Multiple sequence alignment - TraesCS4B01G294900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G294900 chr4B 100.000 3212 0 0 1 3212 580615402 580612191 0.000000e+00 5932.0
1 TraesCS4B01G294900 chr4B 97.017 905 21 3 942 1844 580770153 580771053 0.000000e+00 1517.0
2 TraesCS4B01G294900 chr4B 88.119 808 78 9 2421 3212 42665338 42664533 0.000000e+00 944.0
3 TraesCS4B01G294900 chr4B 93.211 545 35 1 1843 2385 580771137 580771681 0.000000e+00 800.0
4 TraesCS4B01G294900 chr4B 99.029 309 3 0 1 309 579401266 579401574 3.620000e-154 555.0
5 TraesCS4B01G294900 chr4B 99.029 309 3 0 1 309 653733795 653733487 3.620000e-154 555.0
6 TraesCS4B01G294900 chr4D 90.456 1163 65 22 681 1837 464362519 464363641 0.000000e+00 1491.0
7 TraesCS4B01G294900 chr4D 94.186 946 40 7 901 1844 464301063 464300131 0.000000e+00 1428.0
8 TraesCS4B01G294900 chr4D 90.829 567 28 10 1843 2385 464363738 464364304 0.000000e+00 737.0
9 TraesCS4B01G294900 chr4D 96.032 378 15 0 1843 2220 464300047 464299670 1.640000e-172 616.0
10 TraesCS4B01G294900 chr4D 94.262 244 7 4 636 872 464301302 464301059 1.820000e-97 366.0
11 TraesCS4B01G294900 chr4A 95.028 905 39 3 942 1844 5743654 5742754 0.000000e+00 1417.0
12 TraesCS4B01G294900 chr4A 91.398 558 34 7 1843 2395 5742670 5742122 0.000000e+00 752.0
13 TraesCS4B01G294900 chr4A 99.029 309 3 0 1 309 249545419 249545111 3.620000e-154 555.0
14 TraesCS4B01G294900 chr4A 79.597 843 117 32 2407 3212 574200873 574200049 1.300000e-153 553.0
15 TraesCS4B01G294900 chr4A 92.163 319 17 7 349 665 5772859 5773171 8.180000e-121 444.0
16 TraesCS4B01G294900 chr4A 86.784 227 16 7 2117 2341 5780942 5781156 1.150000e-59 241.0
17 TraesCS4B01G294900 chr4A 97.297 37 1 0 2278 2314 5742179 5742143 2.680000e-06 63.9
18 TraesCS4B01G294900 chr4A 100.000 28 0 0 865 892 5743757 5743730 6.000000e-03 52.8
19 TraesCS4B01G294900 chr1B 91.919 792 63 1 2421 3212 16399954 16399164 0.000000e+00 1107.0
20 TraesCS4B01G294900 chr1B 92.341 692 43 6 2530 3212 615756165 615755475 0.000000e+00 976.0
21 TraesCS4B01G294900 chr1B 88.214 823 55 12 2419 3212 637626639 637625830 0.000000e+00 944.0
22 TraesCS4B01G294900 chr2B 91.429 805 54 7 2422 3212 47645250 47646053 0.000000e+00 1090.0
23 TraesCS4B01G294900 chr2B 99.029 309 3 0 1 309 783865968 783866276 3.620000e-154 555.0
24 TraesCS4B01G294900 chr5B 90.335 807 63 6 2418 3212 653306599 653305796 0.000000e+00 1044.0
25 TraesCS4B01G294900 chr5B 92.977 598 38 3 2617 3212 415845022 415844427 0.000000e+00 869.0
26 TraesCS4B01G294900 chr5B 99.029 309 3 0 1 309 688022296 688021988 3.620000e-154 555.0
27 TraesCS4B01G294900 chr5B 84.394 487 55 11 2413 2892 94142120 94141648 2.920000e-125 459.0
28 TraesCS4B01G294900 chr6B 90.211 807 67 5 2418 3212 1975154 1975960 0.000000e+00 1042.0
29 TraesCS4B01G294900 chr6B 98.403 313 5 0 1 313 76856324 76856012 4.680000e-153 551.0
30 TraesCS4B01G294900 chr6B 86.337 344 42 5 1143 1483 714580550 714580209 1.410000e-98 370.0
31 TraesCS4B01G294900 chr6B 80.984 305 41 14 1124 1426 714582758 714582469 3.220000e-55 226.0
32 TraesCS4B01G294900 chr3B 88.753 818 64 11 2423 3212 51047233 51046416 0.000000e+00 976.0
33 TraesCS4B01G294900 chr3B 86.724 821 80 17 2421 3212 42769941 42769121 0.000000e+00 885.0
34 TraesCS4B01G294900 chr7A 98.718 312 4 0 1 312 726896419 726896108 3.620000e-154 555.0
35 TraesCS4B01G294900 chr2A 98.408 314 5 0 1 314 193725585 193725898 1.300000e-153 553.0
36 TraesCS4B01G294900 chr6A 97.196 321 9 0 1 321 592708180 592708500 7.840000e-151 544.0
37 TraesCS4B01G294900 chr6A 77.570 321 58 5 1505 1811 2155487 2155167 7.080000e-42 182.0
38 TraesCS4B01G294900 chr3D 88.290 427 34 5 2421 2842 13156301 13155886 6.190000e-137 497.0
39 TraesCS4B01G294900 chr3D 82.282 412 46 12 2409 2811 581986308 581986701 6.640000e-87 331.0
40 TraesCS4B01G294900 chr1D 85.081 496 46 15 2410 2892 452268019 452267539 6.230000e-132 481.0
41 TraesCS4B01G294900 chr5D 81.964 499 59 19 2409 2892 486532843 486533325 8.350000e-106 394.0
42 TraesCS4B01G294900 chr6D 90.141 284 26 2 1143 1425 468811724 468811442 5.060000e-98 368.0
43 TraesCS4B01G294900 chr6D 85.928 334 47 0 1505 1838 3348261 3347928 1.100000e-94 357.0
44 TraesCS4B01G294900 chr6D 94.000 50 2 1 1236 1285 3348383 3348335 1.240000e-09 75.0
45 TraesCS4B01G294900 chrUn 85.434 357 45 7 1131 1483 75203636 75203989 6.550000e-97 364.0
46 TraesCS4B01G294900 chr7D 85.145 276 27 7 2410 2674 25012342 25012070 1.470000e-68 270.0
47 TraesCS4B01G294900 chr3A 79.469 414 57 16 2406 2809 639698528 639698133 5.280000e-68 268.0
48 TraesCS4B01G294900 chr3A 81.863 204 26 5 2414 2608 408862553 408862352 9.220000e-36 161.0
49 TraesCS4B01G294900 chr5A 79.118 340 53 13 2409 2734 502888394 502888059 5.390000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G294900 chr4B 580612191 580615402 3211 True 5932.000000 5932 100.000000 1 3212 1 chr4B.!!$R2 3211
1 TraesCS4B01G294900 chr4B 580770153 580771681 1528 False 1158.500000 1517 95.114000 942 2385 2 chr4B.!!$F2 1443
2 TraesCS4B01G294900 chr4B 42664533 42665338 805 True 944.000000 944 88.119000 2421 3212 1 chr4B.!!$R1 791
3 TraesCS4B01G294900 chr4D 464362519 464364304 1785 False 1114.000000 1491 90.642500 681 2385 2 chr4D.!!$F1 1704
4 TraesCS4B01G294900 chr4D 464299670 464301302 1632 True 803.333333 1428 94.826667 636 2220 3 chr4D.!!$R1 1584
5 TraesCS4B01G294900 chr4A 5742122 5743757 1635 True 571.425000 1417 95.930750 865 2395 4 chr4A.!!$R3 1530
6 TraesCS4B01G294900 chr4A 574200049 574200873 824 True 553.000000 553 79.597000 2407 3212 1 chr4A.!!$R2 805
7 TraesCS4B01G294900 chr1B 16399164 16399954 790 True 1107.000000 1107 91.919000 2421 3212 1 chr1B.!!$R1 791
8 TraesCS4B01G294900 chr1B 615755475 615756165 690 True 976.000000 976 92.341000 2530 3212 1 chr1B.!!$R2 682
9 TraesCS4B01G294900 chr1B 637625830 637626639 809 True 944.000000 944 88.214000 2419 3212 1 chr1B.!!$R3 793
10 TraesCS4B01G294900 chr2B 47645250 47646053 803 False 1090.000000 1090 91.429000 2422 3212 1 chr2B.!!$F1 790
11 TraesCS4B01G294900 chr5B 653305796 653306599 803 True 1044.000000 1044 90.335000 2418 3212 1 chr5B.!!$R3 794
12 TraesCS4B01G294900 chr5B 415844427 415845022 595 True 869.000000 869 92.977000 2617 3212 1 chr5B.!!$R2 595
13 TraesCS4B01G294900 chr6B 1975154 1975960 806 False 1042.000000 1042 90.211000 2418 3212 1 chr6B.!!$F1 794
14 TraesCS4B01G294900 chr6B 714580209 714582758 2549 True 298.000000 370 83.660500 1124 1483 2 chr6B.!!$R2 359
15 TraesCS4B01G294900 chr3B 51046416 51047233 817 True 976.000000 976 88.753000 2423 3212 1 chr3B.!!$R2 789
16 TraesCS4B01G294900 chr3B 42769121 42769941 820 True 885.000000 885 86.724000 2421 3212 1 chr3B.!!$R1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 633 0.031616 TTGAAAACAAGGGGGCAGGT 60.032 50.0 0.0 0.0 0.0 4.00 F
746 750 0.032130 TCACAGGACGACAACAGCTC 59.968 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 3362 0.038159 GAGACGGCAGCTAGTTGTGT 60.038 55.0 8.48 7.31 0.0 3.72 R
2416 3602 0.179089 CGGTTGGAGATGCTCTGAGG 60.179 60.0 6.83 0.00 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.261981 GAAGGTGTCGTATGAATGGGT 57.738 47.619 0.00 0.00 0.00 4.51
21 22 3.606687 GAAGGTGTCGTATGAATGGGTT 58.393 45.455 0.00 0.00 0.00 4.11
22 23 2.985896 AGGTGTCGTATGAATGGGTTG 58.014 47.619 0.00 0.00 0.00 3.77
23 24 2.014128 GGTGTCGTATGAATGGGTTGG 58.986 52.381 0.00 0.00 0.00 3.77
25 26 1.909986 TGTCGTATGAATGGGTTGGGA 59.090 47.619 0.00 0.00 0.00 4.37
27 28 1.210967 TCGTATGAATGGGTTGGGACC 59.789 52.381 0.00 0.00 45.75 4.46
38 39 3.462483 GGTTGGGACCGTTCAATTTTT 57.538 42.857 0.00 0.00 35.91 1.94
69 70 7.479897 TTGAACCATTCAATTCATGTGTTTG 57.520 32.000 0.00 0.00 44.21 2.93
70 71 6.814043 TGAACCATTCAATTCATGTGTTTGA 58.186 32.000 0.00 0.00 36.59 2.69
71 72 6.700960 TGAACCATTCAATTCATGTGTTTGAC 59.299 34.615 7.06 0.00 36.59 3.18
72 73 6.409524 ACCATTCAATTCATGTGTTTGACT 57.590 33.333 7.06 1.58 0.00 3.41
73 74 6.218019 ACCATTCAATTCATGTGTTTGACTG 58.782 36.000 13.27 13.27 32.77 3.51
74 75 6.040729 ACCATTCAATTCATGTGTTTGACTGA 59.959 34.615 17.90 4.76 34.04 3.41
75 76 6.924612 CCATTCAATTCATGTGTTTGACTGAA 59.075 34.615 17.90 8.42 34.04 3.02
76 77 7.601130 CCATTCAATTCATGTGTTTGACTGAAT 59.399 33.333 17.90 9.70 38.12 2.57
77 78 9.628746 CATTCAATTCATGTGTTTGACTGAATA 57.371 29.630 14.23 1.31 36.85 1.75
84 85 8.267620 TCATGTGTTTGACTGAATATAAGTGG 57.732 34.615 0.00 0.00 0.00 4.00
85 86 7.882791 TCATGTGTTTGACTGAATATAAGTGGT 59.117 33.333 0.00 0.00 0.00 4.16
88 89 7.387673 TGTGTTTGACTGAATATAAGTGGTGAG 59.612 37.037 0.00 0.00 0.00 3.51
90 91 5.939764 TGACTGAATATAAGTGGTGAGCT 57.060 39.130 0.00 0.00 0.00 4.09
91 92 7.418337 TTGACTGAATATAAGTGGTGAGCTA 57.582 36.000 0.00 0.00 0.00 3.32
92 93 7.418337 TGACTGAATATAAGTGGTGAGCTAA 57.582 36.000 0.00 0.00 0.00 3.09
93 94 8.023021 TGACTGAATATAAGTGGTGAGCTAAT 57.977 34.615 0.00 0.00 0.00 1.73
94 95 8.486210 TGACTGAATATAAGTGGTGAGCTAATT 58.514 33.333 0.00 0.00 0.00 1.40
95 96 9.982651 GACTGAATATAAGTGGTGAGCTAATTA 57.017 33.333 0.00 0.00 0.00 1.40
103 104 9.780186 ATAAGTGGTGAGCTAATTATTTAGGAC 57.220 33.333 6.54 0.00 36.18 3.85
104 105 6.281405 AGTGGTGAGCTAATTATTTAGGACG 58.719 40.000 6.54 0.00 36.18 4.79
106 107 4.995487 GGTGAGCTAATTATTTAGGACGGG 59.005 45.833 6.54 0.00 36.18 5.28
107 108 5.221581 GGTGAGCTAATTATTTAGGACGGGA 60.222 44.000 6.54 0.00 36.18 5.14
110 111 4.657039 AGCTAATTATTTAGGACGGGACCA 59.343 41.667 6.54 0.00 36.18 4.02
111 112 4.753610 GCTAATTATTTAGGACGGGACCAC 59.246 45.833 6.54 0.00 36.18 4.16
112 113 3.851458 ATTATTTAGGACGGGACCACC 57.149 47.619 0.00 0.00 0.00 4.61
113 114 2.250921 TATTTAGGACGGGACCACCA 57.749 50.000 0.00 0.00 40.22 4.17
115 116 0.472352 TTTAGGACGGGACCACCAGT 60.472 55.000 0.00 0.00 46.44 4.00
124 125 2.846371 GACCACCAGTCATGCTCAC 58.154 57.895 0.00 0.00 45.55 3.51
125 126 0.035317 GACCACCAGTCATGCTCACA 59.965 55.000 0.00 0.00 45.55 3.58
127 128 1.908619 ACCACCAGTCATGCTCACATA 59.091 47.619 0.00 0.00 33.67 2.29
128 129 2.093288 ACCACCAGTCATGCTCACATAG 60.093 50.000 0.00 0.00 33.67 2.23
129 130 2.093288 CCACCAGTCATGCTCACATAGT 60.093 50.000 0.00 0.00 33.67 2.12
130 131 3.193263 CACCAGTCATGCTCACATAGTC 58.807 50.000 0.00 0.00 33.67 2.59
131 132 2.833943 ACCAGTCATGCTCACATAGTCA 59.166 45.455 0.00 0.00 33.67 3.41
132 133 3.453717 ACCAGTCATGCTCACATAGTCAT 59.546 43.478 0.00 0.00 33.67 3.06
133 134 3.808174 CCAGTCATGCTCACATAGTCATG 59.192 47.826 0.00 0.00 39.28 3.07
135 136 3.118519 AGTCATGCTCACATAGTCATGCA 60.119 43.478 0.00 0.00 38.52 3.96
136 137 3.813724 GTCATGCTCACATAGTCATGCAT 59.186 43.478 0.00 0.00 41.08 3.96
140 141 2.356695 GCTCACATAGTCATGCATGCAA 59.643 45.455 26.68 8.17 35.39 4.08
141 142 3.181494 GCTCACATAGTCATGCATGCAAA 60.181 43.478 26.68 13.49 35.39 3.68
142 143 4.598062 CTCACATAGTCATGCATGCAAAG 58.402 43.478 26.68 20.04 35.39 2.77
143 144 3.379057 TCACATAGTCATGCATGCAAAGG 59.621 43.478 26.68 17.10 35.39 3.11
146 147 0.892755 AGTCATGCATGCAAAGGGTG 59.107 50.000 26.68 17.99 0.00 4.61
147 148 0.108520 GTCATGCATGCAAAGGGTGG 60.109 55.000 26.68 8.41 0.00 4.61
148 149 1.448893 CATGCATGCAAAGGGTGGC 60.449 57.895 26.68 0.00 0.00 5.01
150 151 3.312718 GCATGCAAAGGGTGGCCA 61.313 61.111 14.21 0.00 0.00 5.36
151 152 2.662070 GCATGCAAAGGGTGGCCAT 61.662 57.895 9.72 0.00 0.00 4.40
152 153 1.984817 CATGCAAAGGGTGGCCATT 59.015 52.632 9.72 0.00 0.00 3.16
153 154 0.325602 CATGCAAAGGGTGGCCATTT 59.674 50.000 9.72 2.01 38.06 2.32
159 160 1.185315 AAGGGTGGCCATTTGATTCG 58.815 50.000 9.72 0.00 0.00 3.34
162 163 0.455815 GGTGGCCATTTGATTCGACC 59.544 55.000 9.72 0.00 0.00 4.79
163 164 0.098728 GTGGCCATTTGATTCGACCG 59.901 55.000 9.72 0.00 0.00 4.79
164 165 0.035915 TGGCCATTTGATTCGACCGA 60.036 50.000 0.00 0.00 0.00 4.69
165 166 1.308998 GGCCATTTGATTCGACCGAT 58.691 50.000 0.00 0.00 0.00 4.18
166 167 1.676006 GGCCATTTGATTCGACCGATT 59.324 47.619 0.00 0.00 0.00 3.34
167 168 2.099098 GGCCATTTGATTCGACCGATTT 59.901 45.455 0.00 0.00 0.00 2.17
168 169 3.108144 GCCATTTGATTCGACCGATTTG 58.892 45.455 0.00 0.00 0.00 2.32
169 170 3.694734 CCATTTGATTCGACCGATTTGG 58.305 45.455 0.00 0.00 46.41 3.28
178 179 4.832741 CCGATTTGGTTGGGTGGA 57.167 55.556 0.00 0.00 0.00 4.02
179 180 3.043998 CCGATTTGGTTGGGTGGAA 57.956 52.632 0.00 0.00 0.00 3.53
180 181 0.601057 CCGATTTGGTTGGGTGGAAC 59.399 55.000 0.00 0.00 0.00 3.62
181 182 0.239879 CGATTTGGTTGGGTGGAACG 59.760 55.000 0.00 0.00 38.12 3.95
182 183 0.601057 GATTTGGTTGGGTGGAACGG 59.399 55.000 0.00 0.00 38.12 4.44
183 184 0.105913 ATTTGGTTGGGTGGAACGGT 60.106 50.000 0.00 0.00 38.12 4.83
184 185 0.324460 TTTGGTTGGGTGGAACGGTT 60.324 50.000 0.00 0.00 38.12 4.44
185 186 0.752376 TTGGTTGGGTGGAACGGTTC 60.752 55.000 12.41 12.41 38.12 3.62
186 187 1.152922 GGTTGGGTGGAACGGTTCA 60.153 57.895 21.36 6.13 38.12 3.18
187 188 1.170290 GGTTGGGTGGAACGGTTCAG 61.170 60.000 21.36 0.00 38.12 3.02
189 190 2.112297 GGGTGGAACGGTTCAGCA 59.888 61.111 21.36 9.16 38.12 4.41
192 193 0.321653 GGTGGAACGGTTCAGCATCT 60.322 55.000 21.36 0.00 38.12 2.90
193 194 1.523758 GTGGAACGGTTCAGCATCTT 58.476 50.000 21.36 0.00 0.00 2.40
195 196 1.071542 TGGAACGGTTCAGCATCTTCA 59.928 47.619 21.36 5.77 0.00 3.02
196 197 2.290260 TGGAACGGTTCAGCATCTTCAT 60.290 45.455 21.36 0.00 0.00 2.57
197 198 2.096496 GGAACGGTTCAGCATCTTCATG 59.904 50.000 21.36 0.00 0.00 3.07
198 199 2.768253 ACGGTTCAGCATCTTCATGA 57.232 45.000 0.00 0.00 30.57 3.07
199 200 2.350522 ACGGTTCAGCATCTTCATGAC 58.649 47.619 0.00 0.00 30.57 3.06
200 201 2.289631 ACGGTTCAGCATCTTCATGACA 60.290 45.455 0.00 0.00 30.57 3.58
201 202 2.941064 CGGTTCAGCATCTTCATGACAT 59.059 45.455 0.00 0.00 30.57 3.06
202 203 4.122046 CGGTTCAGCATCTTCATGACATA 58.878 43.478 0.00 0.00 30.57 2.29
204 205 5.237996 CGGTTCAGCATCTTCATGACATATT 59.762 40.000 0.00 0.00 30.57 1.28
205 206 6.565435 CGGTTCAGCATCTTCATGACATATTC 60.565 42.308 0.00 0.00 30.57 1.75
206 207 6.485984 GGTTCAGCATCTTCATGACATATTCT 59.514 38.462 0.00 0.00 30.57 2.40
207 208 7.307870 GGTTCAGCATCTTCATGACATATTCTC 60.308 40.741 0.00 0.00 30.57 2.87
209 210 7.506971 TCAGCATCTTCATGACATATTCTCTT 58.493 34.615 0.00 0.00 30.57 2.85
210 211 7.991460 TCAGCATCTTCATGACATATTCTCTTT 59.009 33.333 0.00 0.00 30.57 2.52
211 212 8.622157 CAGCATCTTCATGACATATTCTCTTTT 58.378 33.333 0.00 0.00 30.57 2.27
212 213 9.186837 AGCATCTTCATGACATATTCTCTTTTT 57.813 29.630 0.00 0.00 30.57 1.94
231 232 3.574284 TTTTGGCTCGAACCATTCATG 57.426 42.857 8.68 0.00 40.13 3.07
232 233 2.198827 TTGGCTCGAACCATTCATGT 57.801 45.000 8.68 0.00 40.13 3.21
233 234 1.452110 TGGCTCGAACCATTCATGTG 58.548 50.000 2.67 0.00 33.75 3.21
234 235 0.099436 GGCTCGAACCATTCATGTGC 59.901 55.000 0.00 0.00 0.00 4.57
235 236 1.089920 GCTCGAACCATTCATGTGCT 58.910 50.000 0.00 0.00 0.00 4.40
238 239 3.126858 GCTCGAACCATTCATGTGCTTTA 59.873 43.478 0.00 0.00 0.00 1.85
240 241 5.007626 GCTCGAACCATTCATGTGCTTTATA 59.992 40.000 0.00 0.00 0.00 0.98
241 242 6.458206 GCTCGAACCATTCATGTGCTTTATAA 60.458 38.462 0.00 0.00 0.00 0.98
242 243 6.781138 TCGAACCATTCATGTGCTTTATAAC 58.219 36.000 0.00 0.00 0.00 1.89
243 244 5.971202 CGAACCATTCATGTGCTTTATAACC 59.029 40.000 0.00 0.00 0.00 2.85
244 245 6.404184 CGAACCATTCATGTGCTTTATAACCA 60.404 38.462 0.00 0.00 0.00 3.67
245 246 6.849085 ACCATTCATGTGCTTTATAACCAA 57.151 33.333 0.00 0.00 0.00 3.67
246 247 7.238486 ACCATTCATGTGCTTTATAACCAAA 57.762 32.000 0.00 0.00 0.00 3.28
248 249 7.095910 CCATTCATGTGCTTTATAACCAAACA 58.904 34.615 0.00 0.00 0.00 2.83
249 250 7.765360 CCATTCATGTGCTTTATAACCAAACAT 59.235 33.333 0.00 0.00 0.00 2.71
251 252 7.225784 TCATGTGCTTTATAACCAAACATGT 57.774 32.000 19.24 0.00 42.41 3.21
252 253 7.312154 TCATGTGCTTTATAACCAAACATGTC 58.688 34.615 19.24 0.00 42.41 3.06
253 254 6.892658 TGTGCTTTATAACCAAACATGTCT 57.107 33.333 0.00 0.00 0.00 3.41
254 255 7.987750 TGTGCTTTATAACCAAACATGTCTA 57.012 32.000 0.00 0.00 0.00 2.59
255 256 8.574251 TGTGCTTTATAACCAAACATGTCTAT 57.426 30.769 0.00 0.00 0.00 1.98
256 257 9.019656 TGTGCTTTATAACCAAACATGTCTATT 57.980 29.630 0.00 0.00 0.00 1.73
257 258 9.855021 GTGCTTTATAACCAAACATGTCTATTT 57.145 29.630 0.00 0.00 0.00 1.40
276 277 2.366640 TTTTGAACGATCCCAACCCA 57.633 45.000 0.00 0.00 0.00 4.51
278 279 2.595750 TTGAACGATCCCAACCCATT 57.404 45.000 0.00 0.00 0.00 3.16
279 280 2.122783 TGAACGATCCCAACCCATTC 57.877 50.000 0.00 0.00 0.00 2.67
280 281 1.352687 TGAACGATCCCAACCCATTCA 59.647 47.619 0.00 0.00 0.00 2.57
282 283 2.057137 ACGATCCCAACCCATTCATG 57.943 50.000 0.00 0.00 0.00 3.07
283 284 1.563879 ACGATCCCAACCCATTCATGA 59.436 47.619 0.00 0.00 0.00 3.07
285 286 2.310538 GATCCCAACCCATTCATGACC 58.689 52.381 0.00 0.00 0.00 4.02
286 287 0.034574 TCCCAACCCATTCATGACCG 60.035 55.000 0.00 0.00 0.00 4.79
287 288 1.666209 CCCAACCCATTCATGACCGC 61.666 60.000 0.00 0.00 0.00 5.68
288 289 1.666209 CCAACCCATTCATGACCGCC 61.666 60.000 0.00 0.00 0.00 6.13
290 291 1.863155 AACCCATTCATGACCGCCCT 61.863 55.000 0.00 0.00 0.00 5.19
291 292 1.076777 CCCATTCATGACCGCCCTT 60.077 57.895 0.00 0.00 0.00 3.95
292 293 1.386525 CCCATTCATGACCGCCCTTG 61.387 60.000 0.00 0.00 0.00 3.61
293 294 1.434696 CATTCATGACCGCCCTTGC 59.565 57.895 0.00 0.00 0.00 4.01
295 296 0.611618 ATTCATGACCGCCCTTGCAA 60.612 50.000 0.00 0.00 37.32 4.08
296 297 1.523154 TTCATGACCGCCCTTGCAAC 61.523 55.000 0.00 0.00 37.32 4.17
297 298 2.676471 ATGACCGCCCTTGCAACC 60.676 61.111 0.00 0.00 37.32 3.77
298 299 3.505790 ATGACCGCCCTTGCAACCA 62.506 57.895 0.00 0.00 37.32 3.67
299 300 2.909965 GACCGCCCTTGCAACCAA 60.910 61.111 0.00 0.00 37.32 3.67
301 302 2.028925 CCGCCCTTGCAACCAAAC 59.971 61.111 0.00 0.00 37.32 2.93
303 304 2.661537 GCCCTTGCAACCAAACGC 60.662 61.111 0.00 0.00 37.47 4.84
304 305 2.811101 CCCTTGCAACCAAACGCA 59.189 55.556 0.00 0.00 36.05 5.24
305 306 1.591327 CCCTTGCAACCAAACGCAC 60.591 57.895 0.00 0.00 38.00 5.34
306 307 1.591327 CCTTGCAACCAAACGCACC 60.591 57.895 0.00 0.00 38.00 5.01
308 309 2.015227 CTTGCAACCAAACGCACCCT 62.015 55.000 0.00 0.00 38.00 4.34
309 310 2.027460 GCAACCAAACGCACCCTG 59.973 61.111 0.00 0.00 0.00 4.45
310 311 2.485795 GCAACCAAACGCACCCTGA 61.486 57.895 0.00 0.00 0.00 3.86
312 313 1.101049 CAACCAAACGCACCCTGAGT 61.101 55.000 0.00 0.00 29.66 3.41
323 324 1.304282 CCCTGAGTGAATGGGTGGG 59.696 63.158 0.00 0.00 36.32 4.61
324 325 1.207488 CCCTGAGTGAATGGGTGGGA 61.207 60.000 0.00 0.00 36.32 4.37
326 327 1.133976 CCTGAGTGAATGGGTGGGATC 60.134 57.143 0.00 0.00 0.00 3.36
327 328 1.842562 CTGAGTGAATGGGTGGGATCT 59.157 52.381 0.00 0.00 0.00 2.75
329 330 1.839994 GAGTGAATGGGTGGGATCTGA 59.160 52.381 0.00 0.00 0.00 3.27
330 331 2.441001 GAGTGAATGGGTGGGATCTGAT 59.559 50.000 0.00 0.00 0.00 2.90
331 332 2.854967 AGTGAATGGGTGGGATCTGATT 59.145 45.455 0.00 0.00 0.00 2.57
335 336 1.985622 TGGGTGGGATCTGATTTCCT 58.014 50.000 10.77 0.00 33.53 3.36
336 337 1.846439 TGGGTGGGATCTGATTTCCTC 59.154 52.381 10.77 7.92 33.53 3.71
337 338 1.846439 GGGTGGGATCTGATTTCCTCA 59.154 52.381 10.77 0.00 33.53 3.86
338 339 2.444766 GGGTGGGATCTGATTTCCTCAT 59.555 50.000 10.77 0.00 32.10 2.90
339 340 3.497584 GGGTGGGATCTGATTTCCTCATC 60.498 52.174 10.77 0.00 32.10 2.92
340 341 3.393941 GGTGGGATCTGATTTCCTCATCT 59.606 47.826 10.77 0.00 32.10 2.90
341 342 4.504689 GGTGGGATCTGATTTCCTCATCTC 60.505 50.000 10.77 0.00 32.10 2.75
342 343 3.649981 TGGGATCTGATTTCCTCATCTCC 59.350 47.826 10.77 0.00 35.24 3.71
343 344 3.909364 GGGATCTGATTTCCTCATCTCCT 59.091 47.826 0.00 0.00 35.84 3.69
345 346 4.347583 GGATCTGATTTCCTCATCTCCTGT 59.652 45.833 0.00 0.00 34.08 4.00
346 347 5.541868 GGATCTGATTTCCTCATCTCCTGTA 59.458 44.000 0.00 0.00 34.08 2.74
348 349 5.523588 TCTGATTTCCTCATCTCCTGTACT 58.476 41.667 0.00 0.00 32.10 2.73
349 350 5.362143 TCTGATTTCCTCATCTCCTGTACTG 59.638 44.000 0.00 0.00 32.10 2.74
350 351 5.026121 TGATTTCCTCATCTCCTGTACTGT 58.974 41.667 0.00 0.00 0.00 3.55
351 352 6.194967 TGATTTCCTCATCTCCTGTACTGTA 58.805 40.000 0.00 0.00 0.00 2.74
352 353 6.841229 TGATTTCCTCATCTCCTGTACTGTAT 59.159 38.462 0.00 0.00 0.00 2.29
354 355 5.130705 TCCTCATCTCCTGTACTGTATGT 57.869 43.478 0.00 0.00 0.00 2.29
355 356 6.262056 TCCTCATCTCCTGTACTGTATGTA 57.738 41.667 0.00 0.00 0.00 2.29
378 379 2.292267 CACATGAGTGGGAATACTGCC 58.708 52.381 0.00 0.00 42.13 4.85
379 380 2.092753 CACATGAGTGGGAATACTGCCT 60.093 50.000 0.00 0.00 42.13 4.75
381 382 1.204146 TGAGTGGGAATACTGCCTCC 58.796 55.000 0.00 0.00 33.20 4.30
382 383 1.204146 GAGTGGGAATACTGCCTCCA 58.796 55.000 0.00 0.00 33.20 3.86
383 384 1.559682 GAGTGGGAATACTGCCTCCAA 59.440 52.381 0.00 0.00 33.20 3.53
384 385 1.992557 AGTGGGAATACTGCCTCCAAA 59.007 47.619 0.00 0.00 33.20 3.28
385 386 2.025887 AGTGGGAATACTGCCTCCAAAG 60.026 50.000 0.00 0.00 33.20 2.77
386 387 1.340991 TGGGAATACTGCCTCCAAAGC 60.341 52.381 0.00 0.00 33.20 3.51
387 388 1.064389 GGGAATACTGCCTCCAAAGCT 60.064 52.381 0.00 0.00 32.95 3.74
389 390 2.019984 GAATACTGCCTCCAAAGCTGG 58.980 52.381 0.00 0.00 45.08 4.85
390 391 0.394899 ATACTGCCTCCAAAGCTGGC 60.395 55.000 5.08 5.08 43.17 4.85
406 407 1.327156 CTGGCAAAGCAACAAAAACCG 59.673 47.619 0.00 0.00 0.00 4.44
407 408 1.066858 TGGCAAAGCAACAAAAACCGA 60.067 42.857 0.00 0.00 0.00 4.69
408 409 2.209273 GGCAAAGCAACAAAAACCGAT 58.791 42.857 0.00 0.00 0.00 4.18
409 410 2.032979 GGCAAAGCAACAAAAACCGATG 60.033 45.455 0.00 0.00 0.00 3.84
410 411 2.607180 GCAAAGCAACAAAAACCGATGT 59.393 40.909 0.00 0.00 0.00 3.06
411 412 3.302415 GCAAAGCAACAAAAACCGATGTC 60.302 43.478 0.00 0.00 0.00 3.06
412 413 3.791973 AAGCAACAAAAACCGATGTCA 57.208 38.095 0.00 0.00 0.00 3.58
413 414 3.078594 AGCAACAAAAACCGATGTCAC 57.921 42.857 0.00 0.00 0.00 3.67
414 415 2.124122 GCAACAAAAACCGATGTCACC 58.876 47.619 0.00 0.00 0.00 4.02
415 416 2.223711 GCAACAAAAACCGATGTCACCT 60.224 45.455 0.00 0.00 0.00 4.00
416 417 3.371168 CAACAAAAACCGATGTCACCTG 58.629 45.455 0.00 0.00 0.00 4.00
417 418 2.925724 ACAAAAACCGATGTCACCTGA 58.074 42.857 0.00 0.00 0.00 3.86
418 419 3.283751 ACAAAAACCGATGTCACCTGAA 58.716 40.909 0.00 0.00 0.00 3.02
421 422 1.508632 AACCGATGTCACCTGAAACG 58.491 50.000 0.00 0.00 0.00 3.60
423 424 0.037697 CCGATGTCACCTGAAACGGA 60.038 55.000 0.00 0.00 37.96 4.69
425 426 1.068474 GATGTCACCTGAAACGGACG 58.932 55.000 0.00 0.00 33.04 4.79
426 427 0.949105 ATGTCACCTGAAACGGACGC 60.949 55.000 0.00 0.00 33.04 5.19
427 428 1.593209 GTCACCTGAAACGGACGCA 60.593 57.895 0.00 0.00 0.00 5.24
428 429 0.949105 GTCACCTGAAACGGACGCAT 60.949 55.000 0.00 0.00 0.00 4.73
429 430 0.669318 TCACCTGAAACGGACGCATC 60.669 55.000 0.00 0.00 0.00 3.91
430 431 1.736645 ACCTGAAACGGACGCATCG 60.737 57.895 0.00 0.00 0.00 3.84
432 433 1.011968 CCTGAAACGGACGCATCGAA 61.012 55.000 0.00 0.00 0.00 3.71
433 434 0.999406 CTGAAACGGACGCATCGAAT 59.001 50.000 0.00 0.00 0.00 3.34
435 436 1.921887 TGAAACGGACGCATCGAATAC 59.078 47.619 0.00 0.00 0.00 1.89
436 437 2.190981 GAAACGGACGCATCGAATACT 58.809 47.619 0.00 0.00 0.00 2.12
437 438 1.556564 AACGGACGCATCGAATACTG 58.443 50.000 0.00 0.00 0.00 2.74
438 439 0.870307 ACGGACGCATCGAATACTGC 60.870 55.000 0.00 0.00 35.02 4.40
440 441 0.249489 GGACGCATCGAATACTGCCT 60.249 55.000 3.28 0.00 34.89 4.75
441 442 1.571919 GACGCATCGAATACTGCCTT 58.428 50.000 3.28 0.00 34.89 4.35
442 443 1.933853 GACGCATCGAATACTGCCTTT 59.066 47.619 3.28 0.00 34.89 3.11
443 444 1.665679 ACGCATCGAATACTGCCTTTG 59.334 47.619 3.28 0.00 34.89 2.77
444 445 1.595489 CGCATCGAATACTGCCTTTGC 60.595 52.381 3.28 0.00 34.89 3.68
445 446 1.268743 GCATCGAATACTGCCTTTGCC 60.269 52.381 0.00 0.00 36.33 4.52
446 447 2.292267 CATCGAATACTGCCTTTGCCT 58.708 47.619 0.00 0.00 36.33 4.75
448 449 0.099436 CGAATACTGCCTTTGCCTGC 59.901 55.000 0.00 0.00 36.33 4.85
449 450 1.176527 GAATACTGCCTTTGCCTGCA 58.823 50.000 0.00 0.00 36.33 4.41
450 451 1.753073 GAATACTGCCTTTGCCTGCAT 59.247 47.619 0.00 0.00 36.79 3.96
451 452 1.108776 ATACTGCCTTTGCCTGCATG 58.891 50.000 0.00 0.00 36.79 4.06
452 453 0.251297 TACTGCCTTTGCCTGCATGT 60.251 50.000 0.00 0.00 36.79 3.21
453 454 0.251297 ACTGCCTTTGCCTGCATGTA 60.251 50.000 0.00 0.00 36.79 2.29
454 455 0.171903 CTGCCTTTGCCTGCATGTAC 59.828 55.000 0.00 0.00 36.79 2.90
456 457 1.586154 GCCTTTGCCTGCATGTACGT 61.586 55.000 0.00 0.00 0.00 3.57
462 463 0.734942 GCCTGCATGTACGTACGTGT 60.735 55.000 35.88 17.85 43.38 4.49
463 464 1.705256 CCTGCATGTACGTACGTGTT 58.295 50.000 35.88 14.82 43.38 3.32
464 465 1.652124 CCTGCATGTACGTACGTGTTC 59.348 52.381 35.88 25.49 43.38 3.18
465 466 2.321263 CTGCATGTACGTACGTGTTCA 58.679 47.619 35.88 27.77 43.38 3.18
466 467 2.921121 CTGCATGTACGTACGTGTTCAT 59.079 45.455 35.88 24.65 43.38 2.57
467 468 2.918600 TGCATGTACGTACGTGTTCATC 59.081 45.455 35.88 24.37 43.38 2.92
468 469 2.036004 GCATGTACGTACGTGTTCATCG 60.036 50.000 35.88 21.34 43.38 3.84
469 470 2.245795 TGTACGTACGTGTTCATCGG 57.754 50.000 30.25 0.00 0.00 4.18
470 471 1.535028 TGTACGTACGTGTTCATCGGT 59.465 47.619 30.25 1.85 0.00 4.69
471 472 1.906966 GTACGTACGTGTTCATCGGTG 59.093 52.381 30.25 0.00 0.00 4.94
472 473 1.005294 ACGTACGTGTTCATCGGTGC 61.005 55.000 22.14 0.00 0.00 5.01
473 474 1.004785 CGTACGTGTTCATCGGTGCA 61.005 55.000 7.22 0.00 0.00 4.57
474 475 0.713883 GTACGTGTTCATCGGTGCAG 59.286 55.000 0.00 0.00 0.00 4.41
475 476 0.389296 TACGTGTTCATCGGTGCAGG 60.389 55.000 0.00 0.00 0.00 4.85
476 477 2.870372 GTGTTCATCGGTGCAGGC 59.130 61.111 0.00 0.00 0.00 4.85
479 480 1.750399 GTTCATCGGTGCAGGCCAT 60.750 57.895 5.01 0.00 0.00 4.40
480 481 1.451927 TTCATCGGTGCAGGCCATC 60.452 57.895 5.01 0.00 0.00 3.51
486 487 2.650196 GTGCAGGCCATCGCAAAA 59.350 55.556 15.16 0.00 40.44 2.44
487 488 1.006337 GTGCAGGCCATCGCAAAAA 60.006 52.632 15.16 0.00 40.44 1.94
507 508 4.647424 AAAAGAAAAGTTCATCGGTGCA 57.353 36.364 0.00 0.00 0.00 4.57
508 509 3.626028 AAGAAAAGTTCATCGGTGCAC 57.374 42.857 8.80 8.80 0.00 4.57
509 510 1.531149 AGAAAAGTTCATCGGTGCACG 59.469 47.619 11.45 6.55 46.11 5.34
510 511 0.040425 AAAAGTTCATCGGTGCACGC 60.040 50.000 11.45 2.85 43.86 5.34
512 513 3.047280 GTTCATCGGTGCACGCCA 61.047 61.111 11.45 0.00 43.86 5.69
513 514 2.741985 TTCATCGGTGCACGCCAG 60.742 61.111 11.45 2.29 43.86 4.85
515 516 3.490759 CATCGGTGCACGCCAGAC 61.491 66.667 11.45 0.00 43.86 3.51
516 517 4.002506 ATCGGTGCACGCCAGACA 62.003 61.111 11.45 0.00 43.86 3.41
517 518 3.315142 ATCGGTGCACGCCAGACAT 62.315 57.895 11.45 0.00 43.86 3.06
518 519 1.955495 ATCGGTGCACGCCAGACATA 61.955 55.000 11.45 0.00 43.86 2.29
520 521 1.815421 GGTGCACGCCAGACATAGG 60.815 63.158 11.45 0.00 0.00 2.57
521 522 1.218047 GTGCACGCCAGACATAGGA 59.782 57.895 0.00 0.00 0.00 2.94
522 523 0.179073 GTGCACGCCAGACATAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
523 524 0.541392 TGCACGCCAGACATAGGATT 59.459 50.000 0.00 0.00 0.00 3.01
524 525 1.065491 TGCACGCCAGACATAGGATTT 60.065 47.619 0.00 0.00 0.00 2.17
525 526 2.017049 GCACGCCAGACATAGGATTTT 58.983 47.619 0.00 0.00 0.00 1.82
526 527 2.423538 GCACGCCAGACATAGGATTTTT 59.576 45.455 0.00 0.00 0.00 1.94
562 563 1.134699 TCACGAGATCAATGGACTGGC 60.135 52.381 0.00 0.00 0.00 4.85
563 564 0.179000 ACGAGATCAATGGACTGGCC 59.821 55.000 0.00 0.00 37.10 5.36
575 576 3.953775 CTGGCCAACGTGGGGACT 61.954 66.667 11.96 0.00 38.19 3.85
576 577 3.491598 CTGGCCAACGTGGGGACTT 62.492 63.158 11.96 0.00 38.19 3.01
578 579 2.983592 GCCAACGTGGGGACTTGG 60.984 66.667 11.96 3.14 38.19 3.61
579 580 2.833227 CCAACGTGGGGACTTGGA 59.167 61.111 0.00 0.00 37.25 3.53
580 581 1.378762 CCAACGTGGGGACTTGGAT 59.621 57.895 0.00 0.00 37.25 3.41
581 582 0.251165 CCAACGTGGGGACTTGGATT 60.251 55.000 0.00 0.00 37.25 3.01
582 583 0.881118 CAACGTGGGGACTTGGATTG 59.119 55.000 0.00 0.00 0.00 2.67
584 585 1.378762 CGTGGGGACTTGGATTGGT 59.621 57.895 0.00 0.00 0.00 3.67
585 586 0.616371 CGTGGGGACTTGGATTGGTA 59.384 55.000 0.00 0.00 0.00 3.25
586 587 1.406887 CGTGGGGACTTGGATTGGTAG 60.407 57.143 0.00 0.00 0.00 3.18
587 588 1.633945 GTGGGGACTTGGATTGGTAGT 59.366 52.381 0.00 0.00 0.00 2.73
588 589 2.041216 GTGGGGACTTGGATTGGTAGTT 59.959 50.000 0.00 0.00 0.00 2.24
590 591 3.521937 TGGGGACTTGGATTGGTAGTTAG 59.478 47.826 0.00 0.00 0.00 2.34
592 593 4.141688 GGGGACTTGGATTGGTAGTTAGAG 60.142 50.000 0.00 0.00 0.00 2.43
593 594 4.715297 GGGACTTGGATTGGTAGTTAGAGA 59.285 45.833 0.00 0.00 0.00 3.10
594 595 5.367060 GGGACTTGGATTGGTAGTTAGAGAT 59.633 44.000 0.00 0.00 0.00 2.75
595 596 6.284459 GGACTTGGATTGGTAGTTAGAGATG 58.716 44.000 0.00 0.00 0.00 2.90
597 598 7.118496 ACTTGGATTGGTAGTTAGAGATGAG 57.882 40.000 0.00 0.00 0.00 2.90
598 599 6.098982 ACTTGGATTGGTAGTTAGAGATGAGG 59.901 42.308 0.00 0.00 0.00 3.86
599 600 4.345257 TGGATTGGTAGTTAGAGATGAGGC 59.655 45.833 0.00 0.00 0.00 4.70
603 604 2.584236 GTAGTTAGAGATGAGGCGGGA 58.416 52.381 0.00 0.00 0.00 5.14
604 605 1.404843 AGTTAGAGATGAGGCGGGAC 58.595 55.000 0.00 0.00 0.00 4.46
605 606 0.389757 GTTAGAGATGAGGCGGGACC 59.610 60.000 0.00 0.00 39.61 4.46
606 607 0.759436 TTAGAGATGAGGCGGGACCC 60.759 60.000 0.00 0.00 40.58 4.46
609 610 3.083997 GATGAGGCGGGACCCACT 61.084 66.667 12.15 7.99 40.58 4.00
610 611 2.610859 ATGAGGCGGGACCCACTT 60.611 61.111 12.15 0.00 40.58 3.16
611 612 2.595009 GATGAGGCGGGACCCACTTC 62.595 65.000 12.15 7.60 40.58 3.01
612 613 3.319198 GAGGCGGGACCCACTTCA 61.319 66.667 12.15 0.00 40.58 3.02
614 615 2.198304 GAGGCGGGACCCACTTCATT 62.198 60.000 12.15 0.00 40.58 2.57
615 616 2.046285 GGCGGGACCCACTTCATTG 61.046 63.158 12.15 0.00 0.00 2.82
616 617 1.002624 GCGGGACCCACTTCATTGA 60.003 57.895 12.15 0.00 0.00 2.57
619 620 2.235016 CGGGACCCACTTCATTGAAAA 58.765 47.619 12.15 0.00 0.00 2.29
620 621 2.030274 CGGGACCCACTTCATTGAAAAC 60.030 50.000 12.15 0.00 0.00 2.43
621 622 2.962421 GGGACCCACTTCATTGAAAACA 59.038 45.455 5.33 0.00 0.00 2.83
623 624 4.501400 GGGACCCACTTCATTGAAAACAAG 60.501 45.833 5.33 0.00 0.00 3.16
624 625 4.501400 GGACCCACTTCATTGAAAACAAGG 60.501 45.833 0.01 0.78 0.00 3.61
625 626 3.387699 ACCCACTTCATTGAAAACAAGGG 59.612 43.478 14.66 14.66 0.00 3.95
626 627 3.244181 CCCACTTCATTGAAAACAAGGGG 60.244 47.826 0.01 0.00 40.68 4.79
627 628 3.244181 CCACTTCATTGAAAACAAGGGGG 60.244 47.826 0.01 0.00 38.44 5.40
628 629 2.368548 ACTTCATTGAAAACAAGGGGGC 59.631 45.455 0.01 0.00 0.00 5.80
629 630 2.094100 TCATTGAAAACAAGGGGGCA 57.906 45.000 0.00 0.00 0.00 5.36
630 631 1.969923 TCATTGAAAACAAGGGGGCAG 59.030 47.619 0.00 0.00 0.00 4.85
632 633 0.031616 TTGAAAACAAGGGGGCAGGT 60.032 50.000 0.00 0.00 0.00 4.00
633 634 0.469144 TGAAAACAAGGGGGCAGGTC 60.469 55.000 0.00 0.00 0.00 3.85
634 635 0.469144 GAAAACAAGGGGGCAGGTCA 60.469 55.000 0.00 0.00 0.00 4.02
646 647 1.754226 GGCAGGTCAGTTGGTTGAAAA 59.246 47.619 0.00 0.00 0.00 2.29
679 680 9.668497 GTGAAAGAGTAAAGGTAGGATTATTGT 57.332 33.333 0.00 0.00 0.00 2.71
746 750 0.032130 TCACAGGACGACAACAGCTC 59.968 55.000 0.00 0.00 0.00 4.09
817 827 0.730155 CGCGCACGTCCTTTAGTACA 60.730 55.000 8.75 0.00 33.53 2.90
859 869 6.197096 CCACTGAATTATTCATTTTGCTACGC 59.803 38.462 8.17 0.00 39.30 4.42
861 871 7.273164 CACTGAATTATTCATTTTGCTACGCAA 59.727 33.333 8.17 0.00 42.03 4.85
862 872 7.273381 ACTGAATTATTCATTTTGCTACGCAAC 59.727 33.333 8.17 0.00 42.79 4.17
863 873 6.250315 TGAATTATTCATTTTGCTACGCAACG 59.750 34.615 3.20 0.00 40.60 4.10
892 902 6.814644 CCAACATTTCACTCACGGTAATACTA 59.185 38.462 0.00 0.00 0.00 1.82
893 903 7.010183 CCAACATTTCACTCACGGTAATACTAG 59.990 40.741 0.00 0.00 0.00 2.57
894 904 7.166691 ACATTTCACTCACGGTAATACTAGT 57.833 36.000 0.00 0.00 0.00 2.57
896 906 8.742777 ACATTTCACTCACGGTAATACTAGTAA 58.257 33.333 6.70 0.00 0.00 2.24
925 935 1.230324 GCAGAGGGTGAACAGAACAC 58.770 55.000 0.00 0.00 37.51 3.32
971 1007 5.011023 TGAGAGTAAGACACACATCACACAT 59.989 40.000 0.00 0.00 0.00 3.21
980 1016 3.932710 CACACATCACACATACTACACCC 59.067 47.826 0.00 0.00 0.00 4.61
1215 2282 0.107508 TCGACGTCTACCGGATCCTT 60.108 55.000 9.46 0.00 42.24 3.36
1382 2449 3.482783 GCACCTCTTCTGCGTCGC 61.483 66.667 11.10 11.10 0.00 5.19
1648 2717 2.126071 ATGACCGTCGCCGACTTG 60.126 61.111 16.07 8.79 35.63 3.16
1908 3068 4.617520 TGCAGCGACGGCAAGGAA 62.618 61.111 0.00 0.00 43.41 3.36
1911 3071 3.626924 AGCGACGGCAAGGAAGGT 61.627 61.111 0.00 0.00 43.41 3.50
2107 3267 3.647771 GGGAGGGGTGGGTGTCAC 61.648 72.222 0.00 0.00 45.34 3.67
2148 3308 2.629617 CAAGGCCAAGGAGAAACAATGT 59.370 45.455 5.01 0.00 0.00 2.71
2202 3362 0.601057 TCGTCAAGCAGATCCACGAA 59.399 50.000 0.00 0.00 36.59 3.85
2295 3472 2.637382 TGTGTGATGGTGTGGTATCTGT 59.363 45.455 0.00 0.00 0.00 3.41
2305 3482 4.081642 GGTGTGGTATCTGTGTATGTGACT 60.082 45.833 0.00 0.00 0.00 3.41
2318 3499 6.074034 TGTGTATGTGACTTATGTTTGTGTCG 60.074 38.462 0.00 0.00 32.64 4.35
2321 3502 5.398176 TGTGACTTATGTTTGTGTCGTTC 57.602 39.130 0.00 0.00 32.64 3.95
2326 3510 2.755836 ATGTTTGTGTCGTTCTGTGC 57.244 45.000 0.00 0.00 0.00 4.57
2329 3513 0.927537 TTTGTGTCGTTCTGTGCTCG 59.072 50.000 0.00 0.00 0.00 5.03
2351 3535 2.680913 GCGTGATGCTGTGGTGTCC 61.681 63.158 0.00 0.00 41.73 4.02
2356 3542 0.530744 GATGCTGTGGTGTCCGAGTA 59.469 55.000 0.00 0.00 0.00 2.59
2365 3551 3.380637 GTGGTGTCCGAGTATATGTGACT 59.619 47.826 0.00 0.00 0.00 3.41
2367 3553 4.142249 TGGTGTCCGAGTATATGTGACTTG 60.142 45.833 0.00 0.00 0.00 3.16
2385 3571 3.630312 ACTTGTGTTTGCTCGTATGGTTT 59.370 39.130 0.00 0.00 0.00 3.27
2392 3578 7.041303 TGTGTTTGCTCGTATGGTTTGTTAATA 60.041 33.333 0.00 0.00 0.00 0.98
2395 3581 8.632551 GTTTGCTCGTATGGTTTGTTAATAAAC 58.367 33.333 16.91 16.91 39.28 2.01
2396 3582 7.675962 TGCTCGTATGGTTTGTTAATAAACT 57.324 32.000 22.21 10.17 39.78 2.66
2397 3583 8.101654 TGCTCGTATGGTTTGTTAATAAACTT 57.898 30.769 22.21 14.70 39.78 2.66
2398 3584 8.018520 TGCTCGTATGGTTTGTTAATAAACTTG 58.981 33.333 22.21 11.16 39.78 3.16
2399 3585 7.483691 GCTCGTATGGTTTGTTAATAAACTTGG 59.516 37.037 22.21 11.02 39.78 3.61
2400 3586 7.818642 TCGTATGGTTTGTTAATAAACTTGGG 58.181 34.615 22.21 11.54 39.78 4.12
2401 3587 6.528774 CGTATGGTTTGTTAATAAACTTGGGC 59.471 38.462 22.21 9.80 39.78 5.36
2402 3588 5.216614 TGGTTTGTTAATAAACTTGGGCC 57.783 39.130 22.21 0.00 39.78 5.80
2403 3589 4.239304 GGTTTGTTAATAAACTTGGGCCG 58.761 43.478 22.21 0.00 39.78 6.13
2404 3590 4.239304 GTTTGTTAATAAACTTGGGCCGG 58.761 43.478 17.65 0.00 37.52 6.13
2405 3591 3.157750 TGTTAATAAACTTGGGCCGGT 57.842 42.857 1.90 0.00 36.51 5.28
2406 3592 3.083293 TGTTAATAAACTTGGGCCGGTC 58.917 45.455 1.90 0.00 36.51 4.79
2407 3593 2.027003 TAATAAACTTGGGCCGGTCG 57.973 50.000 1.90 0.00 0.00 4.79
2408 3594 1.310216 AATAAACTTGGGCCGGTCGC 61.310 55.000 1.90 4.53 0.00 5.19
2409 3595 2.472414 ATAAACTTGGGCCGGTCGCA 62.472 55.000 1.90 7.47 40.31 5.10
2477 3664 3.852316 GACTTTTCGACCGTCGGG 58.148 61.111 20.35 10.79 40.88 5.14
2503 3690 0.108329 AAATCGGTCCAATCGCGTCT 60.108 50.000 5.77 0.00 0.00 4.18
2897 4198 1.075970 CACTCCCTCTCCCCGATGA 60.076 63.158 0.00 0.00 0.00 2.92
3064 4365 3.346734 GGAGTGCCCATTCCCCCA 61.347 66.667 0.00 0.00 31.68 4.96
3099 4400 2.236146 TCACCAAGCCATCATACTTCGT 59.764 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.261981 ACCCATTCATACGACACCTTC 57.738 47.619 0.00 0.00 0.00 3.46
1 2 3.343617 CAACCCATTCATACGACACCTT 58.656 45.455 0.00 0.00 0.00 3.50
2 3 2.355716 CCAACCCATTCATACGACACCT 60.356 50.000 0.00 0.00 0.00 4.00
5 6 1.909986 TCCCAACCCATTCATACGACA 59.090 47.619 0.00 0.00 0.00 4.35
7 8 1.210967 GGTCCCAACCCATTCATACGA 59.789 52.381 0.00 0.00 39.93 3.43
11 12 0.407918 AACGGTCCCAACCCATTCAT 59.592 50.000 0.00 0.00 43.21 2.57
12 13 0.250989 GAACGGTCCCAACCCATTCA 60.251 55.000 0.00 0.00 43.21 2.57
13 14 0.250989 TGAACGGTCCCAACCCATTC 60.251 55.000 0.00 0.00 43.21 2.67
14 15 0.186386 TTGAACGGTCCCAACCCATT 59.814 50.000 0.00 0.00 43.21 3.16
15 16 0.407918 ATTGAACGGTCCCAACCCAT 59.592 50.000 0.00 0.00 43.21 4.00
16 17 0.186386 AATTGAACGGTCCCAACCCA 59.814 50.000 0.00 0.00 43.21 4.51
17 18 1.334160 AAATTGAACGGTCCCAACCC 58.666 50.000 0.00 0.00 43.21 4.11
46 47 6.700960 GTCAAACACATGAATTGAATGGTTCA 59.299 34.615 0.00 0.00 38.57 3.18
48 49 6.702723 CAGTCAAACACATGAATTGAATGGTT 59.297 34.615 21.22 4.27 42.33 3.67
51 52 7.933728 TTCAGTCAAACACATGAATTGAATG 57.066 32.000 22.12 22.12 45.44 2.67
59 60 7.882791 ACCACTTATATTCAGTCAAACACATGA 59.117 33.333 0.00 0.00 0.00 3.07
61 62 7.882791 TCACCACTTATATTCAGTCAAACACAT 59.117 33.333 0.00 0.00 0.00 3.21
62 63 7.220740 TCACCACTTATATTCAGTCAAACACA 58.779 34.615 0.00 0.00 0.00 3.72
64 65 6.371548 GCTCACCACTTATATTCAGTCAAACA 59.628 38.462 0.00 0.00 0.00 2.83
65 66 6.595716 AGCTCACCACTTATATTCAGTCAAAC 59.404 38.462 0.00 0.00 0.00 2.93
66 67 6.711277 AGCTCACCACTTATATTCAGTCAAA 58.289 36.000 0.00 0.00 0.00 2.69
67 68 6.299805 AGCTCACCACTTATATTCAGTCAA 57.700 37.500 0.00 0.00 0.00 3.18
68 69 5.939764 AGCTCACCACTTATATTCAGTCA 57.060 39.130 0.00 0.00 0.00 3.41
69 70 8.894768 AATTAGCTCACCACTTATATTCAGTC 57.105 34.615 0.00 0.00 0.00 3.51
77 78 9.780186 GTCCTAAATAATTAGCTCACCACTTAT 57.220 33.333 0.00 0.00 37.74 1.73
78 79 7.924412 CGTCCTAAATAATTAGCTCACCACTTA 59.076 37.037 0.00 0.00 37.74 2.24
79 80 6.761714 CGTCCTAAATAATTAGCTCACCACTT 59.238 38.462 0.00 0.00 37.74 3.16
80 81 6.281405 CGTCCTAAATAATTAGCTCACCACT 58.719 40.000 0.00 0.00 37.74 4.00
81 82 5.465724 CCGTCCTAAATAATTAGCTCACCAC 59.534 44.000 0.00 0.00 37.74 4.16
82 83 5.454187 CCCGTCCTAAATAATTAGCTCACCA 60.454 44.000 0.00 0.00 37.74 4.17
83 84 4.995487 CCCGTCCTAAATAATTAGCTCACC 59.005 45.833 0.00 0.00 37.74 4.02
84 85 5.695363 GTCCCGTCCTAAATAATTAGCTCAC 59.305 44.000 0.00 0.00 37.74 3.51
85 86 5.221581 GGTCCCGTCCTAAATAATTAGCTCA 60.222 44.000 0.00 0.00 37.74 4.26
88 89 4.753610 GTGGTCCCGTCCTAAATAATTAGC 59.246 45.833 0.00 0.00 37.74 3.09
90 91 4.720773 TGGTGGTCCCGTCCTAAATAATTA 59.279 41.667 0.00 0.00 35.15 1.40
91 92 3.524380 TGGTGGTCCCGTCCTAAATAATT 59.476 43.478 0.00 0.00 35.15 1.40
92 93 3.116959 TGGTGGTCCCGTCCTAAATAAT 58.883 45.455 0.00 0.00 35.15 1.28
93 94 2.502538 CTGGTGGTCCCGTCCTAAATAA 59.497 50.000 0.00 0.00 35.15 1.40
94 95 2.112998 CTGGTGGTCCCGTCCTAAATA 58.887 52.381 0.00 0.00 35.15 1.40
95 96 0.909623 CTGGTGGTCCCGTCCTAAAT 59.090 55.000 0.00 0.00 35.15 1.40
96 97 0.472352 ACTGGTGGTCCCGTCCTAAA 60.472 55.000 0.00 0.00 35.15 1.85
98 99 1.304713 GACTGGTGGTCCCGTCCTA 60.305 63.158 0.00 0.00 40.51 2.94
99 100 2.603776 GACTGGTGGTCCCGTCCT 60.604 66.667 0.00 0.00 40.51 3.85
100 101 2.291043 ATGACTGGTGGTCCCGTCC 61.291 63.158 6.41 0.00 43.99 4.79
102 103 3.068881 CATGACTGGTGGTCCCGT 58.931 61.111 0.00 0.00 43.89 5.28
103 104 2.436646 GCATGACTGGTGGTCCCG 60.437 66.667 0.00 0.00 43.89 5.14
104 105 1.078143 GAGCATGACTGGTGGTCCC 60.078 63.158 0.00 0.00 43.89 4.46
106 107 0.035317 TGTGAGCATGACTGGTGGTC 59.965 55.000 0.00 0.00 44.70 4.02
107 108 0.694771 ATGTGAGCATGACTGGTGGT 59.305 50.000 0.00 0.00 33.37 4.16
110 111 2.833943 TGACTATGTGAGCATGACTGGT 59.166 45.455 0.00 0.00 36.58 4.00
111 112 3.531934 TGACTATGTGAGCATGACTGG 57.468 47.619 0.00 0.00 36.58 4.00
112 113 3.247886 GCATGACTATGTGAGCATGACTG 59.752 47.826 0.00 0.00 39.82 3.51
113 114 3.118519 TGCATGACTATGTGAGCATGACT 60.119 43.478 0.00 0.00 39.82 3.41
115 116 3.547054 TGCATGACTATGTGAGCATGA 57.453 42.857 0.00 0.00 39.82 3.07
117 118 2.552743 GCATGCATGACTATGTGAGCAT 59.447 45.455 30.64 0.00 42.82 3.79
119 120 1.944709 TGCATGCATGACTATGTGAGC 59.055 47.619 30.64 10.98 36.65 4.26
120 121 4.497507 CCTTTGCATGCATGACTATGTGAG 60.498 45.833 30.64 13.72 36.65 3.51
121 122 3.379057 CCTTTGCATGCATGACTATGTGA 59.621 43.478 30.64 0.00 36.65 3.58
122 123 3.490249 CCCTTTGCATGCATGACTATGTG 60.490 47.826 30.64 10.85 36.65 3.21
123 124 2.691526 CCCTTTGCATGCATGACTATGT 59.308 45.455 30.64 0.00 36.65 2.29
124 125 2.691526 ACCCTTTGCATGCATGACTATG 59.308 45.455 30.64 17.48 37.36 2.23
125 126 2.691526 CACCCTTTGCATGCATGACTAT 59.308 45.455 30.64 3.00 0.00 2.12
127 128 0.892755 CACCCTTTGCATGCATGACT 59.107 50.000 30.64 0.05 0.00 3.41
128 129 0.108520 CCACCCTTTGCATGCATGAC 60.109 55.000 30.64 20.41 0.00 3.06
129 130 1.890625 GCCACCCTTTGCATGCATGA 61.891 55.000 30.64 12.55 0.00 3.07
130 131 1.448893 GCCACCCTTTGCATGCATG 60.449 57.895 23.37 22.70 0.00 4.06
131 132 2.662070 GGCCACCCTTTGCATGCAT 61.662 57.895 23.37 2.36 0.00 3.96
132 133 3.312718 GGCCACCCTTTGCATGCA 61.313 61.111 18.46 18.46 0.00 3.96
133 134 2.187896 AATGGCCACCCTTTGCATGC 62.188 55.000 8.16 11.82 0.00 4.06
135 136 0.325602 CAAATGGCCACCCTTTGCAT 59.674 50.000 8.16 0.00 0.00 3.96
136 137 0.762082 TCAAATGGCCACCCTTTGCA 60.762 50.000 20.77 10.39 33.24 4.08
137 138 0.614812 ATCAAATGGCCACCCTTTGC 59.385 50.000 20.77 0.00 33.24 3.68
140 141 1.185315 CGAATCAAATGGCCACCCTT 58.815 50.000 8.16 0.00 0.00 3.95
141 142 0.331278 TCGAATCAAATGGCCACCCT 59.669 50.000 8.16 0.00 0.00 4.34
142 143 0.455815 GTCGAATCAAATGGCCACCC 59.544 55.000 8.16 0.00 0.00 4.61
143 144 0.455815 GGTCGAATCAAATGGCCACC 59.544 55.000 8.16 0.00 0.00 4.61
146 147 1.308998 ATCGGTCGAATCAAATGGCC 58.691 50.000 0.00 0.00 0.00 5.36
147 148 3.108144 CAAATCGGTCGAATCAAATGGC 58.892 45.455 0.00 0.00 0.00 4.40
148 149 3.694734 CCAAATCGGTCGAATCAAATGG 58.305 45.455 0.00 0.00 0.00 3.16
162 163 0.239879 CGTTCCACCCAACCAAATCG 59.760 55.000 0.00 0.00 0.00 3.34
163 164 0.601057 CCGTTCCACCCAACCAAATC 59.399 55.000 0.00 0.00 0.00 2.17
164 165 0.105913 ACCGTTCCACCCAACCAAAT 60.106 50.000 0.00 0.00 0.00 2.32
165 166 0.324460 AACCGTTCCACCCAACCAAA 60.324 50.000 0.00 0.00 0.00 3.28
166 167 0.752376 GAACCGTTCCACCCAACCAA 60.752 55.000 0.00 0.00 0.00 3.67
167 168 1.152922 GAACCGTTCCACCCAACCA 60.153 57.895 0.00 0.00 0.00 3.67
168 169 1.152922 TGAACCGTTCCACCCAACC 60.153 57.895 8.80 0.00 0.00 3.77
169 170 1.792118 GCTGAACCGTTCCACCCAAC 61.792 60.000 8.80 0.00 0.00 3.77
170 171 1.527380 GCTGAACCGTTCCACCCAA 60.527 57.895 8.80 0.00 0.00 4.12
171 172 2.063015 ATGCTGAACCGTTCCACCCA 62.063 55.000 8.80 1.59 0.00 4.51
172 173 1.303317 ATGCTGAACCGTTCCACCC 60.303 57.895 8.80 0.00 0.00 4.61
173 174 0.321653 AGATGCTGAACCGTTCCACC 60.322 55.000 8.80 0.00 0.00 4.61
174 175 1.464997 GAAGATGCTGAACCGTTCCAC 59.535 52.381 8.80 1.68 0.00 4.02
176 177 1.808411 TGAAGATGCTGAACCGTTCC 58.192 50.000 8.80 0.00 0.00 3.62
177 178 3.002791 TCATGAAGATGCTGAACCGTTC 58.997 45.455 4.18 4.18 0.00 3.95
178 179 2.744202 GTCATGAAGATGCTGAACCGTT 59.256 45.455 0.00 0.00 0.00 4.44
179 180 2.289631 TGTCATGAAGATGCTGAACCGT 60.290 45.455 0.00 0.00 0.00 4.83
180 181 2.349590 TGTCATGAAGATGCTGAACCG 58.650 47.619 0.00 0.00 0.00 4.44
181 182 6.485984 AGAATATGTCATGAAGATGCTGAACC 59.514 38.462 0.00 0.00 0.00 3.62
182 183 7.441760 AGAGAATATGTCATGAAGATGCTGAAC 59.558 37.037 0.00 0.00 0.00 3.18
183 184 7.506971 AGAGAATATGTCATGAAGATGCTGAA 58.493 34.615 0.00 0.00 0.00 3.02
184 185 7.063934 AGAGAATATGTCATGAAGATGCTGA 57.936 36.000 0.00 0.00 0.00 4.26
185 186 7.731882 AAGAGAATATGTCATGAAGATGCTG 57.268 36.000 0.00 0.00 0.00 4.41
186 187 8.749026 AAAAGAGAATATGTCATGAAGATGCT 57.251 30.769 0.00 0.00 0.00 3.79
210 211 3.320541 ACATGAATGGTTCGAGCCAAAAA 59.679 39.130 25.48 13.23 42.48 1.94
211 212 2.890311 ACATGAATGGTTCGAGCCAAAA 59.110 40.909 25.48 13.59 42.48 2.44
212 213 2.228582 CACATGAATGGTTCGAGCCAAA 59.771 45.455 25.48 13.95 42.48 3.28
213 214 1.811965 CACATGAATGGTTCGAGCCAA 59.188 47.619 25.48 9.47 42.48 4.52
214 215 1.452110 CACATGAATGGTTCGAGCCA 58.548 50.000 23.98 23.98 43.48 4.75
215 216 0.099436 GCACATGAATGGTTCGAGCC 59.901 55.000 11.99 11.99 0.00 4.70
216 217 1.089920 AGCACATGAATGGTTCGAGC 58.910 50.000 0.00 0.00 0.00 5.03
217 218 3.837213 AAAGCACATGAATGGTTCGAG 57.163 42.857 0.00 0.00 39.32 4.04
218 219 6.183360 GGTTATAAAGCACATGAATGGTTCGA 60.183 38.462 0.00 0.00 39.32 3.71
219 220 5.971202 GGTTATAAAGCACATGAATGGTTCG 59.029 40.000 0.00 0.00 39.32 3.95
220 221 6.862209 TGGTTATAAAGCACATGAATGGTTC 58.138 36.000 0.00 0.00 39.32 3.62
221 222 6.849085 TGGTTATAAAGCACATGAATGGTT 57.151 33.333 0.00 0.00 41.95 3.67
222 223 6.849085 TTGGTTATAAAGCACATGAATGGT 57.151 33.333 0.00 0.00 38.84 3.55
223 224 7.095910 TGTTTGGTTATAAAGCACATGAATGG 58.904 34.615 0.00 0.00 38.84 3.16
224 225 8.597227 CATGTTTGGTTATAAAGCACATGAATG 58.403 33.333 16.31 0.00 41.79 2.67
225 226 8.313292 ACATGTTTGGTTATAAAGCACATGAAT 58.687 29.630 22.73 8.91 41.79 2.57
226 227 7.665690 ACATGTTTGGTTATAAAGCACATGAA 58.334 30.769 22.73 1.35 41.79 2.57
227 228 7.176515 AGACATGTTTGGTTATAAAGCACATGA 59.823 33.333 22.73 0.00 41.79 3.07
229 230 7.466746 AGACATGTTTGGTTATAAAGCACAT 57.533 32.000 0.00 0.00 38.84 3.21
230 231 6.892658 AGACATGTTTGGTTATAAAGCACA 57.107 33.333 0.00 0.00 38.84 4.57
231 232 9.855021 AAATAGACATGTTTGGTTATAAAGCAC 57.145 29.630 0.00 0.00 38.84 4.40
256 257 2.667470 TGGGTTGGGATCGTTCAAAAA 58.333 42.857 0.00 0.00 0.00 1.94
257 258 2.366640 TGGGTTGGGATCGTTCAAAA 57.633 45.000 0.00 0.00 0.00 2.44
258 259 2.595750 ATGGGTTGGGATCGTTCAAA 57.404 45.000 0.00 0.00 0.00 2.69
259 260 2.224892 TGAATGGGTTGGGATCGTTCAA 60.225 45.455 0.00 0.00 34.64 2.69
260 261 1.352687 TGAATGGGTTGGGATCGTTCA 59.647 47.619 0.00 0.00 35.03 3.18
261 262 2.122783 TGAATGGGTTGGGATCGTTC 57.877 50.000 0.00 0.00 0.00 3.95
262 263 2.025416 TCATGAATGGGTTGGGATCGTT 60.025 45.455 0.00 0.00 0.00 3.85
263 264 1.563879 TCATGAATGGGTTGGGATCGT 59.436 47.619 0.00 0.00 0.00 3.73
264 265 1.949525 GTCATGAATGGGTTGGGATCG 59.050 52.381 0.00 0.00 0.00 3.69
265 266 2.310538 GGTCATGAATGGGTTGGGATC 58.689 52.381 0.00 0.00 0.00 3.36
266 267 1.410083 CGGTCATGAATGGGTTGGGAT 60.410 52.381 0.00 0.00 0.00 3.85
267 268 0.034574 CGGTCATGAATGGGTTGGGA 60.035 55.000 0.00 0.00 0.00 4.37
269 270 1.666209 GGCGGTCATGAATGGGTTGG 61.666 60.000 0.00 0.00 0.00 3.77
270 271 1.666209 GGGCGGTCATGAATGGGTTG 61.666 60.000 0.00 0.00 0.00 3.77
271 272 1.379843 GGGCGGTCATGAATGGGTT 60.380 57.895 0.00 0.00 0.00 4.11
272 273 1.863155 AAGGGCGGTCATGAATGGGT 61.863 55.000 0.00 0.00 0.00 4.51
273 274 1.076777 AAGGGCGGTCATGAATGGG 60.077 57.895 0.00 0.00 0.00 4.00
276 277 0.611618 TTGCAAGGGCGGTCATGAAT 60.612 50.000 0.00 0.00 45.35 2.57
278 279 1.971167 GTTGCAAGGGCGGTCATGA 60.971 57.895 0.00 0.00 45.35 3.07
279 280 2.568090 GTTGCAAGGGCGGTCATG 59.432 61.111 0.00 0.00 45.35 3.07
280 281 2.676471 GGTTGCAAGGGCGGTCAT 60.676 61.111 0.00 0.00 45.35 3.06
282 283 2.494530 TTTGGTTGCAAGGGCGGTC 61.495 57.895 0.00 0.00 45.35 4.79
283 284 2.443016 TTTGGTTGCAAGGGCGGT 60.443 55.556 0.00 0.00 45.35 5.68
285 286 2.354539 CGTTTGGTTGCAAGGGCG 60.355 61.111 0.00 0.00 45.35 6.13
286 287 2.661537 GCGTTTGGTTGCAAGGGC 60.662 61.111 0.00 0.00 41.68 5.19
287 288 1.591327 GTGCGTTTGGTTGCAAGGG 60.591 57.895 0.00 0.00 43.75 3.95
288 289 1.591327 GGTGCGTTTGGTTGCAAGG 60.591 57.895 0.00 0.00 43.75 3.61
290 291 2.055042 AGGGTGCGTTTGGTTGCAA 61.055 52.632 0.00 0.00 43.75 4.08
291 292 2.441164 AGGGTGCGTTTGGTTGCA 60.441 55.556 0.00 0.00 39.13 4.08
292 293 2.027460 CAGGGTGCGTTTGGTTGC 59.973 61.111 0.00 0.00 0.00 4.17
293 294 1.101049 ACTCAGGGTGCGTTTGGTTG 61.101 55.000 0.00 0.00 0.00 3.77
295 296 1.525995 CACTCAGGGTGCGTTTGGT 60.526 57.895 0.00 0.00 39.22 3.67
296 297 0.817634 TTCACTCAGGGTGCGTTTGG 60.818 55.000 0.00 0.00 44.98 3.28
297 298 1.069022 CATTCACTCAGGGTGCGTTTG 60.069 52.381 0.00 0.00 44.98 2.93
298 299 1.238439 CATTCACTCAGGGTGCGTTT 58.762 50.000 0.00 0.00 44.98 3.60
299 300 0.606401 CCATTCACTCAGGGTGCGTT 60.606 55.000 0.00 0.00 44.98 4.84
301 302 1.746615 CCCATTCACTCAGGGTGCG 60.747 63.158 0.00 0.00 44.98 5.34
306 307 0.921896 ATCCCACCCATTCACTCAGG 59.078 55.000 0.00 0.00 0.00 3.86
308 309 1.561076 CAGATCCCACCCATTCACTCA 59.439 52.381 0.00 0.00 0.00 3.41
309 310 1.839994 TCAGATCCCACCCATTCACTC 59.160 52.381 0.00 0.00 0.00 3.51
310 311 1.971149 TCAGATCCCACCCATTCACT 58.029 50.000 0.00 0.00 0.00 3.41
312 313 3.373001 GGAAATCAGATCCCACCCATTCA 60.373 47.826 0.00 0.00 0.00 2.57
313 314 3.117360 AGGAAATCAGATCCCACCCATTC 60.117 47.826 4.99 0.00 37.71 2.67
314 315 2.861317 AGGAAATCAGATCCCACCCATT 59.139 45.455 4.99 0.00 37.71 3.16
315 316 2.444766 GAGGAAATCAGATCCCACCCAT 59.555 50.000 4.99 0.00 37.71 4.00
316 317 1.846439 GAGGAAATCAGATCCCACCCA 59.154 52.381 4.99 0.00 37.71 4.51
318 319 3.393941 AGATGAGGAAATCAGATCCCACC 59.606 47.826 4.99 0.00 42.53 4.61
319 320 4.504689 GGAGATGAGGAAATCAGATCCCAC 60.505 50.000 4.99 0.18 42.53 4.61
320 321 3.649981 GGAGATGAGGAAATCAGATCCCA 59.350 47.826 4.99 0.00 42.53 4.37
323 324 5.549742 ACAGGAGATGAGGAAATCAGATC 57.450 43.478 0.00 0.00 42.53 2.75
324 325 6.041865 CAGTACAGGAGATGAGGAAATCAGAT 59.958 42.308 0.00 0.00 42.53 2.90
326 327 5.128499 ACAGTACAGGAGATGAGGAAATCAG 59.872 44.000 0.00 0.00 42.53 2.90
327 328 5.026121 ACAGTACAGGAGATGAGGAAATCA 58.974 41.667 0.00 0.00 43.70 2.57
329 330 6.613271 ACATACAGTACAGGAGATGAGGAAAT 59.387 38.462 0.00 0.00 0.00 2.17
330 331 5.958380 ACATACAGTACAGGAGATGAGGAAA 59.042 40.000 0.00 0.00 0.00 3.13
331 332 5.519808 ACATACAGTACAGGAGATGAGGAA 58.480 41.667 0.00 0.00 0.00 3.36
345 346 5.105513 CCCACTCATGTGTGTACATACAGTA 60.106 44.000 26.36 17.10 45.53 2.74
346 347 4.322725 CCCACTCATGTGTGTACATACAGT 60.323 45.833 26.36 17.72 45.53 3.55
348 349 3.835395 TCCCACTCATGTGTGTACATACA 59.165 43.478 25.07 25.07 45.53 2.29
349 350 4.465632 TCCCACTCATGTGTGTACATAC 57.534 45.455 22.58 15.23 45.53 2.39
350 351 5.692115 ATTCCCACTCATGTGTGTACATA 57.308 39.130 22.58 0.00 45.53 2.29
352 353 4.530553 AGTATTCCCACTCATGTGTGTACA 59.469 41.667 22.58 9.17 42.34 2.90
354 355 4.622933 GCAGTATTCCCACTCATGTGTGTA 60.623 45.833 22.58 10.60 42.34 2.90
355 356 3.869912 GCAGTATTCCCACTCATGTGTGT 60.870 47.826 22.58 9.78 42.34 3.72
356 357 2.679837 GCAGTATTCCCACTCATGTGTG 59.320 50.000 18.79 18.79 42.34 3.82
357 358 2.356125 GGCAGTATTCCCACTCATGTGT 60.356 50.000 0.00 0.00 42.34 3.72
358 359 2.092753 AGGCAGTATTCCCACTCATGTG 60.093 50.000 0.00 0.00 43.45 3.21
359 360 2.171448 GAGGCAGTATTCCCACTCATGT 59.829 50.000 0.00 0.00 0.00 3.21
360 361 2.486191 GGAGGCAGTATTCCCACTCATG 60.486 54.545 0.00 0.00 0.00 3.07
361 362 1.771255 GGAGGCAGTATTCCCACTCAT 59.229 52.381 0.00 0.00 0.00 2.90
362 363 1.204146 GGAGGCAGTATTCCCACTCA 58.796 55.000 0.00 0.00 0.00 3.41
363 364 1.204146 TGGAGGCAGTATTCCCACTC 58.796 55.000 0.00 0.00 32.29 3.51
364 365 1.668826 TTGGAGGCAGTATTCCCACT 58.331 50.000 0.00 0.00 32.29 4.00
366 367 1.340991 GCTTTGGAGGCAGTATTCCCA 60.341 52.381 0.00 0.00 32.29 4.37
369 370 2.019984 CCAGCTTTGGAGGCAGTATTC 58.980 52.381 0.00 0.00 0.00 1.75
370 371 2.134789 CCAGCTTTGGAGGCAGTATT 57.865 50.000 0.00 0.00 0.00 1.89
371 372 3.890527 CCAGCTTTGGAGGCAGTAT 57.109 52.632 0.00 0.00 0.00 2.12
376 377 2.776670 GCTTTGCCAGCTTTGGAGGC 62.777 60.000 5.08 5.08 46.27 4.70
377 378 1.291272 GCTTTGCCAGCTTTGGAGG 59.709 57.895 0.00 0.00 46.27 4.30
378 379 4.981415 GCTTTGCCAGCTTTGGAG 57.019 55.556 0.00 0.00 46.27 3.86
386 387 1.327156 CGGTTTTTGTTGCTTTGCCAG 59.673 47.619 0.00 0.00 0.00 4.85
387 388 1.066858 TCGGTTTTTGTTGCTTTGCCA 60.067 42.857 0.00 0.00 0.00 4.92
389 390 2.607180 ACATCGGTTTTTGTTGCTTTGC 59.393 40.909 0.00 0.00 0.00 3.68
390 391 3.862267 TGACATCGGTTTTTGTTGCTTTG 59.138 39.130 0.00 0.00 0.00 2.77
391 392 3.862845 GTGACATCGGTTTTTGTTGCTTT 59.137 39.130 0.00 0.00 0.00 3.51
392 393 3.443976 GTGACATCGGTTTTTGTTGCTT 58.556 40.909 0.00 0.00 0.00 3.91
396 397 3.283751 TCAGGTGACATCGGTTTTTGTT 58.716 40.909 0.00 0.00 0.00 2.83
397 398 2.925724 TCAGGTGACATCGGTTTTTGT 58.074 42.857 0.00 0.00 0.00 2.83
399 400 3.242936 CGTTTCAGGTGACATCGGTTTTT 60.243 43.478 0.00 0.00 0.00 1.94
400 401 2.289547 CGTTTCAGGTGACATCGGTTTT 59.710 45.455 0.00 0.00 0.00 2.43
401 402 1.871039 CGTTTCAGGTGACATCGGTTT 59.129 47.619 0.00 0.00 0.00 3.27
402 403 1.508632 CGTTTCAGGTGACATCGGTT 58.491 50.000 0.00 0.00 0.00 4.44
403 404 0.320421 CCGTTTCAGGTGACATCGGT 60.320 55.000 7.89 0.00 31.81 4.69
406 407 1.068474 CGTCCGTTTCAGGTGACATC 58.932 55.000 0.00 0.00 0.00 3.06
407 408 0.949105 GCGTCCGTTTCAGGTGACAT 60.949 55.000 0.00 0.00 0.00 3.06
408 409 1.593209 GCGTCCGTTTCAGGTGACA 60.593 57.895 0.00 0.00 0.00 3.58
409 410 0.949105 ATGCGTCCGTTTCAGGTGAC 60.949 55.000 0.00 0.00 0.00 3.67
410 411 0.669318 GATGCGTCCGTTTCAGGTGA 60.669 55.000 0.00 0.00 0.00 4.02
411 412 1.787847 GATGCGTCCGTTTCAGGTG 59.212 57.895 0.00 0.00 0.00 4.00
412 413 1.736645 CGATGCGTCCGTTTCAGGT 60.737 57.895 0.00 0.00 0.00 4.00
413 414 1.011968 TTCGATGCGTCCGTTTCAGG 61.012 55.000 0.00 0.00 0.00 3.86
414 415 0.999406 ATTCGATGCGTCCGTTTCAG 59.001 50.000 0.00 0.00 0.00 3.02
415 416 1.921887 GTATTCGATGCGTCCGTTTCA 59.078 47.619 0.00 0.00 0.00 2.69
416 417 2.034842 CAGTATTCGATGCGTCCGTTTC 60.035 50.000 0.00 0.00 0.00 2.78
417 418 1.924524 CAGTATTCGATGCGTCCGTTT 59.075 47.619 0.00 0.00 0.00 3.60
418 419 1.556564 CAGTATTCGATGCGTCCGTT 58.443 50.000 0.00 0.00 0.00 4.44
421 422 0.249489 AGGCAGTATTCGATGCGTCC 60.249 55.000 0.00 0.00 43.49 4.79
423 424 1.665679 CAAAGGCAGTATTCGATGCGT 59.334 47.619 2.85 0.64 43.49 5.24
425 426 1.268743 GGCAAAGGCAGTATTCGATGC 60.269 52.381 0.00 0.00 43.71 3.91
426 427 2.032550 CAGGCAAAGGCAGTATTCGATG 59.967 50.000 0.00 0.00 43.71 3.84
427 428 2.292267 CAGGCAAAGGCAGTATTCGAT 58.708 47.619 0.00 0.00 43.71 3.59
428 429 1.737838 CAGGCAAAGGCAGTATTCGA 58.262 50.000 0.00 0.00 43.71 3.71
429 430 0.099436 GCAGGCAAAGGCAGTATTCG 59.901 55.000 0.00 0.00 43.71 3.34
430 431 1.176527 TGCAGGCAAAGGCAGTATTC 58.823 50.000 0.00 0.00 43.71 1.75
432 433 1.108776 CATGCAGGCAAAGGCAGTAT 58.891 50.000 0.00 0.00 44.24 2.12
433 434 0.251297 ACATGCAGGCAAAGGCAGTA 60.251 50.000 0.00 0.00 44.24 2.74
435 436 0.171903 GTACATGCAGGCAAAGGCAG 59.828 55.000 0.00 0.00 44.24 4.85
436 437 1.585267 CGTACATGCAGGCAAAGGCA 61.585 55.000 0.00 0.00 45.23 4.75
437 438 1.137404 CGTACATGCAGGCAAAGGC 59.863 57.895 0.00 0.00 40.13 4.35
438 439 1.396996 GTACGTACATGCAGGCAAAGG 59.603 52.381 20.67 0.00 0.00 3.11
440 441 1.072391 CGTACGTACATGCAGGCAAA 58.928 50.000 24.50 0.00 0.00 3.68
441 442 0.038067 ACGTACGTACATGCAGGCAA 60.038 50.000 21.41 0.00 0.00 4.52
442 443 0.734597 CACGTACGTACATGCAGGCA 60.735 55.000 22.34 0.00 0.00 4.75
443 444 0.734942 ACACGTACGTACATGCAGGC 60.735 55.000 22.34 0.00 0.00 4.85
444 445 1.652124 GAACACGTACGTACATGCAGG 59.348 52.381 22.34 8.59 0.00 4.85
445 446 2.321263 TGAACACGTACGTACATGCAG 58.679 47.619 22.34 9.38 0.00 4.41
446 447 2.418983 TGAACACGTACGTACATGCA 57.581 45.000 22.34 11.63 0.00 3.96
448 449 2.528688 CCGATGAACACGTACGTACATG 59.471 50.000 26.99 22.00 0.00 3.21
449 450 2.162208 ACCGATGAACACGTACGTACAT 59.838 45.455 22.34 23.55 0.00 2.29
450 451 1.535028 ACCGATGAACACGTACGTACA 59.465 47.619 22.34 20.20 0.00 2.90
451 452 1.906966 CACCGATGAACACGTACGTAC 59.093 52.381 22.34 15.90 0.00 3.67
452 453 1.728825 GCACCGATGAACACGTACGTA 60.729 52.381 22.34 5.72 0.00 3.57
453 454 1.005294 GCACCGATGAACACGTACGT 61.005 55.000 16.72 16.72 0.00 3.57
454 455 1.004785 TGCACCGATGAACACGTACG 61.005 55.000 15.01 15.01 0.00 3.67
456 457 0.389296 CCTGCACCGATGAACACGTA 60.389 55.000 0.00 0.00 0.00 3.57
462 463 1.451927 GATGGCCTGCACCGATGAA 60.452 57.895 3.32 0.00 0.00 2.57
463 464 2.190313 GATGGCCTGCACCGATGA 59.810 61.111 3.32 0.00 0.00 2.92
464 465 3.274586 CGATGGCCTGCACCGATG 61.275 66.667 3.32 0.00 0.00 3.84
468 469 2.433231 TTTTTGCGATGGCCTGCACC 62.433 55.000 15.87 0.00 41.57 5.01
469 470 1.006337 TTTTTGCGATGGCCTGCAC 60.006 52.632 15.87 0.00 41.57 4.57
470 471 3.452826 TTTTTGCGATGGCCTGCA 58.547 50.000 12.86 12.86 39.81 4.41
486 487 4.359706 GTGCACCGATGAACTTTTCTTTT 58.640 39.130 5.22 0.00 30.62 2.27
487 488 3.548014 CGTGCACCGATGAACTTTTCTTT 60.548 43.478 12.15 0.00 39.56 2.52
489 490 1.531149 CGTGCACCGATGAACTTTTCT 59.469 47.619 12.15 0.00 39.56 2.52
490 491 1.950472 CGTGCACCGATGAACTTTTC 58.050 50.000 12.15 0.00 39.56 2.29
491 492 0.040425 GCGTGCACCGATGAACTTTT 60.040 50.000 12.15 0.00 39.56 2.27
492 493 1.574428 GCGTGCACCGATGAACTTT 59.426 52.632 12.15 0.00 39.56 2.66
493 494 2.325082 GGCGTGCACCGATGAACTT 61.325 57.895 12.15 0.00 39.56 2.66
494 495 2.742372 GGCGTGCACCGATGAACT 60.742 61.111 12.15 0.00 39.56 3.01
495 496 3.027170 CTGGCGTGCACCGATGAAC 62.027 63.158 12.15 0.00 39.56 3.18
500 501 2.557059 CTATGTCTGGCGTGCACCGA 62.557 60.000 12.15 0.43 39.56 4.69
501 502 2.125713 TATGTCTGGCGTGCACCG 60.126 61.111 12.15 7.80 40.40 4.94
502 503 1.815421 CCTATGTCTGGCGTGCACC 60.815 63.158 12.15 3.87 0.00 5.01
503 504 0.179073 ATCCTATGTCTGGCGTGCAC 60.179 55.000 6.82 6.82 0.00 4.57
504 505 0.541392 AATCCTATGTCTGGCGTGCA 59.459 50.000 0.00 0.00 0.00 4.57
505 506 1.668419 AAATCCTATGTCTGGCGTGC 58.332 50.000 0.00 0.00 0.00 5.34
538 539 4.455533 CCAGTCCATTGATCTCGTGAAAAA 59.544 41.667 0.00 0.00 0.00 1.94
539 540 4.002982 CCAGTCCATTGATCTCGTGAAAA 58.997 43.478 0.00 0.00 0.00 2.29
540 541 3.599343 CCAGTCCATTGATCTCGTGAAA 58.401 45.455 0.00 0.00 0.00 2.69
541 542 2.677902 GCCAGTCCATTGATCTCGTGAA 60.678 50.000 0.00 0.00 0.00 3.18
542 543 1.134699 GCCAGTCCATTGATCTCGTGA 60.135 52.381 0.00 0.00 0.00 4.35
543 544 1.293924 GCCAGTCCATTGATCTCGTG 58.706 55.000 0.00 0.00 0.00 4.35
544 545 0.179000 GGCCAGTCCATTGATCTCGT 59.821 55.000 0.00 0.00 34.01 4.18
545 546 0.178767 TGGCCAGTCCATTGATCTCG 59.821 55.000 0.00 0.00 40.72 4.04
546 547 2.019984 GTTGGCCAGTCCATTGATCTC 58.980 52.381 5.11 0.00 46.04 2.75
547 548 1.679944 CGTTGGCCAGTCCATTGATCT 60.680 52.381 5.11 0.00 46.04 2.75
548 549 0.734889 CGTTGGCCAGTCCATTGATC 59.265 55.000 5.11 0.00 46.04 2.92
549 550 0.038166 ACGTTGGCCAGTCCATTGAT 59.962 50.000 5.11 0.00 46.04 2.57
550 551 0.888736 CACGTTGGCCAGTCCATTGA 60.889 55.000 5.11 0.00 46.04 2.57
551 552 1.580942 CACGTTGGCCAGTCCATTG 59.419 57.895 5.11 0.00 46.04 2.82
552 553 1.603455 CCACGTTGGCCAGTCCATT 60.603 57.895 5.11 0.00 46.04 3.16
554 555 4.263572 CCCACGTTGGCCAGTCCA 62.264 66.667 5.11 0.00 44.85 4.02
556 557 3.948719 TCCCCACGTTGGCCAGTC 61.949 66.667 5.11 2.36 35.79 3.51
557 558 4.265056 GTCCCCACGTTGGCCAGT 62.265 66.667 5.11 0.00 35.79 4.00
558 559 3.491598 AAGTCCCCACGTTGGCCAG 62.492 63.158 5.11 0.00 35.79 4.85
562 563 0.251165 AATCCAAGTCCCCACGTTGG 60.251 55.000 0.00 0.00 41.92 3.77
563 564 0.881118 CAATCCAAGTCCCCACGTTG 59.119 55.000 0.00 0.00 0.00 4.10
564 565 0.251165 CCAATCCAAGTCCCCACGTT 60.251 55.000 0.00 0.00 0.00 3.99
565 566 1.378762 CCAATCCAAGTCCCCACGT 59.621 57.895 0.00 0.00 0.00 4.49
566 567 0.616371 TACCAATCCAAGTCCCCACG 59.384 55.000 0.00 0.00 0.00 4.94
567 568 1.633945 ACTACCAATCCAAGTCCCCAC 59.366 52.381 0.00 0.00 0.00 4.61
568 569 2.053747 ACTACCAATCCAAGTCCCCA 57.946 50.000 0.00 0.00 0.00 4.96
570 571 4.715297 TCTCTAACTACCAATCCAAGTCCC 59.285 45.833 0.00 0.00 0.00 4.46
572 573 7.113658 TCATCTCTAACTACCAATCCAAGTC 57.886 40.000 0.00 0.00 0.00 3.01
575 576 5.163301 GCCTCATCTCTAACTACCAATCCAA 60.163 44.000 0.00 0.00 0.00 3.53
576 577 4.345257 GCCTCATCTCTAACTACCAATCCA 59.655 45.833 0.00 0.00 0.00 3.41
578 579 4.551388 CGCCTCATCTCTAACTACCAATC 58.449 47.826 0.00 0.00 0.00 2.67
579 580 3.322254 CCGCCTCATCTCTAACTACCAAT 59.678 47.826 0.00 0.00 0.00 3.16
580 581 2.693591 CCGCCTCATCTCTAACTACCAA 59.306 50.000 0.00 0.00 0.00 3.67
581 582 2.307768 CCGCCTCATCTCTAACTACCA 58.692 52.381 0.00 0.00 0.00 3.25
582 583 1.614413 CCCGCCTCATCTCTAACTACC 59.386 57.143 0.00 0.00 0.00 3.18
584 585 2.584236 GTCCCGCCTCATCTCTAACTA 58.416 52.381 0.00 0.00 0.00 2.24
585 586 1.404843 GTCCCGCCTCATCTCTAACT 58.595 55.000 0.00 0.00 0.00 2.24
586 587 0.389757 GGTCCCGCCTCATCTCTAAC 59.610 60.000 0.00 0.00 0.00 2.34
587 588 0.759436 GGGTCCCGCCTCATCTCTAA 60.759 60.000 0.00 0.00 37.43 2.10
588 589 1.152525 GGGTCCCGCCTCATCTCTA 60.153 63.158 0.00 0.00 37.43 2.43
590 591 2.764128 TGGGTCCCGCCTCATCTC 60.764 66.667 2.65 0.00 37.43 2.75
592 593 2.595009 GAAGTGGGTCCCGCCTCATC 62.595 65.000 18.36 7.98 33.99 2.92
593 594 2.610859 AAGTGGGTCCCGCCTCAT 60.611 61.111 18.36 0.00 33.99 2.90
594 595 3.319198 GAAGTGGGTCCCGCCTCA 61.319 66.667 18.36 0.00 33.99 3.86
595 596 2.198304 AATGAAGTGGGTCCCGCCTC 62.198 60.000 18.36 15.28 33.99 4.70
597 598 2.046285 CAATGAAGTGGGTCCCGCC 61.046 63.158 18.36 4.27 33.99 6.13
598 599 0.608035 TTCAATGAAGTGGGTCCCGC 60.608 55.000 14.16 14.16 0.00 6.13
599 600 1.904287 TTTCAATGAAGTGGGTCCCG 58.096 50.000 2.65 0.00 0.00 5.14
603 604 3.387699 CCCTTGTTTTCAATGAAGTGGGT 59.612 43.478 0.00 0.00 39.22 4.51
604 605 3.244181 CCCCTTGTTTTCAATGAAGTGGG 60.244 47.826 0.00 5.11 39.22 4.61
605 606 3.244181 CCCCCTTGTTTTCAATGAAGTGG 60.244 47.826 0.00 0.00 39.22 4.00
606 607 3.803368 GCCCCCTTGTTTTCAATGAAGTG 60.803 47.826 0.00 0.00 39.22 3.16
609 610 2.368221 CTGCCCCCTTGTTTTCAATGAA 59.632 45.455 0.00 0.00 39.22 2.57
610 611 1.969923 CTGCCCCCTTGTTTTCAATGA 59.030 47.619 0.00 0.00 39.22 2.57
611 612 1.002315 CCTGCCCCCTTGTTTTCAATG 59.998 52.381 0.00 0.00 39.22 2.82
612 613 1.351076 CCTGCCCCCTTGTTTTCAAT 58.649 50.000 0.00 0.00 39.22 2.57
614 615 0.469144 GACCTGCCCCCTTGTTTTCA 60.469 55.000 0.00 0.00 0.00 2.69
615 616 0.469144 TGACCTGCCCCCTTGTTTTC 60.469 55.000 0.00 0.00 0.00 2.29
616 617 0.469892 CTGACCTGCCCCCTTGTTTT 60.470 55.000 0.00 0.00 0.00 2.43
619 620 2.084930 AACTGACCTGCCCCCTTGT 61.085 57.895 0.00 0.00 0.00 3.16
620 621 1.604593 CAACTGACCTGCCCCCTTG 60.605 63.158 0.00 0.00 0.00 3.61
621 622 2.845345 CCAACTGACCTGCCCCCTT 61.845 63.158 0.00 0.00 0.00 3.95
623 624 3.146828 AACCAACTGACCTGCCCCC 62.147 63.158 0.00 0.00 0.00 5.40
624 625 1.903404 CAACCAACTGACCTGCCCC 60.903 63.158 0.00 0.00 0.00 5.80
625 626 0.467290 TTCAACCAACTGACCTGCCC 60.467 55.000 0.00 0.00 0.00 5.36
626 627 1.398692 TTTCAACCAACTGACCTGCC 58.601 50.000 0.00 0.00 0.00 4.85
627 628 2.687935 TCTTTTCAACCAACTGACCTGC 59.312 45.455 0.00 0.00 0.00 4.85
628 629 4.022849 GGATCTTTTCAACCAACTGACCTG 60.023 45.833 0.00 0.00 0.00 4.00
629 630 4.145052 GGATCTTTTCAACCAACTGACCT 58.855 43.478 0.00 0.00 0.00 3.85
630 631 3.255888 GGGATCTTTTCAACCAACTGACC 59.744 47.826 0.00 0.00 0.00 4.02
632 633 3.146066 CGGGATCTTTTCAACCAACTGA 58.854 45.455 0.00 0.00 0.00 3.41
633 634 2.884639 ACGGGATCTTTTCAACCAACTG 59.115 45.455 0.00 0.00 0.00 3.16
634 635 2.884639 CACGGGATCTTTTCAACCAACT 59.115 45.455 0.00 0.00 0.00 3.16
646 647 3.838903 ACCTTTACTCTTTCACGGGATCT 59.161 43.478 0.00 0.00 0.00 2.75
813 820 1.202177 CCGCATGCAATTCAGGTGTAC 60.202 52.381 19.57 0.00 35.40 2.90
817 827 2.713967 GGCCGCATGCAATTCAGGT 61.714 57.895 19.57 0.00 43.89 4.00
859 869 2.788786 GAGTGAAATGTTGGTTGCGTTG 59.211 45.455 0.00 0.00 0.00 4.10
861 871 2.020720 TGAGTGAAATGTTGGTTGCGT 58.979 42.857 0.00 0.00 0.00 5.24
862 872 2.384382 GTGAGTGAAATGTTGGTTGCG 58.616 47.619 0.00 0.00 0.00 4.85
863 873 2.384382 CGTGAGTGAAATGTTGGTTGC 58.616 47.619 0.00 0.00 0.00 4.17
892 902 1.406069 CCTCTGCCGTTGCTGATTACT 60.406 52.381 0.00 0.00 43.40 2.24
893 903 1.009829 CCTCTGCCGTTGCTGATTAC 58.990 55.000 0.00 0.00 43.40 1.89
894 904 0.107703 CCCTCTGCCGTTGCTGATTA 60.108 55.000 0.00 0.00 43.40 1.75
896 906 2.270205 CCCTCTGCCGTTGCTGAT 59.730 61.111 0.00 0.00 43.40 2.90
925 935 6.280643 TCACTCCTGATTATTACCGTGATTG 58.719 40.000 0.00 0.00 0.00 2.67
971 1007 1.829533 GATCCCGGCGGGTGTAGTA 60.830 63.158 41.32 24.12 44.74 1.82
980 1016 2.472232 TTCGATCGATGATCCCGGCG 62.472 60.000 20.18 0.00 35.83 6.46
990 1026 2.900528 GGTCGCCATTTCGATCGAT 58.099 52.632 20.18 1.17 40.84 3.59
991 1027 4.412933 GGTCGCCATTTCGATCGA 57.587 55.556 15.15 15.15 40.84 3.59
1503 2572 3.637273 ACGGCTCCACCTTGTCCC 61.637 66.667 0.00 0.00 35.61 4.46
1527 2596 4.680237 CCACGGACCGCAGCTTCA 62.680 66.667 15.39 0.00 0.00 3.02
1648 2717 1.154073 GTCCGTGTACTGGTCGCTC 60.154 63.158 0.00 0.00 0.00 5.03
1908 3068 2.919856 AGCAGCGACTCCACACCT 60.920 61.111 0.00 0.00 0.00 4.00
2107 3267 3.164269 CCTCATCACCCTCCCCCG 61.164 72.222 0.00 0.00 0.00 5.73
2202 3362 0.038159 GAGACGGCAGCTAGTTGTGT 60.038 55.000 8.48 7.31 0.00 3.72
2295 3472 5.986741 ACGACACAAACATAAGTCACATACA 59.013 36.000 0.00 0.00 0.00 2.29
2305 3482 3.874543 AGCACAGAACGACACAAACATAA 59.125 39.130 0.00 0.00 0.00 1.90
2341 3525 3.380320 TCACATATACTCGGACACCACAG 59.620 47.826 0.00 0.00 0.00 3.66
2348 3532 4.995124 ACACAAGTCACATATACTCGGAC 58.005 43.478 0.00 0.00 0.00 4.79
2351 3535 5.348724 AGCAAACACAAGTCACATATACTCG 59.651 40.000 0.00 0.00 0.00 4.18
2356 3542 4.065088 ACGAGCAAACACAAGTCACATAT 58.935 39.130 0.00 0.00 0.00 1.78
2365 3551 3.378742 ACAAACCATACGAGCAAACACAA 59.621 39.130 0.00 0.00 0.00 3.33
2367 3553 3.619233 ACAAACCATACGAGCAAACAC 57.381 42.857 0.00 0.00 0.00 3.32
2385 3571 3.083293 GACCGGCCCAAGTTTATTAACA 58.917 45.455 0.00 0.00 36.70 2.41
2392 3578 4.572571 TGCGACCGGCCCAAGTTT 62.573 61.111 0.00 0.00 42.61 2.66
2408 3594 3.713205 ATGCTCTGAGGCTCGCGTG 62.713 63.158 10.42 4.44 0.00 5.34
2409 3595 3.423162 GATGCTCTGAGGCTCGCGT 62.423 63.158 10.42 8.64 0.00 6.01
2410 3596 2.657944 GATGCTCTGAGGCTCGCG 60.658 66.667 10.42 0.00 0.00 5.87
2411 3597 1.300080 GAGATGCTCTGAGGCTCGC 60.300 63.158 10.42 7.97 0.00 5.03
2412 3598 1.363443 GGAGATGCTCTGAGGCTCG 59.637 63.158 10.42 5.04 0.00 5.03
2413 3599 0.829333 TTGGAGATGCTCTGAGGCTC 59.171 55.000 7.79 7.79 0.00 4.70
2414 3600 0.540923 GTTGGAGATGCTCTGAGGCT 59.459 55.000 6.83 0.00 0.00 4.58
2415 3601 0.463474 GGTTGGAGATGCTCTGAGGC 60.463 60.000 6.83 0.00 0.00 4.70
2416 3602 0.179089 CGGTTGGAGATGCTCTGAGG 60.179 60.000 6.83 0.00 0.00 3.86
2432 3618 2.113139 CCTTGTTGGAGGTGCGGT 59.887 61.111 0.00 0.00 38.35 5.68
2437 3623 3.590574 GGGGGCCTTGTTGGAGGT 61.591 66.667 0.84 0.00 39.11 3.85
2503 3690 1.304879 CGAAAAATGGGCCCCTGGA 60.305 57.895 22.27 0.00 0.00 3.86
2828 4067 2.765969 CTGGGGTGGCACTCCAAT 59.234 61.111 36.88 0.00 45.53 3.16
3020 4321 3.379445 GAACCTCCAGCCCGTCGA 61.379 66.667 0.00 0.00 0.00 4.20
3035 4336 1.304381 GCACTCCCCCATTGCTGAA 60.304 57.895 0.00 0.00 33.26 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.