.673 50.000 15.82 1.58 0.00 3.41
246 255 1.463674 GGCATTCCATCGAACACCTT 58.536 50.000 0.00 0.00 0.00 3.50
431 440 1.784301 TTCAGGCCATCAACCGGGAA 61.784 55.000 6.32 0.00 0.00 3.97
478 487 0.107897 CATTGGTCCCGATTCGTCCA 60.108 55.000 5.20 7.86 0.00 4.02
480 489 0.616371 TTGGTCCCGATTCGTCCAAT 59.384 50.000 17.34 0.00 33.95 3.16
511 520 0.754472 AAAAGGTCCAGACGAACCGA 59.246 50.000 0.00 0.00 40.63 4.69
530 539 3.860930 GACCAATGGCCCACGTGGT 62.861 63.158 31.80 18.59 36.04 4.16
586 595 2.002018 GCCCCCATTGATCCCGGTTA 62.002 60.000 0.00 0.00 0.00 2.85
651 661 4.695606 TCCCCCTTTTCTACTAGTGATGT 58.304 43.478 5.39 0.00 0.00 3.06
655 665 5.395768 CCCCTTTTCTACTAGTGATGTCTGG 60.396 48.000 5.39 0.00 0.00 3.86
656 666 5.395768 CCCTTTTCTACTAGTGATGTCTGGG 60.396 48.000 5.39 5.51 0.00 4.45
657 667 5.187967 CCTTTTCTACTAGTGATGTCTGGGT 59.812 44.000 5.39 0.00 0.00 4.51
658 668 6.295916 CCTTTTCTACTAGTGATGTCTGGGTT 60.296 42.308 5.39 0.00 0.00 4.11
659 669 5.661056 TTCTACTAGTGATGTCTGGGTTG 57.339 43.478 5.39 0.00 0.00 3.77
661 671 2.621070 ACTAGTGATGTCTGGGTTGGT 58.379 47.619 0.00 0.00 0.00 3.67
662 672 2.303022 ACTAGTGATGTCTGGGTTGGTG 59.697 50.000 0.00 0.00 0.00 4.17
663 673 1.140312 AGTGATGTCTGGGTTGGTGT 58.860 50.000 0.00 0.00 0.00 4.16
664 674 1.072331 AGTGATGTCTGGGTTGGTGTC 59.928 52.381 0.00 0.00 0.00 3.67
665 675 0.400213 TGATGTCTGGGTTGGTGTCC 59.600 55.000 0.00 0.00 0.00 4.02
670 680 4.692294 TGGGTTGGTGTCCCCATA 57.308 55.556 0.00 0.00 46.06 2.74
671 681 2.393416 TGGGTTGGTGTCCCCATAG 58.607 57.895 0.00 0.00 46.06 2.23
672 682 0.178858 TGGGTTGGTGTCCCCATAGA 60.179 55.000 0.00 0.00 46.06 1.98
675 685 1.065418 GGTTGGTGTCCCCATAGACTG 60.065 57.143 0.00 0.00 44.74 3.51
676 686 1.628846 GTTGGTGTCCCCATAGACTGT 59.371 52.381 0.00 0.00 44.74 3.55
677 687 1.275666 TGGTGTCCCCATAGACTGTG 58.724 55.000 0.00 0.00 38.72 3.66
678 688 1.276622 GGTGTCCCCATAGACTGTGT 58.723 55.000 0.00 0.00 37.66 3.72
679 689 1.066143 GGTGTCCCCATAGACTGTGTG 60.066 57.143 0.00 0.00 37.66 3.82
680 690 1.623811 GTGTCCCCATAGACTGTGTGT 59.376 52.381 0.00 0.00 37.66 3.72
681 691 2.038557 GTGTCCCCATAGACTGTGTGTT 59.961 50.000 0.00 0.00 37.66 3.32
683 693 3.513912 TGTCCCCATAGACTGTGTGTTAG 59.486 47.826 0.00 0.00 37.66 2.34
685 695 4.406003 GTCCCCATAGACTGTGTGTTAGAT 59.594 45.833 0.00 0.00 33.79 1.98
686 696 4.405680 TCCCCATAGACTGTGTGTTAGATG 59.594 45.833 0.00 0.00 0.00 2.90
687 697 4.162320 CCCCATAGACTGTGTGTTAGATGT 59.838 45.833 0.00 0.00 0.00 3.06
689 699 6.127168 CCCCATAGACTGTGTGTTAGATGTAA 60.127 42.308 0.00 0.00 0.00 2.41
691 701 7.277981 CCCATAGACTGTGTGTTAGATGTAAAC 59.722 40.741 0.00 0.00 0.00 2.01
693 703 9.371136 CATAGACTGTGTGTTAGATGTAAACAT 57.629 33.333 0.00 0.00 38.95 2.71
694 704 9.944376 ATAGACTGTGTGTTAGATGTAAACATT 57.056 29.630 0.00 0.00 38.95 2.71
695 705 8.311650 AGACTGTGTGTTAGATGTAAACATTC 57.688 34.615 0.00 0.00 38.95 2.67
696 706 7.387948 AGACTGTGTGTTAGATGTAAACATTCC 59.612 37.037 0.00 0.00 38.95 3.01
697 707 6.147164 ACTGTGTGTTAGATGTAAACATTCCG 59.853 38.462 0.00 0.00 38.95 4.30
699 709 6.706716 TGTGTGTTAGATGTAAACATTCCGAA 59.293 34.615 0.00 0.00 38.95 4.30
700 710 7.013529 GTGTGTTAGATGTAAACATTCCGAAC 58.986 38.462 0.00 0.16 38.95 3.95
701 711 6.932400 TGTGTTAGATGTAAACATTCCGAACT 59.068 34.615 0.00 0.00 38.95 3.01
702 712 8.089597 TGTGTTAGATGTAAACATTCCGAACTA 58.910 33.333 0.00 0.00 38.95 2.24
705 715 9.095065 GTTAGATGTAAACATTCCGAACTATGT 57.905 33.333 0.00 0.00 36.57 2.29
708 718 8.665685 AGATGTAAACATTCCGAACTATGTTTC 58.334 33.333 14.33 8.76 46.50 2.78
709 719 7.972832 TGTAAACATTCCGAACTATGTTTCT 57.027 32.000 14.33 0.00 46.50 2.52
711 721 9.491675 TGTAAACATTCCGAACTATGTTTCTTA 57.508 29.630 14.33 3.22 46.50 2.10
722 732 9.195831 CGAACTATGTTTCTTAAATAAAGCGAC 57.804 33.333 0.00 0.00 34.97 5.19
723 733 9.195831 GAACTATGTTTCTTAAATAAAGCGACG 57.804 33.333 0.00 0.00 34.97 5.12
724 734 7.681903 ACTATGTTTCTTAAATAAAGCGACGG 58.318 34.615 0.00 0.00 34.97 4.79
726 736 4.213694 TGTTTCTTAAATAAAGCGACGGCA 59.786 37.500 0.00 0.00 43.41 5.69
727 737 4.593597 TTCTTAAATAAAGCGACGGCAG 57.406 40.909 0.00 0.00 43.41 4.85
728 738 2.350498 TCTTAAATAAAGCGACGGCAGC 59.650 45.455 0.00 0.00 43.41 5.25
729 739 1.728068 TAAATAAAGCGACGGCAGCA 58.272 45.000 7.79 0.00 43.41 4.41
730 740 0.878416 AAATAAAGCGACGGCAGCAA 59.122 45.000 7.79 0.00 43.41 3.91
731 741 1.094785 AATAAAGCGACGGCAGCAAT 58.905 45.000 7.79 0.00 43.41 3.56
733 743 1.366111 TAAAGCGACGGCAGCAATCC 61.366 55.000 7.79 0.00 43.41 3.01
768 779 0.755327 AGAAAAGGCAGGCGTGGTTT 60.755 50.000 8.72 0.00 0.00 3.27
794 805 0.179150 AGATCGAACACGAGCAGCTC 60.179 55.000 12.94 12.94 43.46 4.09
803 814 4.459089 GAGCAGCTCGGACCCACC 62.459 72.222 6.67 0.00 0.00 4.61
805 816 4.329545 GCAGCTCGGACCCACCAA 62.330 66.667 0.00 0.00 38.90 3.67
807 818 3.637273 AGCTCGGACCCACCAACC 61.637 66.667 0.00 0.00 38.90 3.77
808 819 3.948719 GCTCGGACCCACCAACCA 61.949 66.667 0.00 0.00 38.90 3.67
810 821 2.446994 TCGGACCCACCAACCACT 60.447 61.111 0.00 0.00 38.90 4.00
811 822 1.152290 TCGGACCCACCAACCACTA 60.152 57.895 0.00 0.00 38.90 2.74
904 2021 1.476845 TAGGCTGCACTCCACCGAAA 61.477 55.000 0.50 0.00 0.00 3.46
924 2041 0.810031 CCTATATATGCACGCGGCCC 60.810 60.000 12.47 0.00 43.89 5.80
995 2120 2.440430 CCGCCGGAGAAGAGGAGA 60.440 66.667 5.05 0.00 0.00 3.71
1430 2573 1.593209 GCCACAACTCCGACAACGA 60.593 57.895 0.00 0.00 42.66 3.85
1624 2773 2.107901 TCCGCCTAAAAACCCTAAACCA 59.892 45.455 0.00 0.00 0.00 3.67
2064 3228 4.592192 CGATGGGATCGCAGCCGT 62.592 66.667 20.69 2.84 46.55 5.68
2271 3435 0.842030 TGTCTGGACAGGGCAGGATT 60.842 55.000 0.00 0.00 36.21 3.01
2317 3481 4.070552 GCTCTCTCCGGCCGTTGT 62.071 66.667 26.12 0.00 0.00 3.32
2374 3538 3.201290 CATGGACTATTCTTGAGCGCTT 58.799 45.455 13.26 0.00 0.00 4.68
2829 3998 2.515057 GGTCCACGTGTGTGCCAA 60.515 61.111 15.65 0.00 45.04 4.52
2913 4082 1.904771 TCTCGGCAATGACGGGAAT 59.095 52.632 9.38 0.00 42.29 3.01
3906 5075 4.095932 TCAGTAGAACGTAAGCATCGTCAT 59.904 41.667 0.00 0.00 40.69 3.06
3956 5125 1.811965 CCATGCATCTGTTCCGTTTCA 59.188 47.619 0.00 0.00 0.00 2.69
4165 5334 6.372103 TCGTTCCAAGAAGTGTGTTTTTCTTA 59.628 34.615 0.00 0.00 40.62 2.10
4436 5605 1.625818 AGTGCCATCTTCCTCTTCGTT 59.374 47.619 0.00 0.00 0.00 3.85
5063 6232 1.145598 CATCCTCTGAGCCACGCAT 59.854 57.895 0.00 0.00 0.00 4.73
5167 6336 4.566488 GGACTCTTGTTCCTCCACAATCAT 60.566 45.833 0.00 0.00 36.08 2.45
5818 6987 6.426646 AGAAGTACTCTCTGGATTTGTTGT 57.573 37.500 0.00 0.00 0.00 3.32
6039 7208 0.673644 CCCGTGACACTCATTGGTCC 60.674 60.000 3.68 0.00 33.09 4.46
6449 7618 5.122519 TGAAGTTGACTATCACTTTGTGCA 58.877 37.500 0.00 0.00 32.98 4.57
6733 7905 5.705441 CCAAAGCCTATTGTCTTACACTGAA 59.295 40.000 0.00 0.00 0.00 3.02
6752 7924 3.748048 TGAAGCTTCAGGTTGATCTTTCG 59.252 43.478 25.16 0.00 35.69 3.46
6769 7941 1.011968 TCGTAGTTGCATGCGTGGAC 61.012 55.000 14.09 9.04 0.00 4.02
6807 7987 3.988379 TGATCTGACTTGTTTGCAACC 57.012 42.857 0.00 0.00 0.00 3.77
6808 7988 2.290367 TGATCTGACTTGTTTGCAACCG 59.710 45.455 0.00 0.00 0.00 4.44
6809 7989 1.745232 TCTGACTTGTTTGCAACCGT 58.255 45.000 0.00 0.00 0.00 4.83
6810 7990 1.400142 TCTGACTTGTTTGCAACCGTG 59.600 47.619 0.00 0.00 0.00 4.94
7049 8233 1.302431 CAACCACCAGCACATCGGA 60.302 57.895 0.00 0.00 0.00 4.55
7167 8351 1.300963 GCATCCAAGGACAGCAGGA 59.699 57.895 9.68 0.00 34.12 3.86
7180 8364 0.685097 AGCAGGACCGCTTAGTTCAA 59.315 50.000 5.18 0.00 39.99 2.69
7240 8424 7.672122 AGGTTATTACTTAGATTTCGGGACT 57.328 36.000 0.00 0.00 0.00 3.85
7269 8453 2.821378 CTGTCATGCTTTCCATTGTGGA 59.179 45.455 0.00 0.00 46.61 4.02
7303 8487 5.621197 TTGGACTTTGGTCGAATTATGTG 57.379 39.130 0.00 0.00 42.97 3.21
7307 8491 3.756434 ACTTTGGTCGAATTATGTGTGGG 59.244 43.478 0.00 0.00 0.00 4.61
7322 8506 8.665643 TTATGTGTGGGAAGTTTTATATACCG 57.334 34.615 0.00 0.00 0.00 4.02
7341 8530 2.232941 CCGTTAGGGTGACTAGCAAGAA 59.767 50.000 0.00 0.00 32.93 2.52
7342 8531 3.512680 CGTTAGGGTGACTAGCAAGAAG 58.487 50.000 0.00 0.00 32.93 2.85
7380 8569 0.596082 GGGGTGTCATTTGTGAACGG 59.404 55.000 0.00 0.00 0.00 4.44
7385 8574 3.794564 GGTGTCATTTGTGAACGGTTTTC 59.205 43.478 0.00 0.00 0.00 2.29
7386 8575 4.416620 GTGTCATTTGTGAACGGTTTTCA 58.583 39.130 0.00 0.00 0.00 2.69
7392 8581 3.961477 TGTGAACGGTTTTCATGACAG 57.039 42.857 0.00 0.00 0.00 3.51
7393 8582 3.536570 TGTGAACGGTTTTCATGACAGA 58.463 40.909 0.00 0.00 0.00 3.41
7394 8583 4.133820 TGTGAACGGTTTTCATGACAGAT 58.866 39.130 0.00 0.00 0.00 2.90
7395 8584 4.578516 TGTGAACGGTTTTCATGACAGATT 59.421 37.500 0.00 0.00 0.00 2.40
7396 8585 5.067153 TGTGAACGGTTTTCATGACAGATTT 59.933 36.000 0.00 0.00 0.00 2.17
7397 8586 6.261158 TGTGAACGGTTTTCATGACAGATTTA 59.739 34.615 0.00 0.00 0.00 1.40
7398 8587 6.797033 GTGAACGGTTTTCATGACAGATTTAG 59.203 38.462 0.00 0.00 0.00 1.85
7399 8588 6.485313 TGAACGGTTTTCATGACAGATTTAGT 59.515 34.615 0.00 0.00 0.00 2.24
7400 8589 6.877611 ACGGTTTTCATGACAGATTTAGTT 57.122 33.333 0.00 0.00 0.00 2.24
7401 8590 6.668323 ACGGTTTTCATGACAGATTTAGTTG 58.332 36.000 0.00 0.00 0.00 3.16
7402 8591 6.262273 ACGGTTTTCATGACAGATTTAGTTGT 59.738 34.615 0.00 0.00 0.00 3.32
7403 8592 6.578545 CGGTTTTCATGACAGATTTAGTTGTG 59.421 38.462 0.00 0.00 0.00 3.33
7404 8593 7.519809 CGGTTTTCATGACAGATTTAGTTGTGA 60.520 37.037 0.00 0.00 0.00 3.58
7405 8594 7.805071 GGTTTTCATGACAGATTTAGTTGTGAG 59.195 37.037 0.00 0.00 0.00 3.51
7406 8595 7.439157 TTTCATGACAGATTTAGTTGTGAGG 57.561 36.000 0.00 0.00 0.00 3.86
7407 8596 6.358974 TCATGACAGATTTAGTTGTGAGGA 57.641 37.500 0.00 0.00 0.00 3.71
7408 8597 6.768483 TCATGACAGATTTAGTTGTGAGGAA 58.232 36.000 0.00 0.00 0.00 3.36
7409 8598 6.650807 TCATGACAGATTTAGTTGTGAGGAAC 59.349 38.462 0.00 0.00 0.00 3.62
7410 8599 4.988540 TGACAGATTTAGTTGTGAGGAACG 59.011 41.667 0.00 0.00 0.00 3.95
7411 8600 5.209818 ACAGATTTAGTTGTGAGGAACGA 57.790 39.130 0.00 0.00 0.00 3.85
7412 8601 5.794894 ACAGATTTAGTTGTGAGGAACGAT 58.205 37.500 0.00 0.00 0.00 3.73
7413 8602 6.931838 ACAGATTTAGTTGTGAGGAACGATA 58.068 36.000 0.00 0.00 0.00 2.92
7414 8603 7.036220 ACAGATTTAGTTGTGAGGAACGATAG 58.964 38.462 0.00 0.00 46.19 2.08
7430 8619 4.232641 CGATAGTTTCTTCAGACGCAAC 57.767 45.455 0.00 0.00 0.00 4.17
7431 8620 3.673338 CGATAGTTTCTTCAGACGCAACA 59.327 43.478 0.00 0.00 0.00 3.33
7432 8621 4.327357 CGATAGTTTCTTCAGACGCAACAT 59.673 41.667 0.00 0.00 0.00 2.71
7433 8622 3.885484 AGTTTCTTCAGACGCAACATG 57.115 42.857 0.00 0.00 0.00 3.21
7434 8623 3.466836 AGTTTCTTCAGACGCAACATGA 58.533 40.909 0.00 0.00 0.00 3.07
7435 8624 3.496130 AGTTTCTTCAGACGCAACATGAG 59.504 43.478 0.00 0.00 0.00 2.90
7436 8625 2.820059 TCTTCAGACGCAACATGAGT 57.180 45.000 0.00 0.00 31.65 3.41
7437 8626 2.407090 TCTTCAGACGCAACATGAGTG 58.593 47.619 0.00 0.33 28.29 3.51
7438 8627 2.138320 CTTCAGACGCAACATGAGTGT 58.862 47.619 0.00 4.08 41.28 3.55
7440 8629 2.560504 TCAGACGCAACATGAGTGTTT 58.439 42.857 0.00 0.00 46.07 2.83
7441 8630 2.543848 TCAGACGCAACATGAGTGTTTC 59.456 45.455 0.00 0.00 46.07 2.78
7442 8631 1.873591 AGACGCAACATGAGTGTTTCC 59.126 47.619 0.00 0.00 46.07 3.13
7443 8632 0.586319 ACGCAACATGAGTGTTTCCG 59.414 50.000 0.00 8.59 46.07 4.30
7444 8633 0.586319 CGCAACATGAGTGTTTCCGT 59.414 50.000 0.00 0.00 46.07 4.69
7445 8634 1.660052 CGCAACATGAGTGTTTCCGTG 60.660 52.381 0.00 0.00 46.07 4.94
7446 8635 1.601903 GCAACATGAGTGTTTCCGTGA 59.398 47.619 0.00 0.00 46.07 4.35
7447 8636 2.349817 GCAACATGAGTGTTTCCGTGAG 60.350 50.000 0.00 0.00 46.07 3.51
7448 8637 3.130633 CAACATGAGTGTTTCCGTGAGA 58.869 45.455 0.00 0.00 46.07 3.27
7449 8638 3.032017 ACATGAGTGTTTCCGTGAGAG 57.968 47.619 0.00 0.00 34.01 3.20
7450 8639 2.628178 ACATGAGTGTTTCCGTGAGAGA 59.372 45.455 0.00 0.00 34.01 3.10
7451 8640 3.259374 ACATGAGTGTTTCCGTGAGAGAT 59.741 43.478 0.00 0.00 34.01 2.75
7452 8641 4.462834 ACATGAGTGTTTCCGTGAGAGATA 59.537 41.667 0.00 0.00 34.01 1.98
7453 8642 4.703645 TGAGTGTTTCCGTGAGAGATAG 57.296 45.455 0.00 0.00 0.00 2.08
7454 8643 4.332828 TGAGTGTTTCCGTGAGAGATAGA 58.667 43.478 0.00 0.00 0.00 1.98
7455 8644 4.156190 TGAGTGTTTCCGTGAGAGATAGAC 59.844 45.833 0.00 0.00 0.00 2.59
7456 8645 4.337145 AGTGTTTCCGTGAGAGATAGACT 58.663 43.478 0.00 0.00 0.00 3.24
7457 8646 5.498393 AGTGTTTCCGTGAGAGATAGACTA 58.502 41.667 0.00 0.00 0.00 2.59
7458 8647 5.944599 AGTGTTTCCGTGAGAGATAGACTAA 59.055 40.000 0.00 0.00 0.00 2.24
7459 8648 6.433404 AGTGTTTCCGTGAGAGATAGACTAAA 59.567 38.462 0.00 0.00 0.00 1.85
7460 8649 7.039923 AGTGTTTCCGTGAGAGATAGACTAAAA 60.040 37.037 0.00 0.00 0.00 1.52
7461 8650 7.062022 GTGTTTCCGTGAGAGATAGACTAAAAC 59.938 40.741 0.00 0.00 0.00 2.43
7462 8651 7.039923 TGTTTCCGTGAGAGATAGACTAAAACT 60.040 37.037 0.00 0.00 0.00 2.66
7463 8652 6.438259 TCCGTGAGAGATAGACTAAAACTG 57.562 41.667 0.00 0.00 0.00 3.16
7464 8653 6.178324 TCCGTGAGAGATAGACTAAAACTGA 58.822 40.000 0.00 0.00 0.00 3.41
7465 8654 6.316640 TCCGTGAGAGATAGACTAAAACTGAG 59.683 42.308 0.00 0.00 0.00 3.35
7466 8655 5.968848 CGTGAGAGATAGACTAAAACTGAGC 59.031 44.000 0.00 0.00 0.00 4.26
7467 8656 6.270064 GTGAGAGATAGACTAAAACTGAGCC 58.730 44.000 0.00 0.00 0.00 4.70
7468 8657 5.952347 TGAGAGATAGACTAAAACTGAGCCA 59.048 40.000 0.00 0.00 0.00 4.75
7469 8658 6.609212 TGAGAGATAGACTAAAACTGAGCCAT 59.391 38.462 0.00 0.00 0.00 4.40
7470 8659 7.124901 TGAGAGATAGACTAAAACTGAGCCATT 59.875 37.037 0.00 0.00 0.00 3.16
7471 8660 7.856415 AGAGATAGACTAAAACTGAGCCATTT 58.144 34.615 0.00 0.00 0.00 2.32
7472 8661 7.768120 AGAGATAGACTAAAACTGAGCCATTTG 59.232 37.037 0.00 0.00 0.00 2.32
7473 8662 6.825721 AGATAGACTAAAACTGAGCCATTTGG 59.174 38.462 0.00 0.00 38.53 3.28
7474 8663 4.729868 AGACTAAAACTGAGCCATTTGGT 58.270 39.130 0.00 0.00 37.57 3.67
7475 8664 5.140454 AGACTAAAACTGAGCCATTTGGTT 58.860 37.500 0.00 0.00 37.57 3.67
7476 8665 5.010012 AGACTAAAACTGAGCCATTTGGTTG 59.990 40.000 0.00 0.00 37.57 3.77
7477 8666 4.892934 ACTAAAACTGAGCCATTTGGTTGA 59.107 37.500 0.00 0.00 37.57 3.18
7478 8667 4.961438 AAAACTGAGCCATTTGGTTGAT 57.039 36.364 0.00 0.00 37.57 2.57
7479 8668 6.719370 ACTAAAACTGAGCCATTTGGTTGATA 59.281 34.615 0.00 0.00 37.57 2.15
7480 8669 5.649782 AAACTGAGCCATTTGGTTGATAG 57.350 39.130 0.00 0.00 37.57 2.08
7481 8670 4.574674 ACTGAGCCATTTGGTTGATAGA 57.425 40.909 0.00 0.00 37.57 1.98
7482 8671 4.922206 ACTGAGCCATTTGGTTGATAGAA 58.078 39.130 0.00 0.00 37.57 2.10
7483 8672 5.324409 ACTGAGCCATTTGGTTGATAGAAA 58.676 37.500 0.00 0.00 37.57 2.52
7484 8673 5.954150 ACTGAGCCATTTGGTTGATAGAAAT 59.046 36.000 0.00 0.00 37.57 2.17
7485 8674 7.118723 ACTGAGCCATTTGGTTGATAGAAATA 58.881 34.615 0.00 0.00 37.57 1.40
7486 8675 7.284034 ACTGAGCCATTTGGTTGATAGAAATAG 59.716 37.037 0.00 0.00 37.57 1.73
7487 8676 7.345691 TGAGCCATTTGGTTGATAGAAATAGA 58.654 34.615 0.00 0.00 37.57 1.98
7488 8677 8.000709 TGAGCCATTTGGTTGATAGAAATAGAT 58.999 33.333 0.00 0.00 37.57 1.98
7489 8678 8.773033 AGCCATTTGGTTGATAGAAATAGATT 57.227 30.769 0.00 0.00 37.57 2.40
7490 8679 8.854117 AGCCATTTGGTTGATAGAAATAGATTC 58.146 33.333 0.00 0.00 36.51 2.52
7491 8680 8.084684 GCCATTTGGTTGATAGAAATAGATTCC 58.915 37.037 0.00 0.00 36.75 3.01
7492 8681 9.359653 CCATTTGGTTGATAGAAATAGATTCCT 57.640 33.333 0.00 0.00 38.94 3.36
7522 8711 8.043710 CCTACATAGGATTGGTTCATATTCTCC 58.956 40.741 0.00 0.00 46.63 3.71
7523 8712 7.392766 ACATAGGATTGGTTCATATTCTCCA 57.607 36.000 0.00 0.00 29.02 3.86
7524 8713 7.227156 ACATAGGATTGGTTCATATTCTCCAC 58.773 38.462 0.00 0.00 29.02 4.02
7525 8714 5.715439 AGGATTGGTTCATATTCTCCACA 57.285 39.130 0.00 0.00 0.00 4.17
7526 8715 6.271585 AGGATTGGTTCATATTCTCCACAT 57.728 37.500 0.00 0.00 0.00 3.21
7527 8716 6.676558 AGGATTGGTTCATATTCTCCACATT 58.323 36.000 0.00 0.00 0.00 2.71
7528 8717 7.128077 AGGATTGGTTCATATTCTCCACATTT 58.872 34.615 0.00 0.00 0.00 2.32
7529 8718 7.286316 AGGATTGGTTCATATTCTCCACATTTC 59.714 37.037 0.00 0.00 0.00 2.17
7530 8719 7.068593 GGATTGGTTCATATTCTCCACATTTCA 59.931 37.037 0.00 0.00 0.00 2.69
7531 8720 7.773489 TTGGTTCATATTCTCCACATTTCAA 57.227 32.000 0.00 0.00 0.00 2.69
7532 8721 7.773489 TGGTTCATATTCTCCACATTTCAAA 57.227 32.000 0.00 0.00 0.00 2.69
7533 8722 7.829725 TGGTTCATATTCTCCACATTTCAAAG 58.170 34.615 0.00 0.00 0.00 2.77
7534 8723 7.093814 TGGTTCATATTCTCCACATTTCAAAGG 60.094 37.037 0.00 0.00 0.00 3.11
7535 8724 7.122650 GGTTCATATTCTCCACATTTCAAAGGA 59.877 37.037 0.00 0.00 0.00 3.36
7536 8725 8.522830 GTTCATATTCTCCACATTTCAAAGGAA 58.477 33.333 0.00 0.00 0.00 3.36
7537 8726 8.648698 TCATATTCTCCACATTTCAAAGGAAA 57.351 30.769 0.00 0.00 46.36 3.13
7538 8727 9.087871 TCATATTCTCCACATTTCAAAGGAAAA 57.912 29.630 0.00 0.00 45.52 2.29
7539 8728 9.880157 CATATTCTCCACATTTCAAAGGAAAAT 57.120 29.630 0.00 0.00 45.52 1.82
7550 8739 9.830294 CATTTCAAAGGAAAATAAATTTGAGCC 57.170 29.630 0.00 0.00 45.52 4.70
7551 8740 9.797642 ATTTCAAAGGAAAATAAATTTGAGCCT 57.202 25.926 0.00 0.00 45.52 4.58
7553 8742 9.927668 TTCAAAGGAAAATAAATTTGAGCCTAG 57.072 29.630 0.00 0.00 41.28 3.02
7554 8743 9.308000 TCAAAGGAAAATAAATTTGAGCCTAGA 57.692 29.630 0.00 1.10 36.89 2.43
7555 8744 9.358872 CAAAGGAAAATAAATTTGAGCCTAGAC 57.641 33.333 0.00 0.00 35.19 2.59
7556 8745 8.885693 AAGGAAAATAAATTTGAGCCTAGACT 57.114 30.769 0.00 0.00 31.02 3.24
7557 8746 8.512966 AGGAAAATAAATTTGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
7558 8747 8.109634 AGGAAAATAAATTTGAGCCTAGACTCA 58.890 33.333 4.41 4.41 44.84 3.41
7559 8748 8.401709 GGAAAATAAATTTGAGCCTAGACTCAG 58.598 37.037 8.84 0.00 46.85 3.35
7560 8749 8.870075 AAAATAAATTTGAGCCTAGACTCAGT 57.130 30.769 8.84 0.01 46.85 3.41
7561 8750 7.856145 AATAAATTTGAGCCTAGACTCAGTG 57.144 36.000 8.84 0.00 46.85 3.66
7562 8751 5.489792 AAATTTGAGCCTAGACTCAGTGA 57.510 39.130 8.84 0.77 46.85 3.41
7563 8752 5.489792 AATTTGAGCCTAGACTCAGTGAA 57.510 39.130 8.84 1.78 46.85 3.18
7564 8753 4.955811 TTTGAGCCTAGACTCAGTGAAA 57.044 40.909 8.84 0.00 46.85 2.69
7565 8754 4.955811 TTGAGCCTAGACTCAGTGAAAA 57.044 40.909 8.84 0.00 46.85 2.29
7566 8755 4.955811 TGAGCCTAGACTCAGTGAAAAA 57.044 40.909 4.41 0.00 41.72 1.94
7659 8848 7.873719 TCTTTTTCATACTTCAAACCTCACA 57.126 32.000 0.00 0.00 0.00 3.58
7660 8849 8.287439 TCTTTTTCATACTTCAAACCTCACAA 57.713 30.769 0.00 0.00 0.00 3.33
7668 8857 5.070685 ACTTCAAACCTCACAATTAGTCCC 58.929 41.667 0.00 0.00 0.00 4.46
7671 8860 5.313712 TCAAACCTCACAATTAGTCCCTTC 58.686 41.667 0.00 0.00 0.00 3.46
7672 8861 3.611766 ACCTCACAATTAGTCCCTTCG 57.388 47.619 0.00 0.00 0.00 3.79
7674 8863 3.581332 ACCTCACAATTAGTCCCTTCGAA 59.419 43.478 0.00 0.00 0.00 3.71
7678 8867 3.933332 CACAATTAGTCCCTTCGAACCTC 59.067 47.826 0.00 0.00 0.00 3.85
7680 8869 4.041198 ACAATTAGTCCCTTCGAACCTCAA 59.959 41.667 0.00 0.00 0.00 3.02
7723 8920 4.743018 CCAACCTTGGCCTACAGG 57.257 61.111 3.32 9.57 42.21 4.00
7728 8925 2.039879 CAACCTTGGCCTACAGGTTAGT 59.960 50.000 25.42 9.32 38.02 2.24
7729 8926 1.907255 ACCTTGGCCTACAGGTTAGTC 59.093 52.381 14.29 0.00 37.57 2.59
7730 8927 1.209747 CCTTGGCCTACAGGTTAGTCC 59.790 57.143 3.32 0.00 37.57 3.85
7731 8928 1.209747 CTTGGCCTACAGGTTAGTCCC 59.790 57.143 3.32 0.00 37.57 4.46
7732 8929 0.416231 TGGCCTACAGGTTAGTCCCT 59.584 55.000 3.32 0.00 37.57 4.20
7734 8931 1.621622 GGCCTACAGGTTAGTCCCTCA 60.622 57.143 0.00 0.00 37.57 3.86
7736 8933 2.816411 CCTACAGGTTAGTCCCTCACA 58.184 52.381 0.00 0.00 36.75 3.58
7740 8937 2.775384 ACAGGTTAGTCCCTCACAACAA 59.225 45.455 0.00 0.00 36.75 2.83
7741 8938 3.139077 CAGGTTAGTCCCTCACAACAAC 58.861 50.000 0.00 0.00 36.75 3.32
7748 8945 2.693074 GTCCCTCACAACAACAACCAAT 59.307 45.455 0.00 0.00 0.00 3.16
7753 8950 4.984161 CCTCACAACAACAACCAATTGATC 59.016 41.667 7.12 0.00 39.30 2.92
7756 8953 6.734137 TCACAACAACAACCAATTGATCTAC 58.266 36.000 7.12 0.00 39.30 2.59
7757 8954 6.319911 TCACAACAACAACCAATTGATCTACA 59.680 34.615 7.12 0.00 39.30 2.74
7767 8964 6.924111 ACCAATTGATCTACAACACAATTCC 58.076 36.000 7.12 0.00 41.52 3.01
7768 8965 6.071391 ACCAATTGATCTACAACACAATTCCC 60.071 38.462 7.12 0.00 41.52 3.97
7769 8966 6.071447 CCAATTGATCTACAACACAATTCCCA 60.071 38.462 7.12 0.00 41.52 4.37
7771 8968 5.241403 TGATCTACAACACAATTCCCACT 57.759 39.130 0.00 0.00 0.00 4.00
7776 8973 7.016153 TCTACAACACAATTCCCACTTAGAT 57.984 36.000 0.00 0.00 0.00 1.98
7777 8974 5.964958 ACAACACAATTCCCACTTAGATG 57.035 39.130 0.00 0.00 0.00 2.90
7780 8977 6.207417 ACAACACAATTCCCACTTAGATGAAG 59.793 38.462 0.00 0.00 41.37 3.02
7803 9000 4.082136 GGAACTTCAGTCTATTGAGTCCGT 60.082 45.833 0.00 0.00 0.00 4.69
7804 9001 5.470047 AACTTCAGTCTATTGAGTCCGTT 57.530 39.130 0.00 0.00 0.00 4.44
7805 9002 5.061920 ACTTCAGTCTATTGAGTCCGTTC 57.938 43.478 0.00 0.00 0.00 3.95
7806 9003 4.082136 ACTTCAGTCTATTGAGTCCGTTCC 60.082 45.833 0.00 0.00 0.00 3.62
7807 9004 3.427573 TCAGTCTATTGAGTCCGTTCCA 58.572 45.455 0.00 0.00 0.00 3.53
7809 9006 2.496470 AGTCTATTGAGTCCGTTCCACC 59.504 50.000 0.00 0.00 0.00 4.61
7810 9007 1.829222 TCTATTGAGTCCGTTCCACCC 59.171 52.381 0.00 0.00 0.00 4.61
7811 9008 0.533491 TATTGAGTCCGTTCCACCCG 59.467 55.000 0.00 0.00 0.00 5.28
7812 9009 2.798148 ATTGAGTCCGTTCCACCCGC 62.798 60.000 0.00 0.00 0.00 6.13
7949 9155 7.551035 TCCAAACAAAATGAGAATTTTGGTG 57.449 32.000 21.52 18.34 46.98 4.17
8075 9282 9.605275 TCATGAATTTTTAAAACAATGTCCACA 57.395 25.926 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 116 0.673333 TGTCTGCAATGCCGTCGATT 60.673 50.000 1.53 0.00 0.00 3.34
117 126 2.671070 CCCGTCCCTGTCTGCAAT 59.329 61.111 0.00 0.00 0.00 3.56
118 127 3.636231 CCCCGTCCCTGTCTGCAA 61.636 66.667 0.00 0.00 0.00 4.08
246 255 0.250234 GCTCACCTCCTATGCACACA 59.750 55.000 0.00 0.00 0.00 3.72
478 487 1.627864 CCTTTTGGTCCCGGTTGATT 58.372 50.000 0.00 0.00 34.07 2.57
480 489 4.911901 CCTTTTGGTCCCGGTTGA 57.088 55.556 0.00 0.00 34.07 3.18
511 520 2.034066 CACGTGGGCCATTGGTCT 59.966 61.111 10.70 0.00 0.00 3.85
586 595 3.435026 CCATTAGTCCCGGTTCAATCCAT 60.435 47.826 0.00 0.00 0.00 3.41
662 672 3.767673 TCTAACACACAGTCTATGGGGAC 59.232 47.826 0.00 0.00 36.22 4.46
663 673 4.055710 TCTAACACACAGTCTATGGGGA 57.944 45.455 0.00 0.00 36.22 4.81
664 674 4.162320 ACATCTAACACACAGTCTATGGGG 59.838 45.833 0.00 0.00 36.22 4.96
665 675 5.344743 ACATCTAACACACAGTCTATGGG 57.655 43.478 0.00 0.00 38.76 4.00
668 678 9.944376 AATGTTTACATCTAACACACAGTCTAT 57.056 29.630 0.00 0.00 38.23 1.98
669 679 9.419297 GAATGTTTACATCTAACACACAGTCTA 57.581 33.333 0.00 0.00 38.23 2.59
670 680 7.387948 GGAATGTTTACATCTAACACACAGTCT 59.612 37.037 0.00 0.00 38.23 3.24
671 681 7.519002 GGAATGTTTACATCTAACACACAGTC 58.481 38.462 0.00 0.00 38.23 3.51
672 682 6.147164 CGGAATGTTTACATCTAACACACAGT 59.853 38.462 0.00 0.00 38.23 3.55
675 685 6.715344 TCGGAATGTTTACATCTAACACAC 57.285 37.500 0.00 0.00 38.23 3.82
676 686 6.932400 AGTTCGGAATGTTTACATCTAACACA 59.068 34.615 0.00 0.00 38.23 3.72
677 687 7.360575 AGTTCGGAATGTTTACATCTAACAC 57.639 36.000 0.00 0.00 38.23 3.32
678 688 9.093970 CATAGTTCGGAATGTTTACATCTAACA 57.906 33.333 0.00 0.00 39.58 2.41
679 689 9.095065 ACATAGTTCGGAATGTTTACATCTAAC 57.905 33.333 0.00 0.20 35.10 2.34
680 690 9.661563 AACATAGTTCGGAATGTTTACATCTAA 57.338 29.630 3.08 0.00 42.22 2.10
694 704 8.385111 CGCTTTATTTAAGAAACATAGTTCGGA 58.615 33.333 0.00 0.00 35.80 4.55
695 705 8.385111 TCGCTTTATTTAAGAAACATAGTTCGG 58.615 33.333 0.00 0.00 35.80 4.30
696 706 9.195831 GTCGCTTTATTTAAGAAACATAGTTCG 57.804 33.333 0.00 0.00 35.80 3.95
697 707 9.195831 CGTCGCTTTATTTAAGAAACATAGTTC 57.804 33.333 0.00 0.00 35.80 3.01
699 709 7.675637 GCCGTCGCTTTATTTAAGAAACATAGT 60.676 37.037 0.00 0.00 35.80 2.12
700 710 6.627671 GCCGTCGCTTTATTTAAGAAACATAG 59.372 38.462 0.00 0.00 35.80 2.23
701 711 6.092396 TGCCGTCGCTTTATTTAAGAAACATA 59.908 34.615 0.00 0.00 35.80 2.29
702 712 5.106475 TGCCGTCGCTTTATTTAAGAAACAT 60.106 36.000 0.00 0.00 35.80 2.71
705 715 4.670735 GCTGCCGTCGCTTTATTTAAGAAA 60.671 41.667 0.00 0.00 35.80 2.52
708 718 2.095213 TGCTGCCGTCGCTTTATTTAAG 59.905 45.455 0.00 0.00 36.90 1.85
709 719 2.077627 TGCTGCCGTCGCTTTATTTAA 58.922 42.857 0.00 0.00 35.36 1.52
711 721 0.878416 TTGCTGCCGTCGCTTTATTT 59.122 45.000 0.00 0.00 35.36 1.40
712 722 1.064060 GATTGCTGCCGTCGCTTTATT 59.936 47.619 0.00 0.00 35.36 1.40
713 723 0.657840 GATTGCTGCCGTCGCTTTAT 59.342 50.000 0.00 0.00 35.36 1.40
714 724 1.366111 GGATTGCTGCCGTCGCTTTA 61.366 55.000 0.00 0.00 35.36 1.85
715 725 2.690778 GGATTGCTGCCGTCGCTTT 61.691 57.895 0.00 0.00 35.36 3.51
716 726 2.238847 TAGGATTGCTGCCGTCGCTT 62.239 55.000 0.00 0.00 35.36 4.68
718 728 1.366111 TTTAGGATTGCTGCCGTCGC 61.366 55.000 0.00 0.00 0.00 5.19
745 755 0.239347 CACGCCTGCCTTTTCTTCTG 59.761 55.000 0.00 0.00 0.00 3.02
768 779 0.955905 TCGTGTTCGATCTGGTCACA 59.044 50.000 0.00 0.00 41.35 3.58
794 805 0.604511 GTTAGTGGTTGGTGGGTCCG 60.605 60.000 0.00 0.00 39.52 4.79
797 808 0.476771 CTGGTTAGTGGTTGGTGGGT 59.523 55.000 0.00 0.00 0.00 4.51
798 809 0.768622 TCTGGTTAGTGGTTGGTGGG 59.231 55.000 0.00 0.00 0.00 4.61
802 813 0.320374 TCGCTCTGGTTAGTGGTTGG 59.680 55.000 0.00 0.00 0.00 3.77
803 814 2.163818 TTCGCTCTGGTTAGTGGTTG 57.836 50.000 0.00 0.00 0.00 3.77
804 815 2.674177 CGATTCGCTCTGGTTAGTGGTT 60.674 50.000 0.00 0.00 0.00 3.67
805 816 1.135083 CGATTCGCTCTGGTTAGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
807 818 1.134367 TCCGATTCGCTCTGGTTAGTG 59.866 52.381 0.00 0.00 0.00 2.74
808 819 1.134560 GTCCGATTCGCTCTGGTTAGT 59.865 52.381 0.00 0.00 0.00 2.24
810 821 0.099968 CGTCCGATTCGCTCTGGTTA 59.900 55.000 0.00 0.00 0.00 2.85
811 822 1.153823 CGTCCGATTCGCTCTGGTT 60.154 57.895 0.00 0.00 0.00 3.67
833 844 2.361610 GGGTGGGATGTGGCTGTG 60.362 66.667 0.00 0.00 0.00 3.66
834 845 4.033776 CGGGTGGGATGTGGCTGT 62.034 66.667 0.00 0.00 0.00 4.40
841 852 3.859118 TTGGTGCACGGGTGGGATG 62.859 63.158 11.45 0.00 0.00 3.51
843 854 3.561120 GATTGGTGCACGGGTGGGA 62.561 63.158 11.45 0.00 0.00 4.37
879 890 0.394938 TGGAGTGCAGCCTACGAAAA 59.605 50.000 7.04 0.00 0.00 2.29
904 2021 0.108329 GGCCGCGTGCATATATAGGT 60.108 55.000 18.87 0.00 43.89 3.08
933 2050 1.217244 GTGGGACGTGAAGGCGTAT 59.783 57.895 0.00 0.00 45.79 3.06
956 2076 0.102300 GCAGCGAGGGTTTTGTGTTT 59.898 50.000 0.00 0.00 0.00 2.83
995 2120 2.650813 GATCACGCGGCCCATCTCTT 62.651 60.000 12.47 0.00 0.00 2.85
1430 2573 0.258774 AGAAACTTGCCTGGTGGTGT 59.741 50.000 0.00 0.00 35.27 4.16
1514 2661 4.094216 AGGGGTGGCCTATCACATATAT 57.906 45.455 3.32 0.00 39.27 0.86
1515 2662 3.577968 AGGGGTGGCCTATCACATATA 57.422 47.619 3.32 0.00 39.27 0.86
1516 2663 2.440494 AGGGGTGGCCTATCACATAT 57.560 50.000 3.32 0.00 39.27 1.78
1517 2664 2.453212 TCTAGGGGTGGCCTATCACATA 59.547 50.000 3.32 0.00 39.27 2.29
1518 2665 1.223077 TCTAGGGGTGGCCTATCACAT 59.777 52.381 3.32 0.00 39.27 3.21
1519 2666 0.639943 TCTAGGGGTGGCCTATCACA 59.360 55.000 3.32 0.00 39.27 3.58
1676 2840 1.665916 CATCATAGCAGTCGGGCGG 60.666 63.158 0.00 0.00 39.27 6.13
1790 2954 3.138798 CTCCGTGTCCCGATCGGT 61.139 66.667 31.22 0.00 43.94 4.69
2064 3228 0.937699 CCGAAGTGAAACAGCGACGA 60.938 55.000 0.00 0.00 41.43 4.20
2071 3235 1.071542 TGAGATGGCCGAAGTGAAACA 59.928 47.619 0.00 0.00 41.43 2.83
2271 3435 0.261991 ATGGAGGAGAGGTTCGCCTA 59.738 55.000 1.20 0.00 46.93 3.93
2317 3481 1.452145 GGCGAAGACAACAAGCCCAA 61.452 55.000 0.00 0.00 41.81 4.12
2829 3998 1.671054 CCCATCGCGACCACAAAGT 60.671 57.895 12.93 0.00 0.00 2.66
3344 4513 2.487762 GGATGCTCCAGACGATAGAGAG 59.512 54.545 0.00 0.00 36.28 3.20
3906 5075 4.284490 AGAGTCAGACCAGCTTCAACAATA 59.716 41.667 0.00 0.00 0.00 1.90
4436 5605 1.146930 GAGGATGAAGGCGATGGCA 59.853 57.895 1.01 0.00 42.47 4.92
4642 5811 2.673523 GCCTGGTGATGACTGCCT 59.326 61.111 0.00 0.00 0.00 4.75
4873 6042 2.892425 CGCCGGAGATGCAGGAAC 60.892 66.667 5.05 0.00 33.08 3.62
5012 6181 4.156622 CAGACATGCACGCCGCTG 62.157 66.667 0.00 0.00 43.06 5.18
5167 6336 6.924913 TTTGGAATCAATGACATTTACCCA 57.075 33.333 0.00 1.59 32.28 4.51
5475 6644 0.179234 TTGCCTTGGACAGACGACAA 59.821 50.000 0.00 0.00 0.00 3.18
5818 6987 1.069204 CTTAAGCATCCCAGCTCGCTA 59.931 52.381 0.00 0.00 45.89 4.26
6185 7354 4.287067 TCAGGTTAGAGCCAAAGAAGACAT 59.713 41.667 0.00 0.00 0.00 3.06
6449 7618 2.297315 TGCTTCTGAGAGACACGTTCAT 59.703 45.455 0.00 0.00 0.00 2.57
6733 7905 3.409026 ACGAAAGATCAACCTGAAGCT 57.591 42.857 0.00 0.00 0.00 3.74
6741 7913 4.091424 GCATGCAACTACGAAAGATCAAC 58.909 43.478 14.21 0.00 0.00 3.18
6752 7924 1.289109 ACGTCCACGCATGCAACTAC 61.289 55.000 19.57 9.17 44.43 2.73
6769 7941 2.100197 TCAATCTACCAGTCCCTGACG 58.900 52.381 0.00 0.00 37.67 4.35
6780 7960 5.412594 TGCAAACAAGTCAGATCAATCTACC 59.587 40.000 0.00 0.00 34.85 3.18
6995 8179 1.745489 GTCGACAGGGTTCATGGCC 60.745 63.158 11.55 0.00 0.00 5.36
7167 8351 6.472686 AGATCTCTAATTGAACTAAGCGGT 57.527 37.500 0.00 0.00 0.00 5.68
7240 8424 7.557358 ACAATGGAAAGCATGACAGATATAACA 59.443 33.333 0.00 0.00 0.00 2.41
7269 8453 5.393866 ACCAAAGTCCAAATAGAACCACAT 58.606 37.500 0.00 0.00 0.00 3.21
7276 8460 7.827236 ACATAATTCGACCAAAGTCCAAATAGA 59.173 33.333 0.00 0.00 40.12 1.98
7303 8487 6.707608 CCCTAACGGTATATAAAACTTCCCAC 59.292 42.308 0.00 0.00 0.00 4.61
7307 8491 8.200120 AGTCACCCTAACGGTATATAAAACTTC 58.800 37.037 0.00 0.00 46.14 3.01
7322 8506 3.263261 GCTTCTTGCTAGTCACCCTAAC 58.737 50.000 0.00 0.00 38.95 2.34
7357 8546 0.404040 TCACAAATGACACCCCTCCC 59.596 55.000 0.00 0.00 0.00 4.30
7358 8547 1.886542 GTTCACAAATGACACCCCTCC 59.113 52.381 0.00 0.00 33.38 4.30
7370 8559 4.396478 TCTGTCATGAAAACCGTTCACAAA 59.604 37.500 0.00 0.00 0.00 2.83
7380 8569 7.805071 CCTCACAACTAAATCTGTCATGAAAAC 59.195 37.037 0.00 0.00 0.00 2.43
7385 8574 6.401474 CGTTCCTCACAACTAAATCTGTCATG 60.401 42.308 0.00 0.00 0.00 3.07
7386 8575 5.639506 CGTTCCTCACAACTAAATCTGTCAT 59.360 40.000 0.00 0.00 0.00 3.06
7392 8581 7.829378 AACTATCGTTCCTCACAACTAAATC 57.171 36.000 0.00 0.00 0.00 2.17
7393 8582 8.095169 AGAAACTATCGTTCCTCACAACTAAAT 58.905 33.333 0.00 0.00 31.66 1.40
7394 8583 7.439381 AGAAACTATCGTTCCTCACAACTAAA 58.561 34.615 0.00 0.00 31.66 1.85
7395 8584 6.989659 AGAAACTATCGTTCCTCACAACTAA 58.010 36.000 0.00 0.00 31.66 2.24
7396 8585 6.585695 AGAAACTATCGTTCCTCACAACTA 57.414 37.500 0.00 0.00 31.66 2.24
7397 8586 5.470047 AGAAACTATCGTTCCTCACAACT 57.530 39.130 0.00 0.00 31.66 3.16
7398 8587 5.694910 TGAAGAAACTATCGTTCCTCACAAC 59.305 40.000 0.00 0.00 31.66 3.32
7399 8588 5.849510 TGAAGAAACTATCGTTCCTCACAA 58.150 37.500 0.00 0.00 31.66 3.33
7400 8589 5.243060 TCTGAAGAAACTATCGTTCCTCACA 59.757 40.000 0.00 0.00 31.66 3.58
7401 8590 5.573669 GTCTGAAGAAACTATCGTTCCTCAC 59.426 44.000 0.00 0.00 31.66 3.51
7402 8591 5.619309 CGTCTGAAGAAACTATCGTTCCTCA 60.619 44.000 0.00 0.00 31.66 3.86
7403 8592 4.794246 CGTCTGAAGAAACTATCGTTCCTC 59.206 45.833 0.00 0.00 31.66 3.71
7404 8593 4.734917 CGTCTGAAGAAACTATCGTTCCT 58.265 43.478 0.00 0.00 31.66 3.36
7405 8594 3.303760 GCGTCTGAAGAAACTATCGTTCC 59.696 47.826 0.00 0.00 31.66 3.62
7406 8595 3.918591 TGCGTCTGAAGAAACTATCGTTC 59.081 43.478 0.00 0.00 31.66 3.95
7407 8596 3.909430 TGCGTCTGAAGAAACTATCGTT 58.091 40.909 0.00 0.00 34.03 3.85
7408 8597 3.570926 TGCGTCTGAAGAAACTATCGT 57.429 42.857 0.00 0.00 0.00 3.73
7409 8598 3.673338 TGTTGCGTCTGAAGAAACTATCG 59.327 43.478 14.25 0.00 0.00 2.92
7410 8599 5.348724 TCATGTTGCGTCTGAAGAAACTATC 59.651 40.000 14.25 0.00 0.00 2.08
7411 8600 5.237815 TCATGTTGCGTCTGAAGAAACTAT 58.762 37.500 14.25 5.23 0.00 2.12
7412 8601 4.627058 TCATGTTGCGTCTGAAGAAACTA 58.373 39.130 14.25 3.38 0.00 2.24
7413 8602 3.466836 TCATGTTGCGTCTGAAGAAACT 58.533 40.909 14.25 0.00 0.00 2.66
7414 8603 3.248602 ACTCATGTTGCGTCTGAAGAAAC 59.751 43.478 7.42 7.42 0.00 2.78
7415 8604 3.248363 CACTCATGTTGCGTCTGAAGAAA 59.752 43.478 0.00 0.00 0.00 2.52
7416 8605 2.802247 CACTCATGTTGCGTCTGAAGAA 59.198 45.455 0.00 0.00 0.00 2.52
7417 8606 2.224042 ACACTCATGTTGCGTCTGAAGA 60.224 45.455 0.00 0.00 34.46 2.87
7418 8607 2.138320 ACACTCATGTTGCGTCTGAAG 58.862 47.619 0.00 0.00 34.46 3.02
7419 8608 2.238942 ACACTCATGTTGCGTCTGAA 57.761 45.000 0.00 0.00 34.46 3.02
7420 8609 3.986970 ACACTCATGTTGCGTCTGA 57.013 47.368 0.00 0.00 34.46 3.27
7429 8618 2.628178 TCTCTCACGGAAACACTCATGT 59.372 45.455 0.00 0.00 42.46 3.21
7430 8619 3.303881 TCTCTCACGGAAACACTCATG 57.696 47.619 0.00 0.00 0.00 3.07
7431 8620 4.950475 TCTATCTCTCACGGAAACACTCAT 59.050 41.667 0.00 0.00 0.00 2.90
7432 8621 4.156190 GTCTATCTCTCACGGAAACACTCA 59.844 45.833 0.00 0.00 0.00 3.41
7433 8622 4.396790 AGTCTATCTCTCACGGAAACACTC 59.603 45.833 0.00 0.00 0.00 3.51
7434 8623 4.337145 AGTCTATCTCTCACGGAAACACT 58.663 43.478 0.00 0.00 0.00 3.55
7435 8624 4.705337 AGTCTATCTCTCACGGAAACAC 57.295 45.455 0.00 0.00 0.00 3.32
7436 8625 6.829229 TTTAGTCTATCTCTCACGGAAACA 57.171 37.500 0.00 0.00 0.00 2.83
7437 8626 7.273815 CAGTTTTAGTCTATCTCTCACGGAAAC 59.726 40.741 0.00 0.00 0.00 2.78
7438 8627 7.176165 TCAGTTTTAGTCTATCTCTCACGGAAA 59.824 37.037 0.00 0.00 0.00 3.13
7439 8628 6.657966 TCAGTTTTAGTCTATCTCTCACGGAA 59.342 38.462 0.00 0.00 0.00 4.30
7440 8629 6.178324 TCAGTTTTAGTCTATCTCTCACGGA 58.822 40.000 0.00 0.00 0.00 4.69
7441 8630 6.438259 TCAGTTTTAGTCTATCTCTCACGG 57.562 41.667 0.00 0.00 0.00 4.94
7442 8631 5.968848 GCTCAGTTTTAGTCTATCTCTCACG 59.031 44.000 0.00 0.00 0.00 4.35
7443 8632 6.127591 TGGCTCAGTTTTAGTCTATCTCTCAC 60.128 42.308 0.00 0.00 0.00 3.51
7444 8633 5.952347 TGGCTCAGTTTTAGTCTATCTCTCA 59.048 40.000 0.00 0.00 0.00 3.27
7445 8634 6.458232 TGGCTCAGTTTTAGTCTATCTCTC 57.542 41.667 0.00 0.00 0.00 3.20
7446 8635 7.430760 AATGGCTCAGTTTTAGTCTATCTCT 57.569 36.000 0.00 0.00 0.00 3.10
7447 8636 7.011857 CCAAATGGCTCAGTTTTAGTCTATCTC 59.988 40.741 0.00 0.00 0.00 2.75
7448 8637 6.825721 CCAAATGGCTCAGTTTTAGTCTATCT 59.174 38.462 0.00 0.00 0.00 1.98
7449 8638 6.599638 ACCAAATGGCTCAGTTTTAGTCTATC 59.400 38.462 0.00 0.00 39.32 2.08
7450 8639 6.485171 ACCAAATGGCTCAGTTTTAGTCTAT 58.515 36.000 0.00 0.00 39.32 1.98
7451 8640 5.876357 ACCAAATGGCTCAGTTTTAGTCTA 58.124 37.500 0.00 0.00 39.32 2.59
7452 8641 4.729868 ACCAAATGGCTCAGTTTTAGTCT 58.270 39.130 0.00 0.00 39.32 3.24
7453 8642 5.009610 TCAACCAAATGGCTCAGTTTTAGTC 59.990 40.000 0.00 0.00 39.32 2.59
7454 8643 4.892934 TCAACCAAATGGCTCAGTTTTAGT 59.107 37.500 0.00 0.00 39.32 2.24
7455 8644 5.452078 TCAACCAAATGGCTCAGTTTTAG 57.548 39.130 0.00 0.00 39.32 1.85
7456 8645 6.945435 TCTATCAACCAAATGGCTCAGTTTTA 59.055 34.615 0.00 0.00 39.32 1.52
7457 8646 4.961438 ATCAACCAAATGGCTCAGTTTT 57.039 36.364 0.00 0.00 39.32 2.43
7458 8647 5.324409 TCTATCAACCAAATGGCTCAGTTT 58.676 37.500 0.00 0.00 39.32 2.66
7459 8648 4.922206 TCTATCAACCAAATGGCTCAGTT 58.078 39.130 0.00 0.00 39.32 3.16
7460 8649 4.574674 TCTATCAACCAAATGGCTCAGT 57.425 40.909 0.00 0.00 39.32 3.41
7461 8650 5.902613 TTTCTATCAACCAAATGGCTCAG 57.097 39.130 0.00 0.00 39.32 3.35
7462 8651 7.345691 TCTATTTCTATCAACCAAATGGCTCA 58.654 34.615 0.00 0.00 39.32 4.26
7463 8652 7.807977 TCTATTTCTATCAACCAAATGGCTC 57.192 36.000 0.00 0.00 39.32 4.70
7464 8653 8.773033 AATCTATTTCTATCAACCAAATGGCT 57.227 30.769 0.00 0.00 39.32 4.75
7465 8654 8.084684 GGAATCTATTTCTATCAACCAAATGGC 58.915 37.037 0.00 0.00 34.97 4.40
7466 8655 9.359653 AGGAATCTATTTCTATCAACCAAATGG 57.640 33.333 0.00 0.00 36.50 3.16
7496 8685 8.043710 GGAGAATATGAACCAATCCTATGTAGG 58.956 40.741 0.00 0.00 45.02 3.18
7497 8686 8.597167 TGGAGAATATGAACCAATCCTATGTAG 58.403 37.037 0.00 0.00 0.00 2.74
7498 8687 8.375506 GTGGAGAATATGAACCAATCCTATGTA 58.624 37.037 0.00 0.00 34.11 2.29
7499 8688 7.147320 TGTGGAGAATATGAACCAATCCTATGT 60.147 37.037 0.00 0.00 34.11 2.29
7500 8689 7.226441 TGTGGAGAATATGAACCAATCCTATG 58.774 38.462 0.00 0.00 34.11 2.23
7501 8690 7.392766 TGTGGAGAATATGAACCAATCCTAT 57.607 36.000 0.00 0.00 34.11 2.57
7502 8691 6.823286 TGTGGAGAATATGAACCAATCCTA 57.177 37.500 0.00 0.00 34.11 2.94
7503 8692 5.715439 TGTGGAGAATATGAACCAATCCT 57.285 39.130 0.00 0.00 34.11 3.24
7504 8693 6.966534 AATGTGGAGAATATGAACCAATCC 57.033 37.500 0.00 0.00 34.11 3.01
7505 8694 7.999679 TGAAATGTGGAGAATATGAACCAATC 58.000 34.615 0.00 0.00 34.11 2.67
7506 8695 7.959658 TGAAATGTGGAGAATATGAACCAAT 57.040 32.000 0.00 0.00 34.11 3.16
7507 8696 7.773489 TTGAAATGTGGAGAATATGAACCAA 57.227 32.000 0.00 0.00 34.11 3.67
7508 8697 7.093814 CCTTTGAAATGTGGAGAATATGAACCA 60.094 37.037 0.00 0.00 0.00 3.67
7509 8698 7.122650 TCCTTTGAAATGTGGAGAATATGAACC 59.877 37.037 0.00 0.00 0.00 3.62
7510 8699 8.055279 TCCTTTGAAATGTGGAGAATATGAAC 57.945 34.615 0.00 0.00 0.00 3.18
7511 8700 8.648698 TTCCTTTGAAATGTGGAGAATATGAA 57.351 30.769 0.00 0.00 0.00 2.57
7512 8701 8.648698 TTTCCTTTGAAATGTGGAGAATATGA 57.351 30.769 0.00 0.00 35.58 2.15
7513 8702 9.880157 ATTTTCCTTTGAAATGTGGAGAATATG 57.120 29.630 0.00 0.00 40.08 1.78
7524 8713 9.830294 GGCTCAAATTTATTTTCCTTTGAAATG 57.170 29.630 0.00 0.00 40.08 2.32
7525 8714 9.797642 AGGCTCAAATTTATTTTCCTTTGAAAT 57.202 25.926 0.00 0.00 40.08 2.17
7527 8716 9.927668 CTAGGCTCAAATTTATTTTCCTTTGAA 57.072 29.630 0.00 0.00 37.22 2.69
7528 8717 9.308000 TCTAGGCTCAAATTTATTTTCCTTTGA 57.692 29.630 0.00 0.00 36.48 2.69
7529 8718 9.358872 GTCTAGGCTCAAATTTATTTTCCTTTG 57.641 33.333 0.00 0.00 0.00 2.77
7530 8719 9.314133 AGTCTAGGCTCAAATTTATTTTCCTTT 57.686 29.630 0.00 0.00 0.00 3.11
7531 8720 8.885693 AGTCTAGGCTCAAATTTATTTTCCTT 57.114 30.769 0.00 0.00 0.00 3.36
7532 8721 8.109634 TGAGTCTAGGCTCAAATTTATTTTCCT 58.890 33.333 24.54 0.00 41.93 3.36
7533 8722 8.281212 TGAGTCTAGGCTCAAATTTATTTTCC 57.719 34.615 24.54 0.00 41.93 3.13
7534 8723 8.951243 ACTGAGTCTAGGCTCAAATTTATTTTC 58.049 33.333 26.30 0.00 43.92 2.29
7535 8724 8.734386 CACTGAGTCTAGGCTCAAATTTATTTT 58.266 33.333 26.30 1.75 43.92 1.82
7536 8725 8.103305 TCACTGAGTCTAGGCTCAAATTTATTT 58.897 33.333 26.30 2.71 43.92 1.40
7537 8726 7.624549 TCACTGAGTCTAGGCTCAAATTTATT 58.375 34.615 26.30 4.00 43.92 1.40
7538 8727 7.187824 TCACTGAGTCTAGGCTCAAATTTAT 57.812 36.000 26.30 6.76 43.92 1.40
7539 8728 6.605471 TCACTGAGTCTAGGCTCAAATTTA 57.395 37.500 26.30 9.05 43.92 1.40
7540 8729 5.489792 TCACTGAGTCTAGGCTCAAATTT 57.510 39.130 26.30 9.62 43.92 1.82
7541 8730 5.489792 TTCACTGAGTCTAGGCTCAAATT 57.510 39.130 26.30 11.99 43.92 1.82
7542 8731 5.489792 TTTCACTGAGTCTAGGCTCAAAT 57.510 39.130 26.30 15.52 43.92 2.32
7543 8732 4.955811 TTTCACTGAGTCTAGGCTCAAA 57.044 40.909 26.30 15.92 43.92 2.69
7544 8733 4.955811 TTTTCACTGAGTCTAGGCTCAA 57.044 40.909 26.30 10.65 43.92 3.02
7545 8734 4.955811 TTTTTCACTGAGTCTAGGCTCA 57.044 40.909 24.99 24.99 42.56 4.26
7635 8824 7.873719 TGTGAGGTTTGAAGTATGAAAAAGA 57.126 32.000 0.00 0.00 0.00 2.52
7642 8831 7.148239 GGGACTAATTGTGAGGTTTGAAGTATG 60.148 40.741 0.00 0.00 0.00 2.39
7643 8832 6.884836 GGGACTAATTGTGAGGTTTGAAGTAT 59.115 38.462 0.00 0.00 0.00 2.12
7644 8833 6.043938 AGGGACTAATTGTGAGGTTTGAAGTA 59.956 38.462 0.00 0.00 36.02 2.24
7645 8834 5.070685 GGGACTAATTGTGAGGTTTGAAGT 58.929 41.667 0.00 0.00 0.00 3.01
7646 8835 5.316987 AGGGACTAATTGTGAGGTTTGAAG 58.683 41.667 0.00 0.00 36.02 3.02
7648 8837 4.993705 AGGGACTAATTGTGAGGTTTGA 57.006 40.909 0.00 0.00 36.02 2.69
7650 8839 4.041198 TCGAAGGGACTAATTGTGAGGTTT 59.959 41.667 0.00 0.00 38.49 3.27
7651 8840 3.581332 TCGAAGGGACTAATTGTGAGGTT 59.419 43.478 0.00 0.00 38.49 3.50
7652 8841 3.170717 TCGAAGGGACTAATTGTGAGGT 58.829 45.455 0.00 0.00 38.49 3.85
7653 8842 3.887621 TCGAAGGGACTAATTGTGAGG 57.112 47.619 0.00 0.00 38.49 3.86
7654 8843 3.933332 GGTTCGAAGGGACTAATTGTGAG 59.067 47.826 0.00 0.00 38.49 3.51
7655 8844 3.581332 AGGTTCGAAGGGACTAATTGTGA 59.419 43.478 0.00 0.00 38.49 3.58
7656 8845 3.933332 GAGGTTCGAAGGGACTAATTGTG 59.067 47.826 0.00 0.00 38.49 3.33
7657 8846 3.581332 TGAGGTTCGAAGGGACTAATTGT 59.419 43.478 0.00 0.00 38.49 2.71
7658 8847 4.202245 TGAGGTTCGAAGGGACTAATTG 57.798 45.455 0.00 0.00 38.49 2.32
7659 8848 4.903045 TTGAGGTTCGAAGGGACTAATT 57.097 40.909 0.00 0.00 38.49 1.40
7660 8849 4.903045 TTTGAGGTTCGAAGGGACTAAT 57.097 40.909 0.00 0.00 38.49 1.73
7680 8869 5.457686 TCCTGGCAGCTCCATAATATTTTT 58.542 37.500 9.56 0.00 45.50 1.94
7685 8874 3.009473 GGAATCCTGGCAGCTCCATAATA 59.991 47.826 18.37 0.00 45.50 0.98
7687 8876 1.143684 GGAATCCTGGCAGCTCCATAA 59.856 52.381 18.37 0.00 45.50 1.90
7688 8877 0.767375 GGAATCCTGGCAGCTCCATA 59.233 55.000 18.37 0.00 45.50 2.74
7691 8880 1.034292 GTTGGAATCCTGGCAGCTCC 61.034 60.000 9.56 14.39 0.00 4.70
7692 8881 1.034292 GGTTGGAATCCTGGCAGCTC 61.034 60.000 9.56 4.98 0.00 4.09
7694 8883 0.613012 AAGGTTGGAATCCTGGCAGC 60.613 55.000 9.56 0.00 35.27 5.25
7716 8913 2.816411 TGTGAGGGACTAACCTGTAGG 58.184 52.381 0.00 0.00 39.70 3.18
7719 8916 2.404559 TGTTGTGAGGGACTAACCTGT 58.595 47.619 0.00 0.00 39.70 4.00
7721 8918 2.775384 TGTTGTTGTGAGGGACTAACCT 59.225 45.455 0.00 0.00 39.70 3.50
7722 8919 3.202829 TGTTGTTGTGAGGGACTAACC 57.797 47.619 0.00 0.00 39.70 2.85
7723 8920 3.314357 GGTTGTTGTTGTGAGGGACTAAC 59.686 47.826 0.00 0.00 41.55 2.34
7728 8925 2.516227 TTGGTTGTTGTTGTGAGGGA 57.484 45.000 0.00 0.00 0.00 4.20
7729 8926 3.131933 TCAATTGGTTGTTGTTGTGAGGG 59.868 43.478 5.42 0.00 36.69 4.30
7730 8927 4.383850 TCAATTGGTTGTTGTTGTGAGG 57.616 40.909 5.42 0.00 36.69 3.86
7731 8928 5.835257 AGATCAATTGGTTGTTGTTGTGAG 58.165 37.500 5.42 0.00 36.69 3.51
7732 8929 5.850557 AGATCAATTGGTTGTTGTTGTGA 57.149 34.783 5.42 0.00 36.69 3.58
7734 8931 6.707440 TGTAGATCAATTGGTTGTTGTTGT 57.293 33.333 5.42 0.00 36.69 3.32
7736 8933 6.978080 GTGTTGTAGATCAATTGGTTGTTGTT 59.022 34.615 5.42 0.00 38.38 2.83
7740 8937 6.707440 TTGTGTTGTAGATCAATTGGTTGT 57.293 33.333 5.42 0.00 38.38 3.32
7741 8938 7.329226 GGAATTGTGTTGTAGATCAATTGGTTG 59.671 37.037 5.42 0.00 39.52 3.77
7748 8945 5.630121 AGTGGGAATTGTGTTGTAGATCAA 58.370 37.500 0.00 0.00 0.00 2.57
7753 8950 6.878923 TCATCTAAGTGGGAATTGTGTTGTAG 59.121 38.462 0.00 0.00 0.00 2.74
7756 8953 6.349611 CCTTCATCTAAGTGGGAATTGTGTTG 60.350 42.308 0.00 0.00 32.89 3.33
7757 8954 5.711976 CCTTCATCTAAGTGGGAATTGTGTT 59.288 40.000 0.00 0.00 32.89 3.32
7776 8973 6.295349 GGACTCAATAGACTGAAGTTCCTTCA 60.295 42.308 6.51 6.51 46.50 3.02
7777 8974 6.103330 GGACTCAATAGACTGAAGTTCCTTC 58.897 44.000 0.00 0.00 40.54 3.46
7780 8977 4.082136 ACGGACTCAATAGACTGAAGTTCC 60.082 45.833 0.00 0.00 0.00 3.62
7786 8983 3.192844 GTGGAACGGACTCAATAGACTGA 59.807 47.826 0.00 0.00 0.00 3.41
7787 8984 3.512680 GTGGAACGGACTCAATAGACTG 58.487 50.000 0.00 0.00 0.00 3.51
7790 8987 1.829222 GGGTGGAACGGACTCAATAGA 59.171 52.381 0.00 0.00 38.12 1.98
8029 9236 9.656040 TTCATGAACATGCTTTTAATTTGCTAT 57.344 25.926 3.38 0.00 38.65 2.97
8031 9238 7.966246 TTCATGAACATGCTTTTAATTTGCT 57.034 28.000 3.38 0.00 38.65 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.