Multiple sequence alignment - TraesCS4B01G295900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G295900 chr4B 100.000 8451 0 0 1 8451 581330328 581321878 0.000000e+00 15607.0
1 TraesCS4B01G295900 chr4B 74.786 1519 340 40 3671 5164 630096105 630094605 1.990000e-180 643.0
2 TraesCS4B01G295900 chr4B 97.479 238 5 1 1335 1572 581324058 581323822 1.020000e-108 405.0
3 TraesCS4B01G295900 chr4B 97.479 238 5 1 6271 6507 581328994 581328757 1.020000e-108 405.0
4 TraesCS4B01G295900 chr5B 97.265 4753 126 4 1753 6504 140958363 140953614 0.000000e+00 8054.0
5 TraesCS4B01G295900 chr5B 84.553 2693 384 20 2437 5119 699714164 699716834 0.000000e+00 2639.0
6 TraesCS4B01G295900 chr5B 86.283 1356 143 19 5160 6504 699716836 699718159 0.000000e+00 1434.0
7 TraesCS4B01G295900 chr5B 97.872 235 4 1 1335 1569 140953847 140953614 1.020000e-108 405.0
8 TraesCS4B01G295900 chr5B 76.825 630 130 14 5397 6018 648298571 648299192 2.920000e-89 340.0
9 TraesCS4B01G295900 chr5B 81.624 234 30 10 7435 7663 320398248 320398023 1.870000e-41 182.0
10 TraesCS4B01G295900 chr6D 92.603 5178 345 18 1339 6504 350256650 350251499 0.000000e+00 7406.0
11 TraesCS4B01G295900 chr6D 94.371 604 21 2 5915 6505 12112247 12112850 0.000000e+00 915.0
12 TraesCS4B01G295900 chr6D 96.170 235 8 1 1335 1569 12112616 12112849 4.790000e-102 383.0
13 TraesCS4B01G295900 chr6D 95.319 235 11 0 6273 6507 350256651 350256417 2.880000e-99 374.0
14 TraesCS4B01G295900 chr6D 94.515 237 11 2 1335 1570 350251733 350251498 1.730000e-96 364.0
15 TraesCS4B01G295900 chr6D 81.053 190 23 4 293 482 344304511 344304335 1.140000e-28 139.0
16 TraesCS4B01G295900 chr4A 84.497 5212 703 55 1339 6507 199429910 199424761 0.000000e+00 5051.0
17 TraesCS4B01G295900 chr4A 88.655 238 22 5 6273 6507 199429911 199429676 1.390000e-72 285.0
18 TraesCS4B01G295900 chr4A 86.250 240 29 4 1335 1572 199424998 199424761 3.030000e-64 257.0
19 TraesCS4B01G295900 chr2B 85.624 4591 586 50 1941 6504 185867798 185872341 0.000000e+00 4754.0
20 TraesCS4B01G295900 chr2B 81.880 1606 273 17 1562 3157 125240963 125239366 0.000000e+00 1338.0
21 TraesCS4B01G295900 chr2B 89.407 236 23 2 1335 1569 185872107 185872341 6.410000e-76 296.0
22 TraesCS4B01G295900 chr2B 80.000 155 28 3 321 474 131134878 131135030 2.490000e-20 111.0
23 TraesCS4B01G295900 chr4D 92.635 1222 82 4 6505 7718 465011086 465009865 0.000000e+00 1751.0
24 TraesCS4B01G295900 chr4D 92.623 610 38 7 731 1336 465011690 465011084 0.000000e+00 870.0
25 TraesCS4B01G295900 chr4D 88.235 680 47 17 7732 8387 464995811 464995141 0.000000e+00 782.0
26 TraesCS4B01G295900 chr4D 86.190 601 43 9 139 734 465024827 465024262 1.560000e-171 614.0
27 TraesCS4B01G295900 chr4D 94.366 142 7 1 1 142 465044427 465044287 5.140000e-52 217.0
28 TraesCS4B01G295900 chr4D 89.855 69 1 1 8389 8451 464993695 464993627 5.440000e-12 84.2
29 TraesCS4B01G295900 chr1B 81.130 1717 289 28 1421 3113 22080844 22082549 0.000000e+00 1343.0
30 TraesCS4B01G295900 chr1B 76.508 630 132 14 5397 6018 564696087 564696708 6.320000e-86 329.0
31 TraesCS4B01G295900 chr1B 86.538 52 6 1 67 117 30489159 30489108 1.000000e-03 56.5
32 TraesCS4B01G295900 chr1B 86.538 52 6 1 67 117 30501487 30501436 1.000000e-03 56.5
33 TraesCS4B01G295900 chr7A 81.694 1606 276 17 1562 3157 730240750 730242347 0.000000e+00 1321.0
34 TraesCS4B01G295900 chr7A 79.686 1782 340 22 1447 3215 711804262 711806034 0.000000e+00 1266.0
35 TraesCS4B01G295900 chr7A 75.804 1492 298 54 3696 5162 711806495 711807948 0.000000e+00 697.0
36 TraesCS4B01G295900 chr7A 91.026 156 14 0 6349 6504 726391960 726392115 2.390000e-50 211.0
37 TraesCS4B01G295900 chr7A 90.968 155 14 0 1416 1570 726391962 726392116 8.600000e-50 209.0
38 TraesCS4B01G295900 chr7A 81.567 217 38 2 270 484 694019793 694020009 2.420000e-40 178.0
39 TraesCS4B01G295900 chr7A 82.653 196 27 6 63 257 452650871 452650682 5.250000e-37 167.0
40 TraesCS4B01G295900 chr7A 80.110 181 32 3 71 249 44970215 44970037 1.910000e-26 132.0
41 TraesCS4B01G295900 chr3B 81.767 1585 275 12 1570 3146 5481069 5479491 0.000000e+00 1314.0
42 TraesCS4B01G295900 chr3B 74.025 1513 346 43 3670 5165 498435708 498434226 2.650000e-159 573.0
43 TraesCS4B01G295900 chr5A 79.600 951 181 8 5337 6277 375246724 375247671 0.000000e+00 669.0
44 TraesCS4B01G295900 chr5A 81.982 222 29 4 270 490 607195327 607195116 2.420000e-40 178.0
45 TraesCS4B01G295900 chr5A 85.714 154 17 3 108 257 697621523 697621371 3.160000e-34 158.0
46 TraesCS4B01G295900 chr5A 86.726 113 13 2 7435 7546 374891178 374891067 3.200000e-24 124.0
47 TraesCS4B01G295900 chr5A 82.609 138 21 2 120 257 288258764 288258898 1.490000e-22 119.0
48 TraesCS4B01G295900 chr6A 75.000 1520 326 47 3664 5162 11206392 11207878 0.000000e+00 652.0
49 TraesCS4B01G295900 chr6B 74.425 1521 333 46 3664 5162 425881767 425883253 3.370000e-168 603.0
50 TraesCS4B01G295900 chr6B 76.870 575 123 10 5397 5966 143761433 143762002 4.920000e-82 316.0
51 TraesCS4B01G295900 chr6B 72.296 675 165 21 3735 4398 34188302 34188965 3.110000e-44 191.0
52 TraesCS4B01G295900 chr6B 82.075 212 28 5 271 482 519846234 519846033 1.130000e-38 172.0
53 TraesCS4B01G295900 chr6B 70.056 708 180 31 3686 4376 21111317 21112009 4.170000e-18 104.0
54 TraesCS4B01G295900 chr1D 72.977 692 165 21 3734 4414 108738957 108738277 1.100000e-53 222.0
55 TraesCS4B01G295900 chr3D 83.721 215 32 3 270 482 474997949 474998162 5.170000e-47 200.0
56 TraesCS4B01G295900 chr3D 78.879 232 36 12 7437 7663 47468558 47468781 2.460000e-30 145.0
57 TraesCS4B01G295900 chr3D 86.923 130 12 5 125 250 394146464 394146592 3.180000e-29 141.0
58 TraesCS4B01G295900 chr7B 82.828 198 26 7 62 257 400939295 400939486 4.060000e-38 171.0
59 TraesCS4B01G295900 chr7D 82.741 197 25 9 62 257 397206195 397206383 5.250000e-37 167.0
60 TraesCS4B01G295900 chr7D 82.278 158 25 3 326 482 230905995 230906150 5.320000e-27 134.0
61 TraesCS4B01G295900 chr7D 77.863 131 23 3 273 403 481008886 481008762 9.100000e-10 76.8
62 TraesCS4B01G295900 chr2A 71.302 676 170 24 3735 4398 747683639 747684302 1.470000e-32 152.0
63 TraesCS4B01G295900 chr5D 85.185 135 16 4 115 249 442891907 442891777 1.480000e-27 135.0
64 TraesCS4B01G295900 chr5D 84.956 113 15 2 7435 7546 282352101 282351990 6.930000e-21 113.0
65 TraesCS4B01G295900 chr3A 79.245 212 30 10 270 474 13089810 13090014 1.480000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G295900 chr4B 581321878 581330328 8450 True 15607.000000 15607 100.000000 1 8451 1 chr4B.!!$R1 8450
1 TraesCS4B01G295900 chr4B 630094605 630096105 1500 True 643.000000 643 74.786000 3671 5164 1 chr4B.!!$R4 1493
2 TraesCS4B01G295900 chr5B 140953614 140958363 4749 True 8054.000000 8054 97.265000 1753 6504 1 chr5B.!!$R1 4751
3 TraesCS4B01G295900 chr5B 699714164 699718159 3995 False 2036.500000 2639 85.418000 2437 6504 2 chr5B.!!$F2 4067
4 TraesCS4B01G295900 chr5B 648298571 648299192 621 False 340.000000 340 76.825000 5397 6018 1 chr5B.!!$F1 621
5 TraesCS4B01G295900 chr6D 350251498 350256651 5153 True 2714.666667 7406 94.145667 1335 6507 3 chr6D.!!$R2 5172
6 TraesCS4B01G295900 chr6D 12112247 12112850 603 False 649.000000 915 95.270500 1335 6505 2 chr6D.!!$F1 5170
7 TraesCS4B01G295900 chr4A 199424761 199429910 5149 True 5051.000000 5051 84.497000 1339 6507 1 chr4A.!!$R1 5168
8 TraesCS4B01G295900 chr2B 185867798 185872341 4543 False 2525.000000 4754 87.515500 1335 6504 2 chr2B.!!$F2 5169
9 TraesCS4B01G295900 chr2B 125239366 125240963 1597 True 1338.000000 1338 81.880000 1562 3157 1 chr2B.!!$R1 1595
10 TraesCS4B01G295900 chr4D 465009865 465011690 1825 True 1310.500000 1751 92.629000 731 7718 2 chr4D.!!$R4 6987
11 TraesCS4B01G295900 chr4D 465024262 465024827 565 True 614.000000 614 86.190000 139 734 1 chr4D.!!$R1 595
12 TraesCS4B01G295900 chr4D 464993627 464995811 2184 True 433.100000 782 89.045000 7732 8451 2 chr4D.!!$R3 719
13 TraesCS4B01G295900 chr1B 22080844 22082549 1705 False 1343.000000 1343 81.130000 1421 3113 1 chr1B.!!$F1 1692
14 TraesCS4B01G295900 chr1B 564696087 564696708 621 False 329.000000 329 76.508000 5397 6018 1 chr1B.!!$F2 621
15 TraesCS4B01G295900 chr7A 730240750 730242347 1597 False 1321.000000 1321 81.694000 1562 3157 1 chr7A.!!$F2 1595
16 TraesCS4B01G295900 chr7A 711804262 711807948 3686 False 981.500000 1266 77.745000 1447 5162 2 chr7A.!!$F3 3715
17 TraesCS4B01G295900 chr3B 5479491 5481069 1578 True 1314.000000 1314 81.767000 1570 3146 1 chr3B.!!$R1 1576
18 TraesCS4B01G295900 chr3B 498434226 498435708 1482 True 573.000000 573 74.025000 3670 5165 1 chr3B.!!$R2 1495
19 TraesCS4B01G295900 chr5A 375246724 375247671 947 False 669.000000 669 79.600000 5337 6277 1 chr5A.!!$F2 940
20 TraesCS4B01G295900 chr6A 11206392 11207878 1486 False 652.000000 652 75.000000 3664 5162 1 chr6A.!!$F1 1498
21 TraesCS4B01G295900 chr6B 425881767 425883253 1486 False 603.000000 603 74.425000 3664 5162 1 chr6B.!!$F4 1498
22 TraesCS4B01G295900 chr6B 143761433 143762002 569 False 316.000000 316 76.870000 5397 5966 1 chr6B.!!$F3 569
23 TraesCS4B01G295900 chr1D 108738277 108738957 680 True 222.000000 222 72.977000 3734 4414 1 chr1D.!!$R1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 567 0.035317 TCAGCACCGCTTCATCAACT 59.965 50.000 0.00 0.00 36.40 3.16 F
565 568 0.167470 CAGCACCGCTTCATCAACTG 59.833 55.000 0.00 0.00 36.40 3.16 F
566 569 0.035317 AGCACCGCTTCATCAACTGA 59.965 50.000 0.00 0.00 33.89 3.41 F
723 726 0.250124 ACAATTCAACACCGGCGAGA 60.250 50.000 9.30 0.00 0.00 4.04 F
1240 1247 0.321671 GCTCAGAGCCACAAGGTACA 59.678 55.000 11.84 0.00 34.48 2.90 F
1250 1257 0.595095 ACAAGGTACACCGACGAGTC 59.405 55.000 0.00 0.00 42.08 3.36 F
1660 1706 1.000396 AGCCCCTTGGTGAAGATGC 60.000 57.895 0.00 0.00 0.00 3.91 F
3010 3057 1.014564 GTTAGCACCTGCAGGACGAC 61.015 60.000 39.19 25.32 45.16 4.34 F
3697 3954 1.290203 AGGTGCGCTCGTCAAATATG 58.710 50.000 9.73 0.00 0.00 1.78 F
5124 5396 0.612229 CACTGCTGAGGAGATGGTGT 59.388 55.000 8.31 0.00 0.00 4.16 F
6507 6874 0.250989 GGTCGGGTTTCCAACATCCA 60.251 55.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1812 1.271871 TGTCAAGCAATCCGGTCCAAT 60.272 47.619 0.00 0.00 0.00 3.16 R
1844 1890 1.736586 CAACTCCTCGCCGAGCTAT 59.263 57.895 9.01 0.00 32.79 2.97 R
2591 2637 1.228429 TTGGGGTTTCAGGCTTCCG 60.228 57.895 0.00 0.00 0.00 4.30 R
2848 2894 4.379243 CAGCCCCGTCGTCAAGCT 62.379 66.667 0.00 0.00 0.00 3.74 R
3103 3150 0.253347 TCAGCCCCATTCCCTCTTCT 60.253 55.000 0.00 0.00 0.00 2.85 R
3327 3380 3.066190 CCACTACCTCGCCCGACA 61.066 66.667 0.00 0.00 0.00 4.35 R
3648 3905 1.470632 CCTCACTTGCCGCAACAAAAA 60.471 47.619 0.38 0.00 0.00 1.94 R
3994 4256 0.985549 GCACTCTTCTAGTTCACGCG 59.014 55.000 3.53 3.53 35.76 6.01 R
5666 5941 0.979665 CAGCTGGAGGTCTTCTTCCA 59.020 55.000 5.57 0.00 45.52 3.53 R
7039 7410 0.320247 CGCTCACCTTCTGCACTCTT 60.320 55.000 0.00 0.00 0.00 2.85 R
8363 8756 0.107456 AGCAGGTGAATATGCCGGAG 59.893 55.000 5.05 0.00 43.60 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.040965 TTCTTTGGCAAGCCCTGAG 57.959 52.632 8.89 4.06 34.56 3.35
19 20 0.478072 TTCTTTGGCAAGCCCTGAGA 59.522 50.000 8.89 6.37 34.56 3.27
20 21 0.478072 TCTTTGGCAAGCCCTGAGAA 59.522 50.000 8.89 0.00 34.56 2.87
21 22 1.076024 TCTTTGGCAAGCCCTGAGAAT 59.924 47.619 8.89 0.00 34.56 2.40
22 23 1.203994 CTTTGGCAAGCCCTGAGAATG 59.796 52.381 8.89 0.00 34.56 2.67
23 24 0.612732 TTGGCAAGCCCTGAGAATGG 60.613 55.000 8.89 0.00 34.56 3.16
40 41 4.541213 GGACCTCCCACTGAGACA 57.459 61.111 0.00 0.00 44.42 3.41
41 42 2.281830 GGACCTCCCACTGAGACAG 58.718 63.158 0.00 0.00 44.42 3.51
42 43 0.251832 GGACCTCCCACTGAGACAGA 60.252 60.000 5.76 0.00 44.42 3.41
43 44 1.633774 GACCTCCCACTGAGACAGAA 58.366 55.000 5.76 0.00 44.42 3.02
44 45 2.183679 GACCTCCCACTGAGACAGAAT 58.816 52.381 5.76 0.00 44.42 2.40
45 46 3.366396 GACCTCCCACTGAGACAGAATA 58.634 50.000 5.76 0.00 44.42 1.75
46 47 3.370104 ACCTCCCACTGAGACAGAATAG 58.630 50.000 5.76 0.00 44.42 1.73
47 48 3.011821 ACCTCCCACTGAGACAGAATAGA 59.988 47.826 5.76 0.00 44.42 1.98
48 49 3.636300 CCTCCCACTGAGACAGAATAGAG 59.364 52.174 5.76 6.02 44.42 2.43
49 50 3.636300 CTCCCACTGAGACAGAATAGAGG 59.364 52.174 5.76 0.00 44.42 3.69
50 51 2.102252 CCCACTGAGACAGAATAGAGGC 59.898 54.545 5.76 0.00 35.18 4.70
51 52 2.762887 CCACTGAGACAGAATAGAGGCA 59.237 50.000 5.76 0.00 35.18 4.75
52 53 3.196469 CCACTGAGACAGAATAGAGGCAA 59.804 47.826 5.76 0.00 35.18 4.52
53 54 4.323028 CCACTGAGACAGAATAGAGGCAAA 60.323 45.833 5.76 0.00 35.18 3.68
54 55 5.240891 CACTGAGACAGAATAGAGGCAAAA 58.759 41.667 5.76 0.00 35.18 2.44
55 56 5.879223 CACTGAGACAGAATAGAGGCAAAAT 59.121 40.000 5.76 0.00 35.18 1.82
56 57 6.373774 CACTGAGACAGAATAGAGGCAAAATT 59.626 38.462 5.76 0.00 35.18 1.82
57 58 6.944862 ACTGAGACAGAATAGAGGCAAAATTT 59.055 34.615 5.76 0.00 35.18 1.82
58 59 8.103305 ACTGAGACAGAATAGAGGCAAAATTTA 58.897 33.333 5.76 0.00 35.18 1.40
59 60 9.118300 CTGAGACAGAATAGAGGCAAAATTTAT 57.882 33.333 0.00 0.00 32.44 1.40
60 61 8.896744 TGAGACAGAATAGAGGCAAAATTTATG 58.103 33.333 0.00 0.00 0.00 1.90
61 62 8.230472 AGACAGAATAGAGGCAAAATTTATGG 57.770 34.615 0.00 0.00 0.00 2.74
62 63 8.055181 AGACAGAATAGAGGCAAAATTTATGGA 58.945 33.333 0.00 0.00 0.00 3.41
63 64 8.000780 ACAGAATAGAGGCAAAATTTATGGAC 57.999 34.615 0.00 0.00 0.00 4.02
64 65 7.134815 CAGAATAGAGGCAAAATTTATGGACG 58.865 38.462 0.00 0.00 0.00 4.79
65 66 6.828785 AGAATAGAGGCAAAATTTATGGACGT 59.171 34.615 0.00 0.00 0.00 4.34
66 67 4.701956 AGAGGCAAAATTTATGGACGTG 57.298 40.909 0.00 0.00 0.00 4.49
67 68 3.443681 AGAGGCAAAATTTATGGACGTGG 59.556 43.478 0.00 0.00 0.00 4.94
68 69 3.426615 AGGCAAAATTTATGGACGTGGA 58.573 40.909 0.00 0.00 0.00 4.02
69 70 4.023291 AGGCAAAATTTATGGACGTGGAT 58.977 39.130 0.00 0.00 0.00 3.41
70 71 4.466015 AGGCAAAATTTATGGACGTGGATT 59.534 37.500 0.00 0.00 0.00 3.01
71 72 5.046663 AGGCAAAATTTATGGACGTGGATTT 60.047 36.000 0.00 0.00 0.00 2.17
72 73 5.641636 GGCAAAATTTATGGACGTGGATTTT 59.358 36.000 0.00 0.00 0.00 1.82
73 74 6.148645 GGCAAAATTTATGGACGTGGATTTTT 59.851 34.615 0.00 0.00 0.00 1.94
74 75 7.014702 GCAAAATTTATGGACGTGGATTTTTG 58.985 34.615 0.00 1.79 0.00 2.44
75 76 7.517321 CAAAATTTATGGACGTGGATTTTTGG 58.483 34.615 0.00 0.00 0.00 3.28
76 77 6.597832 AATTTATGGACGTGGATTTTTGGA 57.402 33.333 0.00 0.00 0.00 3.53
77 78 6.790232 ATTTATGGACGTGGATTTTTGGAT 57.210 33.333 0.00 0.00 0.00 3.41
78 79 5.828299 TTATGGACGTGGATTTTTGGATC 57.172 39.130 0.00 0.00 0.00 3.36
79 80 3.433306 TGGACGTGGATTTTTGGATCT 57.567 42.857 0.00 0.00 0.00 2.75
80 81 3.081061 TGGACGTGGATTTTTGGATCTG 58.919 45.455 0.00 0.00 0.00 2.90
81 82 2.423538 GGACGTGGATTTTTGGATCTGG 59.576 50.000 0.00 0.00 0.00 3.86
82 83 2.423538 GACGTGGATTTTTGGATCTGGG 59.576 50.000 0.00 0.00 0.00 4.45
83 84 2.041081 ACGTGGATTTTTGGATCTGGGA 59.959 45.455 0.00 0.00 0.00 4.37
84 85 2.684881 CGTGGATTTTTGGATCTGGGAG 59.315 50.000 0.00 0.00 0.00 4.30
85 86 2.428530 GTGGATTTTTGGATCTGGGAGC 59.571 50.000 0.00 0.00 0.00 4.70
86 87 2.042842 TGGATTTTTGGATCTGGGAGCA 59.957 45.455 0.00 0.00 0.00 4.26
87 88 3.303049 GGATTTTTGGATCTGGGAGCAT 58.697 45.455 0.00 0.00 0.00 3.79
88 89 4.079269 TGGATTTTTGGATCTGGGAGCATA 60.079 41.667 0.00 0.00 0.00 3.14
89 90 5.082425 GGATTTTTGGATCTGGGAGCATAT 58.918 41.667 0.00 0.00 0.00 1.78
90 91 5.047519 GGATTTTTGGATCTGGGAGCATATG 60.048 44.000 0.00 0.00 0.00 1.78
91 92 2.574006 TTGGATCTGGGAGCATATGC 57.426 50.000 20.36 20.36 42.49 3.14
106 107 5.972107 GCATATGCTCCCTAATGAACATT 57.028 39.130 20.64 5.40 38.21 2.71
108 109 7.452880 GCATATGCTCCCTAATGAACATTAA 57.547 36.000 20.64 0.00 38.21 1.40
109 110 7.885297 GCATATGCTCCCTAATGAACATTAAA 58.115 34.615 20.64 0.00 38.21 1.52
110 111 8.359642 GCATATGCTCCCTAATGAACATTAAAA 58.640 33.333 20.64 0.00 38.21 1.52
114 115 8.359875 TGCTCCCTAATGAACATTAAAATTGA 57.640 30.769 8.31 1.97 33.34 2.57
115 116 8.811017 TGCTCCCTAATGAACATTAAAATTGAA 58.189 29.630 8.31 0.00 33.34 2.69
116 117 9.651913 GCTCCCTAATGAACATTAAAATTGAAA 57.348 29.630 8.31 0.00 33.34 2.69
217 219 4.385478 TTCATGCCATATGGGATAGCAA 57.615 40.909 26.44 16.73 44.94 3.91
310 313 4.396790 TGGAGGTAATATTTGGCGTTTGAC 59.603 41.667 0.00 0.00 0.00 3.18
313 316 5.949735 AGGTAATATTTGGCGTTTGACTTG 58.050 37.500 0.00 0.00 0.00 3.16
317 320 6.523676 AATATTTGGCGTTTGACTTGTTTG 57.476 33.333 0.00 0.00 0.00 2.93
318 321 3.305398 TTTGGCGTTTGACTTGTTTGT 57.695 38.095 0.00 0.00 0.00 2.83
319 322 3.305398 TTGGCGTTTGACTTGTTTGTT 57.695 38.095 0.00 0.00 0.00 2.83
320 323 3.305398 TGGCGTTTGACTTGTTTGTTT 57.695 38.095 0.00 0.00 0.00 2.83
321 324 3.654414 TGGCGTTTGACTTGTTTGTTTT 58.346 36.364 0.00 0.00 0.00 2.43
322 325 4.058817 TGGCGTTTGACTTGTTTGTTTTT 58.941 34.783 0.00 0.00 0.00 1.94
365 368 6.521162 TGAAGTTCTTCCCCTAAAAATTTGC 58.479 36.000 4.17 0.00 0.00 3.68
366 369 6.098982 TGAAGTTCTTCCCCTAAAAATTTGCA 59.901 34.615 4.17 0.00 0.00 4.08
389 392 6.411376 CAGGTAGTATTTGGGTGTGACAATA 58.589 40.000 0.00 0.00 0.00 1.90
390 393 6.882140 CAGGTAGTATTTGGGTGTGACAATAA 59.118 38.462 0.00 0.00 0.00 1.40
394 397 6.977213 AGTATTTGGGTGTGACAATAAACAC 58.023 36.000 0.00 0.00 44.79 3.32
399 402 6.227298 TGGGTGTGACAATAAACACATTTT 57.773 33.333 8.08 0.00 46.83 1.82
456 459 4.952262 TTTGACACTCAGAAGCATATGC 57.048 40.909 20.36 20.36 42.49 3.14
480 483 5.880901 TCCCTAGAGCCAAATTGAATATCC 58.119 41.667 0.00 0.00 0.00 2.59
481 484 4.697352 CCCTAGAGCCAAATTGAATATCCG 59.303 45.833 0.00 0.00 0.00 4.18
482 485 4.154918 CCTAGAGCCAAATTGAATATCCGC 59.845 45.833 0.00 0.00 0.00 5.54
483 486 3.554934 AGAGCCAAATTGAATATCCGCA 58.445 40.909 0.00 0.00 0.00 5.69
484 487 3.953612 AGAGCCAAATTGAATATCCGCAA 59.046 39.130 0.00 0.00 0.00 4.85
485 488 4.402155 AGAGCCAAATTGAATATCCGCAAA 59.598 37.500 0.00 0.00 0.00 3.68
486 489 5.083533 AGCCAAATTGAATATCCGCAAAA 57.916 34.783 0.00 0.00 0.00 2.44
487 490 5.673514 AGCCAAATTGAATATCCGCAAAAT 58.326 33.333 0.00 0.00 0.00 1.82
488 491 6.114767 AGCCAAATTGAATATCCGCAAAATT 58.885 32.000 0.00 0.00 0.00 1.82
489 492 6.598850 AGCCAAATTGAATATCCGCAAAATTT 59.401 30.769 0.00 0.00 0.00 1.82
490 493 6.906678 GCCAAATTGAATATCCGCAAAATTTC 59.093 34.615 0.00 0.00 0.00 2.17
491 494 7.201635 GCCAAATTGAATATCCGCAAAATTTCT 60.202 33.333 0.00 0.00 0.00 2.52
492 495 8.667463 CCAAATTGAATATCCGCAAAATTTCTT 58.333 29.630 0.00 0.00 0.00 2.52
495 498 9.434420 AATTGAATATCCGCAAAATTTCTTTCA 57.566 25.926 0.00 0.00 0.00 2.69
496 499 9.603921 ATTGAATATCCGCAAAATTTCTTTCAT 57.396 25.926 0.00 0.00 0.00 2.57
502 505 8.807667 ATCCGCAAAATTTCTTTCATATGATC 57.192 30.769 6.17 0.00 0.00 2.92
503 506 7.770201 TCCGCAAAATTTCTTTCATATGATCA 58.230 30.769 6.17 0.00 0.00 2.92
504 507 7.701924 TCCGCAAAATTTCTTTCATATGATCAC 59.298 33.333 6.17 0.00 0.00 3.06
505 508 7.703621 CCGCAAAATTTCTTTCATATGATCACT 59.296 33.333 6.17 0.00 0.00 3.41
506 509 9.079833 CGCAAAATTTCTTTCATATGATCACTT 57.920 29.630 6.17 0.00 0.00 3.16
510 513 9.778993 AAATTTCTTTCATATGATCACTTGACG 57.221 29.630 6.17 0.00 0.00 4.35
511 514 6.908870 TTCTTTCATATGATCACTTGACGG 57.091 37.500 6.17 0.42 0.00 4.79
512 515 5.977635 TCTTTCATATGATCACTTGACGGT 58.022 37.500 6.17 0.00 0.00 4.83
513 516 7.107639 TCTTTCATATGATCACTTGACGGTA 57.892 36.000 6.17 0.00 0.00 4.02
514 517 6.978659 TCTTTCATATGATCACTTGACGGTAC 59.021 38.462 6.17 0.00 0.00 3.34
515 518 6.465439 TTCATATGATCACTTGACGGTACT 57.535 37.500 6.17 0.00 0.00 2.73
516 519 7.576861 TTCATATGATCACTTGACGGTACTA 57.423 36.000 6.17 0.00 0.00 1.82
517 520 7.203255 TCATATGATCACTTGACGGTACTAG 57.797 40.000 0.00 0.00 0.00 2.57
518 521 6.996282 TCATATGATCACTTGACGGTACTAGA 59.004 38.462 0.00 0.00 0.00 2.43
519 522 5.759506 ATGATCACTTGACGGTACTAGAG 57.240 43.478 0.00 0.00 0.00 2.43
520 523 4.586884 TGATCACTTGACGGTACTAGAGT 58.413 43.478 0.00 0.00 0.00 3.24
521 524 4.395231 TGATCACTTGACGGTACTAGAGTG 59.605 45.833 0.00 0.00 36.68 3.51
522 525 3.748083 TCACTTGACGGTACTAGAGTGT 58.252 45.455 0.00 0.00 36.70 3.55
523 526 4.139786 TCACTTGACGGTACTAGAGTGTT 58.860 43.478 0.00 0.00 36.70 3.32
524 527 4.023450 TCACTTGACGGTACTAGAGTGTTG 60.023 45.833 0.00 0.00 36.70 3.33
525 528 4.023450 CACTTGACGGTACTAGAGTGTTGA 60.023 45.833 0.00 0.00 32.12 3.18
526 529 4.215827 ACTTGACGGTACTAGAGTGTTGAG 59.784 45.833 0.00 0.00 0.00 3.02
527 530 2.486982 TGACGGTACTAGAGTGTTGAGC 59.513 50.000 0.00 0.00 0.00 4.26
528 531 1.467734 ACGGTACTAGAGTGTTGAGCG 59.532 52.381 0.00 0.00 32.23 5.03
529 532 1.736126 CGGTACTAGAGTGTTGAGCGA 59.264 52.381 0.00 0.00 0.00 4.93
530 533 2.355132 CGGTACTAGAGTGTTGAGCGAT 59.645 50.000 0.00 0.00 0.00 4.58
531 534 3.546417 CGGTACTAGAGTGTTGAGCGATC 60.546 52.174 0.00 0.00 0.00 3.69
532 535 3.377485 GGTACTAGAGTGTTGAGCGATCA 59.623 47.826 0.00 0.00 0.00 2.92
533 536 4.142447 GGTACTAGAGTGTTGAGCGATCAA 60.142 45.833 12.91 12.91 0.00 2.57
534 537 4.103365 ACTAGAGTGTTGAGCGATCAAG 57.897 45.455 17.75 5.49 0.00 3.02
535 538 3.508012 ACTAGAGTGTTGAGCGATCAAGT 59.492 43.478 17.75 6.20 0.00 3.16
536 539 2.681706 AGAGTGTTGAGCGATCAAGTG 58.318 47.619 17.75 0.00 0.00 3.16
537 540 2.036475 AGAGTGTTGAGCGATCAAGTGT 59.964 45.455 17.75 3.54 0.00 3.55
538 541 2.802816 GAGTGTTGAGCGATCAAGTGTT 59.197 45.455 17.75 2.80 0.00 3.32
539 542 3.987868 GAGTGTTGAGCGATCAAGTGTTA 59.012 43.478 17.75 0.00 0.00 2.41
540 543 4.569943 AGTGTTGAGCGATCAAGTGTTAT 58.430 39.130 17.75 0.00 0.00 1.89
541 544 4.627467 AGTGTTGAGCGATCAAGTGTTATC 59.373 41.667 17.75 3.59 0.00 1.75
542 545 4.388773 GTGTTGAGCGATCAAGTGTTATCA 59.611 41.667 17.75 6.43 0.00 2.15
543 546 4.994217 TGTTGAGCGATCAAGTGTTATCAA 59.006 37.500 17.75 0.00 0.00 2.57
544 547 5.643348 TGTTGAGCGATCAAGTGTTATCAAT 59.357 36.000 17.75 0.00 0.00 2.57
545 548 6.149308 TGTTGAGCGATCAAGTGTTATCAATT 59.851 34.615 17.75 0.00 31.86 2.32
546 549 6.349973 TGAGCGATCAAGTGTTATCAATTC 57.650 37.500 0.00 0.00 29.11 2.17
547 550 5.874261 TGAGCGATCAAGTGTTATCAATTCA 59.126 36.000 0.00 0.00 29.11 2.57
548 551 6.036408 TGAGCGATCAAGTGTTATCAATTCAG 59.964 38.462 0.00 0.00 29.11 3.02
549 552 4.966366 GCGATCAAGTGTTATCAATTCAGC 59.034 41.667 0.00 0.00 29.11 4.26
550 553 5.447683 GCGATCAAGTGTTATCAATTCAGCA 60.448 40.000 0.00 0.00 29.11 4.41
551 554 5.961843 CGATCAAGTGTTATCAATTCAGCAC 59.038 40.000 0.00 0.00 29.11 4.40
552 555 5.627499 TCAAGTGTTATCAATTCAGCACC 57.373 39.130 0.00 0.00 29.11 5.01
553 556 4.154015 TCAAGTGTTATCAATTCAGCACCG 59.846 41.667 0.00 0.00 29.11 4.94
554 557 2.420022 AGTGTTATCAATTCAGCACCGC 59.580 45.455 0.00 0.00 0.00 5.68
555 558 2.420022 GTGTTATCAATTCAGCACCGCT 59.580 45.455 0.00 0.00 40.77 5.52
556 559 3.081061 TGTTATCAATTCAGCACCGCTT 58.919 40.909 0.00 0.00 36.40 4.68
557 560 3.126858 TGTTATCAATTCAGCACCGCTTC 59.873 43.478 0.00 0.00 36.40 3.86
558 561 1.825090 ATCAATTCAGCACCGCTTCA 58.175 45.000 0.00 0.00 36.40 3.02
559 562 1.825090 TCAATTCAGCACCGCTTCAT 58.175 45.000 0.00 0.00 36.40 2.57
560 563 1.739466 TCAATTCAGCACCGCTTCATC 59.261 47.619 0.00 0.00 36.40 2.92
561 564 1.469703 CAATTCAGCACCGCTTCATCA 59.530 47.619 0.00 0.00 36.40 3.07
562 565 1.825090 ATTCAGCACCGCTTCATCAA 58.175 45.000 0.00 0.00 36.40 2.57
563 566 0.874390 TTCAGCACCGCTTCATCAAC 59.126 50.000 0.00 0.00 36.40 3.18
564 567 0.035317 TCAGCACCGCTTCATCAACT 59.965 50.000 0.00 0.00 36.40 3.16
565 568 0.167470 CAGCACCGCTTCATCAACTG 59.833 55.000 0.00 0.00 36.40 3.16
566 569 0.035317 AGCACCGCTTCATCAACTGA 59.965 50.000 0.00 0.00 33.89 3.41
567 570 0.874390 GCACCGCTTCATCAACTGAA 59.126 50.000 0.00 0.00 41.61 3.02
568 571 1.266718 GCACCGCTTCATCAACTGAAA 59.733 47.619 0.00 0.00 43.20 2.69
569 572 2.287547 GCACCGCTTCATCAACTGAAAA 60.288 45.455 0.00 0.00 43.20 2.29
570 573 3.612479 GCACCGCTTCATCAACTGAAAAT 60.612 43.478 0.00 0.00 43.20 1.82
571 574 4.379394 GCACCGCTTCATCAACTGAAAATA 60.379 41.667 0.00 0.00 43.20 1.40
572 575 5.677091 GCACCGCTTCATCAACTGAAAATAT 60.677 40.000 0.00 0.00 43.20 1.28
573 576 6.458206 GCACCGCTTCATCAACTGAAAATATA 60.458 38.462 0.00 0.00 43.20 0.86
574 577 6.907212 CACCGCTTCATCAACTGAAAATATAC 59.093 38.462 0.00 0.00 43.20 1.47
575 578 6.823689 ACCGCTTCATCAACTGAAAATATACT 59.176 34.615 0.00 0.00 43.20 2.12
576 579 7.985184 ACCGCTTCATCAACTGAAAATATACTA 59.015 33.333 0.00 0.00 43.20 1.82
577 580 8.276325 CCGCTTCATCAACTGAAAATATACTAC 58.724 37.037 0.00 0.00 43.20 2.73
578 581 9.035607 CGCTTCATCAACTGAAAATATACTACT 57.964 33.333 0.00 0.00 43.20 2.57
588 591 9.654663 ACTGAAAATATACTACTCTGTTTGACC 57.345 33.333 0.00 0.00 0.00 4.02
589 592 9.099454 CTGAAAATATACTACTCTGTTTGACCC 57.901 37.037 0.00 0.00 0.00 4.46
590 593 8.598916 TGAAAATATACTACTCTGTTTGACCCA 58.401 33.333 0.00 0.00 0.00 4.51
591 594 9.444600 GAAAATATACTACTCTGTTTGACCCAA 57.555 33.333 0.00 0.00 0.00 4.12
592 595 9.802039 AAAATATACTACTCTGTTTGACCCAAA 57.198 29.630 0.00 0.00 0.00 3.28
593 596 9.975218 AAATATACTACTCTGTTTGACCCAAAT 57.025 29.630 0.00 0.00 35.74 2.32
594 597 9.975218 AATATACTACTCTGTTTGACCCAAATT 57.025 29.630 0.00 0.00 35.74 1.82
597 600 7.506328 ACTACTCTGTTTGACCCAAATTAAC 57.494 36.000 0.00 0.00 35.74 2.01
598 601 7.287810 ACTACTCTGTTTGACCCAAATTAACT 58.712 34.615 0.00 0.00 35.74 2.24
599 602 6.391227 ACTCTGTTTGACCCAAATTAACTG 57.609 37.500 0.00 0.00 35.74 3.16
600 603 6.126409 ACTCTGTTTGACCCAAATTAACTGA 58.874 36.000 0.00 0.00 35.74 3.41
601 604 6.777580 ACTCTGTTTGACCCAAATTAACTGAT 59.222 34.615 0.00 0.00 35.74 2.90
602 605 7.942341 ACTCTGTTTGACCCAAATTAACTGATA 59.058 33.333 0.00 0.00 35.74 2.15
603 606 8.106247 TCTGTTTGACCCAAATTAACTGATAC 57.894 34.615 0.00 0.00 35.74 2.24
604 607 7.721842 TCTGTTTGACCCAAATTAACTGATACA 59.278 33.333 0.00 0.00 35.74 2.29
605 608 8.239038 TGTTTGACCCAAATTAACTGATACAA 57.761 30.769 0.00 0.00 35.74 2.41
606 609 8.138712 TGTTTGACCCAAATTAACTGATACAAC 58.861 33.333 0.00 0.00 35.74 3.32
607 610 8.357402 GTTTGACCCAAATTAACTGATACAACT 58.643 33.333 0.00 0.00 35.74 3.16
608 611 7.447374 TGACCCAAATTAACTGATACAACTG 57.553 36.000 0.00 0.00 0.00 3.16
609 612 7.001674 TGACCCAAATTAACTGATACAACTGT 58.998 34.615 0.00 0.00 0.00 3.55
610 613 8.158132 TGACCCAAATTAACTGATACAACTGTA 58.842 33.333 0.00 0.00 34.67 2.74
611 614 8.561738 ACCCAAATTAACTGATACAACTGTAG 57.438 34.615 0.00 0.00 33.52 2.74
612 615 8.161425 ACCCAAATTAACTGATACAACTGTAGT 58.839 33.333 0.00 0.00 33.52 2.73
613 616 9.661563 CCCAAATTAACTGATACAACTGTAGTA 57.338 33.333 0.00 0.00 33.52 1.82
621 624 8.632906 ACTGATACAACTGTAGTAGTACAACT 57.367 34.615 11.49 0.00 38.73 3.16
622 625 9.075678 ACTGATACAACTGTAGTAGTACAACTT 57.924 33.333 11.49 3.71 38.73 2.66
623 626 9.909644 CTGATACAACTGTAGTAGTACAACTTT 57.090 33.333 11.49 3.16 38.73 2.66
663 666 8.519492 AAAGTTGTGTCAATTTATTTGGATCG 57.481 30.769 0.00 0.00 35.92 3.69
664 667 6.620678 AGTTGTGTCAATTTATTTGGATCGG 58.379 36.000 0.00 0.00 35.92 4.18
665 668 6.432783 AGTTGTGTCAATTTATTTGGATCGGA 59.567 34.615 0.00 0.00 35.92 4.55
666 669 6.189677 TGTGTCAATTTATTTGGATCGGAC 57.810 37.500 0.00 0.00 35.92 4.79
667 670 5.707764 TGTGTCAATTTATTTGGATCGGACA 59.292 36.000 0.00 0.00 35.92 4.02
668 671 6.128035 TGTGTCAATTTATTTGGATCGGACAG 60.128 38.462 0.00 0.00 35.92 3.51
669 672 6.093495 GTGTCAATTTATTTGGATCGGACAGA 59.907 38.462 0.00 0.00 35.92 3.41
670 673 6.316140 TGTCAATTTATTTGGATCGGACAGAG 59.684 38.462 0.00 0.00 35.92 3.35
671 674 6.316390 GTCAATTTATTTGGATCGGACAGAGT 59.684 38.462 0.00 0.00 35.92 3.24
672 675 7.494625 GTCAATTTATTTGGATCGGACAGAGTA 59.505 37.037 0.00 0.00 35.92 2.59
673 676 8.210946 TCAATTTATTTGGATCGGACAGAGTAT 58.789 33.333 0.00 0.00 35.92 2.12
674 677 9.489084 CAATTTATTTGGATCGGACAGAGTATA 57.511 33.333 0.00 0.00 0.00 1.47
680 683 9.877178 ATTTGGATCGGACAGAGTATATAATTC 57.123 33.333 0.00 0.00 0.00 2.17
681 684 8.417273 TTGGATCGGACAGAGTATATAATTCA 57.583 34.615 0.00 0.00 0.00 2.57
682 685 8.056407 TGGATCGGACAGAGTATATAATTCAG 57.944 38.462 0.00 0.00 0.00 3.02
683 686 6.975772 GGATCGGACAGAGTATATAATTCAGC 59.024 42.308 0.00 0.00 0.00 4.26
684 687 5.939457 TCGGACAGAGTATATAATTCAGCG 58.061 41.667 0.00 0.00 0.00 5.18
685 688 4.559251 CGGACAGAGTATATAATTCAGCGC 59.441 45.833 0.00 0.00 0.00 5.92
686 689 4.865365 GGACAGAGTATATAATTCAGCGCC 59.135 45.833 2.29 0.00 0.00 6.53
687 690 4.486090 ACAGAGTATATAATTCAGCGCCG 58.514 43.478 2.29 0.00 0.00 6.46
688 691 3.304559 CAGAGTATATAATTCAGCGCCGC 59.695 47.826 2.29 0.00 0.00 6.53
689 692 3.193691 AGAGTATATAATTCAGCGCCGCT 59.806 43.478 5.39 5.39 40.77 5.52
690 693 3.512680 AGTATATAATTCAGCGCCGCTC 58.487 45.455 9.54 0.00 36.40 5.03
691 694 2.751166 ATATAATTCAGCGCCGCTCT 57.249 45.000 9.54 0.00 36.40 4.09
692 695 3.868757 ATATAATTCAGCGCCGCTCTA 57.131 42.857 9.54 0.00 36.40 2.43
693 696 2.751166 ATAATTCAGCGCCGCTCTAT 57.249 45.000 9.54 2.03 36.40 1.98
694 697 2.065993 TAATTCAGCGCCGCTCTATC 57.934 50.000 9.54 0.00 36.40 2.08
695 698 0.941463 AATTCAGCGCCGCTCTATCG 60.941 55.000 9.54 0.00 36.40 2.92
696 699 1.796190 ATTCAGCGCCGCTCTATCGA 61.796 55.000 9.54 0.00 36.40 3.59
697 700 2.393989 TTCAGCGCCGCTCTATCGAG 62.394 60.000 9.54 0.00 36.40 4.04
698 701 2.592001 AGCGCCGCTCTATCGAGA 60.592 61.111 5.39 0.00 39.74 4.04
699 702 2.187493 AGCGCCGCTCTATCGAGAA 61.187 57.895 5.39 0.00 39.74 2.87
700 703 1.299165 GCGCCGCTCTATCGAGAAA 60.299 57.895 0.00 0.00 39.74 2.52
701 704 0.870307 GCGCCGCTCTATCGAGAAAA 60.870 55.000 0.00 0.00 39.74 2.29
702 705 1.556564 CGCCGCTCTATCGAGAAAAA 58.443 50.000 0.00 0.00 39.74 1.94
720 723 1.846541 AAAACAATTCAACACCGGCG 58.153 45.000 0.00 0.00 0.00 6.46
721 724 1.025812 AAACAATTCAACACCGGCGA 58.974 45.000 9.30 0.00 0.00 5.54
722 725 0.591170 AACAATTCAACACCGGCGAG 59.409 50.000 9.30 2.48 0.00 5.03
723 726 0.250124 ACAATTCAACACCGGCGAGA 60.250 50.000 9.30 0.00 0.00 4.04
724 727 0.443869 CAATTCAACACCGGCGAGAG 59.556 55.000 9.30 0.00 0.00 3.20
758 761 1.476891 CAGCCAAGAAGTACGCCTCTA 59.523 52.381 0.00 0.00 0.00 2.43
760 763 1.477295 GCCAAGAAGTACGCCTCTAGT 59.523 52.381 0.00 0.00 0.00 2.57
772 775 2.026905 GCCTCTAGTGCAGTAGGAGCT 61.027 57.143 24.97 2.42 0.00 4.09
775 778 3.756434 CCTCTAGTGCAGTAGGAGCTATC 59.244 52.174 24.97 0.00 0.00 2.08
807 810 1.227380 CGCTCAAATCCTCCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
836 839 2.083774 TCATCGCCAAACATGTCCTTC 58.916 47.619 0.00 0.00 0.00 3.46
837 840 1.133025 CATCGCCAAACATGTCCTTCC 59.867 52.381 0.00 0.00 0.00 3.46
843 846 3.769300 GCCAAACATGTCCTTCCCTTTAT 59.231 43.478 0.00 0.00 0.00 1.40
845 848 4.402474 CCAAACATGTCCTTCCCTTTATCC 59.598 45.833 0.00 0.00 0.00 2.59
847 850 3.197983 ACATGTCCTTCCCTTTATCCCA 58.802 45.455 0.00 0.00 0.00 4.37
853 856 5.023452 GTCCTTCCCTTTATCCCAAACAAT 58.977 41.667 0.00 0.00 0.00 2.71
862 865 7.360522 CCCTTTATCCCAAACAATTTTTAACGC 60.361 37.037 0.00 0.00 0.00 4.84
868 871 6.017852 TCCCAAACAATTTTTAACGCCATTTC 60.018 34.615 0.00 0.00 0.00 2.17
989 993 5.530519 TCTGTCAACGAATCATGTAAAGC 57.469 39.130 0.00 0.00 0.00 3.51
1068 1075 1.512310 CTTGTCGACGTCGGAGCTC 60.512 63.158 35.05 20.34 40.29 4.09
1119 1126 1.183030 TCACCGATGTCCTTGACCGT 61.183 55.000 0.00 0.00 0.00 4.83
1125 1132 2.352814 CGATGTCCTTGACCGTCTCTTT 60.353 50.000 0.00 0.00 0.00 2.52
1195 1202 2.815647 GCTTCTTCCTCGCCACCG 60.816 66.667 0.00 0.00 0.00 4.94
1240 1247 0.321671 GCTCAGAGCCACAAGGTACA 59.678 55.000 11.84 0.00 34.48 2.90
1250 1257 0.595095 ACAAGGTACACCGACGAGTC 59.405 55.000 0.00 0.00 42.08 3.36
1336 1343 3.190383 TCTCATCCAAACTCCTCTCCA 57.810 47.619 0.00 0.00 0.00 3.86
1337 1344 2.834549 TCTCATCCAAACTCCTCTCCAC 59.165 50.000 0.00 0.00 0.00 4.02
1414 1422 2.573462 ACAACAGATGCACACCTCCTAT 59.427 45.455 0.00 0.00 0.00 2.57
1660 1706 1.000396 AGCCCCTTGGTGAAGATGC 60.000 57.895 0.00 0.00 0.00 3.91
1766 1812 1.989864 CACGTGCTTTGTACGCTGATA 59.010 47.619 0.82 0.00 44.79 2.15
2591 2637 2.010497 GAACAAGGAGGAATCGGCTTC 58.990 52.381 0.00 0.00 0.00 3.86
2632 2678 2.829120 GAGAGCAAGTAGGAGGTGAACT 59.171 50.000 0.00 0.00 0.00 3.01
2812 2858 2.311070 TGGATGGGCCATGAGCTGT 61.311 57.895 26.77 0.00 43.33 4.40
2886 2933 2.568546 ATGTCTCCCCATAGTCCACA 57.431 50.000 0.00 0.00 0.00 4.17
2966 3013 1.826054 CGGGGTTGAACTTGTGGCA 60.826 57.895 0.00 0.00 0.00 4.92
3010 3057 1.014564 GTTAGCACCTGCAGGACGAC 61.015 60.000 39.19 25.32 45.16 4.34
3063 3110 4.568359 AGCGCATTGTACTCTTCTAACATG 59.432 41.667 11.47 0.00 0.00 3.21
3103 3150 2.629137 TCCTTGAGTGCTACACGGTAAA 59.371 45.455 0.00 0.00 39.64 2.01
3301 3354 4.839706 GGGCCGGTTGCATGGGAT 62.840 66.667 1.90 0.00 43.89 3.85
3327 3380 2.042639 GGGATTGGCTGCATGGGT 60.043 61.111 0.50 0.00 0.00 4.51
3647 3904 3.411517 CGGCAGGGATTGGAGGGT 61.412 66.667 0.00 0.00 0.00 4.34
3648 3905 2.983879 CGGCAGGGATTGGAGGGTT 61.984 63.158 0.00 0.00 0.00 4.11
3697 3954 1.290203 AGGTGCGCTCGTCAAATATG 58.710 50.000 9.73 0.00 0.00 1.78
3994 4256 1.032014 AATATTCGGGTGGCATGTGC 58.968 50.000 0.00 0.00 41.14 4.57
4003 4265 3.726517 GGCATGTGCGCGTGAACT 61.727 61.111 23.37 0.00 43.26 3.01
4160 4423 1.169661 TTCGCCACCATTGTCACACC 61.170 55.000 0.00 0.00 0.00 4.16
4262 4525 4.120589 GTTGCGTAATGGAAAAACCCAAA 58.879 39.130 0.00 0.00 40.04 3.28
4553 4816 3.342627 CGCCGGTGCTTGAAACGA 61.343 61.111 0.00 0.00 34.43 3.85
4694 4960 9.912634 CAAAAGACACAATACACCAATTATCTT 57.087 29.630 0.00 0.00 0.00 2.40
5122 5394 1.908340 GCCACTGCTGAGGAGATGGT 61.908 60.000 8.31 0.00 33.53 3.55
5124 5396 0.612229 CACTGCTGAGGAGATGGTGT 59.388 55.000 8.31 0.00 0.00 4.16
5264 5536 4.758251 CACGGCCATGGTCAGCGA 62.758 66.667 18.31 0.00 0.00 4.93
5697 5972 2.436292 CAGCTGCTGCCAGAGGTC 60.436 66.667 17.73 0.00 41.77 3.85
5896 6171 0.669625 GGCGCCACTTCGAGTAGTTT 60.670 55.000 24.80 0.00 0.00 2.66
6507 6874 0.250989 GGTCGGGTTTCCAACATCCA 60.251 55.000 0.00 0.00 0.00 3.41
6530 6897 4.473520 CGCGGCCACCTCATCCTT 62.474 66.667 2.24 0.00 0.00 3.36
6542 6909 2.310052 CCTCATCCTTCTCAAAAGGGGT 59.690 50.000 4.10 0.00 37.99 4.95
6543 6910 3.523564 CCTCATCCTTCTCAAAAGGGGTA 59.476 47.826 4.10 0.00 37.99 3.69
6544 6911 4.166919 CCTCATCCTTCTCAAAAGGGGTAT 59.833 45.833 4.10 0.00 37.99 2.73
6545 6912 5.372373 CTCATCCTTCTCAAAAGGGGTATC 58.628 45.833 4.10 0.00 37.99 2.24
6546 6913 4.788075 TCATCCTTCTCAAAAGGGGTATCA 59.212 41.667 4.10 0.00 37.99 2.15
6739 7107 4.083862 GACCCTCAGTGGACGCCC 62.084 72.222 0.00 0.00 38.35 6.13
6784 7152 3.575630 CTTTCTCTCAACCGTGATCGAA 58.424 45.455 0.00 0.00 39.71 3.71
6842 7210 2.048222 TGCTGGAGTTTCGCCTCG 60.048 61.111 0.00 0.00 31.98 4.63
6879 7250 0.466007 CATTCATCCCATGCGGTCCA 60.466 55.000 0.00 0.00 0.00 4.02
6901 7272 4.974721 CTGCCCACAACCGGCCTT 62.975 66.667 0.00 0.00 46.48 4.35
6988 7359 4.834453 CGGCTGCTCCTCCTGCTG 62.834 72.222 0.00 0.00 0.00 4.41
7061 7432 1.595382 GTGCAGAAGGTGAGCGTGT 60.595 57.895 0.00 0.00 0.00 4.49
7063 7434 0.319555 TGCAGAAGGTGAGCGTGTAC 60.320 55.000 0.00 0.00 0.00 2.90
7086 7457 1.202973 CTCGACATGGCGACGATGAC 61.203 60.000 22.34 1.39 40.87 3.06
7100 7471 2.303549 GATGACGTGGGAGGAGCTGG 62.304 65.000 0.00 0.00 0.00 4.85
7102 7473 2.997897 ACGTGGGAGGAGCTGGAC 60.998 66.667 0.00 0.00 0.00 4.02
7103 7474 2.997315 CGTGGGAGGAGCTGGACA 60.997 66.667 0.00 0.00 0.00 4.02
7147 7518 3.003763 GACTGCCCCGGGAGAAGT 61.004 66.667 26.32 22.21 37.03 3.01
7204 7575 0.320374 TGGCCAACCGAGTCTACTTG 59.680 55.000 0.61 0.00 39.70 3.16
7212 7583 1.884756 CGAGTCTACTTGCTCGTGTC 58.115 55.000 5.88 0.00 46.45 3.67
7213 7584 1.787281 CGAGTCTACTTGCTCGTGTCG 60.787 57.143 5.88 0.00 46.45 4.35
7216 7587 0.520404 TCTACTTGCTCGTGTCGTCC 59.480 55.000 0.00 0.00 0.00 4.79
7218 7589 0.885879 TACTTGCTCGTGTCGTCCAT 59.114 50.000 0.00 0.00 0.00 3.41
7297 7668 0.037697 ACAAGTGCTACGATTCGCCA 60.038 50.000 5.86 0.00 0.00 5.69
7327 7698 0.824109 TCATCTCCCATGACCGTGAC 59.176 55.000 0.00 0.00 0.00 3.67
7378 7749 3.679025 CGAGCCTCTTCTATCAATCATGC 59.321 47.826 0.00 0.00 0.00 4.06
7419 7790 6.604735 ATCAGATGATACCTTAAACGTTGC 57.395 37.500 0.00 0.00 32.01 4.17
7420 7791 4.873827 TCAGATGATACCTTAAACGTTGCC 59.126 41.667 0.00 0.00 0.00 4.52
7423 7794 3.741249 TGATACCTTAAACGTTGCCACA 58.259 40.909 0.00 0.00 0.00 4.17
7425 7796 4.214545 TGATACCTTAAACGTTGCCACAAG 59.785 41.667 0.00 1.00 0.00 3.16
7430 7801 0.099791 AAACGTTGCCACAAGAACCG 59.900 50.000 0.00 0.00 0.00 4.44
7432 7803 1.278637 CGTTGCCACAAGAACCGAC 59.721 57.895 0.00 0.00 0.00 4.79
7613 7988 4.281435 ACAGTTTCATGCATGTTGAATGGA 59.719 37.500 25.43 1.24 34.10 3.41
7635 8010 2.354103 CCTTCGATGAGGTGACATGTGT 60.354 50.000 1.15 0.00 31.89 3.72
7636 8011 2.368655 TCGATGAGGTGACATGTGTG 57.631 50.000 1.15 0.00 0.00 3.82
7644 8019 3.869832 GAGGTGACATGTGTGATGAGATG 59.130 47.826 1.15 0.00 0.00 2.90
7645 8020 3.516700 AGGTGACATGTGTGATGAGATGA 59.483 43.478 1.15 0.00 0.00 2.92
7646 8021 4.019950 AGGTGACATGTGTGATGAGATGAA 60.020 41.667 1.15 0.00 0.00 2.57
7653 8028 6.880529 ACATGTGTGATGAGATGAAATGTGTA 59.119 34.615 0.00 0.00 0.00 2.90
7664 8039 7.924947 TGAGATGAAATGTGTACATGAGATCTC 59.075 37.037 16.21 16.21 39.42 2.75
7671 8046 8.723942 AATGTGTACATGAGATCTCCTAAAAC 57.276 34.615 20.03 11.71 36.56 2.43
7674 8049 8.375506 TGTGTACATGAGATCTCCTAAAACTTT 58.624 33.333 20.03 0.00 0.00 2.66
7684 8059 9.232473 AGATCTCCTAAAACTTTTTCACATACC 57.768 33.333 0.00 0.00 0.00 2.73
7688 8063 8.485578 TCCTAAAACTTTTTCACATACCCATT 57.514 30.769 0.00 0.00 0.00 3.16
7712 8087 0.259647 TGGGGCCTTTGATGAGATGG 59.740 55.000 0.84 0.00 0.00 3.51
7715 8090 1.700955 GGCCTTTGATGAGATGGCAT 58.299 50.000 0.00 0.00 44.85 4.40
7718 8093 4.568380 GGGCCTTTGATGAGATGGCATATA 60.568 45.833 0.84 0.00 44.85 0.86
7719 8094 4.397417 GGCCTTTGATGAGATGGCATATAC 59.603 45.833 0.00 0.00 44.85 1.47
7720 8095 5.005740 GCCTTTGATGAGATGGCATATACA 58.994 41.667 0.00 1.37 42.79 2.29
7721 8096 5.106396 GCCTTTGATGAGATGGCATATACAC 60.106 44.000 0.00 0.00 42.79 2.90
7722 8097 5.999600 CCTTTGATGAGATGGCATATACACA 59.000 40.000 0.00 0.00 0.00 3.72
7723 8098 6.657966 CCTTTGATGAGATGGCATATACACAT 59.342 38.462 0.00 0.00 0.00 3.21
7724 8099 7.361799 CCTTTGATGAGATGGCATATACACATG 60.362 40.741 0.00 0.00 0.00 3.21
7725 8100 6.117975 TGATGAGATGGCATATACACATGT 57.882 37.500 0.00 0.00 0.00 3.21
7726 8101 6.536447 TGATGAGATGGCATATACACATGTT 58.464 36.000 0.00 0.00 0.00 2.71
7727 8102 7.678837 TGATGAGATGGCATATACACATGTTA 58.321 34.615 0.00 0.00 0.00 2.41
7728 8103 7.603784 TGATGAGATGGCATATACACATGTTAC 59.396 37.037 0.00 0.00 0.00 2.50
7729 8104 5.925969 TGAGATGGCATATACACATGTTACG 59.074 40.000 0.00 0.00 0.00 3.18
7730 8105 6.096673 AGATGGCATATACACATGTTACGA 57.903 37.500 0.00 0.00 0.00 3.43
7797 8172 5.357032 AGGATCCATTATTTCGTTGTGAACC 59.643 40.000 15.82 0.00 35.97 3.62
7800 8175 4.457603 TCCATTATTTCGTTGTGAACCAGG 59.542 41.667 0.00 0.00 35.97 4.45
7802 8177 2.649531 ATTTCGTTGTGAACCAGGGA 57.350 45.000 0.00 0.00 35.97 4.20
7829 8204 3.903783 CGTGGTTCGGGCATGAAT 58.096 55.556 0.00 0.00 35.71 2.57
7859 8234 9.806203 CAAATTCTTGTCATATAAGCAATCCAA 57.194 29.630 0.00 0.00 0.00 3.53
7912 8292 2.765699 TCAGTACTAGATGCATGCACCA 59.234 45.455 25.37 10.06 0.00 4.17
7917 8297 0.536724 TAGATGCATGCACCACGTCT 59.463 50.000 25.37 22.72 34.21 4.18
7918 8298 0.742281 AGATGCATGCACCACGTCTC 60.742 55.000 25.37 14.85 0.00 3.36
7920 8300 0.321919 ATGCATGCACCACGTCTCTT 60.322 50.000 25.37 0.00 0.00 2.85
7950 8331 1.264020 GACAATTGCAGTGTTCAGCGA 59.736 47.619 5.05 0.00 0.00 4.93
7953 8334 1.812235 ATTGCAGTGTTCAGCGATGA 58.188 45.000 0.00 0.00 33.70 2.92
7971 8355 4.489810 GATGATCGAGTGTCAGTTCAAGT 58.510 43.478 0.00 0.00 0.00 3.16
7992 8376 6.899393 AGTGATTTGCAAATCCAAAGACTA 57.101 33.333 36.94 20.52 43.19 2.59
7993 8377 6.681777 AGTGATTTGCAAATCCAAAGACTAC 58.318 36.000 36.94 27.77 43.19 2.73
7997 8381 2.734606 TGCAAATCCAAAGACTACGTCG 59.265 45.455 0.00 0.00 37.67 5.12
8021 8405 0.458370 CGCGGTCACAGTCATGATCA 60.458 55.000 0.00 0.00 29.46 2.92
8036 8420 3.859745 TGATCAATCAGCGCGTTAATC 57.140 42.857 8.43 0.49 32.11 1.75
8042 8426 4.808895 TCAATCAGCGCGTTAATCAAGTAT 59.191 37.500 8.43 0.00 0.00 2.12
8137 8529 5.123805 TCATACGCACCGCATTAGTATAA 57.876 39.130 0.00 0.00 0.00 0.98
8138 8530 5.158494 TCATACGCACCGCATTAGTATAAG 58.842 41.667 0.00 0.00 0.00 1.73
8139 8531 3.720949 ACGCACCGCATTAGTATAAGA 57.279 42.857 0.00 0.00 0.00 2.10
8202 8594 8.066595 CACTAATCAAATCACCTCATTTCGATC 58.933 37.037 0.00 0.00 0.00 3.69
8230 8622 6.268158 TCCCTTACAATTGTAAACCCCTTTTC 59.732 38.462 26.60 0.00 39.70 2.29
8277 8670 7.114529 CCGGATAATTTACAGAACATCGTAGTC 59.885 40.741 0.00 0.00 0.00 2.59
8278 8671 7.646526 CGGATAATTTACAGAACATCGTAGTCA 59.353 37.037 0.00 0.00 0.00 3.41
8282 8675 8.771920 AATTTACAGAACATCGTAGTCAATCA 57.228 30.769 0.00 0.00 0.00 2.57
8285 8678 5.538118 ACAGAACATCGTAGTCAATCAACA 58.462 37.500 0.00 0.00 0.00 3.33
8286 8679 6.166279 ACAGAACATCGTAGTCAATCAACAT 58.834 36.000 0.00 0.00 0.00 2.71
8287 8680 7.320399 ACAGAACATCGTAGTCAATCAACATA 58.680 34.615 0.00 0.00 0.00 2.29
8288 8681 7.981789 ACAGAACATCGTAGTCAATCAACATAT 59.018 33.333 0.00 0.00 0.00 1.78
8289 8682 8.483218 CAGAACATCGTAGTCAATCAACATATC 58.517 37.037 0.00 0.00 0.00 1.63
8290 8683 8.197439 AGAACATCGTAGTCAATCAACATATCA 58.803 33.333 0.00 0.00 0.00 2.15
8292 8685 6.925718 ACATCGTAGTCAATCAACATATCAGG 59.074 38.462 0.00 0.00 0.00 3.86
8294 8687 7.107639 TCGTAGTCAATCAACATATCAGGAA 57.892 36.000 0.00 0.00 0.00 3.36
8295 8688 7.726216 TCGTAGTCAATCAACATATCAGGAAT 58.274 34.615 0.00 0.00 0.00 3.01
8296 8689 7.867909 TCGTAGTCAATCAACATATCAGGAATC 59.132 37.037 0.00 0.00 0.00 2.52
8297 8690 7.653311 CGTAGTCAATCAACATATCAGGAATCA 59.347 37.037 0.00 0.00 0.00 2.57
8299 8692 6.996879 AGTCAATCAACATATCAGGAATCAGG 59.003 38.462 0.00 0.00 0.00 3.86
8301 8694 6.994496 TCAATCAACATATCAGGAATCAGGAC 59.006 38.462 0.00 0.00 0.00 3.85
8304 8697 5.370584 TCAACATATCAGGAATCAGGACCAT 59.629 40.000 0.00 0.00 0.00 3.55
8305 8698 5.495926 ACATATCAGGAATCAGGACCATC 57.504 43.478 0.00 0.00 0.00 3.51
8306 8699 4.288105 ACATATCAGGAATCAGGACCATCC 59.712 45.833 0.00 0.00 36.58 3.51
8307 8700 1.123077 TCAGGAATCAGGACCATCCG 58.877 55.000 0.00 0.00 42.75 4.18
8308 8701 1.123077 CAGGAATCAGGACCATCCGA 58.877 55.000 0.00 0.00 42.75 4.55
8309 8702 1.696336 CAGGAATCAGGACCATCCGAT 59.304 52.381 0.00 0.00 42.75 4.18
8310 8703 1.974236 AGGAATCAGGACCATCCGATC 59.026 52.381 0.00 0.00 42.75 3.69
8311 8704 1.694150 GGAATCAGGACCATCCGATCA 59.306 52.381 0.00 0.00 42.75 2.92
8312 8705 2.104792 GGAATCAGGACCATCCGATCAA 59.895 50.000 0.00 0.00 42.75 2.57
8323 8716 6.207417 GGACCATCCGATCAAATCAAATATGT 59.793 38.462 0.00 0.00 0.00 2.29
8346 8739 9.670719 ATGTATTCGCTGTATATATCTCAATCG 57.329 33.333 0.00 0.00 0.00 3.34
8347 8740 8.889717 TGTATTCGCTGTATATATCTCAATCGA 58.110 33.333 0.00 0.00 0.00 3.59
8352 8745 6.975197 CGCTGTATATATCTCAATCGAATGGT 59.025 38.462 0.00 0.00 0.00 3.55
8354 8747 7.254252 GCTGTATATATCTCAATCGAATGGTGC 60.254 40.741 0.00 0.00 0.00 5.01
8355 8748 7.610865 TGTATATATCTCAATCGAATGGTGCA 58.389 34.615 0.00 0.00 0.00 4.57
8382 8780 0.107456 CTCCGGCATATTCACCTGCT 59.893 55.000 0.00 0.00 38.45 4.24
8387 8785 1.506493 GCATATTCACCTGCTCTCCG 58.494 55.000 0.00 0.00 35.49 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.000521 CCATTCTCAGGGCTTGCCA 60.001 57.895 14.04 0.00 0.00 4.92
6 7 1.755783 CCCATTCTCAGGGCTTGCC 60.756 63.158 2.49 2.49 39.96 4.52
7 8 1.034292 GTCCCATTCTCAGGGCTTGC 61.034 60.000 0.00 0.00 46.36 4.01
8 9 0.394899 GGTCCCATTCTCAGGGCTTG 60.395 60.000 0.00 0.00 46.36 4.01
9 10 0.551131 AGGTCCCATTCTCAGGGCTT 60.551 55.000 0.00 0.00 46.36 4.35
10 11 0.985490 GAGGTCCCATTCTCAGGGCT 60.985 60.000 0.00 0.00 46.36 5.19
11 12 1.529309 GAGGTCCCATTCTCAGGGC 59.471 63.158 0.00 0.00 46.36 5.19
23 24 0.251832 TCTGTCTCAGTGGGAGGTCC 60.252 60.000 0.00 0.00 44.19 4.46
24 25 1.633774 TTCTGTCTCAGTGGGAGGTC 58.366 55.000 0.00 0.00 44.19 3.85
25 26 2.334006 ATTCTGTCTCAGTGGGAGGT 57.666 50.000 0.00 0.00 44.19 3.85
26 27 3.636300 CTCTATTCTGTCTCAGTGGGAGG 59.364 52.174 0.00 0.00 44.19 4.30
27 28 3.636300 CCTCTATTCTGTCTCAGTGGGAG 59.364 52.174 0.00 0.00 45.49 4.30
28 29 3.636679 CCTCTATTCTGTCTCAGTGGGA 58.363 50.000 0.00 0.00 32.61 4.37
29 30 2.102252 GCCTCTATTCTGTCTCAGTGGG 59.898 54.545 0.00 0.00 32.61 4.61
30 31 2.762887 TGCCTCTATTCTGTCTCAGTGG 59.237 50.000 0.00 0.00 32.61 4.00
31 32 4.462508 TTGCCTCTATTCTGTCTCAGTG 57.537 45.455 0.00 0.00 32.61 3.66
32 33 5.489792 TTTTGCCTCTATTCTGTCTCAGT 57.510 39.130 0.00 0.00 32.61 3.41
33 34 6.998968 AATTTTGCCTCTATTCTGTCTCAG 57.001 37.500 0.00 0.00 0.00 3.35
34 35 8.896744 CATAAATTTTGCCTCTATTCTGTCTCA 58.103 33.333 0.00 0.00 0.00 3.27
35 36 8.348507 CCATAAATTTTGCCTCTATTCTGTCTC 58.651 37.037 0.00 0.00 0.00 3.36
36 37 8.055181 TCCATAAATTTTGCCTCTATTCTGTCT 58.945 33.333 0.00 0.00 0.00 3.41
37 38 8.131731 GTCCATAAATTTTGCCTCTATTCTGTC 58.868 37.037 0.00 0.00 0.00 3.51
38 39 7.201732 CGTCCATAAATTTTGCCTCTATTCTGT 60.202 37.037 0.00 0.00 0.00 3.41
39 40 7.134815 CGTCCATAAATTTTGCCTCTATTCTG 58.865 38.462 0.00 0.00 0.00 3.02
40 41 6.828785 ACGTCCATAAATTTTGCCTCTATTCT 59.171 34.615 0.00 0.00 0.00 2.40
41 42 6.912591 CACGTCCATAAATTTTGCCTCTATTC 59.087 38.462 0.00 0.00 0.00 1.75
42 43 6.183360 CCACGTCCATAAATTTTGCCTCTATT 60.183 38.462 0.00 0.00 0.00 1.73
43 44 5.299279 CCACGTCCATAAATTTTGCCTCTAT 59.701 40.000 0.00 0.00 0.00 1.98
44 45 4.638421 CCACGTCCATAAATTTTGCCTCTA 59.362 41.667 0.00 0.00 0.00 2.43
45 46 3.443681 CCACGTCCATAAATTTTGCCTCT 59.556 43.478 0.00 0.00 0.00 3.69
46 47 3.442273 TCCACGTCCATAAATTTTGCCTC 59.558 43.478 0.00 0.00 0.00 4.70
47 48 3.426615 TCCACGTCCATAAATTTTGCCT 58.573 40.909 0.00 0.00 0.00 4.75
48 49 3.859411 TCCACGTCCATAAATTTTGCC 57.141 42.857 0.00 0.00 0.00 4.52
49 50 6.720012 AAAATCCACGTCCATAAATTTTGC 57.280 33.333 0.00 0.00 0.00 3.68
50 51 7.386299 TCCAAAAATCCACGTCCATAAATTTTG 59.614 33.333 0.00 0.00 35.88 2.44
51 52 7.445945 TCCAAAAATCCACGTCCATAAATTTT 58.554 30.769 0.00 0.00 0.00 1.82
52 53 6.998802 TCCAAAAATCCACGTCCATAAATTT 58.001 32.000 0.00 0.00 0.00 1.82
53 54 6.597832 TCCAAAAATCCACGTCCATAAATT 57.402 33.333 0.00 0.00 0.00 1.82
54 55 6.607198 AGATCCAAAAATCCACGTCCATAAAT 59.393 34.615 0.00 0.00 0.00 1.40
55 56 5.949354 AGATCCAAAAATCCACGTCCATAAA 59.051 36.000 0.00 0.00 0.00 1.40
56 57 5.356751 CAGATCCAAAAATCCACGTCCATAA 59.643 40.000 0.00 0.00 0.00 1.90
57 58 4.881273 CAGATCCAAAAATCCACGTCCATA 59.119 41.667 0.00 0.00 0.00 2.74
58 59 3.696051 CAGATCCAAAAATCCACGTCCAT 59.304 43.478 0.00 0.00 0.00 3.41
59 60 3.081061 CAGATCCAAAAATCCACGTCCA 58.919 45.455 0.00 0.00 0.00 4.02
60 61 2.423538 CCAGATCCAAAAATCCACGTCC 59.576 50.000 0.00 0.00 0.00 4.79
61 62 2.423538 CCCAGATCCAAAAATCCACGTC 59.576 50.000 0.00 0.00 0.00 4.34
62 63 2.041081 TCCCAGATCCAAAAATCCACGT 59.959 45.455 0.00 0.00 0.00 4.49
63 64 2.684881 CTCCCAGATCCAAAAATCCACG 59.315 50.000 0.00 0.00 0.00 4.94
64 65 2.428530 GCTCCCAGATCCAAAAATCCAC 59.571 50.000 0.00 0.00 0.00 4.02
65 66 2.042842 TGCTCCCAGATCCAAAAATCCA 59.957 45.455 0.00 0.00 0.00 3.41
66 67 2.738743 TGCTCCCAGATCCAAAAATCC 58.261 47.619 0.00 0.00 0.00 3.01
67 68 5.566230 GCATATGCTCCCAGATCCAAAAATC 60.566 44.000 20.64 0.00 38.21 2.17
68 69 4.282703 GCATATGCTCCCAGATCCAAAAAT 59.717 41.667 20.64 0.00 38.21 1.82
69 70 3.638160 GCATATGCTCCCAGATCCAAAAA 59.362 43.478 20.64 0.00 38.21 1.94
70 71 3.225104 GCATATGCTCCCAGATCCAAAA 58.775 45.455 20.64 0.00 38.21 2.44
71 72 2.867624 GCATATGCTCCCAGATCCAAA 58.132 47.619 20.64 0.00 38.21 3.28
72 73 2.574006 GCATATGCTCCCAGATCCAA 57.426 50.000 20.64 0.00 38.21 3.53
84 85 5.972107 AATGTTCATTAGGGAGCATATGC 57.028 39.130 20.36 20.36 37.69 3.14
88 89 8.980596 TCAATTTTAATGTTCATTAGGGAGCAT 58.019 29.630 5.58 0.00 39.94 3.79
89 90 8.359875 TCAATTTTAATGTTCATTAGGGAGCA 57.640 30.769 5.58 0.00 32.46 4.26
90 91 9.651913 TTTCAATTTTAATGTTCATTAGGGAGC 57.348 29.630 5.58 0.00 0.00 4.70
181 183 2.791004 GCATGAAAACTGTCAAGCACAC 59.209 45.455 0.00 0.00 40.93 3.82
260 263 9.793259 AATGTTACACTTAATTTTCTCTCAGGA 57.207 29.630 0.00 0.00 0.00 3.86
266 269 9.626045 CCTCCAAATGTTACACTTAATTTTCTC 57.374 33.333 0.00 0.00 0.00 2.87
289 292 5.813080 AGTCAAACGCCAAATATTACCTC 57.187 39.130 0.00 0.00 0.00 3.85
296 299 5.000012 ACAAACAAGTCAAACGCCAAATA 58.000 34.783 0.00 0.00 0.00 1.40
297 300 3.855858 ACAAACAAGTCAAACGCCAAAT 58.144 36.364 0.00 0.00 0.00 2.32
320 323 6.214191 TCAGCATTTTGGTCTGTGTAAAAA 57.786 33.333 0.00 0.00 0.00 1.94
321 324 5.843673 TCAGCATTTTGGTCTGTGTAAAA 57.156 34.783 0.00 0.00 0.00 1.52
322 325 5.359576 ACTTCAGCATTTTGGTCTGTGTAAA 59.640 36.000 0.00 0.00 0.00 2.01
323 326 4.887071 ACTTCAGCATTTTGGTCTGTGTAA 59.113 37.500 0.00 0.00 0.00 2.41
324 327 4.460263 ACTTCAGCATTTTGGTCTGTGTA 58.540 39.130 0.00 0.00 0.00 2.90
325 328 3.290710 ACTTCAGCATTTTGGTCTGTGT 58.709 40.909 0.00 0.00 0.00 3.72
326 329 3.996150 ACTTCAGCATTTTGGTCTGTG 57.004 42.857 0.00 0.00 0.00 3.66
331 334 3.321968 GGGAAGAACTTCAGCATTTTGGT 59.678 43.478 15.02 0.00 41.20 3.67
365 368 4.280436 TGTCACACCCAAATACTACCTG 57.720 45.455 0.00 0.00 0.00 4.00
366 369 4.986054 TTGTCACACCCAAATACTACCT 57.014 40.909 0.00 0.00 0.00 3.08
433 436 5.702865 GCATATGCTTCTGAGTGTCAAAAA 58.297 37.500 20.64 0.00 38.21 1.94
434 437 5.300969 GCATATGCTTCTGAGTGTCAAAA 57.699 39.130 20.64 0.00 38.21 2.44
435 438 4.952262 GCATATGCTTCTGAGTGTCAAA 57.048 40.909 20.64 0.00 38.21 2.69
456 459 5.942826 GGATATTCAATTTGGCTCTAGGGAG 59.057 44.000 0.00 0.00 42.18 4.30
457 460 5.513094 CGGATATTCAATTTGGCTCTAGGGA 60.513 44.000 0.00 0.00 0.00 4.20
458 461 4.697352 CGGATATTCAATTTGGCTCTAGGG 59.303 45.833 0.00 0.00 0.00 3.53
459 462 4.154918 GCGGATATTCAATTTGGCTCTAGG 59.845 45.833 0.00 0.00 0.00 3.02
460 463 4.756642 TGCGGATATTCAATTTGGCTCTAG 59.243 41.667 0.00 0.00 0.00 2.43
461 464 4.713553 TGCGGATATTCAATTTGGCTCTA 58.286 39.130 0.00 0.00 0.00 2.43
462 465 3.554934 TGCGGATATTCAATTTGGCTCT 58.445 40.909 0.00 0.00 0.00 4.09
463 466 3.988379 TGCGGATATTCAATTTGGCTC 57.012 42.857 0.00 0.00 0.00 4.70
464 467 4.734398 TTTGCGGATATTCAATTTGGCT 57.266 36.364 0.00 0.00 0.00 4.75
465 468 5.989551 ATTTTGCGGATATTCAATTTGGC 57.010 34.783 0.00 0.00 0.00 4.52
466 469 8.200364 AGAAATTTTGCGGATATTCAATTTGG 57.800 30.769 0.00 0.00 0.00 3.28
469 472 9.434420 TGAAAGAAATTTTGCGGATATTCAATT 57.566 25.926 0.00 0.00 0.00 2.32
470 473 9.603921 ATGAAAGAAATTTTGCGGATATTCAAT 57.396 25.926 0.00 0.00 0.00 2.57
476 479 9.897744 GATCATATGAAAGAAATTTTGCGGATA 57.102 29.630 9.99 0.00 0.00 2.59
477 480 8.415553 TGATCATATGAAAGAAATTTTGCGGAT 58.584 29.630 9.99 0.00 0.00 4.18
478 481 7.701924 GTGATCATATGAAAGAAATTTTGCGGA 59.298 33.333 9.99 0.00 0.00 5.54
479 482 7.703621 AGTGATCATATGAAAGAAATTTTGCGG 59.296 33.333 9.99 0.00 0.00 5.69
480 483 8.624701 AGTGATCATATGAAAGAAATTTTGCG 57.375 30.769 9.99 0.00 0.00 4.85
484 487 9.778993 CGTCAAGTGATCATATGAAAGAAATTT 57.221 29.630 9.99 0.00 0.00 1.82
485 488 8.400947 CCGTCAAGTGATCATATGAAAGAAATT 58.599 33.333 9.99 0.00 0.00 1.82
486 489 7.554118 ACCGTCAAGTGATCATATGAAAGAAAT 59.446 33.333 9.99 0.00 0.00 2.17
487 490 6.878923 ACCGTCAAGTGATCATATGAAAGAAA 59.121 34.615 9.99 0.00 0.00 2.52
488 491 6.406370 ACCGTCAAGTGATCATATGAAAGAA 58.594 36.000 9.99 0.00 0.00 2.52
489 492 5.977635 ACCGTCAAGTGATCATATGAAAGA 58.022 37.500 9.99 0.00 0.00 2.52
490 493 6.980978 AGTACCGTCAAGTGATCATATGAAAG 59.019 38.462 9.99 10.53 0.00 2.62
491 494 6.873997 AGTACCGTCAAGTGATCATATGAAA 58.126 36.000 9.99 0.00 0.00 2.69
492 495 6.465439 AGTACCGTCAAGTGATCATATGAA 57.535 37.500 9.99 0.00 0.00 2.57
493 496 6.996282 TCTAGTACCGTCAAGTGATCATATGA 59.004 38.462 8.10 8.10 0.00 2.15
494 497 7.041030 ACTCTAGTACCGTCAAGTGATCATATG 60.041 40.741 0.00 1.19 0.00 1.78
495 498 6.999272 ACTCTAGTACCGTCAAGTGATCATAT 59.001 38.462 0.00 0.00 0.00 1.78
496 499 6.260271 CACTCTAGTACCGTCAAGTGATCATA 59.740 42.308 0.00 0.00 36.99 2.15
497 500 5.066634 CACTCTAGTACCGTCAAGTGATCAT 59.933 44.000 0.00 0.00 36.99 2.45
498 501 4.395231 CACTCTAGTACCGTCAAGTGATCA 59.605 45.833 0.00 0.00 36.99 2.92
499 502 4.395542 ACACTCTAGTACCGTCAAGTGATC 59.604 45.833 14.61 0.00 37.97 2.92
500 503 4.333690 ACACTCTAGTACCGTCAAGTGAT 58.666 43.478 14.61 2.00 37.97 3.06
501 504 3.748083 ACACTCTAGTACCGTCAAGTGA 58.252 45.455 14.61 0.00 37.97 3.41
502 505 4.023450 TCAACACTCTAGTACCGTCAAGTG 60.023 45.833 8.90 8.90 39.90 3.16
503 506 4.139786 TCAACACTCTAGTACCGTCAAGT 58.860 43.478 0.00 0.00 0.00 3.16
504 507 4.724303 CTCAACACTCTAGTACCGTCAAG 58.276 47.826 0.00 0.00 0.00 3.02
505 508 3.057736 GCTCAACACTCTAGTACCGTCAA 60.058 47.826 0.00 0.00 0.00 3.18
506 509 2.486982 GCTCAACACTCTAGTACCGTCA 59.513 50.000 0.00 0.00 0.00 4.35
507 510 2.475852 CGCTCAACACTCTAGTACCGTC 60.476 54.545 0.00 0.00 0.00 4.79
508 511 1.467734 CGCTCAACACTCTAGTACCGT 59.532 52.381 0.00 0.00 0.00 4.83
509 512 1.736126 TCGCTCAACACTCTAGTACCG 59.264 52.381 0.00 0.00 0.00 4.02
510 513 3.377485 TGATCGCTCAACACTCTAGTACC 59.623 47.826 0.00 0.00 0.00 3.34
511 514 4.617808 TGATCGCTCAACACTCTAGTAC 57.382 45.455 0.00 0.00 0.00 2.73
512 515 4.700692 ACTTGATCGCTCAACACTCTAGTA 59.299 41.667 0.00 0.00 36.46 1.82
513 516 3.508012 ACTTGATCGCTCAACACTCTAGT 59.492 43.478 0.00 0.00 36.46 2.57
514 517 3.856521 CACTTGATCGCTCAACACTCTAG 59.143 47.826 0.00 0.00 36.46 2.43
515 518 3.255888 ACACTTGATCGCTCAACACTCTA 59.744 43.478 0.00 0.00 36.46 2.43
516 519 2.036475 ACACTTGATCGCTCAACACTCT 59.964 45.455 0.00 0.00 36.46 3.24
517 520 2.408050 ACACTTGATCGCTCAACACTC 58.592 47.619 0.00 0.00 36.46 3.51
518 521 2.533266 ACACTTGATCGCTCAACACT 57.467 45.000 0.00 0.00 36.46 3.55
519 522 4.388773 TGATAACACTTGATCGCTCAACAC 59.611 41.667 0.00 0.00 36.46 3.32
520 523 4.565022 TGATAACACTTGATCGCTCAACA 58.435 39.130 0.00 0.00 36.46 3.33
521 524 5.530519 TTGATAACACTTGATCGCTCAAC 57.469 39.130 0.00 0.00 36.46 3.18
522 525 6.371271 TGAATTGATAACACTTGATCGCTCAA 59.629 34.615 1.22 1.22 39.07 3.02
523 526 5.874261 TGAATTGATAACACTTGATCGCTCA 59.126 36.000 0.00 0.00 0.00 4.26
524 527 6.349973 TGAATTGATAACACTTGATCGCTC 57.650 37.500 0.00 0.00 0.00 5.03
525 528 5.220739 GCTGAATTGATAACACTTGATCGCT 60.221 40.000 0.00 0.00 0.00 4.93
526 529 4.966366 GCTGAATTGATAACACTTGATCGC 59.034 41.667 0.00 0.00 0.00 4.58
527 530 5.961843 GTGCTGAATTGATAACACTTGATCG 59.038 40.000 0.00 0.00 0.00 3.69
528 531 6.261118 GGTGCTGAATTGATAACACTTGATC 58.739 40.000 0.00 0.00 0.00 2.92
529 532 5.163723 CGGTGCTGAATTGATAACACTTGAT 60.164 40.000 0.00 0.00 0.00 2.57
530 533 4.154015 CGGTGCTGAATTGATAACACTTGA 59.846 41.667 0.00 0.00 0.00 3.02
531 534 4.406069 CGGTGCTGAATTGATAACACTTG 58.594 43.478 0.00 0.00 0.00 3.16
532 535 3.119849 GCGGTGCTGAATTGATAACACTT 60.120 43.478 0.00 0.00 0.00 3.16
533 536 2.420022 GCGGTGCTGAATTGATAACACT 59.580 45.455 0.00 0.00 0.00 3.55
534 537 2.420022 AGCGGTGCTGAATTGATAACAC 59.580 45.455 0.00 0.00 37.57 3.32
535 538 2.710377 AGCGGTGCTGAATTGATAACA 58.290 42.857 0.00 0.00 37.57 2.41
536 539 3.126858 TGAAGCGGTGCTGAATTGATAAC 59.873 43.478 0.00 0.00 39.62 1.89
537 540 3.342719 TGAAGCGGTGCTGAATTGATAA 58.657 40.909 0.00 0.00 39.62 1.75
538 541 2.984562 TGAAGCGGTGCTGAATTGATA 58.015 42.857 0.00 0.00 39.62 2.15
539 542 1.825090 TGAAGCGGTGCTGAATTGAT 58.175 45.000 0.00 0.00 39.62 2.57
540 543 1.739466 GATGAAGCGGTGCTGAATTGA 59.261 47.619 0.00 0.00 39.62 2.57
541 544 1.469703 TGATGAAGCGGTGCTGAATTG 59.530 47.619 0.00 0.00 39.62 2.32
542 545 1.825090 TGATGAAGCGGTGCTGAATT 58.175 45.000 0.00 0.00 39.62 2.17
543 546 1.470098 GTTGATGAAGCGGTGCTGAAT 59.530 47.619 0.00 0.00 39.62 2.57
544 547 0.874390 GTTGATGAAGCGGTGCTGAA 59.126 50.000 0.00 0.00 39.62 3.02
545 548 0.035317 AGTTGATGAAGCGGTGCTGA 59.965 50.000 0.00 0.00 39.62 4.26
546 549 0.167470 CAGTTGATGAAGCGGTGCTG 59.833 55.000 0.00 0.00 39.62 4.41
547 550 0.035317 TCAGTTGATGAAGCGGTGCT 59.965 50.000 0.00 0.00 42.56 4.40
548 551 0.874390 TTCAGTTGATGAAGCGGTGC 59.126 50.000 0.00 0.00 43.09 5.01
562 565 9.654663 GGTCAAACAGAGTAGTATATTTTCAGT 57.345 33.333 0.00 0.00 0.00 3.41
563 566 9.099454 GGGTCAAACAGAGTAGTATATTTTCAG 57.901 37.037 0.00 0.00 0.00 3.02
564 567 8.598916 TGGGTCAAACAGAGTAGTATATTTTCA 58.401 33.333 0.00 0.00 0.00 2.69
565 568 9.444600 TTGGGTCAAACAGAGTAGTATATTTTC 57.555 33.333 0.00 0.00 0.00 2.29
566 569 9.802039 TTTGGGTCAAACAGAGTAGTATATTTT 57.198 29.630 0.00 0.00 0.00 1.82
567 570 9.975218 ATTTGGGTCAAACAGAGTAGTATATTT 57.025 29.630 0.00 0.00 36.13 1.40
568 571 9.975218 AATTTGGGTCAAACAGAGTAGTATATT 57.025 29.630 0.00 0.00 36.13 1.28
571 574 9.227777 GTTAATTTGGGTCAAACAGAGTAGTAT 57.772 33.333 0.00 0.00 36.13 2.12
572 575 8.434392 AGTTAATTTGGGTCAAACAGAGTAGTA 58.566 33.333 0.00 0.00 36.13 1.82
573 576 7.228706 CAGTTAATTTGGGTCAAACAGAGTAGT 59.771 37.037 0.00 0.00 36.13 2.73
574 577 7.444183 TCAGTTAATTTGGGTCAAACAGAGTAG 59.556 37.037 0.00 0.00 36.13 2.57
575 578 7.284074 TCAGTTAATTTGGGTCAAACAGAGTA 58.716 34.615 0.00 0.00 36.13 2.59
576 579 6.126409 TCAGTTAATTTGGGTCAAACAGAGT 58.874 36.000 0.00 0.00 36.13 3.24
577 580 6.633500 TCAGTTAATTTGGGTCAAACAGAG 57.367 37.500 0.00 0.00 36.13 3.35
578 581 7.721842 TGTATCAGTTAATTTGGGTCAAACAGA 59.278 33.333 0.00 0.00 36.13 3.41
579 582 7.881142 TGTATCAGTTAATTTGGGTCAAACAG 58.119 34.615 0.00 0.00 36.13 3.16
580 583 7.825331 TGTATCAGTTAATTTGGGTCAAACA 57.175 32.000 0.00 0.00 36.13 2.83
581 584 8.357402 AGTTGTATCAGTTAATTTGGGTCAAAC 58.643 33.333 0.00 0.00 36.13 2.93
582 585 8.356657 CAGTTGTATCAGTTAATTTGGGTCAAA 58.643 33.333 0.00 0.00 37.75 2.69
583 586 7.504238 ACAGTTGTATCAGTTAATTTGGGTCAA 59.496 33.333 0.00 0.00 0.00 3.18
584 587 7.001674 ACAGTTGTATCAGTTAATTTGGGTCA 58.998 34.615 0.00 0.00 0.00 4.02
585 588 7.448748 ACAGTTGTATCAGTTAATTTGGGTC 57.551 36.000 0.00 0.00 0.00 4.46
586 589 8.161425 ACTACAGTTGTATCAGTTAATTTGGGT 58.839 33.333 0.00 0.00 0.00 4.51
587 590 8.561738 ACTACAGTTGTATCAGTTAATTTGGG 57.438 34.615 0.00 0.00 0.00 4.12
595 598 9.075678 AGTTGTACTACTACAGTTGTATCAGTT 57.924 33.333 8.27 0.10 38.21 3.16
596 599 8.632906 AGTTGTACTACTACAGTTGTATCAGT 57.367 34.615 8.27 9.49 38.21 3.41
597 600 9.909644 AAAGTTGTACTACTACAGTTGTATCAG 57.090 33.333 10.43 0.00 38.21 2.90
637 640 8.977505 CGATCCAAATAAATTGACACAACTTTT 58.022 29.630 0.00 0.00 41.85 2.27
638 641 7.598493 CCGATCCAAATAAATTGACACAACTTT 59.402 33.333 0.00 0.00 41.85 2.66
639 642 7.040062 TCCGATCCAAATAAATTGACACAACTT 60.040 33.333 0.00 0.00 41.85 2.66
640 643 6.432783 TCCGATCCAAATAAATTGACACAACT 59.567 34.615 0.00 0.00 41.85 3.16
641 644 6.526674 GTCCGATCCAAATAAATTGACACAAC 59.473 38.462 0.00 0.00 41.85 3.32
642 645 6.207614 TGTCCGATCCAAATAAATTGACACAA 59.792 34.615 0.00 0.00 41.85 3.33
643 646 5.707764 TGTCCGATCCAAATAAATTGACACA 59.292 36.000 0.00 0.00 41.85 3.72
644 647 6.093495 TCTGTCCGATCCAAATAAATTGACAC 59.907 38.462 0.00 0.00 41.85 3.67
645 648 6.176896 TCTGTCCGATCCAAATAAATTGACA 58.823 36.000 0.00 0.00 41.85 3.58
646 649 6.316390 ACTCTGTCCGATCCAAATAAATTGAC 59.684 38.462 0.00 0.00 41.85 3.18
647 650 6.414732 ACTCTGTCCGATCCAAATAAATTGA 58.585 36.000 0.00 0.00 41.85 2.57
648 651 6.683974 ACTCTGTCCGATCCAAATAAATTG 57.316 37.500 0.00 0.00 38.84 2.32
654 657 9.877178 GAATTATATACTCTGTCCGATCCAAAT 57.123 33.333 0.00 0.00 0.00 2.32
655 658 8.866093 TGAATTATATACTCTGTCCGATCCAAA 58.134 33.333 0.00 0.00 0.00 3.28
656 659 8.417273 TGAATTATATACTCTGTCCGATCCAA 57.583 34.615 0.00 0.00 0.00 3.53
657 660 7.363007 GCTGAATTATATACTCTGTCCGATCCA 60.363 40.741 0.00 0.00 0.00 3.41
658 661 6.975772 GCTGAATTATATACTCTGTCCGATCC 59.024 42.308 0.00 0.00 0.00 3.36
659 662 6.689241 CGCTGAATTATATACTCTGTCCGATC 59.311 42.308 0.00 0.00 0.00 3.69
660 663 6.556212 CGCTGAATTATATACTCTGTCCGAT 58.444 40.000 0.00 0.00 0.00 4.18
661 664 5.619309 GCGCTGAATTATATACTCTGTCCGA 60.619 44.000 0.00 0.00 0.00 4.55
662 665 4.559251 GCGCTGAATTATATACTCTGTCCG 59.441 45.833 0.00 0.00 0.00 4.79
663 666 4.865365 GGCGCTGAATTATATACTCTGTCC 59.135 45.833 7.64 0.00 0.00 4.02
664 667 4.559251 CGGCGCTGAATTATATACTCTGTC 59.441 45.833 11.90 0.00 0.00 3.51
665 668 4.486090 CGGCGCTGAATTATATACTCTGT 58.514 43.478 11.90 0.00 0.00 3.41
666 669 3.304559 GCGGCGCTGAATTATATACTCTG 59.695 47.826 26.86 0.00 0.00 3.35
667 670 3.193691 AGCGGCGCTGAATTATATACTCT 59.806 43.478 36.00 2.90 37.57 3.24
668 671 3.512680 AGCGGCGCTGAATTATATACTC 58.487 45.455 36.00 0.00 37.57 2.59
669 672 3.193691 AGAGCGGCGCTGAATTATATACT 59.806 43.478 41.51 22.33 39.88 2.12
670 673 3.512680 AGAGCGGCGCTGAATTATATAC 58.487 45.455 41.51 20.27 39.88 1.47
671 674 3.868757 AGAGCGGCGCTGAATTATATA 57.131 42.857 41.51 0.00 39.88 0.86
672 675 2.751166 AGAGCGGCGCTGAATTATAT 57.249 45.000 41.51 12.52 39.88 0.86
673 676 3.730963 CGATAGAGCGGCGCTGAATTATA 60.731 47.826 41.51 17.31 39.88 0.98
674 677 2.611518 GATAGAGCGGCGCTGAATTAT 58.388 47.619 41.51 27.33 39.88 1.28
675 678 1.666023 CGATAGAGCGGCGCTGAATTA 60.666 52.381 41.51 24.12 39.88 1.40
676 679 0.941463 CGATAGAGCGGCGCTGAATT 60.941 55.000 41.51 22.76 39.88 2.17
677 680 1.372251 CGATAGAGCGGCGCTGAAT 60.372 57.895 41.51 29.96 39.88 2.57
678 681 2.026157 CGATAGAGCGGCGCTGAA 59.974 61.111 41.51 26.54 39.88 3.02
679 682 2.900337 TCGATAGAGCGGCGCTGA 60.900 61.111 41.51 26.45 39.88 4.26
700 703 2.159226 TCGCCGGTGTTGAATTGTTTTT 60.159 40.909 16.01 0.00 0.00 1.94
701 704 1.405821 TCGCCGGTGTTGAATTGTTTT 59.594 42.857 16.01 0.00 0.00 2.43
702 705 1.001815 CTCGCCGGTGTTGAATTGTTT 60.002 47.619 16.01 0.00 0.00 2.83
703 706 0.591170 CTCGCCGGTGTTGAATTGTT 59.409 50.000 16.01 0.00 0.00 2.83
704 707 0.250124 TCTCGCCGGTGTTGAATTGT 60.250 50.000 16.01 0.00 0.00 2.71
705 708 0.443869 CTCTCGCCGGTGTTGAATTG 59.556 55.000 16.01 0.18 0.00 2.32
706 709 1.298859 GCTCTCGCCGGTGTTGAATT 61.299 55.000 16.01 0.00 0.00 2.17
707 710 1.741770 GCTCTCGCCGGTGTTGAAT 60.742 57.895 16.01 0.00 0.00 2.57
708 711 2.357034 GCTCTCGCCGGTGTTGAA 60.357 61.111 16.01 0.00 0.00 2.69
709 712 4.717629 CGCTCTCGCCGGTGTTGA 62.718 66.667 16.01 13.33 0.00 3.18
710 713 3.620300 TACGCTCTCGCCGGTGTTG 62.620 63.158 16.01 9.55 39.84 3.33
711 714 3.338126 CTACGCTCTCGCCGGTGTT 62.338 63.158 16.01 0.00 39.84 3.32
712 715 3.812019 CTACGCTCTCGCCGGTGT 61.812 66.667 16.01 0.00 39.84 4.16
715 718 2.831366 TTAGCTACGCTCTCGCCGG 61.831 63.158 0.00 0.00 40.44 6.13
716 719 1.654743 GTTAGCTACGCTCTCGCCG 60.655 63.158 0.00 0.00 40.44 6.46
717 720 1.654743 CGTTAGCTACGCTCTCGCC 60.655 63.158 0.00 0.00 44.26 5.54
718 721 3.891008 CGTTAGCTACGCTCTCGC 58.109 61.111 0.00 0.00 44.26 5.03
726 729 2.955614 TCTTGGCTGTTCGTTAGCTAC 58.044 47.619 0.00 0.00 40.92 3.58
727 730 3.006537 ACTTCTTGGCTGTTCGTTAGCTA 59.993 43.478 0.00 0.00 40.92 3.32
728 731 2.224305 ACTTCTTGGCTGTTCGTTAGCT 60.224 45.455 0.00 0.00 40.92 3.32
729 732 2.143925 ACTTCTTGGCTGTTCGTTAGC 58.856 47.619 0.00 0.00 40.41 3.09
741 744 2.735762 GCACTAGAGGCGTACTTCTTGG 60.736 54.545 0.00 0.00 0.00 3.61
758 761 1.686052 GCTGATAGCTCCTACTGCACT 59.314 52.381 0.00 0.00 38.45 4.40
760 763 0.670706 CGCTGATAGCTCCTACTGCA 59.329 55.000 0.00 0.00 39.60 4.41
786 789 0.753262 GGAGGAGGATTTGAGCGCTA 59.247 55.000 11.50 0.00 0.00 4.26
792 795 1.684391 TCGCGGGAGGAGGATTTGA 60.684 57.895 6.13 0.00 0.00 2.69
836 839 7.360522 GCGTTAAAAATTGTTTGGGATAAAGGG 60.361 37.037 0.00 0.00 0.00 3.95
837 840 7.360522 GGCGTTAAAAATTGTTTGGGATAAAGG 60.361 37.037 0.00 0.00 0.00 3.11
843 846 4.402056 TGGCGTTAAAAATTGTTTGGGA 57.598 36.364 0.00 0.00 0.00 4.37
845 848 5.843360 CGAAATGGCGTTAAAAATTGTTTGG 59.157 36.000 0.00 0.00 0.00 3.28
847 850 6.591313 ACGAAATGGCGTTAAAAATTGTTT 57.409 29.167 0.00 0.00 42.71 2.83
862 865 6.415867 CGTACAGTATACTACCAACGAAATGG 59.584 42.308 17.00 0.00 46.38 3.16
868 871 5.725110 ACTCGTACAGTATACTACCAACG 57.275 43.478 4.74 12.38 31.37 4.10
939 942 3.255149 ACGCCACAGTATATAGTACCTGC 59.745 47.826 0.00 0.00 0.00 4.85
1047 1051 3.966026 CTCCGACGTCGACAAGGGC 62.966 68.421 37.65 0.00 43.02 5.19
1051 1055 2.559840 GAGCTCCGACGTCGACAA 59.440 61.111 37.65 21.12 43.02 3.18
1052 1056 3.429141 GGAGCTCCGACGTCGACA 61.429 66.667 37.65 22.39 43.02 4.35
1068 1075 2.285144 AGGTTACCCCAGTCCCGG 60.285 66.667 0.00 0.00 34.66 5.73
1107 1114 1.343465 GGAAAGAGACGGTCAAGGACA 59.657 52.381 11.27 0.00 33.68 4.02
1113 1120 0.036388 GGCATGGAAAGAGACGGTCA 60.036 55.000 11.27 0.00 0.00 4.02
1119 1126 1.221840 GCGGAGGCATGGAAAGAGA 59.778 57.895 0.00 0.00 39.62 3.10
1303 1310 3.335356 ATGAGAAGGCGGGCAGTGG 62.335 63.158 3.78 0.00 0.00 4.00
1336 1343 1.812571 GCGATTCCACAATCCAACTGT 59.187 47.619 0.00 0.00 35.81 3.55
1337 1344 2.086869 AGCGATTCCACAATCCAACTG 58.913 47.619 0.00 0.00 35.81 3.16
1414 1422 5.892160 AGTCTGTTGTAACTATCGTAGCA 57.108 39.130 0.00 0.00 0.00 3.49
1437 1445 1.893137 TGATCGCCGCTTATCCTGTAT 59.107 47.619 0.00 0.00 0.00 2.29
1678 1724 3.394674 TCGTGTTCTTCATGTGCCTAA 57.605 42.857 0.00 0.00 34.87 2.69
1680 1726 2.254546 TTCGTGTTCTTCATGTGCCT 57.745 45.000 0.00 0.00 34.87 4.75
1766 1812 1.271871 TGTCAAGCAATCCGGTCCAAT 60.272 47.619 0.00 0.00 0.00 3.16
1844 1890 1.736586 CAACTCCTCGCCGAGCTAT 59.263 57.895 9.01 0.00 32.79 2.97
2591 2637 1.228429 TTGGGGTTTCAGGCTTCCG 60.228 57.895 0.00 0.00 0.00 4.30
2848 2894 4.379243 CAGCCCCGTCGTCAAGCT 62.379 66.667 0.00 0.00 0.00 3.74
2886 2933 1.893808 CTTCACACAGCAAGCCGGT 60.894 57.895 1.90 0.00 0.00 5.28
2966 3013 3.259123 GGTGAGTGGCAAATGGATCTTTT 59.741 43.478 0.00 0.00 0.00 2.27
3103 3150 0.253347 TCAGCCCCATTCCCTCTTCT 60.253 55.000 0.00 0.00 0.00 2.85
3327 3380 3.066190 CCACTACCTCGCCCGACA 61.066 66.667 0.00 0.00 0.00 4.35
3583 3831 2.585900 ACACCAGATCCTACCTACCTCA 59.414 50.000 0.00 0.00 0.00 3.86
3648 3905 1.470632 CCTCACTTGCCGCAACAAAAA 60.471 47.619 0.38 0.00 0.00 1.94
3653 3910 2.348605 TTTGCCTCACTTGCCGCAAC 62.349 55.000 0.38 0.00 40.71 4.17
3666 3923 1.903404 CGCACCTTCCCTTTTGCCT 60.903 57.895 0.00 0.00 0.00 4.75
3697 3954 2.271800 GTTCACATCTCCCGTCATGTC 58.728 52.381 0.00 0.00 30.48 3.06
3793 4054 0.461339 CACATAAGTTAGCGCCCCGT 60.461 55.000 2.29 0.00 0.00 5.28
3994 4256 0.985549 GCACTCTTCTAGTTCACGCG 59.014 55.000 3.53 3.53 35.76 6.01
4105 4368 2.490217 CGGGATCACTTCTCGCGT 59.510 61.111 5.77 0.00 42.38 6.01
4160 4423 4.273005 ACGCCTCTATTAAATGTTTGCG 57.727 40.909 0.00 0.00 44.48 4.85
4262 4525 6.017192 TCTTAGATGACTTCACCCACTACTT 58.983 40.000 0.00 0.00 0.00 2.24
4444 4707 8.903570 TTAGTTCATGTAATAAAAATGTGCCG 57.096 30.769 0.00 0.00 0.00 5.69
4553 4816 2.657237 CGGTCCTCTGGCGTTCTT 59.343 61.111 0.00 0.00 0.00 2.52
4694 4960 6.870971 AATTTCTGTCCGTTGCTTTACTAA 57.129 33.333 0.00 0.00 0.00 2.24
4704 4970 3.058501 CCGCAACTTAATTTCTGTCCGTT 60.059 43.478 0.00 0.00 0.00 4.44
5255 5527 2.283529 GGAGTCCCTTCGCTGACCA 61.284 63.158 0.00 0.00 31.76 4.02
5294 5566 2.701780 CGTCCTCCCCGTCTGACAG 61.702 68.421 8.73 0.00 0.00 3.51
5562 5837 4.074526 GCCGTCTCCAGCAGCTCA 62.075 66.667 0.00 0.00 0.00 4.26
5666 5941 0.979665 CAGCTGGAGGTCTTCTTCCA 59.020 55.000 5.57 0.00 45.52 3.53
5697 5972 4.824166 CCGAGTCCACGGCGTACG 62.824 72.222 14.22 11.84 46.20 3.67
5896 6171 2.892640 CTCAGCATCGACGGGGAA 59.107 61.111 0.00 0.00 0.00 3.97
6530 6897 2.500098 CTCCGTGATACCCCTTTTGAGA 59.500 50.000 0.00 0.00 0.00 3.27
6561 6929 2.561885 CGTCGACGACAAGGAGCT 59.438 61.111 33.35 0.00 43.02 4.09
6687 7055 1.551145 GAAGCGGAGTGAGTCGAATC 58.449 55.000 5.80 5.80 0.00 2.52
6757 7125 0.737715 CGGTTGAGAGAAAGGAGGCG 60.738 60.000 0.00 0.00 0.00 5.52
6766 7134 3.428999 GGAATTCGATCACGGTTGAGAGA 60.429 47.826 0.00 0.00 40.21 3.10
6842 7210 2.778679 GCGTGGAGCGTTGACATC 59.221 61.111 0.00 0.00 43.66 3.06
6879 7250 2.906897 CGGTTGTGGGCAGCAACT 60.907 61.111 18.23 0.00 43.93 3.16
6979 7350 1.688735 TCCGTCATAATCAGCAGGAGG 59.311 52.381 0.00 0.00 0.00 4.30
7037 7408 1.805869 CTCACCTTCTGCACTCTTGG 58.194 55.000 0.00 0.00 0.00 3.61
7039 7410 0.320247 CGCTCACCTTCTGCACTCTT 60.320 55.000 0.00 0.00 0.00 2.85
7086 7457 2.583441 TTGTCCAGCTCCTCCCACG 61.583 63.158 0.00 0.00 0.00 4.94
7100 7471 1.739371 GCTGTACTCCCCGATGTTGTC 60.739 57.143 0.00 0.00 0.00 3.18
7102 7473 0.537188 AGCTGTACTCCCCGATGTTG 59.463 55.000 0.00 0.00 0.00 3.33
7103 7474 1.066143 CAAGCTGTACTCCCCGATGTT 60.066 52.381 0.00 0.00 0.00 2.71
7204 7575 1.922570 AATACATGGACGACACGAGC 58.077 50.000 0.00 0.00 0.00 5.03
7212 7583 4.426416 TCCAAAGTCGTAATACATGGACG 58.574 43.478 0.00 1.44 34.55 4.79
7213 7584 6.035758 GTCTTCCAAAGTCGTAATACATGGAC 59.964 42.308 0.00 0.00 37.36 4.02
7216 7587 5.005394 CCGTCTTCCAAAGTCGTAATACATG 59.995 44.000 0.00 0.00 38.16 3.21
7218 7589 4.487948 CCGTCTTCCAAAGTCGTAATACA 58.512 43.478 5.81 0.00 38.16 2.29
7297 7668 1.445095 GGAGATGAGCGCAGACCAT 59.555 57.895 11.47 7.27 0.00 3.55
7378 7749 8.715088 TCATCTGATTTGATAAATAGTGATGCG 58.285 33.333 13.05 0.00 34.97 4.73
7409 7780 2.223294 CGGTTCTTGTGGCAACGTTTAA 60.223 45.455 0.00 0.00 42.51 1.52
7410 7781 1.331138 CGGTTCTTGTGGCAACGTTTA 59.669 47.619 0.00 0.00 42.51 2.01
7419 7790 2.422597 TGCAATAGTCGGTTCTTGTGG 58.577 47.619 0.00 0.00 0.00 4.17
7420 7791 4.685169 ATTGCAATAGTCGGTTCTTGTG 57.315 40.909 11.02 0.00 0.00 3.33
7423 7794 8.612619 CAAAGTATATTGCAATAGTCGGTTCTT 58.387 33.333 22.76 12.47 0.00 2.52
7425 7796 8.138365 TCAAAGTATATTGCAATAGTCGGTTC 57.862 34.615 22.76 5.58 0.00 3.62
7592 7966 4.322198 GGTCCATTCAACATGCATGAAACT 60.322 41.667 32.75 7.78 39.98 2.66
7628 8003 5.708697 ACACATTTCATCTCATCACACATGT 59.291 36.000 0.00 0.00 0.00 3.21
7635 8010 7.558604 TCTCATGTACACATTTCATCTCATCA 58.441 34.615 0.00 0.00 33.61 3.07
7636 8011 8.604640 ATCTCATGTACACATTTCATCTCATC 57.395 34.615 0.00 0.00 33.61 2.92
7644 8019 8.948631 TTTAGGAGATCTCATGTACACATTTC 57.051 34.615 23.85 2.13 33.61 2.17
7645 8020 9.167311 GTTTTAGGAGATCTCATGTACACATTT 57.833 33.333 23.85 0.00 33.61 2.32
7646 8021 8.543774 AGTTTTAGGAGATCTCATGTACACATT 58.456 33.333 23.85 0.00 33.61 2.71
7653 8028 8.787852 GTGAAAAAGTTTTAGGAGATCTCATGT 58.212 33.333 23.85 10.43 0.00 3.21
7688 8063 3.055328 TCTCATCAAAGGCCCCATCATA 58.945 45.455 0.00 0.00 0.00 2.15
7692 8067 1.133262 CCATCTCATCAAAGGCCCCAT 60.133 52.381 0.00 0.00 0.00 4.00
7704 8079 6.591448 CGTAACATGTGTATATGCCATCTCAT 59.409 38.462 0.00 0.00 0.00 2.90
7773 8148 5.357032 GGTTCACAACGAAATAATGGATCCT 59.643 40.000 14.23 0.00 34.69 3.24
7778 8153 4.380444 CCCTGGTTCACAACGAAATAATGG 60.380 45.833 0.00 0.00 34.69 3.16
7813 8188 2.948979 TGATAATTCATGCCCGAACCAC 59.051 45.455 0.00 0.00 0.00 4.16
7839 8214 8.680903 AGAAGTTTGGATTGCTTATATGACAAG 58.319 33.333 0.00 0.00 0.00 3.16
7880 8255 5.220548 GCATCTAGTACTGAACACTTGCATG 60.221 44.000 5.39 0.00 0.00 4.06
7912 8292 2.617308 TGTCGAGAGTGAAAAGAGACGT 59.383 45.455 0.00 0.00 0.00 4.34
7917 8297 4.126437 TGCAATTGTCGAGAGTGAAAAGA 58.874 39.130 7.40 0.00 0.00 2.52
7918 8298 4.024556 ACTGCAATTGTCGAGAGTGAAAAG 60.025 41.667 7.40 0.00 0.00 2.27
7920 8300 3.248363 CACTGCAATTGTCGAGAGTGAAA 59.752 43.478 7.40 0.00 34.06 2.69
7950 8331 4.021981 TCACTTGAACTGACACTCGATCAT 60.022 41.667 0.00 0.00 0.00 2.45
7953 8334 4.527509 ATCACTTGAACTGACACTCGAT 57.472 40.909 0.00 0.00 0.00 3.59
7971 8355 5.240623 ACGTAGTCTTTGGATTTGCAAATCA 59.759 36.000 39.11 27.36 41.57 2.57
7997 8381 3.712881 GACTGTGACCGCGCAACC 61.713 66.667 8.75 0.00 33.47 3.77
8012 8396 0.933097 ACGCGCTGATTGATCATGAC 59.067 50.000 5.73 0.00 36.02 3.06
8021 8405 5.501715 CAATACTTGATTAACGCGCTGATT 58.498 37.500 5.73 0.00 0.00 2.57
8036 8420 0.391927 TTCGGCCGGACCAATACTTG 60.392 55.000 27.83 0.00 39.03 3.16
8042 8426 2.267642 CAGATTCGGCCGGACCAA 59.732 61.111 27.83 12.99 39.03 3.67
8137 8529 1.379309 GAGGGACGAGCTCCACTCT 60.379 63.158 13.32 10.27 43.85 3.24
8138 8530 2.766400 CGAGGGACGAGCTCCACTC 61.766 68.421 8.47 10.08 45.77 3.51
8139 8531 2.752238 CGAGGGACGAGCTCCACT 60.752 66.667 8.47 0.38 45.77 4.00
8202 8594 5.778241 AGGGGTTTACAATTGTAAGGGAAAG 59.222 40.000 25.62 0.00 41.03 2.62
8230 8622 1.357907 TACGGCCAAAATTCGTACGG 58.642 50.000 16.52 0.00 38.19 4.02
8277 8670 6.206243 GGTCCTGATTCCTGATATGTTGATTG 59.794 42.308 0.00 0.00 0.00 2.67
8278 8671 6.126390 TGGTCCTGATTCCTGATATGTTGATT 60.126 38.462 0.00 0.00 0.00 2.57
8281 8674 5.039920 TGGTCCTGATTCCTGATATGTTG 57.960 43.478 0.00 0.00 0.00 3.33
8282 8675 5.222007 GGATGGTCCTGATTCCTGATATGTT 60.222 44.000 0.00 0.00 32.53 2.71
8285 8678 3.517100 CGGATGGTCCTGATTCCTGATAT 59.483 47.826 0.00 0.00 33.30 1.63
8286 8679 2.899900 CGGATGGTCCTGATTCCTGATA 59.100 50.000 0.00 0.00 33.30 2.15
8287 8680 1.696336 CGGATGGTCCTGATTCCTGAT 59.304 52.381 0.00 0.00 33.30 2.90
8288 8681 1.123077 CGGATGGTCCTGATTCCTGA 58.877 55.000 0.00 0.00 33.30 3.86
8289 8682 1.123077 TCGGATGGTCCTGATTCCTG 58.877 55.000 0.00 0.00 33.30 3.86
8290 8683 1.974236 GATCGGATGGTCCTGATTCCT 59.026 52.381 0.00 0.00 32.67 3.36
8292 8685 3.475566 TTGATCGGATGGTCCTGATTC 57.524 47.619 0.00 0.00 32.67 2.52
8294 8687 3.392285 TGATTTGATCGGATGGTCCTGAT 59.608 43.478 0.00 0.00 34.28 2.90
8295 8688 2.771372 TGATTTGATCGGATGGTCCTGA 59.229 45.455 0.00 0.00 33.30 3.86
8296 8689 3.198409 TGATTTGATCGGATGGTCCTG 57.802 47.619 0.00 0.00 33.30 3.86
8297 8690 3.931907 TTGATTTGATCGGATGGTCCT 57.068 42.857 0.00 0.00 33.30 3.85
8299 8692 7.206981 ACATATTTGATTTGATCGGATGGTC 57.793 36.000 0.00 0.00 0.00 4.02
8301 8694 9.778993 GAATACATATTTGATTTGATCGGATGG 57.221 33.333 0.00 0.00 0.00 3.51
8304 8697 7.387673 AGCGAATACATATTTGATTTGATCGGA 59.612 33.333 3.44 0.00 30.22 4.55
8305 8698 7.479603 CAGCGAATACATATTTGATTTGATCGG 59.520 37.037 3.44 0.00 30.22 4.18
8306 8699 8.011673 ACAGCGAATACATATTTGATTTGATCG 58.988 33.333 3.44 0.00 30.22 3.69
8363 8756 0.107456 AGCAGGTGAATATGCCGGAG 59.893 55.000 5.05 0.00 43.60 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.