Multiple sequence alignment - TraesCS4B01G297000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G297000 chr4B 100.000 3729 0 0 1 3729 582558039 582561767 0.000000e+00 6887.0
1 TraesCS4B01G297000 chr5A 99.038 1143 9 2 1 1141 487758852 487759994 0.000000e+00 2049.0
2 TraesCS4B01G297000 chr5A 99.038 1143 9 2 1 1141 487760284 487761426 0.000000e+00 2049.0
3 TraesCS4B01G297000 chr5A 98.775 1143 12 2 1 1141 487757421 487758563 0.000000e+00 2032.0
4 TraesCS4B01G297000 chr5A 98.688 1143 13 2 1 1141 487761715 487762857 0.000000e+00 2026.0
5 TraesCS4B01G297000 chr5A 82.599 431 56 10 39 459 595402164 595401743 2.740000e-96 363.0
6 TraesCS4B01G297000 chr6B 97.811 1142 23 2 1 1141 687877330 687878470 0.000000e+00 1969.0
7 TraesCS4B01G297000 chr6B 96.875 32 1 0 1131 1162 24795573 24795604 2.000000e-03 54.7
8 TraesCS4B01G297000 chr6B 100.000 28 0 0 1132 1159 713087965 713087938 7.000000e-03 52.8
9 TraesCS4B01G297000 chr1B 96.419 1145 34 6 1 1141 48483795 48484936 0.000000e+00 1881.0
10 TraesCS4B01G297000 chr4A 81.149 1793 204 78 1239 2988 4845153 4843452 0.000000e+00 1315.0
11 TraesCS4B01G297000 chr4A 83.135 421 52 8 49 459 596981201 596980790 2.120000e-97 366.0
12 TraesCS4B01G297000 chr4A 79.052 401 48 13 2595 2991 4843185 4842817 3.720000e-60 243.0
13 TraesCS4B01G297000 chr4D 82.415 1615 126 72 1300 2846 465605317 465606841 0.000000e+00 1264.0
14 TraesCS4B01G297000 chr4D 81.728 602 81 21 3150 3727 465607591 465608187 3.370000e-130 475.0
15 TraesCS4B01G297000 chr3D 83.761 702 85 14 13 702 275776717 275776033 4.060000e-179 638.0
16 TraesCS4B01G297000 chr7A 82.679 560 71 10 39 590 59603591 59603050 1.210000e-129 473.0
17 TraesCS4B01G297000 chr7A 83.371 445 54 14 706 1143 59602798 59602367 9.710000e-106 394.0
18 TraesCS4B01G297000 chr7A 82.472 445 57 16 705 1141 648509163 648508732 1.640000e-98 370.0
19 TraesCS4B01G297000 chr7D 83.820 445 53 13 706 1143 620473988 620474420 4.480000e-109 405.0
20 TraesCS4B01G297000 chr7D 87.288 236 28 2 468 702 620473793 620474027 6.140000e-68 268.0
21 TraesCS4B01G297000 chr7B 81.960 449 57 19 706 1143 668982980 668982545 3.540000e-95 359.0
22 TraesCS4B01G297000 chr6A 97.059 34 1 0 1129 1162 548664177 548664210 1.450000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G297000 chr4B 582558039 582561767 3728 False 6887.0 6887 100.00000 1 3729 1 chr4B.!!$F1 3728
1 TraesCS4B01G297000 chr5A 487757421 487762857 5436 False 2039.0 2049 98.88475 1 1141 4 chr5A.!!$F1 1140
2 TraesCS4B01G297000 chr6B 687877330 687878470 1140 False 1969.0 1969 97.81100 1 1141 1 chr6B.!!$F2 1140
3 TraesCS4B01G297000 chr1B 48483795 48484936 1141 False 1881.0 1881 96.41900 1 1141 1 chr1B.!!$F1 1140
4 TraesCS4B01G297000 chr4A 4842817 4845153 2336 True 779.0 1315 80.10050 1239 2991 2 chr4A.!!$R2 1752
5 TraesCS4B01G297000 chr4D 465605317 465608187 2870 False 869.5 1264 82.07150 1300 3727 2 chr4D.!!$F1 2427
6 TraesCS4B01G297000 chr3D 275776033 275776717 684 True 638.0 638 83.76100 13 702 1 chr3D.!!$R1 689
7 TraesCS4B01G297000 chr7A 59602367 59603591 1224 True 433.5 473 83.02500 39 1143 2 chr7A.!!$R2 1104
8 TraesCS4B01G297000 chr7D 620473793 620474420 627 False 336.5 405 85.55400 468 1143 2 chr7D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 2853 0.545548 CCTGGGGGAGAGTATAGGGC 60.546 65.0 0.0 0.0 33.58 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3023 5433 0.03582 GGCCCGATCAACACCTTGTA 60.036 55.0 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1173 2852 3.796866 CCTGGGGGAGAGTATAGGG 57.203 63.158 0.00 0.00 33.58 3.53
1174 2853 0.545548 CCTGGGGGAGAGTATAGGGC 60.546 65.000 0.00 0.00 33.58 5.19
1175 2854 0.545548 CTGGGGGAGAGTATAGGGCC 60.546 65.000 0.00 0.00 0.00 5.80
1176 2855 1.229561 GGGGGAGAGTATAGGGCCC 60.230 68.421 16.46 16.46 38.08 5.80
1177 2856 4.563166 GGGAGAGTATAGGGCCCC 57.437 66.667 21.43 1.95 32.50 5.80
1178 2857 1.229561 GGGAGAGTATAGGGCCCCC 60.230 68.421 21.43 9.87 32.50 5.40
1179 2858 1.552393 GGAGAGTATAGGGCCCCCA 59.448 63.158 21.43 7.28 38.92 4.96
1180 2859 0.836830 GGAGAGTATAGGGCCCCCAC 60.837 65.000 21.43 14.36 38.92 4.61
1181 2860 0.836830 GAGAGTATAGGGCCCCCACC 60.837 65.000 21.43 4.30 38.92 4.61
1182 2861 1.074014 GAGTATAGGGCCCCCACCA 60.074 63.158 21.43 0.00 38.92 4.17
1183 2862 1.385489 AGTATAGGGCCCCCACCAC 60.385 63.158 21.43 9.92 38.92 4.16
1184 2863 2.039191 TATAGGGCCCCCACCACC 60.039 66.667 21.43 0.00 38.92 4.61
1185 2864 3.742692 TATAGGGCCCCCACCACCC 62.743 68.421 21.43 0.00 44.62 4.61
1213 2892 4.329545 GACCGTGGCCTGGCAGAA 62.330 66.667 22.05 2.04 0.00 3.02
1214 2893 4.643387 ACCGTGGCCTGGCAGAAC 62.643 66.667 22.05 14.00 0.00 3.01
1226 2905 4.038080 CAGAACCGCCCGCCAAAC 62.038 66.667 0.00 0.00 0.00 2.93
1227 2906 4.265056 AGAACCGCCCGCCAAACT 62.265 61.111 0.00 0.00 0.00 2.66
1228 2907 3.733960 GAACCGCCCGCCAAACTC 61.734 66.667 0.00 0.00 0.00 3.01
1229 2908 4.572571 AACCGCCCGCCAAACTCA 62.573 61.111 0.00 0.00 0.00 3.41
1230 2909 4.572571 ACCGCCCGCCAAACTCAA 62.573 61.111 0.00 0.00 0.00 3.02
1231 2910 4.038080 CCGCCCGCCAAACTCAAC 62.038 66.667 0.00 0.00 0.00 3.18
1232 2911 4.038080 CGCCCGCCAAACTCAACC 62.038 66.667 0.00 0.00 0.00 3.77
1233 2912 3.680786 GCCCGCCAAACTCAACCC 61.681 66.667 0.00 0.00 0.00 4.11
1234 2913 2.989253 CCCGCCAAACTCAACCCC 60.989 66.667 0.00 0.00 0.00 4.95
1235 2914 3.361977 CCGCCAAACTCAACCCCG 61.362 66.667 0.00 0.00 0.00 5.73
1236 2915 2.281208 CGCCAAACTCAACCCCGA 60.281 61.111 0.00 0.00 0.00 5.14
1237 2916 1.894756 CGCCAAACTCAACCCCGAA 60.895 57.895 0.00 0.00 0.00 4.30
1238 2917 1.448922 CGCCAAACTCAACCCCGAAA 61.449 55.000 0.00 0.00 0.00 3.46
1239 2918 0.031585 GCCAAACTCAACCCCGAAAC 59.968 55.000 0.00 0.00 0.00 2.78
1240 2919 0.671796 CCAAACTCAACCCCGAAACC 59.328 55.000 0.00 0.00 0.00 3.27
1241 2920 0.671796 CAAACTCAACCCCGAAACCC 59.328 55.000 0.00 0.00 0.00 4.11
1242 2921 0.468585 AAACTCAACCCCGAAACCCC 60.469 55.000 0.00 0.00 0.00 4.95
1306 2994 1.160989 TGCAACAAATACACGCCGAT 58.839 45.000 0.00 0.00 0.00 4.18
1307 2995 1.135831 TGCAACAAATACACGCCGATG 60.136 47.619 0.00 0.00 0.00 3.84
1402 3090 3.743584 GCCATCTATCCATCCATCCATCG 60.744 52.174 0.00 0.00 0.00 3.84
1412 3100 0.387202 CCATCCATCGCTTCTCGTCT 59.613 55.000 0.00 0.00 39.67 4.18
1474 3656 2.161609 CGCGAAACAGAAATTAGGCCTT 59.838 45.455 12.58 0.00 0.00 4.35
1495 3677 2.030412 CAGCTGTACACGCCCACA 59.970 61.111 5.25 0.00 0.00 4.17
1583 3774 0.666274 CGCACACACACATACCTCGT 60.666 55.000 0.00 0.00 0.00 4.18
1596 3787 3.862402 CTCGTCGGACCTCGTCGG 61.862 72.222 1.91 0.00 46.82 4.79
1626 3817 2.515071 GGAGATCGGCATGGGAGCT 61.515 63.158 0.00 0.00 31.86 4.09
1700 3894 1.003959 TGCTGCGCCAGTACATGAA 60.004 52.632 4.18 0.00 33.43 2.57
1704 3898 0.391130 TGCGCCAGTACATGAAGGAC 60.391 55.000 4.18 0.00 0.00 3.85
1838 4044 2.202797 CATGGTCAGGGACTCGCG 60.203 66.667 0.00 0.00 34.60 5.87
1842 4048 4.415332 GTCAGGGACTCGCGCGAA 62.415 66.667 33.99 14.50 34.60 4.70
1851 4057 2.774951 CTCGCGCGAAAGGTACGTG 61.775 63.158 33.99 14.75 42.83 4.49
1871 4077 4.903355 TGCGTGCGTGCAAAGTGC 62.903 61.111 0.00 0.00 43.02 4.40
1882 4088 2.584492 GCAAAGTGCAAACTCCAACT 57.416 45.000 0.00 0.00 44.26 3.16
1883 4089 2.892374 GCAAAGTGCAAACTCCAACTT 58.108 42.857 0.00 0.00 44.26 2.66
1884 4090 2.860136 GCAAAGTGCAAACTCCAACTTC 59.140 45.455 0.00 0.00 44.26 3.01
1885 4091 3.108144 CAAAGTGCAAACTCCAACTTCG 58.892 45.455 0.00 0.00 0.00 3.79
1886 4092 2.325583 AGTGCAAACTCCAACTTCGA 57.674 45.000 0.00 0.00 0.00 3.71
1887 4093 2.851195 AGTGCAAACTCCAACTTCGAT 58.149 42.857 0.00 0.00 0.00 3.59
1888 4094 2.808543 AGTGCAAACTCCAACTTCGATC 59.191 45.455 0.00 0.00 0.00 3.69
1889 4095 1.798223 TGCAAACTCCAACTTCGATCG 59.202 47.619 9.36 9.36 0.00 3.69
1890 4096 1.798813 GCAAACTCCAACTTCGATCGT 59.201 47.619 15.94 0.00 0.00 3.73
1891 4097 2.411547 GCAAACTCCAACTTCGATCGTG 60.412 50.000 15.94 11.74 0.00 4.35
1892 4098 1.429463 AACTCCAACTTCGATCGTGC 58.571 50.000 15.94 0.00 0.00 5.34
1893 4099 0.389948 ACTCCAACTTCGATCGTGCC 60.390 55.000 15.94 0.00 0.00 5.01
1894 4100 0.108615 CTCCAACTTCGATCGTGCCT 60.109 55.000 15.94 0.00 0.00 4.75
1895 4101 0.389817 TCCAACTTCGATCGTGCCTG 60.390 55.000 15.94 8.76 0.00 4.85
1896 4102 1.421485 CAACTTCGATCGTGCCTGC 59.579 57.895 15.94 0.00 0.00 4.85
1897 4103 1.741770 AACTTCGATCGTGCCTGCC 60.742 57.895 15.94 0.00 0.00 4.85
1898 4104 2.172483 AACTTCGATCGTGCCTGCCT 62.172 55.000 15.94 0.00 0.00 4.75
1899 4105 2.125552 TTCGATCGTGCCTGCCTG 60.126 61.111 15.94 0.00 0.00 4.85
1900 4106 4.819761 TCGATCGTGCCTGCCTGC 62.820 66.667 15.94 0.00 0.00 4.85
1902 4108 4.783621 GATCGTGCCTGCCTGCCA 62.784 66.667 0.00 0.00 0.00 4.92
1903 4109 4.790962 ATCGTGCCTGCCTGCCAG 62.791 66.667 0.00 0.00 41.41 4.85
1906 4112 4.648626 GTGCCTGCCTGCCAGTCA 62.649 66.667 0.00 0.00 40.06 3.41
1907 4113 3.654143 TGCCTGCCTGCCAGTCAT 61.654 61.111 0.00 0.00 40.06 3.06
1914 4120 4.100084 CTGCCAGTCATGCCGGGA 62.100 66.667 2.18 0.00 0.00 5.14
1931 4138 0.959372 GGAGACCGGAGAACGTCAGA 60.959 60.000 9.46 0.00 42.24 3.27
1954 4169 1.146152 TGTCGGGGGTTCTTGGAAAAT 59.854 47.619 0.00 0.00 0.00 1.82
1955 4170 2.375845 TGTCGGGGGTTCTTGGAAAATA 59.624 45.455 0.00 0.00 0.00 1.40
1956 4171 2.751259 GTCGGGGGTTCTTGGAAAATAC 59.249 50.000 0.00 0.00 0.00 1.89
1957 4172 1.741145 CGGGGGTTCTTGGAAAATACG 59.259 52.381 0.00 0.00 0.00 3.06
1958 4173 1.475280 GGGGGTTCTTGGAAAATACGC 59.525 52.381 0.00 0.00 0.00 4.42
1959 4174 2.443416 GGGGTTCTTGGAAAATACGCT 58.557 47.619 0.00 0.00 0.00 5.07
1960 4175 2.422479 GGGGTTCTTGGAAAATACGCTC 59.578 50.000 0.00 0.00 0.00 5.03
1961 4176 3.344515 GGGTTCTTGGAAAATACGCTCT 58.655 45.455 0.00 0.00 0.00 4.09
1962 4177 3.374367 GGGTTCTTGGAAAATACGCTCTC 59.626 47.826 0.00 0.00 0.00 3.20
1964 4179 4.254492 GTTCTTGGAAAATACGCTCTCCT 58.746 43.478 0.00 0.00 0.00 3.69
1966 4181 4.906618 TCTTGGAAAATACGCTCTCCTTT 58.093 39.130 0.00 0.00 0.00 3.11
1968 4188 5.768164 TCTTGGAAAATACGCTCTCCTTTTT 59.232 36.000 0.00 0.00 0.00 1.94
1975 4195 2.508526 ACGCTCTCCTTTTTGATGCTT 58.491 42.857 0.00 0.00 0.00 3.91
1981 4201 1.812571 TCCTTTTTGATGCTTCCGCTC 59.187 47.619 0.00 0.00 36.97 5.03
1986 4206 1.896220 TTGATGCTTCCGCTCTTGTT 58.104 45.000 0.00 0.00 36.97 2.83
1987 4207 2.760634 TGATGCTTCCGCTCTTGTTA 57.239 45.000 0.00 0.00 36.97 2.41
1988 4208 3.052455 TGATGCTTCCGCTCTTGTTAA 57.948 42.857 0.00 0.00 36.97 2.01
1989 4209 3.609853 TGATGCTTCCGCTCTTGTTAAT 58.390 40.909 0.00 0.00 36.97 1.40
1994 4214 6.509418 TGCTTCCGCTCTTGTTAATTAATT 57.491 33.333 5.89 5.89 36.97 1.40
2006 4226 2.265589 AATTAATTAGGACGGGGCCG 57.734 50.000 0.00 0.00 46.03 6.13
2035 4255 0.872021 CCGCTGACCATCTTCTACGC 60.872 60.000 0.00 0.00 0.00 4.42
2204 4430 3.042842 TACGGATCGCGCGACACTT 62.043 57.895 37.37 24.94 0.00 3.16
2205 4431 2.531927 TACGGATCGCGCGACACTTT 62.532 55.000 37.37 20.06 0.00 2.66
2206 4432 2.395690 GGATCGCGCGACACTTTG 59.604 61.111 37.37 0.30 0.00 2.77
2207 4433 2.380410 GGATCGCGCGACACTTTGT 61.380 57.895 37.37 18.29 0.00 2.83
2208 4434 1.225475 GATCGCGCGACACTTTGTG 60.225 57.895 37.37 0.00 39.75 3.33
2209 4435 2.548587 GATCGCGCGACACTTTGTGG 62.549 60.000 37.37 0.00 37.94 4.17
2210 4436 3.636043 CGCGCGACACTTTGTGGT 61.636 61.111 28.94 0.00 37.94 4.16
2211 4437 2.304401 CGCGCGACACTTTGTGGTA 61.304 57.895 28.94 0.00 37.94 3.25
2212 4438 1.823260 CGCGCGACACTTTGTGGTAA 61.823 55.000 28.94 0.00 37.94 2.85
2213 4439 0.110823 GCGCGACACTTTGTGGTAAG 60.111 55.000 12.10 0.00 37.94 2.34
2214 4440 1.214367 CGCGACACTTTGTGGTAAGT 58.786 50.000 0.00 0.00 38.87 2.24
2216 4442 2.991190 CGCGACACTTTGTGGTAAGTAT 59.009 45.455 0.00 0.00 36.24 2.12
2218 4444 3.991773 GCGACACTTTGTGGTAAGTATCA 59.008 43.478 2.72 0.00 36.24 2.15
2219 4445 4.449743 GCGACACTTTGTGGTAAGTATCAA 59.550 41.667 2.72 0.00 36.24 2.57
2220 4446 5.049954 GCGACACTTTGTGGTAAGTATCAAA 60.050 40.000 2.72 0.00 36.24 2.69
2221 4447 6.512091 GCGACACTTTGTGGTAAGTATCAAAA 60.512 38.462 2.72 0.00 36.24 2.44
2222 4448 7.581476 CGACACTTTGTGGTAAGTATCAAAAT 58.419 34.615 2.72 0.00 36.24 1.82
2241 4467 6.938030 TCAAAATTAAACTCCATACTGTCCGT 59.062 34.615 0.00 0.00 0.00 4.69
2242 4468 6.737254 AAATTAAACTCCATACTGTCCGTG 57.263 37.500 0.00 0.00 0.00 4.94
2243 4469 2.762535 AAACTCCATACTGTCCGTGG 57.237 50.000 0.00 0.00 0.00 4.94
2244 4470 1.933021 AACTCCATACTGTCCGTGGA 58.067 50.000 8.57 8.57 39.61 4.02
2245 4471 1.933021 ACTCCATACTGTCCGTGGAA 58.067 50.000 9.73 0.00 41.21 3.53
2246 4472 2.467880 ACTCCATACTGTCCGTGGAAT 58.532 47.619 9.73 0.00 41.21 3.01
2247 4473 2.431057 ACTCCATACTGTCCGTGGAATC 59.569 50.000 9.73 0.00 41.21 2.52
2248 4474 1.407618 TCCATACTGTCCGTGGAATCG 59.592 52.381 6.93 0.00 38.99 3.34
2260 4486 1.144936 GGAATCGGGGAGCTGACAG 59.855 63.158 0.00 0.00 0.00 3.51
2265 4491 1.376037 CGGGGAGCTGACAGAAACC 60.376 63.158 6.65 5.61 0.00 3.27
2270 4496 1.517242 GAGCTGACAGAAACCTGTGG 58.483 55.000 6.65 0.00 44.34 4.17
2272 4498 0.819259 GCTGACAGAAACCTGTGGCA 60.819 55.000 6.65 0.00 44.34 4.92
2277 4503 1.228245 AGAAACCTGTGGCATGCGT 60.228 52.632 12.44 0.00 0.00 5.24
2278 4504 1.210155 GAAACCTGTGGCATGCGTC 59.790 57.895 12.44 7.69 0.00 5.19
2317 4551 3.077556 AGGAAGGCGTCGCTCCAT 61.078 61.111 23.04 9.14 0.00 3.41
2328 4562 0.032515 TCGCTCCATAGGTTCCTGGA 60.033 55.000 1.12 0.00 39.23 3.86
2347 4581 0.903942 AGAAGAGGAAGAGCAGGCTG 59.096 55.000 10.94 10.94 0.00 4.85
2497 4746 3.839432 CGAGCCGGGGAGAGGAAC 61.839 72.222 2.18 0.00 0.00 3.62
2510 4759 3.416156 GAGAGGAACAAATCACTGCCTT 58.584 45.455 0.00 0.00 0.00 4.35
2511 4760 3.152341 AGAGGAACAAATCACTGCCTTG 58.848 45.455 0.00 0.00 0.00 3.61
2530 4779 1.472878 TGCTGCTTCTCCACGTAGTAG 59.527 52.381 0.00 0.00 41.61 2.57
2533 4782 3.315749 GCTGCTTCTCCACGTAGTAGTAT 59.684 47.826 0.00 0.00 41.61 2.12
2534 4783 4.514441 GCTGCTTCTCCACGTAGTAGTATA 59.486 45.833 0.00 0.00 41.61 1.47
2535 4784 5.181622 GCTGCTTCTCCACGTAGTAGTATAT 59.818 44.000 0.00 0.00 41.61 0.86
2536 4785 6.370994 GCTGCTTCTCCACGTAGTAGTATATA 59.629 42.308 0.00 0.00 41.61 0.86
2537 4786 7.623925 GCTGCTTCTCCACGTAGTAGTATATAC 60.624 44.444 4.60 4.60 41.61 1.47
2539 4788 7.387122 TGCTTCTCCACGTAGTAGTATATACAG 59.613 40.741 15.18 0.15 41.61 2.74
2542 4791 9.698309 TTCTCCACGTAGTAGTATATACAGTAC 57.302 37.037 15.18 14.59 41.61 2.73
2543 4792 9.083422 TCTCCACGTAGTAGTATATACAGTACT 57.917 37.037 15.18 15.29 41.61 2.73
2588 4837 7.040340 TCCTTGATTGTTGCCGTTTTTATCTTA 60.040 33.333 0.00 0.00 0.00 2.10
2631 4880 1.326548 GCGTCAGGGTAATTAACTGCG 59.673 52.381 19.13 19.13 36.00 5.18
2653 4902 3.493503 GTGGCGCCGGCTAAATATATATC 59.506 47.826 26.68 0.49 39.81 1.63
2654 4903 3.064931 GGCGCCGGCTAAATATATATCC 58.935 50.000 26.68 4.14 39.81 2.59
2655 4904 3.244112 GGCGCCGGCTAAATATATATCCT 60.244 47.826 26.68 0.00 39.81 3.24
2656 4905 3.741344 GCGCCGGCTAAATATATATCCTG 59.259 47.826 26.68 3.42 35.83 3.86
2657 4906 4.307432 CGCCGGCTAAATATATATCCTGG 58.693 47.826 26.68 0.00 0.00 4.45
2658 4907 4.642429 GCCGGCTAAATATATATCCTGGG 58.358 47.826 22.15 0.00 0.00 4.45
2659 4908 4.102681 GCCGGCTAAATATATATCCTGGGT 59.897 45.833 22.15 0.00 0.00 4.51
2660 4909 5.397559 GCCGGCTAAATATATATCCTGGGTT 60.398 44.000 22.15 0.00 0.00 4.11
2661 4910 6.183361 GCCGGCTAAATATATATCCTGGGTTA 60.183 42.308 22.15 0.00 0.00 2.85
2662 4911 7.636413 GCCGGCTAAATATATATCCTGGGTTAA 60.636 40.741 22.15 0.00 0.00 2.01
2663 4912 7.931948 CCGGCTAAATATATATCCTGGGTTAAG 59.068 40.741 0.00 0.00 0.00 1.85
2664 4913 8.483758 CGGCTAAATATATATCCTGGGTTAAGT 58.516 37.037 0.00 0.00 0.00 2.24
2730 4979 8.514594 TGTCGAATAAAAGAATTCTTTCATGCT 58.485 29.630 28.87 17.62 44.69 3.79
2731 4980 8.792538 GTCGAATAAAAGAATTCTTTCATGCTG 58.207 33.333 28.87 16.75 44.69 4.41
2732 4981 8.729756 TCGAATAAAAGAATTCTTTCATGCTGA 58.270 29.630 28.87 18.34 44.69 4.26
2733 4982 9.512435 CGAATAAAAGAATTCTTTCATGCTGAT 57.488 29.630 28.87 15.76 44.69 2.90
2735 4984 9.595823 AATAAAAGAATTCTTTCATGCTGATGG 57.404 29.630 28.87 0.00 44.69 3.51
2736 4985 5.593679 AAGAATTCTTTCATGCTGATGGG 57.406 39.130 15.11 0.00 34.08 4.00
2737 4986 4.863548 AGAATTCTTTCATGCTGATGGGA 58.136 39.130 0.88 0.00 34.08 4.37
2813 5069 5.696724 AGCTGTATTAAATGTAGCGATGACC 59.303 40.000 0.00 0.00 39.27 4.02
2912 5322 8.958175 TCGTTGGTTTGTGATATTTTAATGAC 57.042 30.769 0.00 0.00 0.00 3.06
2932 5342 7.621428 ATGACAATATGTGAAAAGTGAGAGG 57.379 36.000 0.00 0.00 0.00 3.69
2933 5343 5.939883 TGACAATATGTGAAAAGTGAGAGGG 59.060 40.000 0.00 0.00 0.00 4.30
2943 5353 0.036010 AGTGAGAGGGCCACATTTCG 60.036 55.000 6.18 0.00 37.01 3.46
2945 5355 1.078143 GAGAGGGCCACATTTCGCT 60.078 57.895 6.18 0.00 0.00 4.93
2962 5372 0.671781 GCTCATGTCTTGTGTCGCCT 60.672 55.000 0.00 0.00 0.00 5.52
2964 5374 0.392706 TCATGTCTTGTGTCGCCTGT 59.607 50.000 0.00 0.00 0.00 4.00
2965 5375 0.792640 CATGTCTTGTGTCGCCTGTC 59.207 55.000 0.00 0.00 0.00 3.51
2968 5378 2.197605 TCTTGTGTCGCCTGTCCGA 61.198 57.895 0.00 0.00 34.40 4.55
2984 5394 1.811266 CGAGTGACTTGGATGGCGG 60.811 63.158 0.00 0.00 0.00 6.13
2991 5401 0.912487 ACTTGGATGGCGGACCCTAA 60.912 55.000 0.00 0.00 33.59 2.69
2992 5402 0.463833 CTTGGATGGCGGACCCTAAC 60.464 60.000 0.00 0.00 33.59 2.34
2994 5404 2.070650 GGATGGCGGACCCTAACCT 61.071 63.158 0.00 0.00 33.59 3.50
2999 5409 2.288025 GCGGACCCTAACCTCCACA 61.288 63.158 0.00 0.00 0.00 4.17
3000 5410 1.595357 CGGACCCTAACCTCCACAC 59.405 63.158 0.00 0.00 0.00 3.82
3001 5411 1.896122 CGGACCCTAACCTCCACACC 61.896 65.000 0.00 0.00 0.00 4.16
3003 5413 1.286248 GACCCTAACCTCCACACCAT 58.714 55.000 0.00 0.00 0.00 3.55
3004 5414 1.633945 GACCCTAACCTCCACACCATT 59.366 52.381 0.00 0.00 0.00 3.16
3005 5415 1.354368 ACCCTAACCTCCACACCATTG 59.646 52.381 0.00 0.00 0.00 2.82
3006 5416 1.340991 CCCTAACCTCCACACCATTGG 60.341 57.143 0.00 0.00 38.10 3.16
3007 5417 1.340991 CCTAACCTCCACACCATTGGG 60.341 57.143 7.78 0.00 37.24 4.12
3012 5422 3.882825 CCACACCATTGGGGCAAA 58.117 55.556 4.39 0.00 40.36 3.68
3015 5425 1.074926 ACACCATTGGGGCAAACCA 60.075 52.632 4.39 0.00 42.91 3.67
3016 5426 1.120795 ACACCATTGGGGCAAACCAG 61.121 55.000 4.39 0.00 42.47 4.00
3017 5427 1.536174 ACCATTGGGGCAAACCAGG 60.536 57.895 7.78 0.00 42.47 4.45
3018 5428 1.229145 CCATTGGGGCAAACCAGGA 60.229 57.895 0.00 0.00 42.47 3.86
3019 5429 0.835543 CCATTGGGGCAAACCAGGAA 60.836 55.000 0.00 0.00 42.47 3.36
3020 5430 1.278537 CATTGGGGCAAACCAGGAAT 58.721 50.000 0.00 0.00 42.47 3.01
3021 5431 1.065998 CATTGGGGCAAACCAGGAATG 60.066 52.381 0.00 0.00 42.47 2.67
3022 5432 0.835543 TTGGGGCAAACCAGGAATGG 60.836 55.000 0.00 0.00 42.47 3.16
3023 5433 1.229177 GGGGCAAACCAGGAATGGT 60.229 57.895 0.00 0.00 45.55 3.55
3024 5434 0.040499 GGGGCAAACCAGGAATGGTA 59.960 55.000 0.00 0.00 42.20 3.25
3025 5435 1.182667 GGGCAAACCAGGAATGGTAC 58.817 55.000 0.00 0.00 42.20 3.34
3026 5436 1.549037 GGGCAAACCAGGAATGGTACA 60.549 52.381 0.00 0.00 42.20 2.90
3027 5437 2.243810 GGCAAACCAGGAATGGTACAA 58.756 47.619 0.00 0.00 42.20 2.41
3028 5438 2.231235 GGCAAACCAGGAATGGTACAAG 59.769 50.000 0.00 0.00 42.20 3.16
3029 5439 4.932555 GGCAAACCAGGAATGGTACAAGG 61.933 52.174 0.00 0.00 42.20 3.61
3039 5449 2.465860 TGGTACAAGGTGTTGATCGG 57.534 50.000 0.00 0.00 37.10 4.18
3040 5450 1.002659 TGGTACAAGGTGTTGATCGGG 59.997 52.381 0.00 0.00 37.10 5.14
3041 5451 1.084289 GTACAAGGTGTTGATCGGGC 58.916 55.000 0.00 0.00 37.10 6.13
3042 5452 0.035820 TACAAGGTGTTGATCGGGCC 60.036 55.000 0.00 0.00 37.10 5.80
3043 5453 1.002134 CAAGGTGTTGATCGGGCCT 60.002 57.895 0.84 0.00 35.46 5.19
3044 5454 0.609131 CAAGGTGTTGATCGGGCCTT 60.609 55.000 0.84 5.26 39.86 4.35
3045 5455 0.112412 AAGGTGTTGATCGGGCCTTT 59.888 50.000 0.84 0.00 36.24 3.11
3046 5456 0.322546 AGGTGTTGATCGGGCCTTTC 60.323 55.000 0.84 0.00 0.00 2.62
3063 5473 4.864726 CCTTTCCATCATTCCCTTCTTCT 58.135 43.478 0.00 0.00 0.00 2.85
3080 5490 0.541764 TCTCCACCATTGGGGCAAAC 60.542 55.000 7.78 0.00 44.28 2.93
3082 5492 1.840650 CCACCATTGGGGCAAACCA 60.841 57.895 7.78 0.00 42.91 3.67
3084 5494 0.831288 CACCATTGGGGCAAACCAGA 60.831 55.000 7.78 0.00 42.47 3.86
3091 5501 1.148027 TGGGGCAAACCAGAAATGGTA 59.852 47.619 0.00 0.00 42.20 3.25
3092 5502 1.548719 GGGGCAAACCAGAAATGGTAC 59.451 52.381 0.00 0.00 42.20 3.34
3112 5522 1.693606 CAAGGTGTTGATTGGGCCTTT 59.306 47.619 4.53 0.00 37.44 3.11
3113 5523 1.632589 AGGTGTTGATTGGGCCTTTC 58.367 50.000 4.53 1.82 0.00 2.62
3124 5534 1.275291 TGGGCCTTTCTTCTCGTGTAG 59.725 52.381 4.53 0.00 0.00 2.74
3126 5536 1.275573 GGCCTTTCTTCTCGTGTAGGT 59.724 52.381 0.00 0.00 0.00 3.08
3135 5545 1.676529 TCTCGTGTAGGTCATGCTAGC 59.323 52.381 8.10 8.10 33.44 3.42
3138 5548 1.332686 CGTGTAGGTCATGCTAGCGTA 59.667 52.381 9.63 0.00 0.00 4.42
3211 6983 7.473735 TTTTATGTTAGAAATGCCATGTCCA 57.526 32.000 0.00 0.00 0.00 4.02
3236 7010 3.136626 AGCCTATCCTAATTCCAAACGCT 59.863 43.478 0.00 0.00 0.00 5.07
3266 7042 8.668353 TGTGTTCAGATTGCTCAAATATCTTAC 58.332 33.333 0.00 0.00 0.00 2.34
3271 7047 9.494271 TCAGATTGCTCAAATATCTTACCATAC 57.506 33.333 0.00 0.00 0.00 2.39
3272 7048 8.725148 CAGATTGCTCAAATATCTTACCATACC 58.275 37.037 0.00 0.00 0.00 2.73
3273 7049 7.885399 AGATTGCTCAAATATCTTACCATACCC 59.115 37.037 0.00 0.00 0.00 3.69
3274 7050 5.876357 TGCTCAAATATCTTACCATACCCC 58.124 41.667 0.00 0.00 0.00 4.95
3343 7120 3.251571 CCTTAGTTTCGGTTTCCTCGAG 58.748 50.000 5.13 5.13 37.93 4.04
3355 7132 4.760047 CTCGAGGTTGTGGGCCCG 62.760 72.222 19.37 1.72 0.00 6.13
3357 7134 4.323477 CGAGGTTGTGGGCCCGAA 62.323 66.667 19.37 9.95 0.00 4.30
3384 7161 1.302431 CGGTGGTGCCTTGATGTCA 60.302 57.895 0.00 0.00 34.25 3.58
3394 7171 2.752030 CCTTGATGTCACTCCCTCCTA 58.248 52.381 0.00 0.00 0.00 2.94
3427 7272 2.961526 TAGTCCATTGTTCTCCGCTC 57.038 50.000 0.00 0.00 0.00 5.03
3440 7285 0.683504 TCCGCTCCTCTCAGGGTTAC 60.684 60.000 0.00 0.00 35.59 2.50
3449 7294 2.740826 CAGGGTTACGTGGTGGCG 60.741 66.667 0.00 0.00 37.94 5.69
3454 7300 3.548484 TTACGTGGTGGCGGGTGT 61.548 61.111 0.00 0.00 35.98 4.16
3468 7314 0.033366 GGGTGTTGTTTGGTGATGGC 59.967 55.000 0.00 0.00 0.00 4.40
3488 7334 4.626081 GGTGTGCTGCAGACCCGT 62.626 66.667 32.25 0.00 41.24 5.28
3491 7337 4.314440 GTGCTGCAGACCCGTGGA 62.314 66.667 20.43 0.00 0.00 4.02
3492 7338 4.007644 TGCTGCAGACCCGTGGAG 62.008 66.667 20.43 0.00 38.84 3.86
3520 7367 0.611896 CTTTTGACCGAGGGGCCATT 60.612 55.000 4.39 0.00 36.48 3.16
3521 7368 0.699399 TTTTGACCGAGGGGCCATTA 59.301 50.000 4.39 0.00 36.48 1.90
3522 7369 0.923358 TTTGACCGAGGGGCCATTAT 59.077 50.000 4.39 0.00 36.48 1.28
3530 7378 0.178953 AGGGGCCATTATCCATGCAC 60.179 55.000 4.39 0.00 0.00 4.57
3531 7379 1.187567 GGGGCCATTATCCATGCACC 61.188 60.000 4.39 0.00 0.00 5.01
3533 7381 0.537143 GGCCATTATCCATGCACCGA 60.537 55.000 0.00 0.00 0.00 4.69
3540 7388 0.615331 ATCCATGCACCGACTCACTT 59.385 50.000 0.00 0.00 0.00 3.16
3542 7390 0.518636 CCATGCACCGACTCACTTTG 59.481 55.000 0.00 0.00 0.00 2.77
3548 7396 1.296715 CCGACTCACTTTGGGGAGG 59.703 63.158 0.34 0.00 35.45 4.30
3582 7430 2.555199 GACAGTGTCCCTCATATGTGC 58.445 52.381 12.54 0.00 31.92 4.57
3589 7437 2.115427 TCCCTCATATGTGCGGAAAGA 58.885 47.619 0.00 0.00 31.67 2.52
3594 7442 3.732212 TCATATGTGCGGAAAGATCTGG 58.268 45.455 1.90 0.00 32.18 3.86
3595 7443 3.134623 TCATATGTGCGGAAAGATCTGGT 59.865 43.478 1.90 0.00 32.18 4.00
3596 7444 1.742761 ATGTGCGGAAAGATCTGGTG 58.257 50.000 0.00 0.00 32.18 4.17
3604 7452 2.616510 GGAAAGATCTGGTGAGGTGGTG 60.617 54.545 0.00 0.00 0.00 4.17
3606 7454 0.979665 AGATCTGGTGAGGTGGTGTG 59.020 55.000 0.00 0.00 0.00 3.82
3611 7459 1.275421 TGGTGAGGTGGTGTGTTCCA 61.275 55.000 0.00 0.00 34.85 3.53
3615 7463 1.004862 TGAGGTGGTGTGTTCCAAACA 59.995 47.619 0.00 0.00 39.34 2.83
3618 7466 1.404035 GGTGGTGTGTTCCAAACAGTC 59.596 52.381 0.00 0.00 43.10 3.51
3619 7467 2.365582 GTGGTGTGTTCCAAACAGTCT 58.634 47.619 0.00 0.00 43.10 3.24
3620 7468 2.097466 GTGGTGTGTTCCAAACAGTCTG 59.903 50.000 0.00 0.00 43.10 3.51
3630 7478 4.082845 TCCAAACAGTCTGGTTTTGTTCA 58.917 39.130 0.00 0.00 38.86 3.18
3634 7482 5.913137 AACAGTCTGGTTTTGTTCATTCA 57.087 34.783 4.53 0.00 29.55 2.57
3637 7485 5.036737 CAGTCTGGTTTTGTTCATTCACAC 58.963 41.667 0.00 0.00 0.00 3.82
3640 7488 3.099905 TGGTTTTGTTCATTCACACCCA 58.900 40.909 0.00 0.00 0.00 4.51
3646 7494 3.443045 CATTCACACCCAGCGGCC 61.443 66.667 0.00 0.00 0.00 6.13
3647 7495 4.740822 ATTCACACCCAGCGGCCC 62.741 66.667 0.00 0.00 0.00 5.80
3660 7508 2.203625 GGCCCAGTCCCTTTGCAA 60.204 61.111 0.00 0.00 0.00 4.08
3662 7510 1.832167 GCCCAGTCCCTTTGCAACA 60.832 57.895 0.00 0.00 0.00 3.33
3685 7533 7.365741 ACATGTTGCTTCTCTTATCTGTTTTG 58.634 34.615 0.00 0.00 0.00 2.44
3686 7534 6.942532 TGTTGCTTCTCTTATCTGTTTTGT 57.057 33.333 0.00 0.00 0.00 2.83
3687 7535 7.333528 TGTTGCTTCTCTTATCTGTTTTGTT 57.666 32.000 0.00 0.00 0.00 2.83
3701 7553 7.023197 TCTGTTTTGTTACTTGCCTTTAGAC 57.977 36.000 0.00 0.00 0.00 2.59
3704 7556 6.183360 TGTTTTGTTACTTGCCTTTAGACCTG 60.183 38.462 0.00 0.00 0.00 4.00
3705 7557 4.699925 TGTTACTTGCCTTTAGACCTGT 57.300 40.909 0.00 0.00 0.00 4.00
3706 7558 5.811796 TGTTACTTGCCTTTAGACCTGTA 57.188 39.130 0.00 0.00 0.00 2.74
3710 7562 4.504858 ACTTGCCTTTAGACCTGTATTCG 58.495 43.478 0.00 0.00 0.00 3.34
3727 7579 8.916654 CCTGTATTCGCTATGTTTCTTGTATAG 58.083 37.037 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
500 1953 5.416639 GCAATGCATCATGTATATGAGGGAA 59.583 40.000 11.89 0.42 45.97 3.97
1160 2839 1.229561 GGGGGCCCTATACTCTCCC 60.230 68.421 24.38 7.00 36.25 4.30
1161 2840 0.836830 GTGGGGGCCCTATACTCTCC 60.837 65.000 24.38 12.45 36.94 3.71
1162 2841 0.836830 GGTGGGGGCCCTATACTCTC 60.837 65.000 24.38 2.49 36.94 3.20
1163 2842 1.239235 GGTGGGGGCCCTATACTCT 59.761 63.158 24.38 0.00 36.94 3.24
1164 2843 1.074014 TGGTGGGGGCCCTATACTC 60.074 63.158 24.38 10.44 36.94 2.59
1165 2844 1.385489 GTGGTGGGGGCCCTATACT 60.385 63.158 24.38 0.00 36.94 2.12
1167 2846 2.039191 GGTGGTGGGGGCCCTATA 60.039 66.667 24.38 7.18 36.94 1.31
1196 2875 4.329545 TTCTGCCAGGCCACGGTC 62.330 66.667 9.64 2.10 0.00 4.79
1197 2876 4.643387 GTTCTGCCAGGCCACGGT 62.643 66.667 9.64 0.00 0.00 4.83
1209 2888 4.038080 GTTTGGCGGGCGGTTCTG 62.038 66.667 0.00 0.00 0.00 3.02
1210 2889 4.265056 AGTTTGGCGGGCGGTTCT 62.265 61.111 0.00 0.00 0.00 3.01
1211 2890 3.733960 GAGTTTGGCGGGCGGTTC 61.734 66.667 0.00 0.00 0.00 3.62
1212 2891 4.572571 TGAGTTTGGCGGGCGGTT 62.573 61.111 0.00 0.00 0.00 4.44
1213 2892 4.572571 TTGAGTTTGGCGGGCGGT 62.573 61.111 0.00 0.00 0.00 5.68
1214 2893 4.038080 GTTGAGTTTGGCGGGCGG 62.038 66.667 0.00 0.00 0.00 6.13
1215 2894 4.038080 GGTTGAGTTTGGCGGGCG 62.038 66.667 0.00 0.00 0.00 6.13
1216 2895 3.680786 GGGTTGAGTTTGGCGGGC 61.681 66.667 0.00 0.00 0.00 6.13
1217 2896 2.989253 GGGGTTGAGTTTGGCGGG 60.989 66.667 0.00 0.00 0.00 6.13
1218 2897 3.361977 CGGGGTTGAGTTTGGCGG 61.362 66.667 0.00 0.00 0.00 6.13
1219 2898 1.448922 TTTCGGGGTTGAGTTTGGCG 61.449 55.000 0.00 0.00 0.00 5.69
1220 2899 0.031585 GTTTCGGGGTTGAGTTTGGC 59.968 55.000 0.00 0.00 0.00 4.52
1221 2900 0.671796 GGTTTCGGGGTTGAGTTTGG 59.328 55.000 0.00 0.00 0.00 3.28
1222 2901 0.671796 GGGTTTCGGGGTTGAGTTTG 59.328 55.000 0.00 0.00 0.00 2.93
1223 2902 0.468585 GGGGTTTCGGGGTTGAGTTT 60.469 55.000 0.00 0.00 0.00 2.66
1224 2903 1.152138 GGGGTTTCGGGGTTGAGTT 59.848 57.895 0.00 0.00 0.00 3.01
1225 2904 2.837326 GGGGGTTTCGGGGTTGAGT 61.837 63.158 0.00 0.00 0.00 3.41
1226 2905 2.035155 GGGGGTTTCGGGGTTGAG 59.965 66.667 0.00 0.00 0.00 3.02
1242 2921 4.493747 GTCGAGCGAGGAACGGGG 62.494 72.222 0.00 0.00 42.83 5.73
1278 2957 1.069924 TATTTGTTGCATGTGCGCGC 61.070 50.000 27.26 27.26 45.83 6.86
1290 2969 1.735571 GTCCATCGGCGTGTATTTGTT 59.264 47.619 6.85 0.00 0.00 2.83
1291 2970 1.066430 AGTCCATCGGCGTGTATTTGT 60.066 47.619 6.85 0.00 0.00 2.83
1306 2994 3.822192 CGCCGATCGGTCAGTCCA 61.822 66.667 33.33 0.00 37.65 4.02
1307 2995 2.552585 TTTCGCCGATCGGTCAGTCC 62.553 60.000 33.33 15.78 39.05 3.85
1402 3090 2.776913 CGGGAGGGAGACGAGAAGC 61.777 68.421 0.00 0.00 0.00 3.86
1474 3656 4.697756 GGCGTGTACAGCTGGGCA 62.698 66.667 19.93 13.37 34.52 5.36
1495 3677 1.002011 GGCCCGCTCTCTCCTTTTT 60.002 57.895 0.00 0.00 0.00 1.94
1546 3728 3.918977 TGTGTGTGTCCGTCCGGG 61.919 66.667 0.00 0.00 35.59 5.73
1558 3740 0.933796 TATGTGTGTGTGCGTGTGTG 59.066 50.000 0.00 0.00 0.00 3.82
1607 3798 2.515071 GCTCCCATGCCGATCTCCT 61.515 63.158 0.00 0.00 0.00 3.69
1776 3982 1.532078 GGTCCGGATCCTCTCCTCC 60.532 68.421 7.81 0.00 42.47 4.30
1780 3986 0.470080 TCCATGGTCCGGATCCTCTC 60.470 60.000 13.41 0.00 0.00 3.20
1832 4038 2.503375 CGTACCTTTCGCGCGAGT 60.503 61.111 32.74 27.66 0.00 4.18
1838 4044 2.468532 CACGCACGTACCTTTCGC 59.531 61.111 0.00 0.00 0.00 4.70
1842 4048 3.033764 CACGCACGCACGTACCTT 61.034 61.111 2.78 0.00 46.34 3.50
1852 4058 4.589700 ACTTTGCACGCACGCACG 62.590 61.111 0.00 0.00 42.87 5.34
1853 4059 3.018428 CACTTTGCACGCACGCAC 61.018 61.111 0.00 0.00 42.87 5.34
1865 4071 3.013921 TCGAAGTTGGAGTTTGCACTTT 58.986 40.909 0.00 0.00 31.22 2.66
1867 4073 2.325583 TCGAAGTTGGAGTTTGCACT 57.674 45.000 0.00 0.00 35.17 4.40
1868 4074 2.411547 CGATCGAAGTTGGAGTTTGCAC 60.412 50.000 10.26 0.00 0.00 4.57
1869 4075 1.798223 CGATCGAAGTTGGAGTTTGCA 59.202 47.619 10.26 0.00 0.00 4.08
1870 4076 1.798813 ACGATCGAAGTTGGAGTTTGC 59.201 47.619 24.34 0.00 0.00 3.68
1871 4077 2.411547 GCACGATCGAAGTTGGAGTTTG 60.412 50.000 24.34 5.83 0.00 2.93
1872 4078 1.798813 GCACGATCGAAGTTGGAGTTT 59.201 47.619 24.34 0.00 0.00 2.66
1873 4079 1.429463 GCACGATCGAAGTTGGAGTT 58.571 50.000 24.34 0.00 0.00 3.01
1874 4080 0.389948 GGCACGATCGAAGTTGGAGT 60.390 55.000 24.34 0.00 0.00 3.85
1875 4081 0.108615 AGGCACGATCGAAGTTGGAG 60.109 55.000 24.34 2.05 0.00 3.86
1876 4082 0.389817 CAGGCACGATCGAAGTTGGA 60.390 55.000 24.34 0.00 0.00 3.53
1879 4085 1.741770 GGCAGGCACGATCGAAGTT 60.742 57.895 24.34 0.00 0.00 2.66
1880 4086 2.125512 GGCAGGCACGATCGAAGT 60.126 61.111 24.34 0.00 0.00 3.01
1881 4087 2.169789 CAGGCAGGCACGATCGAAG 61.170 63.158 24.34 14.75 0.00 3.79
1882 4088 2.125552 CAGGCAGGCACGATCGAA 60.126 61.111 24.34 0.00 0.00 3.71
1883 4089 4.819761 GCAGGCAGGCACGATCGA 62.820 66.667 24.34 0.00 0.00 3.59
1891 4097 3.138798 CATGACTGGCAGGCAGGC 61.139 66.667 29.25 25.12 36.17 4.85
1899 4105 3.785859 TCTCCCGGCATGACTGGC 61.786 66.667 3.65 0.00 44.44 4.85
1900 4106 2.187946 GTCTCCCGGCATGACTGG 59.812 66.667 1.77 1.77 45.52 4.00
1901 4107 2.187946 GGTCTCCCGGCATGACTG 59.812 66.667 15.71 0.00 0.00 3.51
1914 4120 1.575576 CGTCTGACGTTCTCCGGTCT 61.576 60.000 21.30 0.00 42.24 3.85
1931 4138 2.424302 CAAGAACCCCCGACACGT 59.576 61.111 0.00 0.00 0.00 4.49
1934 4141 0.551879 TTTTCCAAGAACCCCCGACA 59.448 50.000 0.00 0.00 0.00 4.35
1941 4156 3.374367 GGAGAGCGTATTTTCCAAGAACC 59.626 47.826 0.00 0.00 0.00 3.62
1954 4169 3.334583 AGCATCAAAAAGGAGAGCGTA 57.665 42.857 0.00 0.00 0.00 4.42
1955 4170 2.191128 AGCATCAAAAAGGAGAGCGT 57.809 45.000 0.00 0.00 0.00 5.07
1956 4171 2.159462 GGAAGCATCAAAAAGGAGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
1957 4172 2.159462 CGGAAGCATCAAAAAGGAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
1958 4173 3.754188 CGGAAGCATCAAAAAGGAGAG 57.246 47.619 0.00 0.00 0.00 3.20
1975 4195 6.477688 CGTCCTAATTAATTAACAAGAGCGGA 59.522 38.462 9.15 6.86 0.00 5.54
1981 4201 5.009310 GGCCCCGTCCTAATTAATTAACAAG 59.991 44.000 9.15 1.22 0.00 3.16
1986 4206 2.038820 CCGGCCCCGTCCTAATTAATTA 59.961 50.000 7.66 7.66 37.81 1.40
1987 4207 1.202842 CCGGCCCCGTCCTAATTAATT 60.203 52.381 5.89 5.89 37.81 1.40
1988 4208 0.399075 CCGGCCCCGTCCTAATTAAT 59.601 55.000 5.93 0.00 37.81 1.40
1989 4209 0.690411 TCCGGCCCCGTCCTAATTAA 60.690 55.000 5.93 0.00 37.81 1.40
1994 4214 4.517934 CTCTCCGGCCCCGTCCTA 62.518 72.222 5.93 0.00 37.81 2.94
2046 4266 0.942884 GGGAAGTCGTCGAACACCAC 60.943 60.000 0.00 0.00 0.00 4.16
2048 4268 1.373873 GGGGAAGTCGTCGAACACC 60.374 63.158 0.00 0.00 0.00 4.16
2180 4406 4.865761 GCGCGATCCGTACCTGCA 62.866 66.667 12.10 0.00 39.71 4.41
2205 4431 9.575868 TGGAGTTTAATTTTGATACTTACCACA 57.424 29.630 0.00 0.00 0.00 4.17
2214 4440 9.104965 CGGACAGTATGGAGTTTAATTTTGATA 57.895 33.333 0.00 0.00 43.62 2.15
2216 4442 6.938030 ACGGACAGTATGGAGTTTAATTTTGA 59.062 34.615 0.00 0.00 43.62 2.69
2218 4444 6.150474 CCACGGACAGTATGGAGTTTAATTTT 59.850 38.462 0.00 0.00 43.62 1.82
2219 4445 5.646360 CCACGGACAGTATGGAGTTTAATTT 59.354 40.000 0.00 0.00 43.62 1.82
2220 4446 5.046159 TCCACGGACAGTATGGAGTTTAATT 60.046 40.000 0.00 0.00 43.62 1.40
2221 4447 4.468510 TCCACGGACAGTATGGAGTTTAAT 59.531 41.667 0.00 0.00 43.62 1.40
2222 4448 3.833650 TCCACGGACAGTATGGAGTTTAA 59.166 43.478 0.00 0.00 43.62 1.52
2225 4451 1.933021 TCCACGGACAGTATGGAGTT 58.067 50.000 0.00 0.00 43.62 3.01
2226 4452 1.933021 TTCCACGGACAGTATGGAGT 58.067 50.000 1.85 0.00 43.32 3.85
2227 4453 2.543861 CGATTCCACGGACAGTATGGAG 60.544 54.545 1.85 0.00 43.32 3.86
2228 4454 1.407618 CGATTCCACGGACAGTATGGA 59.592 52.381 0.00 0.00 43.62 3.41
2229 4455 1.852942 CGATTCCACGGACAGTATGG 58.147 55.000 0.00 0.00 43.62 2.74
2239 4465 2.202932 CAGCTCCCCGATTCCACG 60.203 66.667 0.00 0.00 0.00 4.94
2241 4467 1.612146 TGTCAGCTCCCCGATTCCA 60.612 57.895 0.00 0.00 0.00 3.53
2242 4468 1.144936 CTGTCAGCTCCCCGATTCC 59.855 63.158 0.00 0.00 0.00 3.01
2243 4469 0.537188 TTCTGTCAGCTCCCCGATTC 59.463 55.000 0.00 0.00 0.00 2.52
2244 4470 0.984230 TTTCTGTCAGCTCCCCGATT 59.016 50.000 0.00 0.00 0.00 3.34
2245 4471 0.250513 GTTTCTGTCAGCTCCCCGAT 59.749 55.000 0.00 0.00 0.00 4.18
2246 4472 1.671742 GTTTCTGTCAGCTCCCCGA 59.328 57.895 0.00 0.00 0.00 5.14
2247 4473 1.376037 GGTTTCTGTCAGCTCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
2248 4474 0.322008 CAGGTTTCTGTCAGCTCCCC 60.322 60.000 0.00 0.00 36.30 4.81
2249 4475 3.239861 CAGGTTTCTGTCAGCTCCC 57.760 57.895 0.00 0.00 36.30 4.30
2260 4486 1.210155 GACGCATGCCACAGGTTTC 59.790 57.895 13.15 0.00 0.00 2.78
2265 4491 1.229975 TGAACAGACGCATGCCACAG 61.230 55.000 13.15 5.90 0.00 3.66
2277 4503 0.532573 GATCGGCAGGTCTGAACAGA 59.467 55.000 1.65 0.00 32.98 3.41
2278 4504 0.803768 CGATCGGCAGGTCTGAACAG 60.804 60.000 7.38 0.00 32.98 3.16
2317 4551 3.336997 TCTTCCTCTTCTCCAGGAACCTA 59.663 47.826 0.00 0.00 43.84 3.08
2328 4562 0.903942 CAGCCTGCTCTTCCTCTTCT 59.096 55.000 0.00 0.00 0.00 2.85
2480 4726 3.839432 GTTCCTCTCCCCGGCTCG 61.839 72.222 0.00 0.00 0.00 5.03
2497 4746 0.601558 AGCAGCAAGGCAGTGATTTG 59.398 50.000 0.00 0.00 35.83 2.32
2510 4759 1.472878 CTACTACGTGGAGAAGCAGCA 59.527 52.381 5.70 0.00 0.00 4.41
2511 4760 1.473278 ACTACTACGTGGAGAAGCAGC 59.527 52.381 5.70 0.00 0.00 5.25
2534 4783 8.356657 CCACGTAGTAGTAGAGTAGTACTGTAT 58.643 40.741 7.76 1.77 43.04 2.29
2535 4784 7.556635 TCCACGTAGTAGTAGAGTAGTACTGTA 59.443 40.741 7.76 5.18 43.04 2.74
2536 4785 6.378564 TCCACGTAGTAGTAGAGTAGTACTGT 59.621 42.308 7.76 6.34 43.04 3.55
2537 4786 6.800543 TCCACGTAGTAGTAGAGTAGTACTG 58.199 44.000 7.76 0.00 43.04 2.74
2539 4788 6.866248 GGATCCACGTAGTAGTAGAGTAGTAC 59.134 46.154 6.95 0.00 41.61 2.73
2542 4791 6.100404 AGGATCCACGTAGTAGTAGAGTAG 57.900 45.833 15.82 0.00 41.61 2.57
2543 4792 6.098838 TCAAGGATCCACGTAGTAGTAGAGTA 59.901 42.308 15.82 0.00 41.61 2.59
2544 4793 5.104610 TCAAGGATCCACGTAGTAGTAGAGT 60.105 44.000 15.82 0.00 41.61 3.24
2545 4794 5.366460 TCAAGGATCCACGTAGTAGTAGAG 58.634 45.833 15.82 0.00 41.61 2.43
2546 4795 5.363562 TCAAGGATCCACGTAGTAGTAGA 57.636 43.478 15.82 0.00 41.61 2.59
2547 4796 6.039493 ACAATCAAGGATCCACGTAGTAGTAG 59.961 42.308 15.82 0.00 41.61 2.57
2588 4837 1.676615 CCAATTAACGGGCGTGGTAGT 60.677 52.381 0.00 0.00 0.00 2.73
2631 4880 1.734163 ATATATTTAGCCGGCGCCAC 58.266 50.000 28.98 18.38 34.57 5.01
2638 4887 8.483758 ACTTAACCCAGGATATATATTTAGCCG 58.516 37.037 0.00 0.00 32.80 5.52
2653 4902 9.978044 GAACATACTTATACTACTTAACCCAGG 57.022 37.037 0.00 0.00 0.00 4.45
2669 4918 9.996554 TTCTCAAACAGATGAAGAACATACTTA 57.003 29.630 0.00 0.00 39.56 2.24
2670 4919 8.908786 TTCTCAAACAGATGAAGAACATACTT 57.091 30.769 0.00 0.00 39.56 2.24
2730 4979 7.201812 GCATACAGTAACAAATTCATCCCATCA 60.202 37.037 0.00 0.00 0.00 3.07
2731 4980 7.141363 GCATACAGTAACAAATTCATCCCATC 58.859 38.462 0.00 0.00 0.00 3.51
2732 4981 6.238731 CGCATACAGTAACAAATTCATCCCAT 60.239 38.462 0.00 0.00 0.00 4.00
2733 4982 5.065859 CGCATACAGTAACAAATTCATCCCA 59.934 40.000 0.00 0.00 0.00 4.37
2734 4983 5.295787 TCGCATACAGTAACAAATTCATCCC 59.704 40.000 0.00 0.00 0.00 3.85
2735 4984 6.037172 ACTCGCATACAGTAACAAATTCATCC 59.963 38.462 0.00 0.00 0.00 3.51
2736 4985 7.005062 ACTCGCATACAGTAACAAATTCATC 57.995 36.000 0.00 0.00 0.00 2.92
2737 4986 6.985188 ACTCGCATACAGTAACAAATTCAT 57.015 33.333 0.00 0.00 0.00 2.57
2785 5039 7.598869 TCATCGCTACATTTAATACAGCTTAGG 59.401 37.037 7.89 0.71 0.00 2.69
2907 5317 7.121759 CCCTCTCACTTTTCACATATTGTCATT 59.878 37.037 0.00 0.00 0.00 2.57
2912 5322 4.096984 GGCCCTCTCACTTTTCACATATTG 59.903 45.833 0.00 0.00 0.00 1.90
2925 5335 1.648467 GCGAAATGTGGCCCTCTCAC 61.648 60.000 0.00 0.00 35.82 3.51
2932 5342 0.099436 GACATGAGCGAAATGTGGCC 59.901 55.000 0.00 0.00 38.37 5.36
2933 5343 1.089920 AGACATGAGCGAAATGTGGC 58.910 50.000 0.00 0.00 38.37 5.01
2943 5353 0.671781 AGGCGACACAAGACATGAGC 60.672 55.000 0.00 0.00 0.00 4.26
2945 5355 0.392706 ACAGGCGACACAAGACATGA 59.607 50.000 0.00 0.00 0.00 3.07
2964 5374 1.596934 GCCATCCAAGTCACTCGGA 59.403 57.895 0.00 0.00 0.00 4.55
2965 5375 1.811266 CGCCATCCAAGTCACTCGG 60.811 63.158 0.00 0.00 0.00 4.63
2968 5378 1.296715 GTCCGCCATCCAAGTCACT 59.703 57.895 0.00 0.00 0.00 3.41
2984 5394 1.286248 ATGGTGTGGAGGTTAGGGTC 58.714 55.000 0.00 0.00 0.00 4.46
2991 5401 3.180282 CCCCAATGGTGTGGAGGT 58.820 61.111 0.00 0.00 41.65 3.85
2992 5402 2.362889 GCCCCAATGGTGTGGAGG 60.363 66.667 0.00 0.00 41.65 4.30
2994 5404 1.118356 GTTTGCCCCAATGGTGTGGA 61.118 55.000 0.00 0.00 41.65 4.02
2999 5409 1.536174 CCTGGTTTGCCCCAATGGT 60.536 57.895 0.00 0.00 33.07 3.55
3000 5410 0.835543 TTCCTGGTTTGCCCCAATGG 60.836 55.000 0.00 0.00 33.07 3.16
3001 5411 1.065998 CATTCCTGGTTTGCCCCAATG 60.066 52.381 0.00 0.00 33.07 2.82
3003 5413 0.835543 CCATTCCTGGTTTGCCCCAA 60.836 55.000 0.00 0.00 37.79 4.12
3004 5414 1.229145 CCATTCCTGGTTTGCCCCA 60.229 57.895 0.00 0.00 37.79 4.96
3005 5415 3.712287 CCATTCCTGGTTTGCCCC 58.288 61.111 0.00 0.00 37.79 5.80
3015 5425 4.589908 GATCAACACCTTGTACCATTCCT 58.410 43.478 0.00 0.00 0.00 3.36
3016 5426 3.374058 CGATCAACACCTTGTACCATTCC 59.626 47.826 0.00 0.00 0.00 3.01
3017 5427 3.374058 CCGATCAACACCTTGTACCATTC 59.626 47.826 0.00 0.00 0.00 2.67
3018 5428 3.343617 CCGATCAACACCTTGTACCATT 58.656 45.455 0.00 0.00 0.00 3.16
3019 5429 2.355716 CCCGATCAACACCTTGTACCAT 60.356 50.000 0.00 0.00 0.00 3.55
3020 5430 1.002659 CCCGATCAACACCTTGTACCA 59.997 52.381 0.00 0.00 0.00 3.25
3021 5431 1.734163 CCCGATCAACACCTTGTACC 58.266 55.000 0.00 0.00 0.00 3.34
3022 5432 1.084289 GCCCGATCAACACCTTGTAC 58.916 55.000 0.00 0.00 0.00 2.90
3023 5433 0.035820 GGCCCGATCAACACCTTGTA 60.036 55.000 0.00 0.00 0.00 2.41
3024 5434 1.303317 GGCCCGATCAACACCTTGT 60.303 57.895 0.00 0.00 0.00 3.16
3025 5435 0.609131 AAGGCCCGATCAACACCTTG 60.609 55.000 0.00 0.00 39.25 3.61
3026 5436 0.112412 AAAGGCCCGATCAACACCTT 59.888 50.000 0.00 0.00 42.48 3.50
3027 5437 0.322546 GAAAGGCCCGATCAACACCT 60.323 55.000 0.00 0.00 0.00 4.00
3028 5438 1.313091 GGAAAGGCCCGATCAACACC 61.313 60.000 0.00 0.00 0.00 4.16
3029 5439 0.608035 TGGAAAGGCCCGATCAACAC 60.608 55.000 0.00 0.00 34.97 3.32
3030 5440 0.331278 ATGGAAAGGCCCGATCAACA 59.669 50.000 0.00 0.00 34.97 3.33
3031 5441 1.025041 GATGGAAAGGCCCGATCAAC 58.975 55.000 0.00 0.00 34.97 3.18
3032 5442 0.623194 TGATGGAAAGGCCCGATCAA 59.377 50.000 0.00 0.00 34.97 2.57
3033 5443 0.846015 ATGATGGAAAGGCCCGATCA 59.154 50.000 0.00 3.09 34.97 2.92
3034 5444 1.882623 GAATGATGGAAAGGCCCGATC 59.117 52.381 0.00 0.00 34.97 3.69
3035 5445 1.479389 GGAATGATGGAAAGGCCCGAT 60.479 52.381 0.00 0.00 34.97 4.18
3036 5446 0.106719 GGAATGATGGAAAGGCCCGA 60.107 55.000 0.00 0.00 34.97 5.14
3037 5447 1.109323 GGGAATGATGGAAAGGCCCG 61.109 60.000 0.00 0.00 34.97 6.13
3038 5448 0.262876 AGGGAATGATGGAAAGGCCC 59.737 55.000 0.00 0.00 34.97 5.80
3039 5449 2.034878 GAAGGGAATGATGGAAAGGCC 58.965 52.381 0.00 0.00 37.10 5.19
3040 5450 3.023939 AGAAGGGAATGATGGAAAGGC 57.976 47.619 0.00 0.00 0.00 4.35
3041 5451 4.864726 AGAAGAAGGGAATGATGGAAAGG 58.135 43.478 0.00 0.00 0.00 3.11
3042 5452 4.886489 GGAGAAGAAGGGAATGATGGAAAG 59.114 45.833 0.00 0.00 0.00 2.62
3043 5453 4.292041 TGGAGAAGAAGGGAATGATGGAAA 59.708 41.667 0.00 0.00 0.00 3.13
3044 5454 3.851976 TGGAGAAGAAGGGAATGATGGAA 59.148 43.478 0.00 0.00 0.00 3.53
3045 5455 3.200825 GTGGAGAAGAAGGGAATGATGGA 59.799 47.826 0.00 0.00 0.00 3.41
3046 5456 3.549794 GTGGAGAAGAAGGGAATGATGG 58.450 50.000 0.00 0.00 0.00 3.51
3082 5492 5.243730 CCAATCAACACCTTGTACCATTTCT 59.756 40.000 0.00 0.00 0.00 2.52
3084 5494 4.283212 CCCAATCAACACCTTGTACCATTT 59.717 41.667 0.00 0.00 0.00 2.32
3091 5501 0.188342 AGGCCCAATCAACACCTTGT 59.812 50.000 0.00 0.00 0.00 3.16
3092 5502 1.341080 AAGGCCCAATCAACACCTTG 58.659 50.000 0.00 0.00 39.25 3.61
3112 5522 2.447443 AGCATGACCTACACGAGAAGA 58.553 47.619 0.00 0.00 0.00 2.87
3113 5523 2.949451 AGCATGACCTACACGAGAAG 57.051 50.000 0.00 0.00 0.00 2.85
3135 5545 4.022676 ACCATTTAAAGGGTTGTTGCTACG 60.023 41.667 18.55 0.00 40.81 3.51
3193 6965 5.507985 GGCTATTGGACATGGCATTTCTAAC 60.508 44.000 13.61 3.16 0.00 2.34
3211 6983 5.705905 GCGTTTGGAATTAGGATAGGCTATT 59.294 40.000 8.71 0.00 0.00 1.73
3236 7010 5.771153 TTTGAGCAATCTGAACACAATCA 57.229 34.783 0.00 0.00 0.00 2.57
3313 7090 4.961438 ACCGAAACTAAGGGTGAAAGTA 57.039 40.909 0.00 0.00 31.52 2.24
3343 7120 2.645192 CCAATTCGGGCCCACAACC 61.645 63.158 24.92 0.00 0.00 3.77
3355 7132 2.282887 ACCACCGCCACCCAATTC 60.283 61.111 0.00 0.00 0.00 2.17
3356 7133 2.600173 CACCACCGCCACCCAATT 60.600 61.111 0.00 0.00 0.00 2.32
3366 7143 1.302431 TGACATCAAGGCACCACCG 60.302 57.895 0.00 0.00 46.52 4.94
3380 7157 1.717077 ACCTTCTAGGAGGGAGTGACA 59.283 52.381 21.81 0.00 41.31 3.58
3384 7161 1.341187 CGACACCTTCTAGGAGGGAGT 60.341 57.143 21.81 18.26 41.31 3.85
3394 7171 4.618920 ATGGACTAAAACGACACCTTCT 57.381 40.909 0.00 0.00 0.00 2.85
3427 7272 0.246635 CACCACGTAACCCTGAGAGG 59.753 60.000 0.00 0.00 34.30 3.69
3449 7294 0.033366 GCCATCACCAAACAACACCC 59.967 55.000 0.00 0.00 0.00 4.61
3454 7300 0.105760 ACCCTGCCATCACCAAACAA 60.106 50.000 0.00 0.00 0.00 2.83
3468 7314 2.670934 GGTCTGCAGCACACCCTG 60.671 66.667 9.47 0.00 35.93 4.45
3492 7338 1.795286 CTCGGTCAAAAGAGCACACTC 59.205 52.381 0.00 0.00 43.82 3.51
3520 7367 1.485124 AGTGAGTCGGTGCATGGATA 58.515 50.000 0.00 0.00 0.00 2.59
3521 7368 0.615331 AAGTGAGTCGGTGCATGGAT 59.385 50.000 0.00 0.00 0.00 3.41
3522 7369 0.396435 AAAGTGAGTCGGTGCATGGA 59.604 50.000 0.00 0.00 0.00 3.41
3530 7378 1.296715 CCTCCCCAAAGTGAGTCGG 59.703 63.158 0.00 0.00 0.00 4.79
3531 7379 0.396811 AACCTCCCCAAAGTGAGTCG 59.603 55.000 0.00 0.00 0.00 4.18
3533 7381 1.421646 CTGAACCTCCCCAAAGTGAGT 59.578 52.381 0.00 0.00 0.00 3.41
3548 7396 2.234908 ACACTGTCCTGATAGGCTGAAC 59.765 50.000 0.00 0.00 34.61 3.18
3562 7410 2.555199 GCACATATGAGGGACACTGTC 58.445 52.381 10.38 0.00 0.00 3.51
3565 7413 0.465705 CCGCACATATGAGGGACACT 59.534 55.000 16.92 0.00 41.86 3.55
3574 7422 3.249320 CACCAGATCTTTCCGCACATATG 59.751 47.826 0.00 0.00 0.00 1.78
3575 7423 3.134623 TCACCAGATCTTTCCGCACATAT 59.865 43.478 0.00 0.00 0.00 1.78
3577 7425 1.278985 TCACCAGATCTTTCCGCACAT 59.721 47.619 0.00 0.00 0.00 3.21
3582 7430 1.406069 CCACCTCACCAGATCTTTCCG 60.406 57.143 0.00 0.00 0.00 4.30
3589 7437 1.072331 GAACACACCACCTCACCAGAT 59.928 52.381 0.00 0.00 0.00 2.90
3594 7442 1.404035 GTTTGGAACACACCACCTCAC 59.596 52.381 0.00 0.00 39.29 3.51
3595 7443 1.004862 TGTTTGGAACACACCACCTCA 59.995 47.619 0.00 0.00 38.41 3.86
3596 7444 1.676006 CTGTTTGGAACACACCACCTC 59.324 52.381 0.00 0.00 38.41 3.85
3604 7452 4.173256 CAAAACCAGACTGTTTGGAACAC 58.827 43.478 22.72 0.00 39.29 3.32
3606 7454 4.450082 ACAAAACCAGACTGTTTGGAAC 57.550 40.909 22.72 0.00 38.41 3.62
3611 7459 6.099341 GTGAATGAACAAAACCAGACTGTTT 58.901 36.000 0.93 0.00 40.05 2.83
3615 7463 4.097892 GGTGTGAATGAACAAAACCAGACT 59.902 41.667 0.00 0.00 32.46 3.24
3618 7466 3.131933 TGGGTGTGAATGAACAAAACCAG 59.868 43.478 0.00 0.00 33.27 4.00
3619 7467 3.099905 TGGGTGTGAATGAACAAAACCA 58.900 40.909 0.00 0.00 33.27 3.67
3620 7468 3.716601 CTGGGTGTGAATGAACAAAACC 58.283 45.455 0.00 0.00 0.00 3.27
3630 7478 4.740822 GGGCCGCTGGGTGTGAAT 62.741 66.667 0.00 0.00 34.97 2.57
3640 7488 4.351054 CAAAGGGACTGGGCCGCT 62.351 66.667 0.00 0.00 40.86 5.52
3646 7494 1.331214 ACATGTTGCAAAGGGACTGG 58.669 50.000 0.00 0.00 40.86 4.00
3647 7495 2.746269 CAACATGTTGCAAAGGGACTG 58.254 47.619 24.69 0.00 33.75 3.51
3660 7508 7.013655 ACAAAACAGATAAGAGAAGCAACATGT 59.986 33.333 0.00 0.00 0.00 3.21
3662 7510 7.516198 ACAAAACAGATAAGAGAAGCAACAT 57.484 32.000 0.00 0.00 0.00 2.71
3673 7521 9.612620 CTAAAGGCAAGTAACAAAACAGATAAG 57.387 33.333 0.00 0.00 0.00 1.73
3674 7522 9.344772 TCTAAAGGCAAGTAACAAAACAGATAA 57.655 29.630 0.00 0.00 0.00 1.75
3680 7528 6.183360 ACAGGTCTAAAGGCAAGTAACAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
3685 7533 6.035758 CGAATACAGGTCTAAAGGCAAGTAAC 59.964 42.308 0.00 0.00 0.00 2.50
3686 7534 6.103997 CGAATACAGGTCTAAAGGCAAGTAA 58.896 40.000 0.00 0.00 0.00 2.24
3687 7535 5.657474 CGAATACAGGTCTAAAGGCAAGTA 58.343 41.667 0.00 0.00 0.00 2.24
3701 7553 7.715265 ATACAAGAAACATAGCGAATACAGG 57.285 36.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.