Multiple sequence alignment - TraesCS4B01G297100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G297100 chr4B 100.000 2570 0 0 1 2570 582571187 582573756 0.000000e+00 4747.0
1 TraesCS4B01G297100 chr4D 86.934 1944 101 65 668 2570 465618673 465620504 0.000000e+00 2041.0
2 TraesCS4B01G297100 chr4A 80.283 1836 156 99 866 2570 4834384 4832624 0.000000e+00 1195.0
3 TraesCS4B01G297100 chr4A 82.927 123 3 3 668 789 4834816 4834711 7.570000e-16 95.3
4 TraesCS4B01G297100 chr4A 92.593 54 3 1 474 527 4835168 4835116 2.740000e-10 76.8
5 TraesCS4B01G297100 chr6B 97.248 109 3 0 524 632 603241441 603241333 4.370000e-43 185.0
6 TraesCS4B01G297100 chr7B 98.095 105 2 0 526 630 97964046 97964150 1.570000e-42 183.0
7 TraesCS4B01G297100 chr5A 98.095 105 2 0 526 630 708080954 708080850 1.570000e-42 183.0
8 TraesCS4B01G297100 chr2B 94.167 120 7 0 520 639 767411298 767411179 1.570000e-42 183.0
9 TraesCS4B01G297100 chr7A 94.167 120 5 2 524 642 652233753 652233635 5.650000e-42 182.0
10 TraesCS4B01G297100 chr3A 97.222 108 2 1 527 633 627706985 627707092 5.650000e-42 182.0
11 TraesCS4B01G297100 chr3A 100.000 30 0 0 1498 1527 557004036 557004007 3.570000e-04 56.5
12 TraesCS4B01G297100 chr1B 97.196 107 3 0 527 633 43956798 43956904 5.650000e-42 182.0
13 TraesCS4B01G297100 chr1B 98.077 104 2 0 527 630 409674000 409673897 5.650000e-42 182.0
14 TraesCS4B01G297100 chr6A 96.330 109 4 0 522 630 90213119 90213011 2.030000e-41 180.0
15 TraesCS4B01G297100 chr3B 89.333 75 6 1 2 74 671264338 671264264 2.720000e-15 93.5
16 TraesCS4B01G297100 chr2A 88.679 53 6 0 2 54 651079317 651079265 5.940000e-07 65.8
17 TraesCS4B01G297100 chr5D 96.970 33 1 0 437 469 398488484 398488452 3.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G297100 chr4B 582571187 582573756 2569 False 4747.0 4747 100.000000 1 2570 1 chr4B.!!$F1 2569
1 TraesCS4B01G297100 chr4D 465618673 465620504 1831 False 2041.0 2041 86.934000 668 2570 1 chr4D.!!$F1 1902
2 TraesCS4B01G297100 chr4A 4832624 4835168 2544 True 455.7 1195 85.267667 474 2570 3 chr4A.!!$R1 2096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 530 0.034059 AAGCTCACTGGTTCACGGAG 59.966 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 3204 0.25077 AAGCAACCGGTTCCTTCCTC 60.251 55.0 18.04 1.56 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.782475 GTTGATGACAACGTAATTTGCG 57.218 40.909 5.30 5.30 45.06 4.85
28 29 3.463533 TGATGACAACGTAATTTGCGG 57.536 42.857 11.52 0.00 0.00 5.69
29 30 3.067833 TGATGACAACGTAATTTGCGGA 58.932 40.909 11.52 0.00 0.00 5.54
30 31 2.953640 TGACAACGTAATTTGCGGAC 57.046 45.000 11.52 1.09 0.00 4.79
31 32 2.485903 TGACAACGTAATTTGCGGACT 58.514 42.857 11.52 0.00 0.00 3.85
32 33 2.222213 TGACAACGTAATTTGCGGACTG 59.778 45.455 11.52 7.80 0.00 3.51
33 34 2.477375 GACAACGTAATTTGCGGACTGA 59.523 45.455 11.52 0.00 0.00 3.41
34 35 2.222445 ACAACGTAATTTGCGGACTGAC 59.778 45.455 11.52 0.00 0.00 3.51
35 36 1.435577 ACGTAATTTGCGGACTGACC 58.564 50.000 11.52 0.00 0.00 4.02
45 46 3.980583 GGACTGACCGTGTTCTTGA 57.019 52.632 0.00 0.00 0.00 3.02
46 47 1.784525 GGACTGACCGTGTTCTTGAG 58.215 55.000 0.00 0.00 0.00 3.02
47 48 1.140816 GACTGACCGTGTTCTTGAGC 58.859 55.000 0.00 0.00 0.00 4.26
48 49 0.753262 ACTGACCGTGTTCTTGAGCT 59.247 50.000 0.00 0.00 0.00 4.09
49 50 1.961394 ACTGACCGTGTTCTTGAGCTA 59.039 47.619 0.00 0.00 0.00 3.32
50 51 2.288273 ACTGACCGTGTTCTTGAGCTAC 60.288 50.000 0.00 0.00 0.00 3.58
51 52 1.684450 TGACCGTGTTCTTGAGCTACA 59.316 47.619 0.00 0.00 0.00 2.74
52 53 2.059541 GACCGTGTTCTTGAGCTACAC 58.940 52.381 6.63 6.63 38.96 2.90
53 54 1.411246 ACCGTGTTCTTGAGCTACACA 59.589 47.619 15.16 0.00 41.64 3.72
54 55 2.061773 CCGTGTTCTTGAGCTACACAG 58.938 52.381 15.16 8.73 41.64 3.66
55 56 2.061773 CGTGTTCTTGAGCTACACAGG 58.938 52.381 15.16 3.80 41.64 4.00
56 57 1.801178 GTGTTCTTGAGCTACACAGGC 59.199 52.381 11.06 0.00 41.30 4.85
57 58 1.416030 TGTTCTTGAGCTACACAGGCA 59.584 47.619 0.00 0.00 0.00 4.75
58 59 2.038952 TGTTCTTGAGCTACACAGGCAT 59.961 45.455 0.00 0.00 0.00 4.40
59 60 3.260632 TGTTCTTGAGCTACACAGGCATA 59.739 43.478 0.00 0.00 0.00 3.14
60 61 4.080919 TGTTCTTGAGCTACACAGGCATAT 60.081 41.667 0.00 0.00 0.00 1.78
61 62 4.760530 TCTTGAGCTACACAGGCATATT 57.239 40.909 0.00 0.00 0.00 1.28
62 63 4.697514 TCTTGAGCTACACAGGCATATTC 58.302 43.478 0.00 0.00 0.00 1.75
63 64 4.162131 TCTTGAGCTACACAGGCATATTCA 59.838 41.667 0.00 0.00 0.00 2.57
64 65 4.486125 TGAGCTACACAGGCATATTCAA 57.514 40.909 0.00 0.00 0.00 2.69
65 66 4.842574 TGAGCTACACAGGCATATTCAAA 58.157 39.130 0.00 0.00 0.00 2.69
66 67 5.439721 TGAGCTACACAGGCATATTCAAAT 58.560 37.500 0.00 0.00 0.00 2.32
67 68 5.297527 TGAGCTACACAGGCATATTCAAATG 59.702 40.000 0.00 0.00 0.00 2.32
68 69 5.439721 AGCTACACAGGCATATTCAAATGA 58.560 37.500 0.00 0.00 0.00 2.57
69 70 5.297776 AGCTACACAGGCATATTCAAATGAC 59.702 40.000 0.00 0.00 34.88 3.06
70 71 5.066375 GCTACACAGGCATATTCAAATGACA 59.934 40.000 0.00 0.00 37.35 3.58
71 72 5.314923 ACACAGGCATATTCAAATGACAC 57.685 39.130 0.00 0.00 37.35 3.67
72 73 4.766373 ACACAGGCATATTCAAATGACACA 59.234 37.500 0.00 0.00 37.35 3.72
73 74 5.243507 ACACAGGCATATTCAAATGACACAA 59.756 36.000 0.00 0.00 37.35 3.33
74 75 5.574055 CACAGGCATATTCAAATGACACAAC 59.426 40.000 0.00 0.00 37.35 3.32
75 76 5.104374 CAGGCATATTCAAATGACACAACC 58.896 41.667 0.00 0.00 37.35 3.77
76 77 4.160252 AGGCATATTCAAATGACACAACCC 59.840 41.667 0.00 0.00 37.35 4.11
77 78 4.160252 GGCATATTCAAATGACACAACCCT 59.840 41.667 0.00 0.00 34.79 4.34
78 79 5.343249 GCATATTCAAATGACACAACCCTC 58.657 41.667 0.00 0.00 0.00 4.30
79 80 5.126061 GCATATTCAAATGACACAACCCTCT 59.874 40.000 0.00 0.00 0.00 3.69
80 81 6.350445 GCATATTCAAATGACACAACCCTCTT 60.350 38.462 0.00 0.00 0.00 2.85
81 82 4.916983 TTCAAATGACACAACCCTCTTG 57.083 40.909 0.00 0.00 0.00 3.02
82 83 2.622942 TCAAATGACACAACCCTCTTGC 59.377 45.455 0.00 0.00 0.00 4.01
83 84 2.624838 CAAATGACACAACCCTCTTGCT 59.375 45.455 0.00 0.00 0.00 3.91
84 85 2.191128 ATGACACAACCCTCTTGCTC 57.809 50.000 0.00 0.00 0.00 4.26
85 86 0.249868 TGACACAACCCTCTTGCTCG 60.250 55.000 0.00 0.00 0.00 5.03
86 87 1.569479 GACACAACCCTCTTGCTCGC 61.569 60.000 0.00 0.00 0.00 5.03
87 88 2.032681 ACAACCCTCTTGCTCGCC 59.967 61.111 0.00 0.00 0.00 5.54
88 89 2.032528 CAACCCTCTTGCTCGCCA 59.967 61.111 0.00 0.00 0.00 5.69
89 90 1.600636 CAACCCTCTTGCTCGCCAA 60.601 57.895 0.00 0.00 0.00 4.52
90 91 1.600916 AACCCTCTTGCTCGCCAAC 60.601 57.895 0.00 0.00 0.00 3.77
91 92 2.032528 CCCTCTTGCTCGCCAACA 59.967 61.111 0.00 0.00 0.00 3.33
92 93 1.377725 CCCTCTTGCTCGCCAACAT 60.378 57.895 0.00 0.00 0.00 2.71
93 94 0.962356 CCCTCTTGCTCGCCAACATT 60.962 55.000 0.00 0.00 0.00 2.71
94 95 0.883833 CCTCTTGCTCGCCAACATTT 59.116 50.000 0.00 0.00 0.00 2.32
95 96 2.083774 CCTCTTGCTCGCCAACATTTA 58.916 47.619 0.00 0.00 0.00 1.40
96 97 2.684881 CCTCTTGCTCGCCAACATTTAT 59.315 45.455 0.00 0.00 0.00 1.40
97 98 3.129287 CCTCTTGCTCGCCAACATTTATT 59.871 43.478 0.00 0.00 0.00 1.40
98 99 4.380867 CCTCTTGCTCGCCAACATTTATTT 60.381 41.667 0.00 0.00 0.00 1.40
99 100 5.132897 TCTTGCTCGCCAACATTTATTTT 57.867 34.783 0.00 0.00 0.00 1.82
100 101 5.160641 TCTTGCTCGCCAACATTTATTTTC 58.839 37.500 0.00 0.00 0.00 2.29
101 102 4.782019 TGCTCGCCAACATTTATTTTCT 57.218 36.364 0.00 0.00 0.00 2.52
102 103 5.132897 TGCTCGCCAACATTTATTTTCTT 57.867 34.783 0.00 0.00 0.00 2.52
103 104 5.537188 TGCTCGCCAACATTTATTTTCTTT 58.463 33.333 0.00 0.00 0.00 2.52
104 105 5.988561 TGCTCGCCAACATTTATTTTCTTTT 59.011 32.000 0.00 0.00 0.00 2.27
105 106 6.481644 TGCTCGCCAACATTTATTTTCTTTTT 59.518 30.769 0.00 0.00 0.00 1.94
134 135 1.209127 GGCACCACCGTTTCATTCG 59.791 57.895 0.00 0.00 0.00 3.34
135 136 1.231958 GGCACCACCGTTTCATTCGA 61.232 55.000 0.00 0.00 0.00 3.71
136 137 0.165944 GCACCACCGTTTCATTCGAG 59.834 55.000 0.00 0.00 0.00 4.04
137 138 0.796312 CACCACCGTTTCATTCGAGG 59.204 55.000 0.00 0.00 0.00 4.63
138 139 0.395312 ACCACCGTTTCATTCGAGGT 59.605 50.000 0.00 0.00 34.00 3.85
139 140 1.076332 CCACCGTTTCATTCGAGGTC 58.924 55.000 0.00 0.00 32.04 3.85
140 141 1.606994 CCACCGTTTCATTCGAGGTCA 60.607 52.381 0.00 0.00 32.04 4.02
141 142 2.346803 CACCGTTTCATTCGAGGTCAT 58.653 47.619 0.00 0.00 32.04 3.06
142 143 2.742053 CACCGTTTCATTCGAGGTCATT 59.258 45.455 0.00 0.00 32.04 2.57
143 144 3.000727 ACCGTTTCATTCGAGGTCATTC 58.999 45.455 0.00 0.00 0.00 2.67
144 145 2.351726 CCGTTTCATTCGAGGTCATTCC 59.648 50.000 0.00 0.00 0.00 3.01
145 146 3.000041 CGTTTCATTCGAGGTCATTCCA 59.000 45.455 0.00 0.00 39.02 3.53
146 147 3.623060 CGTTTCATTCGAGGTCATTCCAT 59.377 43.478 0.00 0.00 39.02 3.41
147 148 4.260375 CGTTTCATTCGAGGTCATTCCATC 60.260 45.833 0.00 0.00 39.02 3.51
148 149 3.097877 TCATTCGAGGTCATTCCATCG 57.902 47.619 0.00 0.00 39.02 3.84
149 150 1.528586 CATTCGAGGTCATTCCATCGC 59.471 52.381 0.00 0.00 37.05 4.58
150 151 0.179084 TTCGAGGTCATTCCATCGCC 60.179 55.000 0.00 0.00 37.05 5.54
151 152 1.043116 TCGAGGTCATTCCATCGCCT 61.043 55.000 0.00 0.00 37.05 5.52
152 153 0.877649 CGAGGTCATTCCATCGCCTG 60.878 60.000 0.00 0.00 39.02 4.85
153 154 1.153086 AGGTCATTCCATCGCCTGC 60.153 57.895 0.00 0.00 39.02 4.85
154 155 1.153086 GGTCATTCCATCGCCTGCT 60.153 57.895 0.00 0.00 35.97 4.24
155 156 1.442526 GGTCATTCCATCGCCTGCTG 61.443 60.000 0.00 0.00 35.97 4.41
156 157 1.820906 TCATTCCATCGCCTGCTGC 60.821 57.895 0.00 0.00 0.00 5.25
157 158 2.517875 ATTCCATCGCCTGCTGCC 60.518 61.111 0.00 0.00 36.24 4.85
158 159 3.348554 ATTCCATCGCCTGCTGCCA 62.349 57.895 0.00 0.00 36.24 4.92
159 160 2.635787 ATTCCATCGCCTGCTGCCAT 62.636 55.000 0.00 0.00 36.24 4.40
160 161 2.831742 CCATCGCCTGCTGCCATT 60.832 61.111 0.00 0.00 36.24 3.16
161 162 2.420568 CCATCGCCTGCTGCCATTT 61.421 57.895 0.00 0.00 36.24 2.32
162 163 1.226859 CATCGCCTGCTGCCATTTG 60.227 57.895 0.00 0.00 36.24 2.32
163 164 3.072486 ATCGCCTGCTGCCATTTGC 62.072 57.895 0.00 0.00 41.77 3.68
165 166 4.060038 GCCTGCTGCCATTTGCGT 62.060 61.111 0.00 0.00 45.60 5.24
166 167 2.126228 CCTGCTGCCATTTGCGTG 60.126 61.111 0.00 0.00 45.60 5.34
167 168 2.628696 CCTGCTGCCATTTGCGTGA 61.629 57.895 0.00 0.00 45.60 4.35
168 169 1.154093 CTGCTGCCATTTGCGTGAG 60.154 57.895 0.00 0.00 45.60 3.51
169 170 2.180017 GCTGCCATTTGCGTGAGG 59.820 61.111 0.00 0.00 45.60 3.86
170 171 2.334946 GCTGCCATTTGCGTGAGGA 61.335 57.895 0.00 0.00 45.60 3.71
171 172 1.798735 CTGCCATTTGCGTGAGGAG 59.201 57.895 0.00 0.00 45.60 3.69
172 173 0.957395 CTGCCATTTGCGTGAGGAGT 60.957 55.000 0.00 0.00 45.60 3.85
173 174 1.236616 TGCCATTTGCGTGAGGAGTG 61.237 55.000 0.00 0.00 45.60 3.51
174 175 1.926511 GCCATTTGCGTGAGGAGTGG 61.927 60.000 0.00 0.00 40.35 4.00
175 176 1.503542 CATTTGCGTGAGGAGTGGC 59.496 57.895 0.00 0.00 0.00 5.01
176 177 0.957395 CATTTGCGTGAGGAGTGGCT 60.957 55.000 0.00 0.00 0.00 4.75
177 178 0.674895 ATTTGCGTGAGGAGTGGCTC 60.675 55.000 0.00 0.00 0.00 4.70
178 179 3.573772 TTGCGTGAGGAGTGGCTCG 62.574 63.158 0.00 0.00 0.00 5.03
179 180 3.749064 GCGTGAGGAGTGGCTCGA 61.749 66.667 0.00 0.00 0.00 4.04
180 181 2.179517 CGTGAGGAGTGGCTCGAC 59.820 66.667 0.00 0.00 0.00 4.20
181 182 2.626780 CGTGAGGAGTGGCTCGACA 61.627 63.158 0.00 0.00 0.00 4.35
182 183 1.666011 GTGAGGAGTGGCTCGACAA 59.334 57.895 0.00 0.00 0.00 3.18
183 184 0.667792 GTGAGGAGTGGCTCGACAAC 60.668 60.000 0.00 0.00 0.00 3.32
184 185 1.112916 TGAGGAGTGGCTCGACAACA 61.113 55.000 0.00 0.00 0.00 3.33
185 186 0.247736 GAGGAGTGGCTCGACAACAT 59.752 55.000 0.00 0.00 0.00 2.71
186 187 0.036952 AGGAGTGGCTCGACAACATG 60.037 55.000 0.00 0.00 0.00 3.21
187 188 1.021390 GGAGTGGCTCGACAACATGG 61.021 60.000 0.00 0.00 0.00 3.66
188 189 1.639298 GAGTGGCTCGACAACATGGC 61.639 60.000 0.00 0.00 0.00 4.40
195 196 4.319133 GACAACATGGCGGTGGAT 57.681 55.556 0.00 0.00 0.00 3.41
196 197 1.802636 GACAACATGGCGGTGGATG 59.197 57.895 0.00 0.00 0.00 3.51
197 198 1.656818 GACAACATGGCGGTGGATGG 61.657 60.000 0.00 0.00 0.00 3.51
198 199 2.044053 AACATGGCGGTGGATGGG 60.044 61.111 0.00 0.00 0.00 4.00
199 200 2.611505 AACATGGCGGTGGATGGGA 61.612 57.895 0.00 0.00 0.00 4.37
200 201 2.516930 CATGGCGGTGGATGGGAC 60.517 66.667 0.00 0.00 0.00 4.46
201 202 4.175337 ATGGCGGTGGATGGGACG 62.175 66.667 0.00 0.00 0.00 4.79
203 204 4.090588 GGCGGTGGATGGGACGAA 62.091 66.667 0.00 0.00 0.00 3.85
204 205 2.189521 GCGGTGGATGGGACGAAT 59.810 61.111 0.00 0.00 0.00 3.34
205 206 1.887707 GCGGTGGATGGGACGAATC 60.888 63.158 0.00 0.00 0.00 2.52
206 207 1.591594 CGGTGGATGGGACGAATCG 60.592 63.158 0.00 0.00 0.00 3.34
207 208 1.820581 GGTGGATGGGACGAATCGA 59.179 57.895 10.55 0.00 0.00 3.59
208 209 0.529992 GGTGGATGGGACGAATCGAC 60.530 60.000 10.55 2.33 33.45 4.20
209 210 0.460311 GTGGATGGGACGAATCGACT 59.540 55.000 10.55 0.00 32.03 4.18
210 211 1.679680 GTGGATGGGACGAATCGACTA 59.320 52.381 10.55 0.00 32.03 2.59
211 212 2.296471 GTGGATGGGACGAATCGACTAT 59.704 50.000 10.55 5.15 32.03 2.12
212 213 2.557056 TGGATGGGACGAATCGACTATC 59.443 50.000 10.55 13.69 0.00 2.08
213 214 2.557056 GGATGGGACGAATCGACTATCA 59.443 50.000 21.03 11.96 31.78 2.15
214 215 3.566523 GATGGGACGAATCGACTATCAC 58.433 50.000 10.55 0.00 31.11 3.06
215 216 2.371306 TGGGACGAATCGACTATCACA 58.629 47.619 10.55 0.00 0.00 3.58
216 217 2.956333 TGGGACGAATCGACTATCACAT 59.044 45.455 10.55 0.00 0.00 3.21
217 218 3.243401 TGGGACGAATCGACTATCACATG 60.243 47.826 10.55 0.00 0.00 3.21
218 219 2.726760 GGACGAATCGACTATCACATGC 59.273 50.000 10.55 0.00 0.00 4.06
219 220 3.551046 GGACGAATCGACTATCACATGCT 60.551 47.826 10.55 0.00 0.00 3.79
220 221 3.633235 ACGAATCGACTATCACATGCTC 58.367 45.455 10.55 0.00 0.00 4.26
221 222 3.316588 ACGAATCGACTATCACATGCTCT 59.683 43.478 10.55 0.00 0.00 4.09
222 223 3.911365 CGAATCGACTATCACATGCTCTC 59.089 47.826 0.00 0.00 0.00 3.20
223 224 3.932545 ATCGACTATCACATGCTCTCC 57.067 47.619 0.00 0.00 0.00 3.71
224 225 1.604278 TCGACTATCACATGCTCTCCG 59.396 52.381 0.00 0.00 0.00 4.63
225 226 1.335182 CGACTATCACATGCTCTCCGT 59.665 52.381 0.00 0.00 0.00 4.69
226 227 2.548480 CGACTATCACATGCTCTCCGTA 59.452 50.000 0.00 0.00 0.00 4.02
227 228 3.189495 CGACTATCACATGCTCTCCGTAT 59.811 47.826 0.00 0.00 0.00 3.06
228 229 4.480541 GACTATCACATGCTCTCCGTATG 58.519 47.826 0.00 0.00 40.99 2.39
229 230 4.145052 ACTATCACATGCTCTCCGTATGA 58.855 43.478 0.00 0.00 37.88 2.15
230 231 2.871182 TCACATGCTCTCCGTATGAC 57.129 50.000 0.00 0.00 37.88 3.06
231 232 2.099405 TCACATGCTCTCCGTATGACA 58.901 47.619 0.00 0.00 37.88 3.58
232 233 2.099756 TCACATGCTCTCCGTATGACAG 59.900 50.000 0.00 0.00 37.88 3.51
233 234 2.099756 CACATGCTCTCCGTATGACAGA 59.900 50.000 0.00 0.00 37.88 3.41
234 235 2.099921 ACATGCTCTCCGTATGACAGAC 59.900 50.000 0.00 0.00 37.88 3.51
235 236 0.733150 TGCTCTCCGTATGACAGACG 59.267 55.000 15.47 15.47 40.02 4.18
240 241 2.106332 CGTATGACAGACGGGGCC 59.894 66.667 14.66 0.00 36.66 5.80
241 242 2.504519 GTATGACAGACGGGGCCC 59.495 66.667 15.76 15.76 0.00 5.80
242 243 2.039787 TATGACAGACGGGGCCCA 59.960 61.111 26.86 0.00 0.00 5.36
243 244 2.363975 TATGACAGACGGGGCCCAC 61.364 63.158 26.86 16.05 0.00 4.61
244 245 2.815684 TATGACAGACGGGGCCCACT 62.816 60.000 26.86 18.22 0.00 4.00
245 246 3.637273 GACAGACGGGGCCCACTT 61.637 66.667 26.86 6.38 0.00 3.16
246 247 3.901797 GACAGACGGGGCCCACTTG 62.902 68.421 26.86 18.56 0.00 3.16
247 248 3.953775 CAGACGGGGCCCACTTGT 61.954 66.667 26.86 16.28 0.00 3.16
248 249 3.637273 AGACGGGGCCCACTTGTC 61.637 66.667 26.86 23.58 0.00 3.18
249 250 3.948719 GACGGGGCCCACTTGTCA 61.949 66.667 26.86 0.00 0.00 3.58
250 251 3.901797 GACGGGGCCCACTTGTCAG 62.902 68.421 26.86 5.76 0.00 3.51
252 253 4.284550 GGGGCCCACTTGTCAGCA 62.285 66.667 26.86 0.00 0.00 4.41
253 254 2.203480 GGGCCCACTTGTCAGCAA 60.203 61.111 19.95 0.00 0.00 3.91
254 255 1.832167 GGGCCCACTTGTCAGCAAA 60.832 57.895 19.95 0.00 33.73 3.68
255 256 1.662044 GGCCCACTTGTCAGCAAAG 59.338 57.895 0.00 0.00 33.73 2.77
256 257 1.006922 GCCCACTTGTCAGCAAAGC 60.007 57.895 0.00 0.00 33.73 3.51
257 258 1.737355 GCCCACTTGTCAGCAAAGCA 61.737 55.000 0.00 0.00 33.73 3.91
258 259 0.746063 CCCACTTGTCAGCAAAGCAA 59.254 50.000 0.00 0.00 33.73 3.91
259 260 1.136695 CCCACTTGTCAGCAAAGCAAA 59.863 47.619 0.00 0.00 33.73 3.68
260 261 2.195922 CCACTTGTCAGCAAAGCAAAC 58.804 47.619 0.00 0.00 33.73 2.93
261 262 2.417107 CCACTTGTCAGCAAAGCAAACA 60.417 45.455 0.00 0.00 33.73 2.83
262 263 2.855963 CACTTGTCAGCAAAGCAAACAG 59.144 45.455 0.00 0.00 33.73 3.16
263 264 2.754552 ACTTGTCAGCAAAGCAAACAGA 59.245 40.909 0.00 0.00 33.73 3.41
264 265 2.849880 TGTCAGCAAAGCAAACAGAC 57.150 45.000 0.00 0.00 0.00 3.51
265 266 2.090760 TGTCAGCAAAGCAAACAGACA 58.909 42.857 0.00 0.00 32.70 3.41
266 267 2.689471 TGTCAGCAAAGCAAACAGACAT 59.311 40.909 0.00 0.00 30.43 3.06
267 268 3.882288 TGTCAGCAAAGCAAACAGACATA 59.118 39.130 0.00 0.00 30.43 2.29
268 269 4.337836 TGTCAGCAAAGCAAACAGACATAA 59.662 37.500 0.00 0.00 30.43 1.90
269 270 5.163571 TGTCAGCAAAGCAAACAGACATAAA 60.164 36.000 0.00 0.00 30.43 1.40
270 271 5.748152 GTCAGCAAAGCAAACAGACATAAAA 59.252 36.000 0.00 0.00 0.00 1.52
271 272 6.255453 GTCAGCAAAGCAAACAGACATAAAAA 59.745 34.615 0.00 0.00 0.00 1.94
297 298 8.696043 AACATATATATCCATGTTTGCACAGT 57.304 30.769 7.70 0.00 41.43 3.55
298 299 8.696043 ACATATATATCCATGTTTGCACAGTT 57.304 30.769 0.00 0.00 35.94 3.16
299 300 9.135189 ACATATATATCCATGTTTGCACAGTTT 57.865 29.630 0.00 0.00 35.94 2.66
300 301 9.970395 CATATATATCCATGTTTGCACAGTTTT 57.030 29.630 0.00 0.00 35.94 2.43
324 325 7.761038 TTTTTCCCTTAATTCTGAAGGAGTC 57.239 36.000 7.01 0.00 45.52 3.36
325 326 4.737855 TCCCTTAATTCTGAAGGAGTCG 57.262 45.455 7.01 0.00 45.52 4.18
326 327 3.118738 TCCCTTAATTCTGAAGGAGTCGC 60.119 47.826 7.01 0.00 45.52 5.19
327 328 3.118592 CCCTTAATTCTGAAGGAGTCGCT 60.119 47.826 7.01 0.00 45.52 4.93
328 329 4.099573 CCCTTAATTCTGAAGGAGTCGCTA 59.900 45.833 7.01 0.00 45.52 4.26
329 330 5.221541 CCCTTAATTCTGAAGGAGTCGCTAT 60.222 44.000 7.01 0.00 45.52 2.97
330 331 6.015350 CCCTTAATTCTGAAGGAGTCGCTATA 60.015 42.308 7.01 0.00 45.52 1.31
331 332 7.310113 CCCTTAATTCTGAAGGAGTCGCTATAT 60.310 40.741 7.01 0.00 45.52 0.86
332 333 7.543868 CCTTAATTCTGAAGGAGTCGCTATATG 59.456 40.741 0.00 0.00 45.52 1.78
333 334 6.412362 AATTCTGAAGGAGTCGCTATATGT 57.588 37.500 0.00 0.00 0.00 2.29
334 335 5.854010 TTCTGAAGGAGTCGCTATATGTT 57.146 39.130 0.00 0.00 0.00 2.71
335 336 5.854010 TCTGAAGGAGTCGCTATATGTTT 57.146 39.130 0.00 0.00 0.00 2.83
336 337 5.592054 TCTGAAGGAGTCGCTATATGTTTG 58.408 41.667 0.00 0.00 0.00 2.93
337 338 4.119862 TGAAGGAGTCGCTATATGTTTGC 58.880 43.478 0.00 0.00 0.00 3.68
338 339 3.819564 AGGAGTCGCTATATGTTTGCA 57.180 42.857 0.00 0.00 0.00 4.08
339 340 4.137116 AGGAGTCGCTATATGTTTGCAA 57.863 40.909 0.00 0.00 0.00 4.08
340 341 4.513442 AGGAGTCGCTATATGTTTGCAAA 58.487 39.130 8.05 8.05 0.00 3.68
341 342 4.332819 AGGAGTCGCTATATGTTTGCAAAC 59.667 41.667 30.95 30.95 39.33 2.93
342 343 4.495844 GGAGTCGCTATATGTTTGCAAACC 60.496 45.833 33.33 18.79 38.11 3.27
343 344 3.063452 AGTCGCTATATGTTTGCAAACCG 59.937 43.478 33.33 27.32 38.11 4.44
344 345 2.108700 CGCTATATGTTTGCAAACCGC 58.891 47.619 33.33 25.06 38.11 5.68
345 346 2.108700 GCTATATGTTTGCAAACCGCG 58.891 47.619 33.33 19.93 46.97 6.46
346 347 2.108700 CTATATGTTTGCAAACCGCGC 58.891 47.619 33.33 13.85 46.97 6.86
347 348 0.242286 ATATGTTTGCAAACCGCGCA 59.758 45.000 33.33 18.72 46.97 6.09
348 349 0.661780 TATGTTTGCAAACCGCGCAC 60.662 50.000 33.33 13.30 46.97 5.34
349 350 3.677340 GTTTGCAAACCGCGCACG 61.677 61.111 28.29 0.00 46.97 5.34
366 367 4.210304 GCACGAGCGCATCCGTTC 62.210 66.667 17.41 10.89 40.68 3.95
370 371 3.706140 GAGCGCATCCGTTCGAAT 58.294 55.556 11.47 0.00 35.08 3.34
371 372 1.273887 GAGCGCATCCGTTCGAATG 59.726 57.895 11.47 10.53 35.08 2.67
372 373 1.145759 GAGCGCATCCGTTCGAATGA 61.146 55.000 18.97 10.61 35.08 2.57
373 374 0.530650 AGCGCATCCGTTCGAATGAT 60.531 50.000 18.97 12.42 36.67 2.45
374 375 0.383491 GCGCATCCGTTCGAATGATG 60.383 55.000 24.91 24.91 39.07 3.07
376 377 3.715839 CATCCGTTCGAATGATGCG 57.284 52.632 18.97 8.48 30.53 4.73
377 378 0.383491 CATCCGTTCGAATGATGCGC 60.383 55.000 18.97 0.00 30.53 6.09
378 379 1.498865 ATCCGTTCGAATGATGCGCC 61.499 55.000 18.97 0.00 0.00 6.53
379 380 2.324477 CGTTCGAATGATGCGCCC 59.676 61.111 12.13 0.00 0.00 6.13
380 381 2.173669 CGTTCGAATGATGCGCCCT 61.174 57.895 12.13 0.00 0.00 5.19
381 382 1.643832 GTTCGAATGATGCGCCCTC 59.356 57.895 4.18 1.89 0.00 4.30
382 383 0.811616 GTTCGAATGATGCGCCCTCT 60.812 55.000 4.18 0.00 0.00 3.69
383 384 0.107703 TTCGAATGATGCGCCCTCTT 60.108 50.000 4.18 0.00 0.00 2.85
384 385 0.530650 TCGAATGATGCGCCCTCTTC 60.531 55.000 4.18 2.24 0.00 2.87
385 386 0.531532 CGAATGATGCGCCCTCTTCT 60.532 55.000 4.18 0.00 0.00 2.85
386 387 0.942962 GAATGATGCGCCCTCTTCTG 59.057 55.000 4.18 0.00 0.00 3.02
387 388 0.465097 AATGATGCGCCCTCTTCTGG 60.465 55.000 4.18 0.00 0.00 3.86
388 389 2.899339 GATGCGCCCTCTTCTGGC 60.899 66.667 4.18 0.00 45.70 4.85
394 395 2.045536 CCCTCTTCTGGCACCAGC 60.046 66.667 12.03 0.00 43.31 4.85
395 396 2.600729 CCCTCTTCTGGCACCAGCT 61.601 63.158 12.03 0.00 43.31 4.24
396 397 1.376942 CCTCTTCTGGCACCAGCTG 60.377 63.158 12.03 6.78 43.31 4.24
397 398 1.376942 CTCTTCTGGCACCAGCTGG 60.377 63.158 31.60 31.60 43.31 4.85
398 399 3.060615 CTTCTGGCACCAGCTGGC 61.061 66.667 33.06 19.28 45.98 4.85
399 400 3.564345 CTTCTGGCACCAGCTGGCT 62.564 63.158 33.06 16.98 45.96 4.75
400 401 3.855503 TTCTGGCACCAGCTGGCTG 62.856 63.158 33.06 27.22 45.96 4.85
401 402 4.655647 CTGGCACCAGCTGGCTGT 62.656 66.667 33.06 11.05 45.96 4.40
402 403 3.248418 TGGCACCAGCTGGCTGTA 61.248 61.111 33.06 18.08 45.96 2.74
403 404 2.747855 GGCACCAGCTGGCTGTAC 60.748 66.667 33.06 20.08 42.36 2.90
404 405 2.032528 GCACCAGCTGGCTGTACA 59.967 61.111 33.06 0.00 42.15 2.90
405 406 2.037136 GCACCAGCTGGCTGTACAG 61.037 63.158 33.06 18.93 42.15 2.74
406 407 1.372683 CACCAGCTGGCTGTACAGT 59.627 57.895 33.06 7.63 42.15 3.55
407 408 0.250467 CACCAGCTGGCTGTACAGTT 60.250 55.000 33.06 6.80 42.15 3.16
408 409 0.250467 ACCAGCTGGCTGTACAGTTG 60.250 55.000 33.06 14.40 45.65 3.16
409 410 1.580845 CCAGCTGGCTGTACAGTTGC 61.581 60.000 22.33 21.96 45.00 4.17
410 411 1.302832 AGCTGGCTGTACAGTTGCC 60.303 57.895 23.44 19.43 46.26 4.52
413 414 2.358737 GGCTGTACAGTTGCCGCT 60.359 61.111 23.44 0.00 37.11 5.52
414 415 2.391389 GGCTGTACAGTTGCCGCTC 61.391 63.158 23.44 4.65 37.11 5.03
415 416 1.374758 GCTGTACAGTTGCCGCTCT 60.375 57.895 23.44 0.00 0.00 4.09
416 417 0.951040 GCTGTACAGTTGCCGCTCTT 60.951 55.000 23.44 0.00 0.00 2.85
417 418 1.071605 CTGTACAGTTGCCGCTCTTC 58.928 55.000 15.06 0.00 0.00 2.87
418 419 0.320421 TGTACAGTTGCCGCTCTTCC 60.320 55.000 0.00 0.00 0.00 3.46
419 420 0.037232 GTACAGTTGCCGCTCTTCCT 60.037 55.000 0.00 0.00 0.00 3.36
420 421 0.685097 TACAGTTGCCGCTCTTCCTT 59.315 50.000 0.00 0.00 0.00 3.36
421 422 0.179018 ACAGTTGCCGCTCTTCCTTT 60.179 50.000 0.00 0.00 0.00 3.11
422 423 1.071699 ACAGTTGCCGCTCTTCCTTTA 59.928 47.619 0.00 0.00 0.00 1.85
423 424 2.290323 ACAGTTGCCGCTCTTCCTTTAT 60.290 45.455 0.00 0.00 0.00 1.40
424 425 3.055385 ACAGTTGCCGCTCTTCCTTTATA 60.055 43.478 0.00 0.00 0.00 0.98
425 426 4.130118 CAGTTGCCGCTCTTCCTTTATAT 58.870 43.478 0.00 0.00 0.00 0.86
426 427 4.024556 CAGTTGCCGCTCTTCCTTTATATG 60.025 45.833 0.00 0.00 0.00 1.78
427 428 3.838244 TGCCGCTCTTCCTTTATATGT 57.162 42.857 0.00 0.00 0.00 2.29
428 429 4.948341 TGCCGCTCTTCCTTTATATGTA 57.052 40.909 0.00 0.00 0.00 2.29
429 430 4.628074 TGCCGCTCTTCCTTTATATGTAC 58.372 43.478 0.00 0.00 0.00 2.90
430 431 4.344102 TGCCGCTCTTCCTTTATATGTACT 59.656 41.667 0.00 0.00 0.00 2.73
431 432 4.924462 GCCGCTCTTCCTTTATATGTACTC 59.076 45.833 0.00 0.00 0.00 2.59
432 433 5.509163 GCCGCTCTTCCTTTATATGTACTCA 60.509 44.000 0.00 0.00 0.00 3.41
433 434 6.692486 CCGCTCTTCCTTTATATGTACTCAT 58.308 40.000 0.00 0.00 38.00 2.90
434 435 7.155328 CCGCTCTTCCTTTATATGTACTCATT 58.845 38.462 0.00 0.00 35.70 2.57
435 436 7.657761 CCGCTCTTCCTTTATATGTACTCATTT 59.342 37.037 0.00 0.00 35.70 2.32
436 437 8.704234 CGCTCTTCCTTTATATGTACTCATTTC 58.296 37.037 0.00 0.00 35.70 2.17
437 438 8.704234 GCTCTTCCTTTATATGTACTCATTTCG 58.296 37.037 0.00 0.00 35.70 3.46
438 439 9.751542 CTCTTCCTTTATATGTACTCATTTCGT 57.248 33.333 0.00 0.00 35.70 3.85
442 443 9.878667 TCCTTTATATGTACTCATTTCGTTTCA 57.121 29.630 0.00 0.00 35.70 2.69
461 462 9.697250 TCGTTTCATAATATAAAAGCGTTCTTG 57.303 29.630 0.00 0.00 31.78 3.02
462 463 9.697250 CGTTTCATAATATAAAAGCGTTCTTGA 57.303 29.630 0.00 0.00 31.78 3.02
465 466 9.982291 TTCATAATATAAAAGCGTTCTTGACAC 57.018 29.630 0.00 0.00 31.78 3.67
466 467 9.378551 TCATAATATAAAAGCGTTCTTGACACT 57.621 29.630 0.00 0.00 31.78 3.55
473 474 7.449934 AAAAGCGTTCTTGACACTAAAATTG 57.550 32.000 0.00 0.00 31.78 2.32
474 475 5.108385 AGCGTTCTTGACACTAAAATTGG 57.892 39.130 0.00 0.00 0.00 3.16
475 476 4.819630 AGCGTTCTTGACACTAAAATTGGA 59.180 37.500 0.00 0.00 0.00 3.53
476 477 5.473504 AGCGTTCTTGACACTAAAATTGGAT 59.526 36.000 0.00 0.00 0.00 3.41
477 478 5.569059 GCGTTCTTGACACTAAAATTGGATG 59.431 40.000 0.00 0.00 0.00 3.51
478 479 6.086222 CGTTCTTGACACTAAAATTGGATGG 58.914 40.000 0.00 0.00 0.00 3.51
479 480 6.072728 CGTTCTTGACACTAAAATTGGATGGA 60.073 38.462 0.00 0.00 0.00 3.41
480 481 7.308435 GTTCTTGACACTAAAATTGGATGGAG 58.692 38.462 0.00 0.00 0.00 3.86
481 482 6.542821 TCTTGACACTAAAATTGGATGGAGT 58.457 36.000 0.00 0.00 0.00 3.85
482 483 7.685481 TCTTGACACTAAAATTGGATGGAGTA 58.315 34.615 0.00 0.00 0.00 2.59
483 484 7.824289 TCTTGACACTAAAATTGGATGGAGTAG 59.176 37.037 0.00 0.00 0.00 2.57
484 485 7.016153 TGACACTAAAATTGGATGGAGTAGT 57.984 36.000 0.00 0.00 0.00 2.73
485 486 7.458397 TGACACTAAAATTGGATGGAGTAGTT 58.542 34.615 0.00 0.00 0.00 2.24
486 487 7.942341 TGACACTAAAATTGGATGGAGTAGTTT 59.058 33.333 0.00 0.00 0.00 2.66
527 528 1.845809 GCAAGCTCACTGGTTCACGG 61.846 60.000 0.00 0.00 33.63 4.94
528 529 0.249868 CAAGCTCACTGGTTCACGGA 60.250 55.000 0.00 0.00 33.63 4.69
529 530 0.034059 AAGCTCACTGGTTCACGGAG 59.966 55.000 0.00 0.00 0.00 4.63
532 533 2.738521 CACTGGTTCACGGAGCCG 60.739 66.667 7.48 7.48 46.03 5.52
533 534 4.003788 ACTGGTTCACGGAGCCGG 62.004 66.667 14.07 12.06 43.52 6.13
534 535 3.691342 CTGGTTCACGGAGCCGGA 61.691 66.667 5.05 5.04 40.99 5.14
535 536 3.000819 TGGTTCACGGAGCCGGAT 61.001 61.111 5.05 0.00 44.69 4.18
536 537 2.202892 GGTTCACGGAGCCGGATC 60.203 66.667 12.38 12.38 44.69 3.36
537 538 2.202892 GTTCACGGAGCCGGATCC 60.203 66.667 29.31 29.31 44.69 3.36
538 539 3.467226 TTCACGGAGCCGGATCCC 61.467 66.667 32.27 15.15 44.69 3.85
543 544 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
544 545 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
545 546 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
546 547 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
547 548 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
548 549 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
549 550 2.416260 GGATCCCCTGACGTACGC 59.584 66.667 16.72 8.98 0.00 4.42
550 551 2.416260 GATCCCCTGACGTACGCC 59.584 66.667 16.72 4.46 0.00 5.68
551 552 3.148031 GATCCCCTGACGTACGCCC 62.148 68.421 16.72 8.29 0.00 6.13
607 608 2.972505 CACGTCAGTGTGTGGGCC 60.973 66.667 0.00 0.00 43.15 5.80
608 609 4.602259 ACGTCAGTGTGTGGGCCG 62.602 66.667 0.00 0.00 0.00 6.13
609 610 4.602259 CGTCAGTGTGTGGGCCGT 62.602 66.667 0.00 0.00 0.00 5.68
610 611 2.738480 GTCAGTGTGTGGGCCGTA 59.262 61.111 0.00 0.00 0.00 4.02
611 612 1.666872 GTCAGTGTGTGGGCCGTAC 60.667 63.158 0.00 0.29 0.00 3.67
612 613 2.736995 CAGTGTGTGGGCCGTACG 60.737 66.667 8.69 8.69 0.00 3.67
613 614 3.228759 AGTGTGTGGGCCGTACGT 61.229 61.111 15.21 0.00 0.00 3.57
614 615 2.735857 GTGTGTGGGCCGTACGTC 60.736 66.667 15.21 0.00 0.00 4.34
615 616 3.225061 TGTGTGGGCCGTACGTCA 61.225 61.111 15.21 6.80 0.00 4.35
616 617 2.431942 GTGTGGGCCGTACGTCAG 60.432 66.667 15.21 0.00 0.00 3.51
617 618 2.598099 TGTGGGCCGTACGTCAGA 60.598 61.111 15.21 5.46 0.00 3.27
618 619 2.126189 GTGGGCCGTACGTCAGAC 60.126 66.667 15.21 0.25 0.00 3.51
620 621 3.434319 GGGCCGTACGTCAGACGA 61.434 66.667 29.53 10.29 46.05 4.20
621 622 2.202401 GGCCGTACGTCAGACGAC 60.202 66.667 29.53 19.71 46.05 4.34
622 623 2.202401 GCCGTACGTCAGACGACC 60.202 66.667 29.53 16.64 46.05 4.79
623 624 2.482374 CCGTACGTCAGACGACCC 59.518 66.667 29.53 14.28 46.05 4.46
624 625 2.097160 CGTACGTCAGACGACCCG 59.903 66.667 29.53 21.16 46.05 5.28
625 626 2.202401 GTACGTCAGACGACCCGC 60.202 66.667 29.53 10.01 46.05 6.13
626 627 3.792047 TACGTCAGACGACCCGCG 61.792 66.667 29.53 0.00 46.05 6.46
636 637 4.754667 GACCCGCGTCCCTGGTTC 62.755 72.222 4.92 0.00 32.40 3.62
643 644 4.717313 GTCCCTGGTTCACGCCCC 62.717 72.222 0.00 0.00 0.00 5.80
660 661 1.977009 CCCCGGGCAAAGGAAACTC 60.977 63.158 17.73 0.00 42.68 3.01
666 667 0.313987 GGCAAAGGAAACTCGGGTTG 59.686 55.000 0.00 0.00 42.68 3.77
737 1007 2.159226 CGTCTCCTTCACTCGCCTAATT 60.159 50.000 0.00 0.00 0.00 1.40
791 1062 2.492090 GAGGATGCGACTCTGCGT 59.508 61.111 0.00 0.00 37.81 5.24
792 1063 1.875813 GAGGATGCGACTCTGCGTG 60.876 63.158 0.00 0.00 37.81 5.34
793 1064 3.558411 GGATGCGACTCTGCGTGC 61.558 66.667 0.00 0.00 37.81 5.34
794 1065 3.906649 GATGCGACTCTGCGTGCG 61.907 66.667 0.00 0.00 37.81 5.34
906 1427 1.204704 CAGCCATCCGTTCACAGAGTA 59.795 52.381 0.00 0.00 0.00 2.59
930 1451 2.186826 AGCCACACCGCAACTTCAC 61.187 57.895 0.00 0.00 0.00 3.18
939 1460 1.238439 CGCAACTTCACCTTCACCAT 58.762 50.000 0.00 0.00 0.00 3.55
941 1462 1.541588 GCAACTTCACCTTCACCATCC 59.458 52.381 0.00 0.00 0.00 3.51
967 1498 1.069596 TCAACGAGAAGCAGCAGCA 59.930 52.632 3.17 0.00 45.49 4.41
1024 1565 2.659016 CGGTGGAGAGCAAGAGCA 59.341 61.111 0.00 0.00 45.49 4.26
1356 1906 4.148825 CTCCTCCCGGCGGACAAG 62.149 72.222 30.79 20.51 33.32 3.16
1357 1907 4.689549 TCCTCCCGGCGGACAAGA 62.690 66.667 30.79 15.29 33.32 3.02
1494 2044 0.749649 CCATCAAGGACTCGGAGGAG 59.250 60.000 10.23 0.00 46.13 3.69
1572 2126 2.790791 CGCCTTCGCCCTCTGATCT 61.791 63.158 0.00 0.00 0.00 2.75
1574 2128 1.227497 CCTTCGCCCTCTGATCTGC 60.227 63.158 0.00 0.00 0.00 4.26
1633 2191 5.542779 AGAGATCGTTTGTAGAGCACTTTT 58.457 37.500 0.00 0.00 0.00 2.27
1648 2211 8.748380 AGAGCACTTTTAAATGTATTCTTTGC 57.252 30.769 6.43 4.89 0.00 3.68
1661 2224 8.601243 ATGTATTCTTTGCGTAAAAATTCGAG 57.399 30.769 0.00 0.00 0.00 4.04
1677 2244 7.674471 AAATTCGAGTAGGGAAAGAAAGAAG 57.326 36.000 0.00 0.00 0.00 2.85
1681 2248 5.047235 TCGAGTAGGGAAAGAAAGAAGGAAG 60.047 44.000 0.00 0.00 0.00 3.46
1682 2249 5.492895 GAGTAGGGAAAGAAAGAAGGAAGG 58.507 45.833 0.00 0.00 0.00 3.46
1692 2259 6.694445 AGAAAGAAGGAAGGAAGATTGAGA 57.306 37.500 0.00 0.00 0.00 3.27
1716 2286 7.669722 AGATCATAGTAAGCCCTTTTTGTTTGA 59.330 33.333 0.00 0.00 0.00 2.69
1720 2290 6.478512 AGTAAGCCCTTTTTGTTTGATTGA 57.521 33.333 0.00 0.00 0.00 2.57
1724 2299 5.065235 AGCCCTTTTTGTTTGATTGATTGG 58.935 37.500 0.00 0.00 0.00 3.16
1743 2318 8.592105 TGATTGGTTGACAAATTCTTTTGATC 57.408 30.769 5.52 0.00 44.11 2.92
1753 2328 1.061570 CTTTTGATCTCTGCGCGGC 59.938 57.895 12.58 0.00 0.00 6.53
1766 2342 2.322830 CGCGGCTCATCATCATGGG 61.323 63.158 0.00 0.00 32.92 4.00
1771 2347 1.233285 GCTCATCATCATGGGTCGCC 61.233 60.000 0.00 0.00 32.27 5.54
1844 2429 6.275335 ACGTAGTACTAGCTTGAAACAACAA 58.725 36.000 1.87 0.00 41.94 2.83
1851 2436 7.573968 ACTAGCTTGAAACAACAATTCTTCT 57.426 32.000 1.04 0.00 0.00 2.85
1870 2455 2.709125 TTTCTCCGGCGTCACCACTG 62.709 60.000 6.01 0.00 39.03 3.66
1871 2456 3.680786 CTCCGGCGTCACCACTGA 61.681 66.667 6.01 0.00 39.03 3.41
2000 2616 2.032924 GTGGGTGAGAAACGGTCAAAAG 59.967 50.000 0.00 0.00 0.00 2.27
2003 2619 2.294979 GTGAGAAACGGTCAAAAGGGT 58.705 47.619 0.00 0.00 0.00 4.34
2004 2620 2.686405 GTGAGAAACGGTCAAAAGGGTT 59.314 45.455 0.00 0.00 0.00 4.11
2010 2631 1.524008 CGGTCAAAAGGGTTGGAGCC 61.524 60.000 0.00 0.00 32.38 4.70
2030 2655 2.972021 CCCAACTTGTCAAAAAGGGGAT 59.028 45.455 7.63 0.00 32.93 3.85
2135 2772 2.107950 TCCAGATAAACAACTGCCCG 57.892 50.000 0.00 0.00 33.40 6.13
2136 2773 1.094785 CCAGATAAACAACTGCCCGG 58.905 55.000 0.00 0.00 33.40 5.73
2137 2774 1.613255 CCAGATAAACAACTGCCCGGT 60.613 52.381 0.00 0.00 33.40 5.28
2138 2775 2.159382 CAGATAAACAACTGCCCGGTT 58.841 47.619 0.00 0.00 0.00 4.44
2170 2807 2.103934 CCTTCGCTCTCGGCTCTG 59.896 66.667 0.00 0.00 39.13 3.35
2191 2828 4.636435 CACCCGGACCACCCACAC 62.636 72.222 0.73 0.00 34.14 3.82
2296 2939 2.195683 CACCTGTTGGCCTGTGGT 59.804 61.111 3.32 4.26 36.63 4.16
2324 2967 2.355363 CCTCGTGAAACCGCGTGA 60.355 61.111 4.92 0.00 38.56 4.35
2325 2968 2.654912 CCTCGTGAAACCGCGTGAC 61.655 63.158 4.92 0.00 38.56 3.67
2327 2970 1.282248 CTCGTGAAACCGCGTGACAT 61.282 55.000 4.92 0.00 38.56 3.06
2328 2971 1.154672 CGTGAAACCGCGTGACATG 60.155 57.895 4.92 1.57 33.32 3.21
2329 2972 1.206578 GTGAAACCGCGTGACATGG 59.793 57.895 4.92 0.00 0.00 3.66
2333 2976 4.634703 ACCGCGTGACATGGGCAA 62.635 61.111 4.92 0.00 0.00 4.52
2397 3062 3.394836 GCTCCTCTCCCGTGGCTT 61.395 66.667 0.00 0.00 0.00 4.35
2399 3064 3.672295 CTCCTCTCCCGTGGCTTGC 62.672 68.421 0.00 0.00 0.00 4.01
2400 3065 4.020617 CCTCTCCCGTGGCTTGCA 62.021 66.667 0.00 0.00 0.00 4.08
2401 3066 2.270205 CTCTCCCGTGGCTTGCAT 59.730 61.111 0.00 0.00 0.00 3.96
2402 3067 1.817099 CTCTCCCGTGGCTTGCATC 60.817 63.158 0.00 0.00 0.00 3.91
2403 3068 2.249413 CTCTCCCGTGGCTTGCATCT 62.249 60.000 0.00 0.00 0.00 2.90
2434 3102 1.061570 GCTTTTCTCATCGGCGCAG 59.938 57.895 10.83 5.07 0.00 5.18
2516 3204 4.483243 CGTGGGATGGGAACGGGG 62.483 72.222 0.00 0.00 33.77 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.067833 TCCGCAAATTACGTTGTCATCA 58.932 40.909 0.00 0.00 0.00 3.07
10 11 3.071479 AGTCCGCAAATTACGTTGTCAT 58.929 40.909 0.00 0.00 0.00 3.06
12 13 2.477375 TCAGTCCGCAAATTACGTTGTC 59.523 45.455 0.00 0.00 0.00 3.18
13 14 2.222445 GTCAGTCCGCAAATTACGTTGT 59.778 45.455 0.00 0.00 0.00 3.32
14 15 2.412325 GGTCAGTCCGCAAATTACGTTG 60.412 50.000 0.00 0.00 0.00 4.10
15 16 1.802365 GGTCAGTCCGCAAATTACGTT 59.198 47.619 0.00 0.00 0.00 3.99
16 17 1.435577 GGTCAGTCCGCAAATTACGT 58.564 50.000 0.00 0.00 0.00 3.57
27 28 1.784525 CTCAAGAACACGGTCAGTCC 58.215 55.000 0.00 0.00 0.00 3.85
28 29 1.140816 GCTCAAGAACACGGTCAGTC 58.859 55.000 0.00 0.00 0.00 3.51
29 30 0.753262 AGCTCAAGAACACGGTCAGT 59.247 50.000 0.00 0.00 0.00 3.41
30 31 2.288213 TGTAGCTCAAGAACACGGTCAG 60.288 50.000 0.00 0.00 0.00 3.51
31 32 1.684450 TGTAGCTCAAGAACACGGTCA 59.316 47.619 0.00 0.00 0.00 4.02
32 33 2.059541 GTGTAGCTCAAGAACACGGTC 58.940 52.381 1.14 0.00 34.72 4.79
33 34 1.411246 TGTGTAGCTCAAGAACACGGT 59.589 47.619 11.13 0.00 45.09 4.83
34 35 2.061773 CTGTGTAGCTCAAGAACACGG 58.938 52.381 10.36 10.36 45.09 4.94
35 36 2.061773 CCTGTGTAGCTCAAGAACACG 58.938 52.381 11.13 6.82 45.09 4.49
36 37 1.801178 GCCTGTGTAGCTCAAGAACAC 59.199 52.381 9.34 9.34 43.00 3.32
37 38 1.416030 TGCCTGTGTAGCTCAAGAACA 59.584 47.619 0.00 0.00 0.00 3.18
38 39 2.169832 TGCCTGTGTAGCTCAAGAAC 57.830 50.000 0.00 0.00 0.00 3.01
39 40 4.760530 ATATGCCTGTGTAGCTCAAGAA 57.239 40.909 0.00 0.00 0.00 2.52
40 41 4.162131 TGAATATGCCTGTGTAGCTCAAGA 59.838 41.667 0.00 0.00 0.00 3.02
41 42 4.445453 TGAATATGCCTGTGTAGCTCAAG 58.555 43.478 0.00 0.00 0.00 3.02
42 43 4.486125 TGAATATGCCTGTGTAGCTCAA 57.514 40.909 0.00 0.00 0.00 3.02
43 44 4.486125 TTGAATATGCCTGTGTAGCTCA 57.514 40.909 0.00 0.00 0.00 4.26
44 45 5.528690 TCATTTGAATATGCCTGTGTAGCTC 59.471 40.000 0.00 0.00 0.00 4.09
45 46 5.297776 GTCATTTGAATATGCCTGTGTAGCT 59.702 40.000 0.00 0.00 0.00 3.32
46 47 5.066375 TGTCATTTGAATATGCCTGTGTAGC 59.934 40.000 0.00 0.00 0.00 3.58
47 48 6.093909 TGTGTCATTTGAATATGCCTGTGTAG 59.906 38.462 0.00 0.00 0.00 2.74
48 49 5.942826 TGTGTCATTTGAATATGCCTGTGTA 59.057 36.000 0.00 0.00 0.00 2.90
49 50 4.766373 TGTGTCATTTGAATATGCCTGTGT 59.234 37.500 0.00 0.00 0.00 3.72
50 51 5.313520 TGTGTCATTTGAATATGCCTGTG 57.686 39.130 0.00 0.00 0.00 3.66
51 52 5.336690 GGTTGTGTCATTTGAATATGCCTGT 60.337 40.000 0.00 0.00 0.00 4.00
52 53 5.104374 GGTTGTGTCATTTGAATATGCCTG 58.896 41.667 0.00 0.00 0.00 4.85
53 54 4.160252 GGGTTGTGTCATTTGAATATGCCT 59.840 41.667 0.00 0.00 0.00 4.75
54 55 4.160252 AGGGTTGTGTCATTTGAATATGCC 59.840 41.667 0.00 0.00 0.00 4.40
55 56 5.126061 AGAGGGTTGTGTCATTTGAATATGC 59.874 40.000 0.00 0.00 0.00 3.14
56 57 6.764308 AGAGGGTTGTGTCATTTGAATATG 57.236 37.500 0.00 0.00 0.00 1.78
57 58 6.350445 GCAAGAGGGTTGTGTCATTTGAATAT 60.350 38.462 0.00 0.00 0.00 1.28
58 59 5.048083 GCAAGAGGGTTGTGTCATTTGAATA 60.048 40.000 0.00 0.00 0.00 1.75
59 60 4.262164 GCAAGAGGGTTGTGTCATTTGAAT 60.262 41.667 0.00 0.00 0.00 2.57
60 61 3.068024 GCAAGAGGGTTGTGTCATTTGAA 59.932 43.478 0.00 0.00 0.00 2.69
61 62 2.622942 GCAAGAGGGTTGTGTCATTTGA 59.377 45.455 0.00 0.00 0.00 2.69
62 63 2.624838 AGCAAGAGGGTTGTGTCATTTG 59.375 45.455 0.00 0.00 0.00 2.32
63 64 2.887152 GAGCAAGAGGGTTGTGTCATTT 59.113 45.455 0.00 0.00 0.00 2.32
64 65 2.508526 GAGCAAGAGGGTTGTGTCATT 58.491 47.619 0.00 0.00 0.00 2.57
65 66 1.609061 CGAGCAAGAGGGTTGTGTCAT 60.609 52.381 0.00 0.00 0.00 3.06
66 67 0.249868 CGAGCAAGAGGGTTGTGTCA 60.250 55.000 0.00 0.00 0.00 3.58
67 68 1.569479 GCGAGCAAGAGGGTTGTGTC 61.569 60.000 0.00 0.00 0.00 3.67
68 69 1.598130 GCGAGCAAGAGGGTTGTGT 60.598 57.895 0.00 0.00 0.00 3.72
69 70 2.328099 GGCGAGCAAGAGGGTTGTG 61.328 63.158 0.00 0.00 0.00 3.33
70 71 2.032681 GGCGAGCAAGAGGGTTGT 59.967 61.111 0.00 0.00 0.00 3.32
71 72 1.600636 TTGGCGAGCAAGAGGGTTG 60.601 57.895 0.00 0.00 0.00 3.77
72 73 1.600916 GTTGGCGAGCAAGAGGGTT 60.601 57.895 0.00 0.00 0.00 4.11
73 74 2.032681 GTTGGCGAGCAAGAGGGT 59.967 61.111 0.00 0.00 0.00 4.34
74 75 0.962356 AATGTTGGCGAGCAAGAGGG 60.962 55.000 0.00 0.00 0.00 4.30
75 76 0.883833 AAATGTTGGCGAGCAAGAGG 59.116 50.000 0.00 0.00 0.00 3.69
76 77 4.361451 AATAAATGTTGGCGAGCAAGAG 57.639 40.909 0.00 0.00 0.00 2.85
77 78 4.782019 AAATAAATGTTGGCGAGCAAGA 57.218 36.364 0.00 0.00 0.00 3.02
78 79 5.163513 AGAAAATAAATGTTGGCGAGCAAG 58.836 37.500 0.00 0.00 0.00 4.01
79 80 5.132897 AGAAAATAAATGTTGGCGAGCAA 57.867 34.783 0.00 0.00 0.00 3.91
80 81 4.782019 AGAAAATAAATGTTGGCGAGCA 57.218 36.364 0.00 0.00 0.00 4.26
81 82 6.466308 AAAAGAAAATAAATGTTGGCGAGC 57.534 33.333 0.00 0.00 0.00 5.03
113 114 3.879180 ATGAAACGGTGGTGCCCCC 62.879 63.158 0.00 0.00 0.00 5.40
114 115 1.873270 GAATGAAACGGTGGTGCCCC 61.873 60.000 0.00 0.00 0.00 5.80
115 116 1.584495 GAATGAAACGGTGGTGCCC 59.416 57.895 0.00 0.00 0.00 5.36
116 117 1.209127 CGAATGAAACGGTGGTGCC 59.791 57.895 0.00 0.00 0.00 5.01
117 118 0.165944 CTCGAATGAAACGGTGGTGC 59.834 55.000 0.00 0.00 0.00 5.01
118 119 0.796312 CCTCGAATGAAACGGTGGTG 59.204 55.000 0.00 0.00 0.00 4.17
119 120 0.395312 ACCTCGAATGAAACGGTGGT 59.605 50.000 0.00 0.00 35.04 4.16
120 121 1.076332 GACCTCGAATGAAACGGTGG 58.924 55.000 0.00 0.00 0.00 4.61
121 122 1.790755 TGACCTCGAATGAAACGGTG 58.209 50.000 0.00 0.00 0.00 4.94
122 123 2.762535 ATGACCTCGAATGAAACGGT 57.237 45.000 0.00 0.00 0.00 4.83
123 124 2.351726 GGAATGACCTCGAATGAAACGG 59.648 50.000 0.00 0.00 35.41 4.44
124 125 3.000041 TGGAATGACCTCGAATGAAACG 59.000 45.455 0.00 0.00 39.86 3.60
125 126 4.260375 CGATGGAATGACCTCGAATGAAAC 60.260 45.833 0.00 0.00 39.67 2.78
126 127 3.871006 CGATGGAATGACCTCGAATGAAA 59.129 43.478 0.00 0.00 39.67 2.69
127 128 3.457234 CGATGGAATGACCTCGAATGAA 58.543 45.455 0.00 0.00 39.67 2.57
128 129 2.803133 GCGATGGAATGACCTCGAATGA 60.803 50.000 0.00 0.00 39.67 2.57
129 130 1.528586 GCGATGGAATGACCTCGAATG 59.471 52.381 0.00 0.00 39.67 2.67
130 131 1.541233 GGCGATGGAATGACCTCGAAT 60.541 52.381 0.00 0.00 39.67 3.34
131 132 0.179084 GGCGATGGAATGACCTCGAA 60.179 55.000 0.00 0.00 39.67 3.71
132 133 1.043116 AGGCGATGGAATGACCTCGA 61.043 55.000 0.00 0.00 39.67 4.04
133 134 0.877649 CAGGCGATGGAATGACCTCG 60.878 60.000 0.00 0.00 39.99 4.63
134 135 1.162800 GCAGGCGATGGAATGACCTC 61.163 60.000 0.00 0.00 39.86 3.85
135 136 1.153086 GCAGGCGATGGAATGACCT 60.153 57.895 0.00 0.00 39.86 3.85
136 137 1.153086 AGCAGGCGATGGAATGACC 60.153 57.895 0.00 0.00 39.54 4.02
137 138 2.020131 CAGCAGGCGATGGAATGAC 58.980 57.895 0.00 0.00 0.00 3.06
138 139 1.820906 GCAGCAGGCGATGGAATGA 60.821 57.895 0.00 0.00 0.00 2.57
139 140 2.719979 GCAGCAGGCGATGGAATG 59.280 61.111 0.00 0.00 0.00 2.67
140 141 2.517875 GGCAGCAGGCGATGGAAT 60.518 61.111 0.00 0.00 46.16 3.01
141 142 2.842188 AATGGCAGCAGGCGATGGAA 62.842 55.000 0.00 0.00 46.16 3.53
142 143 2.842188 AAATGGCAGCAGGCGATGGA 62.842 55.000 0.00 0.00 46.16 3.41
143 144 2.420568 AAATGGCAGCAGGCGATGG 61.421 57.895 0.00 0.00 46.16 3.51
144 145 1.226859 CAAATGGCAGCAGGCGATG 60.227 57.895 0.00 0.00 46.16 3.84
145 146 3.072486 GCAAATGGCAGCAGGCGAT 62.072 57.895 0.00 0.00 46.16 4.58
146 147 3.751246 GCAAATGGCAGCAGGCGA 61.751 61.111 0.00 0.00 46.16 5.54
148 149 4.060038 ACGCAAATGGCAGCAGGC 62.060 61.111 0.00 0.00 45.17 4.85
149 150 2.126228 CACGCAAATGGCAGCAGG 60.126 61.111 0.00 0.00 45.17 4.85
150 151 1.154093 CTCACGCAAATGGCAGCAG 60.154 57.895 0.00 0.00 45.17 4.24
151 152 2.628696 CCTCACGCAAATGGCAGCA 61.629 57.895 0.00 0.00 45.17 4.41
152 153 2.180017 CCTCACGCAAATGGCAGC 59.820 61.111 0.00 0.00 45.17 5.25
153 154 0.957395 ACTCCTCACGCAAATGGCAG 60.957 55.000 0.00 0.00 45.17 4.85
154 155 1.073025 ACTCCTCACGCAAATGGCA 59.927 52.632 0.00 0.00 45.17 4.92
155 156 1.503542 CACTCCTCACGCAAATGGC 59.496 57.895 0.00 0.00 39.90 4.40
156 157 1.926511 GCCACTCCTCACGCAAATGG 61.927 60.000 0.00 0.00 0.00 3.16
157 158 0.957395 AGCCACTCCTCACGCAAATG 60.957 55.000 0.00 0.00 0.00 2.32
158 159 0.674895 GAGCCACTCCTCACGCAAAT 60.675 55.000 0.00 0.00 0.00 2.32
159 160 1.301716 GAGCCACTCCTCACGCAAA 60.302 57.895 0.00 0.00 0.00 3.68
160 161 2.343758 GAGCCACTCCTCACGCAA 59.656 61.111 0.00 0.00 0.00 4.85
161 162 4.056125 CGAGCCACTCCTCACGCA 62.056 66.667 0.00 0.00 0.00 5.24
162 163 3.749064 TCGAGCCACTCCTCACGC 61.749 66.667 0.00 0.00 0.00 5.34
163 164 2.142357 TTGTCGAGCCACTCCTCACG 62.142 60.000 0.00 0.00 0.00 4.35
164 165 0.667792 GTTGTCGAGCCACTCCTCAC 60.668 60.000 0.00 0.00 0.00 3.51
165 166 1.112916 TGTTGTCGAGCCACTCCTCA 61.113 55.000 0.00 0.00 0.00 3.86
166 167 0.247736 ATGTTGTCGAGCCACTCCTC 59.752 55.000 0.00 0.00 0.00 3.71
167 168 0.036952 CATGTTGTCGAGCCACTCCT 60.037 55.000 0.00 0.00 0.00 3.69
168 169 1.021390 CCATGTTGTCGAGCCACTCC 61.021 60.000 0.00 0.00 0.00 3.85
169 170 1.639298 GCCATGTTGTCGAGCCACTC 61.639 60.000 0.00 0.00 0.00 3.51
170 171 1.672356 GCCATGTTGTCGAGCCACT 60.672 57.895 0.00 0.00 0.00 4.00
171 172 2.870372 GCCATGTTGTCGAGCCAC 59.130 61.111 0.00 0.00 0.00 5.01
172 173 2.741985 CGCCATGTTGTCGAGCCA 60.742 61.111 0.00 0.00 0.00 4.75
173 174 3.499737 CCGCCATGTTGTCGAGCC 61.500 66.667 0.00 0.00 0.00 4.70
174 175 2.742372 ACCGCCATGTTGTCGAGC 60.742 61.111 0.00 0.00 0.00 5.03
175 176 2.390599 CCACCGCCATGTTGTCGAG 61.391 63.158 0.00 0.00 0.00 4.04
176 177 2.178876 ATCCACCGCCATGTTGTCGA 62.179 55.000 0.00 0.00 0.00 4.20
177 178 1.745115 ATCCACCGCCATGTTGTCG 60.745 57.895 0.00 0.00 0.00 4.35
178 179 1.656818 CCATCCACCGCCATGTTGTC 61.657 60.000 0.00 0.00 0.00 3.18
179 180 1.678635 CCATCCACCGCCATGTTGT 60.679 57.895 0.00 0.00 0.00 3.32
180 181 2.417257 CCCATCCACCGCCATGTTG 61.417 63.158 0.00 0.00 0.00 3.33
181 182 2.044053 CCCATCCACCGCCATGTT 60.044 61.111 0.00 0.00 0.00 2.71
182 183 3.014538 TCCCATCCACCGCCATGT 61.015 61.111 0.00 0.00 0.00 3.21
183 184 2.516930 GTCCCATCCACCGCCATG 60.517 66.667 0.00 0.00 0.00 3.66
184 185 4.175337 CGTCCCATCCACCGCCAT 62.175 66.667 0.00 0.00 0.00 4.40
186 187 3.400599 ATTCGTCCCATCCACCGCC 62.401 63.158 0.00 0.00 0.00 6.13
187 188 1.887707 GATTCGTCCCATCCACCGC 60.888 63.158 0.00 0.00 0.00 5.68
188 189 1.591594 CGATTCGTCCCATCCACCG 60.592 63.158 0.00 0.00 0.00 4.94
189 190 0.529992 GTCGATTCGTCCCATCCACC 60.530 60.000 5.89 0.00 0.00 4.61
190 191 0.460311 AGTCGATTCGTCCCATCCAC 59.540 55.000 5.89 0.00 0.00 4.02
191 192 2.061509 TAGTCGATTCGTCCCATCCA 57.938 50.000 5.89 0.00 0.00 3.41
192 193 2.557056 TGATAGTCGATTCGTCCCATCC 59.443 50.000 5.89 0.00 0.00 3.51
193 194 3.004419 TGTGATAGTCGATTCGTCCCATC 59.996 47.826 5.89 7.14 0.00 3.51
194 195 2.956333 TGTGATAGTCGATTCGTCCCAT 59.044 45.455 5.89 0.00 0.00 4.00
195 196 2.371306 TGTGATAGTCGATTCGTCCCA 58.629 47.619 5.89 0.00 0.00 4.37
196 197 3.309388 CATGTGATAGTCGATTCGTCCC 58.691 50.000 5.89 0.00 0.00 4.46
197 198 2.726760 GCATGTGATAGTCGATTCGTCC 59.273 50.000 5.89 0.00 0.00 4.79
198 199 3.633235 AGCATGTGATAGTCGATTCGTC 58.367 45.455 5.89 0.05 0.00 4.20
199 200 3.316588 AGAGCATGTGATAGTCGATTCGT 59.683 43.478 5.89 0.00 0.00 3.85
200 201 3.894920 AGAGCATGTGATAGTCGATTCG 58.105 45.455 0.00 0.00 0.00 3.34
201 202 4.233789 GGAGAGCATGTGATAGTCGATTC 58.766 47.826 0.00 0.00 0.00 2.52
202 203 3.304996 CGGAGAGCATGTGATAGTCGATT 60.305 47.826 0.00 0.00 0.00 3.34
203 204 2.227626 CGGAGAGCATGTGATAGTCGAT 59.772 50.000 0.00 0.00 0.00 3.59
204 205 1.604278 CGGAGAGCATGTGATAGTCGA 59.396 52.381 0.00 0.00 0.00 4.20
205 206 1.335182 ACGGAGAGCATGTGATAGTCG 59.665 52.381 0.00 0.00 0.00 4.18
206 207 4.216472 TCATACGGAGAGCATGTGATAGTC 59.784 45.833 0.00 0.00 0.00 2.59
207 208 4.022762 GTCATACGGAGAGCATGTGATAGT 60.023 45.833 0.00 0.00 0.00 2.12
208 209 4.022849 TGTCATACGGAGAGCATGTGATAG 60.023 45.833 0.00 0.00 0.00 2.08
209 210 3.888930 TGTCATACGGAGAGCATGTGATA 59.111 43.478 0.00 0.00 0.00 2.15
210 211 2.695147 TGTCATACGGAGAGCATGTGAT 59.305 45.455 0.00 0.00 0.00 3.06
211 212 2.099405 TGTCATACGGAGAGCATGTGA 58.901 47.619 0.00 0.00 0.00 3.58
212 213 2.099756 TCTGTCATACGGAGAGCATGTG 59.900 50.000 0.00 0.00 36.86 3.21
213 214 2.099921 GTCTGTCATACGGAGAGCATGT 59.900 50.000 0.00 0.00 36.86 3.21
214 215 2.736978 GTCTGTCATACGGAGAGCATG 58.263 52.381 0.00 0.00 36.86 4.06
215 216 1.335182 CGTCTGTCATACGGAGAGCAT 59.665 52.381 2.96 0.00 36.86 3.79
216 217 0.733150 CGTCTGTCATACGGAGAGCA 59.267 55.000 2.96 0.00 36.86 4.26
217 218 3.535691 CGTCTGTCATACGGAGAGC 57.464 57.895 2.96 0.00 36.86 4.09
223 224 2.106332 GGCCCCGTCTGTCATACG 59.894 66.667 3.89 3.89 40.01 3.06
224 225 2.363975 TGGGCCCCGTCTGTCATAC 61.364 63.158 22.27 0.00 0.00 2.39
225 226 2.039787 TGGGCCCCGTCTGTCATA 59.960 61.111 22.27 0.00 0.00 2.15
226 227 3.717294 GTGGGCCCCGTCTGTCAT 61.717 66.667 22.27 0.00 0.00 3.06
227 228 4.954118 AGTGGGCCCCGTCTGTCA 62.954 66.667 22.27 0.00 0.00 3.58
228 229 3.637273 AAGTGGGCCCCGTCTGTC 61.637 66.667 22.27 0.68 0.00 3.51
229 230 3.953775 CAAGTGGGCCCCGTCTGT 61.954 66.667 22.27 3.80 0.00 3.41
230 231 3.901797 GACAAGTGGGCCCCGTCTG 62.902 68.421 22.27 13.91 0.00 3.51
231 232 3.637273 GACAAGTGGGCCCCGTCT 61.637 66.667 22.27 12.56 0.00 4.18
232 233 3.901797 CTGACAAGTGGGCCCCGTC 62.902 68.421 22.27 20.16 0.00 4.79
233 234 3.953775 CTGACAAGTGGGCCCCGT 61.954 66.667 22.27 11.50 0.00 5.28
235 236 3.808218 TTGCTGACAAGTGGGCCCC 62.808 63.158 22.27 11.17 0.00 5.80
236 237 1.809567 CTTTGCTGACAAGTGGGCCC 61.810 60.000 17.59 17.59 37.04 5.80
237 238 1.662044 CTTTGCTGACAAGTGGGCC 59.338 57.895 0.00 0.00 37.04 5.80
238 239 1.006922 GCTTTGCTGACAAGTGGGC 60.007 57.895 0.00 0.00 37.04 5.36
239 240 0.746063 TTGCTTTGCTGACAAGTGGG 59.254 50.000 0.00 0.00 37.04 4.61
240 241 2.195922 GTTTGCTTTGCTGACAAGTGG 58.804 47.619 0.00 0.00 37.04 4.00
241 242 2.855963 CTGTTTGCTTTGCTGACAAGTG 59.144 45.455 0.00 0.00 37.04 3.16
242 243 2.754552 TCTGTTTGCTTTGCTGACAAGT 59.245 40.909 0.00 0.00 37.04 3.16
243 244 3.111098 GTCTGTTTGCTTTGCTGACAAG 58.889 45.455 0.00 0.00 37.04 3.16
244 245 2.491298 TGTCTGTTTGCTTTGCTGACAA 59.509 40.909 0.00 0.00 37.86 3.18
245 246 2.090760 TGTCTGTTTGCTTTGCTGACA 58.909 42.857 0.00 0.00 38.25 3.58
246 247 2.849880 TGTCTGTTTGCTTTGCTGAC 57.150 45.000 0.00 0.00 0.00 3.51
247 248 5.512753 TTTATGTCTGTTTGCTTTGCTGA 57.487 34.783 0.00 0.00 0.00 4.26
248 249 6.586868 TTTTTATGTCTGTTTGCTTTGCTG 57.413 33.333 0.00 0.00 0.00 4.41
272 273 8.696043 ACTGTGCAAACATGGATATATATGTT 57.304 30.769 0.00 7.70 46.33 2.71
273 274 8.696043 AACTGTGCAAACATGGATATATATGT 57.304 30.769 0.00 0.00 39.08 2.29
274 275 9.970395 AAAACTGTGCAAACATGGATATATATG 57.030 29.630 0.00 0.00 0.00 1.78
300 301 6.430000 CGACTCCTTCAGAATTAAGGGAAAAA 59.570 38.462 5.79 0.00 43.20 1.94
301 302 5.938125 CGACTCCTTCAGAATTAAGGGAAAA 59.062 40.000 5.79 0.00 43.20 2.29
302 303 5.488341 CGACTCCTTCAGAATTAAGGGAAA 58.512 41.667 5.79 0.00 43.20 3.13
303 304 4.623171 GCGACTCCTTCAGAATTAAGGGAA 60.623 45.833 5.79 0.00 43.20 3.97
304 305 3.118738 GCGACTCCTTCAGAATTAAGGGA 60.119 47.826 5.79 0.00 43.20 4.20
305 306 3.118592 AGCGACTCCTTCAGAATTAAGGG 60.119 47.826 5.79 0.75 43.20 3.95
306 307 4.130286 AGCGACTCCTTCAGAATTAAGG 57.870 45.455 0.00 0.00 44.17 2.69
307 308 8.085296 ACATATAGCGACTCCTTCAGAATTAAG 58.915 37.037 0.00 0.00 0.00 1.85
308 309 7.952671 ACATATAGCGACTCCTTCAGAATTAA 58.047 34.615 0.00 0.00 0.00 1.40
309 310 7.526142 ACATATAGCGACTCCTTCAGAATTA 57.474 36.000 0.00 0.00 0.00 1.40
310 311 6.412362 ACATATAGCGACTCCTTCAGAATT 57.588 37.500 0.00 0.00 0.00 2.17
311 312 6.412362 AACATATAGCGACTCCTTCAGAAT 57.588 37.500 0.00 0.00 0.00 2.40
312 313 5.854010 AACATATAGCGACTCCTTCAGAA 57.146 39.130 0.00 0.00 0.00 3.02
313 314 5.592054 CAAACATATAGCGACTCCTTCAGA 58.408 41.667 0.00 0.00 0.00 3.27
314 315 4.210120 GCAAACATATAGCGACTCCTTCAG 59.790 45.833 0.00 0.00 0.00 3.02
315 316 4.119862 GCAAACATATAGCGACTCCTTCA 58.880 43.478 0.00 0.00 0.00 3.02
316 317 4.119862 TGCAAACATATAGCGACTCCTTC 58.880 43.478 0.00 0.00 0.00 3.46
317 318 4.137116 TGCAAACATATAGCGACTCCTT 57.863 40.909 0.00 0.00 0.00 3.36
318 319 3.819564 TGCAAACATATAGCGACTCCT 57.180 42.857 0.00 0.00 0.00 3.69
319 320 4.495844 GGTTTGCAAACATATAGCGACTCC 60.496 45.833 35.95 15.86 40.63 3.85
320 321 4.588278 GGTTTGCAAACATATAGCGACTC 58.412 43.478 35.95 15.64 40.63 3.36
321 322 3.063452 CGGTTTGCAAACATATAGCGACT 59.937 43.478 35.95 0.00 40.63 4.18
322 323 3.350912 CGGTTTGCAAACATATAGCGAC 58.649 45.455 35.95 18.54 40.63 5.19
323 324 2.223157 GCGGTTTGCAAACATATAGCGA 60.223 45.455 35.95 0.08 45.45 4.93
324 325 2.108700 GCGGTTTGCAAACATATAGCG 58.891 47.619 35.95 29.14 45.45 4.26
325 326 2.108700 CGCGGTTTGCAAACATATAGC 58.891 47.619 35.95 28.71 46.97 2.97
326 327 2.108700 GCGCGGTTTGCAAACATATAG 58.891 47.619 35.95 24.03 46.97 1.31
327 328 1.468914 TGCGCGGTTTGCAAACATATA 59.531 42.857 35.95 19.15 46.97 0.86
328 329 0.242286 TGCGCGGTTTGCAAACATAT 59.758 45.000 35.95 0.00 46.97 1.78
329 330 0.661780 GTGCGCGGTTTGCAAACATA 60.662 50.000 35.95 18.23 45.23 2.29
330 331 1.948635 GTGCGCGGTTTGCAAACAT 60.949 52.632 35.95 0.00 45.23 2.71
331 332 2.580867 GTGCGCGGTTTGCAAACA 60.581 55.556 35.95 18.03 45.23 2.83
332 333 3.677340 CGTGCGCGGTTTGCAAAC 61.677 61.111 30.09 30.09 45.23 2.93
349 350 4.210304 GAACGGATGCGCTCGTGC 62.210 66.667 20.29 16.28 39.70 5.34
350 351 3.902063 CGAACGGATGCGCTCGTG 61.902 66.667 21.94 8.84 39.70 4.35
351 352 2.884087 ATTCGAACGGATGCGCTCGT 62.884 55.000 27.27 13.47 41.71 4.18
352 353 2.230940 ATTCGAACGGATGCGCTCG 61.231 57.895 23.80 23.80 0.00 5.03
353 354 1.145759 TCATTCGAACGGATGCGCTC 61.146 55.000 9.73 2.56 0.00 5.03
354 355 0.530650 ATCATTCGAACGGATGCGCT 60.531 50.000 9.73 0.00 0.00 5.92
355 356 0.383491 CATCATTCGAACGGATGCGC 60.383 55.000 21.65 0.00 32.87 6.09
356 357 3.715839 CATCATTCGAACGGATGCG 57.284 52.632 21.65 4.58 32.87 4.73
358 359 0.383491 GCGCATCATTCGAACGGATG 60.383 55.000 25.94 25.94 40.99 3.51
359 360 1.498865 GGCGCATCATTCGAACGGAT 61.499 55.000 10.83 3.99 0.00 4.18
360 361 2.171079 GGCGCATCATTCGAACGGA 61.171 57.895 10.83 1.25 0.00 4.69
361 362 2.324477 GGCGCATCATTCGAACGG 59.676 61.111 10.83 0.00 0.00 4.44
362 363 2.094126 GAGGGCGCATCATTCGAACG 62.094 60.000 10.83 0.00 0.00 3.95
363 364 0.811616 AGAGGGCGCATCATTCGAAC 60.812 55.000 10.83 0.00 0.00 3.95
364 365 0.107703 AAGAGGGCGCATCATTCGAA 60.108 50.000 10.83 0.00 0.00 3.71
365 366 0.530650 GAAGAGGGCGCATCATTCGA 60.531 55.000 10.83 0.00 0.00 3.71
366 367 0.531532 AGAAGAGGGCGCATCATTCG 60.532 55.000 10.83 0.00 0.00 3.34
367 368 0.942962 CAGAAGAGGGCGCATCATTC 59.057 55.000 10.83 8.15 0.00 2.67
368 369 0.465097 CCAGAAGAGGGCGCATCATT 60.465 55.000 10.83 0.00 0.00 2.57
369 370 1.147824 CCAGAAGAGGGCGCATCAT 59.852 57.895 10.83 0.00 0.00 2.45
370 371 2.586245 CCAGAAGAGGGCGCATCA 59.414 61.111 10.83 0.00 0.00 3.07
371 372 2.899339 GCCAGAAGAGGGCGCATC 60.899 66.667 10.83 6.76 42.39 3.91
377 378 2.045536 GCTGGTGCCAGAAGAGGG 60.046 66.667 21.34 0.00 46.30 4.30
378 379 1.376942 CAGCTGGTGCCAGAAGAGG 60.377 63.158 21.34 2.24 46.30 3.69
379 380 1.376942 CCAGCTGGTGCCAGAAGAG 60.377 63.158 25.53 7.38 46.30 2.85
380 381 2.752358 CCAGCTGGTGCCAGAAGA 59.248 61.111 25.53 0.00 46.30 2.87
381 382 3.060615 GCCAGCTGGTGCCAGAAG 61.061 66.667 32.81 11.87 46.30 2.85
382 383 3.573229 AGCCAGCTGGTGCCAGAA 61.573 61.111 32.81 0.00 46.30 3.02
383 384 4.340246 CAGCCAGCTGGTGCCAGA 62.340 66.667 32.81 0.00 46.30 3.86
392 393 4.386413 GCAACTGTACAGCCAGCT 57.614 55.556 22.90 0.00 35.83 4.24
396 397 2.358737 AGCGGCAACTGTACAGCC 60.359 61.111 22.90 17.69 44.89 4.85
397 398 0.951040 AAGAGCGGCAACTGTACAGC 60.951 55.000 22.90 9.92 0.00 4.40
398 399 1.071605 GAAGAGCGGCAACTGTACAG 58.928 55.000 21.44 21.44 0.00 2.74
399 400 0.320421 GGAAGAGCGGCAACTGTACA 60.320 55.000 1.45 0.00 0.00 2.90
400 401 0.037232 AGGAAGAGCGGCAACTGTAC 60.037 55.000 1.45 0.00 0.00 2.90
401 402 0.685097 AAGGAAGAGCGGCAACTGTA 59.315 50.000 1.45 0.00 0.00 2.74
402 403 0.179018 AAAGGAAGAGCGGCAACTGT 60.179 50.000 1.45 0.00 0.00 3.55
403 404 1.808411 TAAAGGAAGAGCGGCAACTG 58.192 50.000 1.45 0.00 0.00 3.16
404 405 2.789409 ATAAAGGAAGAGCGGCAACT 57.211 45.000 1.45 0.00 0.00 3.16
405 406 3.877508 ACATATAAAGGAAGAGCGGCAAC 59.122 43.478 1.45 0.00 0.00 4.17
406 407 4.150897 ACATATAAAGGAAGAGCGGCAA 57.849 40.909 1.45 0.00 0.00 4.52
407 408 3.838244 ACATATAAAGGAAGAGCGGCA 57.162 42.857 1.45 0.00 0.00 5.69
408 409 4.884247 AGTACATATAAAGGAAGAGCGGC 58.116 43.478 0.00 0.00 0.00 6.53
409 410 6.085555 TGAGTACATATAAAGGAAGAGCGG 57.914 41.667 0.00 0.00 0.00 5.52
410 411 8.594881 AAATGAGTACATATAAAGGAAGAGCG 57.405 34.615 0.00 0.00 35.50 5.03
411 412 8.704234 CGAAATGAGTACATATAAAGGAAGAGC 58.296 37.037 0.00 0.00 35.50 4.09
412 413 9.751542 ACGAAATGAGTACATATAAAGGAAGAG 57.248 33.333 0.00 0.00 35.50 2.85
416 417 9.878667 TGAAACGAAATGAGTACATATAAAGGA 57.121 29.630 0.00 0.00 35.50 3.36
435 436 9.697250 CAAGAACGCTTTTATATTATGAAACGA 57.303 29.630 15.63 0.00 30.14 3.85
436 437 9.697250 TCAAGAACGCTTTTATATTATGAAACG 57.303 29.630 10.98 10.98 30.14 3.60
439 440 9.982291 GTGTCAAGAACGCTTTTATATTATGAA 57.018 29.630 0.00 0.00 35.42 2.57
440 441 9.378551 AGTGTCAAGAACGCTTTTATATTATGA 57.621 29.630 0.00 0.00 46.62 2.15
447 448 9.180678 CAATTTTAGTGTCAAGAACGCTTTTAT 57.819 29.630 0.00 0.00 46.62 1.40
448 449 7.646130 CCAATTTTAGTGTCAAGAACGCTTTTA 59.354 33.333 0.00 0.00 46.62 1.52
449 450 6.475402 CCAATTTTAGTGTCAAGAACGCTTTT 59.525 34.615 0.00 0.00 46.62 2.27
450 451 5.977129 CCAATTTTAGTGTCAAGAACGCTTT 59.023 36.000 0.00 0.00 46.62 3.51
451 452 5.298276 TCCAATTTTAGTGTCAAGAACGCTT 59.702 36.000 0.00 0.00 46.62 4.68
453 454 5.103290 TCCAATTTTAGTGTCAAGAACGC 57.897 39.130 0.00 0.00 38.74 4.84
454 455 6.072728 TCCATCCAATTTTAGTGTCAAGAACG 60.073 38.462 0.00 0.00 0.00 3.95
455 456 7.040409 ACTCCATCCAATTTTAGTGTCAAGAAC 60.040 37.037 0.00 0.00 0.00 3.01
456 457 7.004086 ACTCCATCCAATTTTAGTGTCAAGAA 58.996 34.615 0.00 0.00 0.00 2.52
457 458 6.542821 ACTCCATCCAATTTTAGTGTCAAGA 58.457 36.000 0.00 0.00 0.00 3.02
458 459 6.824305 ACTCCATCCAATTTTAGTGTCAAG 57.176 37.500 0.00 0.00 0.00 3.02
459 460 7.458397 ACTACTCCATCCAATTTTAGTGTCAA 58.542 34.615 0.00 0.00 0.00 3.18
460 461 7.016153 ACTACTCCATCCAATTTTAGTGTCA 57.984 36.000 0.00 0.00 0.00 3.58
461 462 7.923414 AACTACTCCATCCAATTTTAGTGTC 57.077 36.000 0.00 0.00 0.00 3.67
462 463 8.706322 AAAACTACTCCATCCAATTTTAGTGT 57.294 30.769 0.00 0.00 0.00 3.55
473 474 9.087424 GCAAATGAATTTAAAACTACTCCATCC 57.913 33.333 0.00 0.00 0.00 3.51
474 475 9.638239 TGCAAATGAATTTAAAACTACTCCATC 57.362 29.630 0.00 0.00 0.00 3.51
476 477 9.995003 AATGCAAATGAATTTAAAACTACTCCA 57.005 25.926 0.00 0.00 0.00 3.86
480 481 9.745323 GCTGAATGCAAATGAATTTAAAACTAC 57.255 29.630 0.00 0.00 42.31 2.73
481 482 9.709495 AGCTGAATGCAAATGAATTTAAAACTA 57.291 25.926 0.00 0.00 45.94 2.24
482 483 8.500773 CAGCTGAATGCAAATGAATTTAAAACT 58.499 29.630 8.42 0.00 45.94 2.66
483 484 7.269724 GCAGCTGAATGCAAATGAATTTAAAAC 59.730 33.333 20.43 0.00 45.77 2.43
484 485 7.299586 GCAGCTGAATGCAAATGAATTTAAAA 58.700 30.769 20.43 0.00 45.77 1.52
485 486 6.833839 GCAGCTGAATGCAAATGAATTTAAA 58.166 32.000 20.43 0.00 45.77 1.52
486 487 6.411630 GCAGCTGAATGCAAATGAATTTAA 57.588 33.333 20.43 0.00 45.77 1.52
527 528 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
528 529 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
529 530 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
532 533 2.416260 GCGTACGTCAGGGGATCC 59.584 66.667 17.90 1.92 0.00 3.36
533 534 2.416260 GGCGTACGTCAGGGGATC 59.584 66.667 16.32 0.00 0.00 3.36
534 535 3.152400 GGGCGTACGTCAGGGGAT 61.152 66.667 22.92 0.00 0.00 3.85
590 591 2.972505 GGCCCACACACTGACGTG 60.973 66.667 0.00 0.00 46.63 4.49
591 592 4.602259 CGGCCCACACACTGACGT 62.602 66.667 0.00 0.00 0.00 4.34
592 593 3.215597 TACGGCCCACACACTGACG 62.216 63.158 0.00 0.00 0.00 4.35
593 594 1.666872 GTACGGCCCACACACTGAC 60.667 63.158 0.00 0.00 0.00 3.51
594 595 2.738480 GTACGGCCCACACACTGA 59.262 61.111 0.00 0.00 0.00 3.41
595 596 2.736995 CGTACGGCCCACACACTG 60.737 66.667 7.57 0.00 0.00 3.66
596 597 3.216944 GACGTACGGCCCACACACT 62.217 63.158 21.06 0.00 0.00 3.55
597 598 2.735857 GACGTACGGCCCACACAC 60.736 66.667 21.06 0.00 0.00 3.82
598 599 3.215597 CTGACGTACGGCCCACACA 62.216 63.158 20.48 0.00 0.00 3.72
599 600 2.431942 CTGACGTACGGCCCACAC 60.432 66.667 20.48 1.76 0.00 3.82
600 601 2.598099 TCTGACGTACGGCCCACA 60.598 61.111 20.48 9.53 0.00 4.17
601 602 2.126189 GTCTGACGTACGGCCCAC 60.126 66.667 20.48 11.37 0.00 4.61
602 603 3.740397 CGTCTGACGTACGGCCCA 61.740 66.667 20.48 12.43 36.74 5.36
603 604 3.434319 TCGTCTGACGTACGGCCC 61.434 66.667 27.16 8.13 43.14 5.80
604 605 2.202401 GTCGTCTGACGTACGGCC 60.202 66.667 27.16 10.81 43.14 6.13
605 606 2.202401 GGTCGTCTGACGTACGGC 60.202 66.667 27.16 18.72 46.49 5.68
606 607 2.482374 GGGTCGTCTGACGTACGG 59.518 66.667 27.16 1.50 46.49 4.02
607 608 2.097160 CGGGTCGTCTGACGTACG 59.903 66.667 27.16 23.69 46.49 3.67
608 609 2.202401 GCGGGTCGTCTGACGTAC 60.202 66.667 27.16 21.99 46.49 3.67
609 610 3.792047 CGCGGGTCGTCTGACGTA 61.792 66.667 27.16 13.11 46.49 3.57
619 620 4.754667 GAACCAGGGACGCGGGTC 62.755 72.222 23.30 23.30 42.66 4.46
626 627 4.717313 GGGGCGTGAACCAGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
641 642 2.994995 GTTTCCTTTGCCCGGGGG 60.995 66.667 25.28 15.52 38.57 5.40
642 643 1.977009 GAGTTTCCTTTGCCCGGGG 60.977 63.158 25.28 9.31 0.00 5.73
643 644 2.332654 CGAGTTTCCTTTGCCCGGG 61.333 63.158 19.09 19.09 0.00 5.73
644 645 2.332654 CCGAGTTTCCTTTGCCCGG 61.333 63.158 0.00 0.00 0.00 5.73
645 646 2.332654 CCCGAGTTTCCTTTGCCCG 61.333 63.158 0.00 0.00 0.00 6.13
660 661 0.443869 CGTGAAGATTGAGCAACCCG 59.556 55.000 0.00 0.00 0.00 5.28
666 667 3.422343 CGAAGAACACGTGAAGATTGAGC 60.422 47.826 25.01 1.31 0.00 4.26
706 976 1.755393 GAAGGAGACGTGGTGGTGGT 61.755 60.000 0.00 0.00 0.00 4.16
707 977 1.004918 GAAGGAGACGTGGTGGTGG 60.005 63.158 0.00 0.00 0.00 4.61
708 978 0.600255 GTGAAGGAGACGTGGTGGTG 60.600 60.000 0.00 0.00 0.00 4.17
709 979 0.759436 AGTGAAGGAGACGTGGTGGT 60.759 55.000 0.00 0.00 0.00 4.16
710 980 0.038159 GAGTGAAGGAGACGTGGTGG 60.038 60.000 0.00 0.00 0.00 4.61
711 981 0.387367 CGAGTGAAGGAGACGTGGTG 60.387 60.000 0.00 0.00 0.00 4.17
758 1029 4.765970 TCCATGGCTGGCCTCCCT 62.766 66.667 6.96 0.00 42.80 4.20
759 1030 4.201122 CTCCATGGCTGGCCTCCC 62.201 72.222 6.96 4.59 42.80 4.30
760 1031 4.201122 CCTCCATGGCTGGCCTCC 62.201 72.222 6.96 5.92 42.80 4.30
761 1032 2.459086 ATCCTCCATGGCTGGCCTC 61.459 63.158 6.96 0.00 42.80 4.70
762 1033 2.369291 ATCCTCCATGGCTGGCCT 60.369 61.111 6.96 0.22 42.80 5.19
791 1062 3.706373 GGGAGGGAGAAGCACGCA 61.706 66.667 0.00 0.00 0.00 5.24
792 1063 2.860972 GAAGGGAGGGAGAAGCACGC 62.861 65.000 0.00 0.00 0.00 5.34
793 1064 1.219393 GAAGGGAGGGAGAAGCACG 59.781 63.158 0.00 0.00 0.00 5.34
794 1065 1.604915 GGAAGGGAGGGAGAAGCAC 59.395 63.158 0.00 0.00 0.00 4.40
906 1427 4.497984 TGCGGTGTGGCTGTGGTT 62.498 61.111 0.00 0.00 0.00 3.67
930 1451 2.158914 TGACGATGATGGATGGTGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
967 1498 3.382832 CTCGTCTCTTGGCCGGGT 61.383 66.667 2.18 0.00 0.00 5.28
1005 1546 2.977178 CTCTTGCTCTCCACCGCT 59.023 61.111 0.00 0.00 0.00 5.52
1342 1892 4.796231 CGTCTTGTCCGCCGGGAG 62.796 72.222 1.90 0.00 44.97 4.30
1469 2019 4.473520 AGTCCTTGATGGCCGCGG 62.474 66.667 24.05 24.05 35.26 6.46
1470 2020 2.892425 GAGTCCTTGATGGCCGCG 60.892 66.667 0.00 0.00 35.26 6.46
1478 2028 1.075698 ACTTCTCCTCCGAGTCCTTGA 59.924 52.381 0.00 0.00 37.40 3.02
1574 2128 4.351938 TTGCTCCGTCCGTCCGTG 62.352 66.667 0.00 0.00 0.00 4.94
1602 2156 2.069273 ACAAACGATCTCTTGAAGCGG 58.931 47.619 9.82 0.00 0.00 5.52
1648 2211 6.956299 TCTTTCCCTACTCGAATTTTTACG 57.044 37.500 0.00 0.00 0.00 3.18
1661 2224 5.500546 TCCTTCCTTCTTTCTTTCCCTAC 57.499 43.478 0.00 0.00 0.00 3.18
1677 2244 7.602265 GCTTACTATGATCTCAATCTTCCTTCC 59.398 40.741 0.00 0.00 32.75 3.46
1681 2248 6.013812 AGGGCTTACTATGATCTCAATCTTCC 60.014 42.308 0.00 0.00 32.75 3.46
1682 2249 7.003402 AGGGCTTACTATGATCTCAATCTTC 57.997 40.000 0.00 0.00 32.75 2.87
1692 2259 7.775053 TCAAACAAAAAGGGCTTACTATGAT 57.225 32.000 0.00 0.00 0.00 2.45
1716 2286 8.961294 TCAAAAGAATTTGTCAACCAATCAAT 57.039 26.923 1.69 0.00 45.02 2.57
1720 2290 8.645110 AGAGATCAAAAGAATTTGTCAACCAAT 58.355 29.630 0.00 0.00 45.02 3.16
1724 2299 6.087291 CGCAGAGATCAAAAGAATTTGTCAAC 59.913 38.462 0.00 0.00 45.02 3.18
1743 2318 2.279985 ATGATGAGCCGCGCAGAG 60.280 61.111 8.75 0.00 0.00 3.35
1753 2328 2.924185 GGCGACCCATGATGATGAG 58.076 57.895 0.00 0.00 0.00 2.90
1766 2342 1.066858 TGAACTCAATCTCTGGGCGAC 60.067 52.381 0.00 0.00 0.00 5.19
1771 2347 3.620374 CGGTTCATGAACTCAATCTCTGG 59.380 47.826 31.81 8.55 40.94 3.86
1780 2365 8.879759 TCAAGTTATTATTCGGTTCATGAACTC 58.120 33.333 31.81 22.29 40.94 3.01
1823 2408 9.555727 AAGAATTGTTGTTTCAAGCTAGTACTA 57.444 29.630 1.89 1.89 0.00 1.82
1825 2410 8.560374 AGAAGAATTGTTGTTTCAAGCTAGTAC 58.440 33.333 0.00 0.00 0.00 2.73
1835 2420 5.915196 CCGGAGAAAGAAGAATTGTTGTTTC 59.085 40.000 22.84 22.84 39.06 2.78
1844 2429 1.275291 TGACGCCGGAGAAAGAAGAAT 59.725 47.619 13.83 0.00 0.00 2.40
1851 2436 2.029964 GTGGTGACGCCGGAGAAA 59.970 61.111 13.83 0.00 41.21 2.52
1888 2473 8.618702 TTTTTACATTTCGGTTCATGGTAGTA 57.381 30.769 0.00 0.00 0.00 1.82
1889 2474 7.513371 TTTTTACATTTCGGTTCATGGTAGT 57.487 32.000 0.00 0.00 0.00 2.73
1921 2531 6.673839 TCGGGGATTGGTTTCTTAATTTTT 57.326 33.333 0.00 0.00 0.00 1.94
1926 2536 5.652994 CAATTCGGGGATTGGTTTCTTAA 57.347 39.130 0.00 0.00 34.20 1.85
1943 2553 1.000060 TGAACTGCTGCTTGCCAATTC 60.000 47.619 0.00 2.83 42.00 2.17
2003 2619 2.151502 TTTGACAAGTTGGGCTCCAA 57.848 45.000 7.96 2.84 41.69 3.53
2004 2620 2.151502 TTTTGACAAGTTGGGCTCCA 57.848 45.000 7.96 0.00 0.00 3.86
2010 2631 3.244181 CCATCCCCTTTTTGACAAGTTGG 60.244 47.826 7.96 0.00 0.00 3.77
2030 2655 3.182263 CTCCCACCACAACCCCCA 61.182 66.667 0.00 0.00 0.00 4.96
2135 2772 3.351416 GCCAACGGACGGACAACC 61.351 66.667 0.00 0.00 0.00 3.77
2136 2773 3.351416 GGCCAACGGACGGACAAC 61.351 66.667 0.00 0.00 0.00 3.32
2137 2774 4.629523 GGGCCAACGGACGGACAA 62.630 66.667 4.39 0.00 30.57 3.18
2252 2889 2.038975 CGTTGGAGGAGGGGAGGA 59.961 66.667 0.00 0.00 0.00 3.71
2257 2894 2.347490 CACCACGTTGGAGGAGGG 59.653 66.667 10.46 0.00 40.96 4.30
2324 2967 0.606401 CACTCTTCCGTTGCCCATGT 60.606 55.000 0.00 0.00 0.00 3.21
2325 2968 0.606401 ACACTCTTCCGTTGCCCATG 60.606 55.000 0.00 0.00 0.00 3.66
2327 2970 1.227823 CACACTCTTCCGTTGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
2328 2971 1.966451 CCACACTCTTCCGTTGCCC 60.966 63.158 0.00 0.00 0.00 5.36
2329 2972 0.321653 ATCCACACTCTTCCGTTGCC 60.322 55.000 0.00 0.00 0.00 4.52
2333 2976 1.983224 CCCATCCACACTCTTCCGT 59.017 57.895 0.00 0.00 0.00 4.69
2397 3062 3.414193 CCTCCAGCCCCAGATGCA 61.414 66.667 0.00 0.00 0.00 3.96
2399 3064 2.593978 CACCTCCAGCCCCAGATG 59.406 66.667 0.00 0.00 0.00 2.90
2400 3065 3.415087 GCACCTCCAGCCCCAGAT 61.415 66.667 0.00 0.00 0.00 2.90
2401 3066 4.664267 AGCACCTCCAGCCCCAGA 62.664 66.667 0.00 0.00 0.00 3.86
2402 3067 2.720144 AAAAGCACCTCCAGCCCCAG 62.720 60.000 0.00 0.00 0.00 4.45
2403 3068 2.713531 GAAAAGCACCTCCAGCCCCA 62.714 60.000 0.00 0.00 0.00 4.96
2516 3204 0.250770 AAGCAACCGGTTCCTTCCTC 60.251 55.000 18.04 1.56 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.