Multiple sequence alignment - TraesCS4B01G294800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G294800 chr4B 100.000 3433 0 0 1 3433 580525738 580529170 0.000000e+00 6340.0
1 TraesCS4B01G294800 chr4B 81.027 1402 217 21 974 2346 580385018 580386399 0.000000e+00 1070.0
2 TraesCS4B01G294800 chr4D 90.499 2347 153 36 834 3132 464238052 464240376 0.000000e+00 3035.0
3 TraesCS4B01G294800 chr4D 81.424 1545 228 37 838 2346 464234760 464236281 0.000000e+00 1208.0
4 TraesCS4B01G294800 chr4D 86.834 676 74 10 1 666 84237014 84236344 0.000000e+00 741.0
5 TraesCS4B01G294800 chr4D 85.312 320 35 8 355 665 94417905 94418221 1.540000e-83 320.0
6 TraesCS4B01G294800 chr4A 88.999 1718 126 32 839 2521 5813411 5811722 0.000000e+00 2067.0
7 TraesCS4B01G294800 chr4A 79.913 1613 246 45 779 2349 5816930 5815354 0.000000e+00 1112.0
8 TraesCS4B01G294800 chr4A 79.576 1322 226 23 1063 2360 604659777 604661078 0.000000e+00 905.0
9 TraesCS4B01G294800 chr4A 83.493 939 137 10 1394 2330 604642216 604641294 0.000000e+00 859.0
10 TraesCS4B01G294800 chr4A 85.460 337 41 4 1064 1395 604647895 604647562 9.120000e-91 344.0
11 TraesCS4B01G294800 chr4A 88.060 134 13 3 2513 2646 5811654 5811524 4.590000e-34 156.0
12 TraesCS4B01G294800 chr5D 84.240 1269 173 15 1064 2324 560190256 560191505 0.000000e+00 1210.0
13 TraesCS4B01G294800 chr5D 87.699 691 58 9 1 668 277617194 277616508 0.000000e+00 780.0
14 TraesCS4B01G294800 chr5B 83.621 1276 174 21 1064 2324 710502562 710503817 0.000000e+00 1166.0
15 TraesCS4B01G294800 chr5B 84.826 402 47 9 1063 1457 710499111 710498717 3.210000e-105 392.0
16 TraesCS4B01G294800 chr2D 79.559 1541 261 31 834 2348 557479392 557477880 0.000000e+00 1051.0
17 TraesCS4B01G294800 chr2D 87.834 674 71 7 1 670 243146108 243146774 0.000000e+00 780.0
18 TraesCS4B01G294800 chr5A 79.930 1430 243 21 961 2358 458477684 458479101 0.000000e+00 1011.0
19 TraesCS4B01G294800 chr5A 87.370 673 74 8 1 666 170085955 170085287 0.000000e+00 761.0
20 TraesCS4B01G294800 chr3A 87.444 669 69 12 1 666 726487301 726487957 0.000000e+00 756.0
21 TraesCS4B01G294800 chr1A 84.615 676 83 10 1 666 304523189 304523853 0.000000e+00 652.0
22 TraesCS4B01G294800 chr1A 84.366 678 83 11 1 666 304684883 304685549 0.000000e+00 643.0
23 TraesCS4B01G294800 chr2A 83.644 697 81 17 1 670 516224051 516223361 2.910000e-175 625.0
24 TraesCS4B01G294800 chr2A 94.595 37 1 1 3015 3051 165840016 165839981 4.790000e-04 56.5
25 TraesCS4B01G294800 chr1D 92.857 378 27 0 1 378 493699412 493699035 1.800000e-152 549.0
26 TraesCS4B01G294800 chr2B 88.803 259 19 6 411 666 68174977 68175228 3.330000e-80 309.0
27 TraesCS4B01G294800 chr2B 90.244 41 3 1 2951 2990 523259997 523259957 6.000000e-03 52.8
28 TraesCS4B01G294800 chr6A 85.765 281 35 3 391 669 59806890 59806613 3.350000e-75 292.0
29 TraesCS4B01G294800 chr3D 90.909 55 3 1 2951 3003 472689167 472689221 4.750000e-09 73.1
30 TraesCS4B01G294800 chr3D 91.111 45 4 0 2957 3001 11330730 11330686 1.030000e-05 62.1
31 TraesCS4B01G294800 chr7D 92.683 41 2 1 2951 2991 129500705 129500666 1.330000e-04 58.4
32 TraesCS4B01G294800 chr7D 100.000 29 0 0 3018 3046 613776176 613776148 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G294800 chr4B 580525738 580529170 3432 False 6340.000000 6340 100.000000 1 3433 1 chr4B.!!$F2 3432
1 TraesCS4B01G294800 chr4B 580385018 580386399 1381 False 1070.000000 1070 81.027000 974 2346 1 chr4B.!!$F1 1372
2 TraesCS4B01G294800 chr4D 464234760 464240376 5616 False 2121.500000 3035 85.961500 834 3132 2 chr4D.!!$F2 2298
3 TraesCS4B01G294800 chr4D 84236344 84237014 670 True 741.000000 741 86.834000 1 666 1 chr4D.!!$R1 665
4 TraesCS4B01G294800 chr4A 5811524 5816930 5406 True 1111.666667 2067 85.657333 779 2646 3 chr4A.!!$R3 1867
5 TraesCS4B01G294800 chr4A 604659777 604661078 1301 False 905.000000 905 79.576000 1063 2360 1 chr4A.!!$F1 1297
6 TraesCS4B01G294800 chr4A 604641294 604642216 922 True 859.000000 859 83.493000 1394 2330 1 chr4A.!!$R1 936
7 TraesCS4B01G294800 chr5D 560190256 560191505 1249 False 1210.000000 1210 84.240000 1064 2324 1 chr5D.!!$F1 1260
8 TraesCS4B01G294800 chr5D 277616508 277617194 686 True 780.000000 780 87.699000 1 668 1 chr5D.!!$R1 667
9 TraesCS4B01G294800 chr5B 710502562 710503817 1255 False 1166.000000 1166 83.621000 1064 2324 1 chr5B.!!$F1 1260
10 TraesCS4B01G294800 chr2D 557477880 557479392 1512 True 1051.000000 1051 79.559000 834 2348 1 chr2D.!!$R1 1514
11 TraesCS4B01G294800 chr2D 243146108 243146774 666 False 780.000000 780 87.834000 1 670 1 chr2D.!!$F1 669
12 TraesCS4B01G294800 chr5A 458477684 458479101 1417 False 1011.000000 1011 79.930000 961 2358 1 chr5A.!!$F1 1397
13 TraesCS4B01G294800 chr5A 170085287 170085955 668 True 761.000000 761 87.370000 1 666 1 chr5A.!!$R1 665
14 TraesCS4B01G294800 chr3A 726487301 726487957 656 False 756.000000 756 87.444000 1 666 1 chr3A.!!$F1 665
15 TraesCS4B01G294800 chr1A 304523189 304523853 664 False 652.000000 652 84.615000 1 666 1 chr1A.!!$F1 665
16 TraesCS4B01G294800 chr1A 304684883 304685549 666 False 643.000000 643 84.366000 1 666 1 chr1A.!!$F2 665
17 TraesCS4B01G294800 chr2A 516223361 516224051 690 True 625.000000 625 83.644000 1 670 1 chr2A.!!$R2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 809 0.035630 AGATGAACTGCTGGCTGACC 60.036 55.0 6.47 0.00 0.00 4.02 F
836 892 0.390472 GCACACAGGTAGAGTGGAGC 60.390 60.0 0.00 0.00 41.21 4.70 F
1934 2078 0.246635 CCGTCCCTGACAGGTACTTG 59.753 60.0 20.24 2.98 34.60 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1728 0.744874 TGGAGTAGATGCCGTACAGC 59.255 55.0 0.00 0.0 33.80 4.40 R
2030 2174 0.976073 CCTCTTCCTGGAGGGCGTTA 60.976 60.0 5.93 0.0 46.63 3.18 R
3321 7127 0.506506 GCCCGCGTTTCAAAAATGTG 59.493 50.0 4.92 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.530151 TGGCTGCTGGAGGAGGTT 60.530 61.111 0.00 0.00 33.79 3.50
86 87 4.740822 GGAGGTTGCCGGCCACAT 62.741 66.667 29.60 24.69 0.00 3.21
208 215 3.382832 CGCCACCTCGTCCCTTCT 61.383 66.667 0.00 0.00 0.00 2.85
456 505 2.893489 GCAGGAAAGGAAATGAAGTGGT 59.107 45.455 0.00 0.00 0.00 4.16
469 518 2.517402 GTGGTGGTTGGGCGTTCA 60.517 61.111 0.00 0.00 0.00 3.18
470 519 2.517402 TGGTGGTTGGGCGTTCAC 60.517 61.111 0.00 0.00 0.00 3.18
471 520 2.517402 GGTGGTTGGGCGTTCACA 60.517 61.111 0.00 0.00 32.29 3.58
472 521 2.122167 GGTGGTTGGGCGTTCACAA 61.122 57.895 0.00 0.00 32.29 3.33
590 643 5.539582 TTTTGTACATATGAACCGTCTGC 57.460 39.130 10.38 0.00 0.00 4.26
633 689 9.125026 CCTTAGACGGTCTAAAAGTTAGGTATA 57.875 37.037 25.84 4.99 38.38 1.47
648 704 9.636789 AAGTTAGGTATATTTACATTTGGACCC 57.363 33.333 0.00 0.00 0.00 4.46
670 726 7.740805 ACCCTCTATTTAAGATGCTCTAAAGG 58.259 38.462 0.00 0.00 32.41 3.11
671 727 7.569111 ACCCTCTATTTAAGATGCTCTAAAGGA 59.431 37.037 0.00 0.00 32.41 3.36
672 728 7.875554 CCCTCTATTTAAGATGCTCTAAAGGAC 59.124 40.741 0.00 0.00 32.41 3.85
673 729 7.875554 CCTCTATTTAAGATGCTCTAAAGGACC 59.124 40.741 0.00 0.00 32.41 4.46
674 730 7.736893 TCTATTTAAGATGCTCTAAAGGACCC 58.263 38.462 0.00 0.00 0.00 4.46
675 731 5.772393 TTTAAGATGCTCTAAAGGACCCA 57.228 39.130 0.00 0.00 0.00 4.51
676 732 5.772393 TTAAGATGCTCTAAAGGACCCAA 57.228 39.130 0.00 0.00 0.00 4.12
677 733 4.657814 AAGATGCTCTAAAGGACCCAAA 57.342 40.909 0.00 0.00 0.00 3.28
678 734 4.657814 AGATGCTCTAAAGGACCCAAAA 57.342 40.909 0.00 0.00 0.00 2.44
679 735 4.593956 AGATGCTCTAAAGGACCCAAAAG 58.406 43.478 0.00 0.00 0.00 2.27
680 736 4.289672 AGATGCTCTAAAGGACCCAAAAGA 59.710 41.667 0.00 0.00 0.00 2.52
681 737 4.021102 TGCTCTAAAGGACCCAAAAGAG 57.979 45.455 6.44 6.44 34.84 2.85
682 738 3.394606 TGCTCTAAAGGACCCAAAAGAGT 59.605 43.478 10.69 0.00 34.35 3.24
683 739 4.141251 TGCTCTAAAGGACCCAAAAGAGTT 60.141 41.667 10.69 0.00 34.35 3.01
684 740 4.827835 GCTCTAAAGGACCCAAAAGAGTTT 59.172 41.667 10.69 0.00 34.35 2.66
685 741 6.002082 GCTCTAAAGGACCCAAAAGAGTTTA 58.998 40.000 10.69 0.00 34.35 2.01
686 742 6.659668 GCTCTAAAGGACCCAAAAGAGTTTAT 59.340 38.462 10.69 0.00 34.35 1.40
687 743 7.827729 GCTCTAAAGGACCCAAAAGAGTTTATA 59.172 37.037 10.69 0.00 34.35 0.98
688 744 9.907229 CTCTAAAGGACCCAAAAGAGTTTATAT 57.093 33.333 0.00 0.00 0.00 0.86
689 745 9.901172 TCTAAAGGACCCAAAAGAGTTTATATC 57.099 33.333 0.00 0.00 0.00 1.63
690 746 9.681062 CTAAAGGACCCAAAAGAGTTTATATCA 57.319 33.333 0.00 0.00 0.00 2.15
691 747 8.581253 AAAGGACCCAAAAGAGTTTATATCAG 57.419 34.615 0.00 0.00 0.00 2.90
692 748 6.122964 AGGACCCAAAAGAGTTTATATCAGC 58.877 40.000 0.00 0.00 0.00 4.26
693 749 5.299531 GGACCCAAAAGAGTTTATATCAGCC 59.700 44.000 0.00 0.00 0.00 4.85
694 750 5.826643 ACCCAAAAGAGTTTATATCAGCCA 58.173 37.500 0.00 0.00 0.00 4.75
695 751 5.888161 ACCCAAAAGAGTTTATATCAGCCAG 59.112 40.000 0.00 0.00 0.00 4.85
696 752 5.221126 CCCAAAAGAGTTTATATCAGCCAGC 60.221 44.000 0.00 0.00 0.00 4.85
697 753 5.357878 CCAAAAGAGTTTATATCAGCCAGCA 59.642 40.000 0.00 0.00 0.00 4.41
698 754 6.459298 CCAAAAGAGTTTATATCAGCCAGCAG 60.459 42.308 0.00 0.00 0.00 4.24
699 755 5.365021 AAGAGTTTATATCAGCCAGCAGT 57.635 39.130 0.00 0.00 0.00 4.40
700 756 6.485830 AAGAGTTTATATCAGCCAGCAGTA 57.514 37.500 0.00 0.00 0.00 2.74
701 757 5.848406 AGAGTTTATATCAGCCAGCAGTAC 58.152 41.667 0.00 0.00 0.00 2.73
702 758 5.363868 AGAGTTTATATCAGCCAGCAGTACA 59.636 40.000 0.00 0.00 0.00 2.90
703 759 6.042552 AGAGTTTATATCAGCCAGCAGTACAT 59.957 38.462 0.00 0.00 0.00 2.29
704 760 5.994054 AGTTTATATCAGCCAGCAGTACATG 59.006 40.000 0.00 0.00 0.00 3.21
705 761 5.806654 TTATATCAGCCAGCAGTACATGA 57.193 39.130 0.00 0.00 0.00 3.07
706 762 4.694760 ATATCAGCCAGCAGTACATGAA 57.305 40.909 0.00 0.00 0.00 2.57
707 763 2.099141 TCAGCCAGCAGTACATGAAC 57.901 50.000 0.00 0.00 0.00 3.18
708 764 1.347378 TCAGCCAGCAGTACATGAACA 59.653 47.619 0.00 0.00 0.00 3.18
709 765 1.736126 CAGCCAGCAGTACATGAACAG 59.264 52.381 0.00 0.00 0.00 3.16
710 766 1.625315 AGCCAGCAGTACATGAACAGA 59.375 47.619 0.00 0.00 0.00 3.41
711 767 2.038952 AGCCAGCAGTACATGAACAGAA 59.961 45.455 0.00 0.00 0.00 3.02
712 768 2.417933 GCCAGCAGTACATGAACAGAAG 59.582 50.000 0.00 0.00 0.00 2.85
713 769 3.668447 CCAGCAGTACATGAACAGAAGT 58.332 45.455 0.00 0.00 0.00 3.01
714 770 3.681897 CCAGCAGTACATGAACAGAAGTC 59.318 47.826 0.00 0.00 0.00 3.01
715 771 3.366121 CAGCAGTACATGAACAGAAGTCG 59.634 47.826 0.00 0.00 0.00 4.18
716 772 2.668457 GCAGTACATGAACAGAAGTCGG 59.332 50.000 0.00 0.00 0.00 4.79
717 773 3.254060 CAGTACATGAACAGAAGTCGGG 58.746 50.000 0.00 0.00 0.00 5.14
718 774 2.897969 AGTACATGAACAGAAGTCGGGT 59.102 45.455 0.00 0.00 0.00 5.28
719 775 2.457366 ACATGAACAGAAGTCGGGTC 57.543 50.000 0.00 0.00 0.00 4.46
720 776 1.002087 ACATGAACAGAAGTCGGGTCC 59.998 52.381 0.00 0.00 0.00 4.46
721 777 1.276421 CATGAACAGAAGTCGGGTCCT 59.724 52.381 0.00 0.00 0.00 3.85
722 778 1.420430 TGAACAGAAGTCGGGTCCTT 58.580 50.000 0.00 0.00 0.00 3.36
723 779 1.766496 TGAACAGAAGTCGGGTCCTTT 59.234 47.619 0.00 0.00 0.00 3.11
724 780 2.171870 TGAACAGAAGTCGGGTCCTTTT 59.828 45.455 0.00 0.00 0.00 2.27
725 781 2.545537 ACAGAAGTCGGGTCCTTTTC 57.454 50.000 0.00 0.00 0.00 2.29
726 782 1.766496 ACAGAAGTCGGGTCCTTTTCA 59.234 47.619 0.00 0.00 0.00 2.69
727 783 2.143925 CAGAAGTCGGGTCCTTTTCAC 58.856 52.381 0.00 0.00 0.00 3.18
728 784 1.766496 AGAAGTCGGGTCCTTTTCACA 59.234 47.619 0.00 0.00 0.00 3.58
729 785 1.871676 GAAGTCGGGTCCTTTTCACAC 59.128 52.381 0.00 0.00 0.00 3.82
730 786 0.834612 AGTCGGGTCCTTTTCACACA 59.165 50.000 0.00 0.00 0.00 3.72
731 787 1.202651 AGTCGGGTCCTTTTCACACAG 60.203 52.381 0.00 0.00 0.00 3.66
732 788 0.834612 TCGGGTCCTTTTCACACAGT 59.165 50.000 0.00 0.00 0.00 3.55
733 789 0.944386 CGGGTCCTTTTCACACAGTG 59.056 55.000 0.00 0.00 34.45 3.66
734 790 1.474320 CGGGTCCTTTTCACACAGTGA 60.474 52.381 7.81 0.00 41.09 3.41
735 791 2.222027 GGGTCCTTTTCACACAGTGAG 58.778 52.381 7.81 0.00 43.69 3.51
736 792 2.158813 GGGTCCTTTTCACACAGTGAGA 60.159 50.000 7.81 1.13 43.69 3.27
737 793 3.496870 GGGTCCTTTTCACACAGTGAGAT 60.497 47.826 7.81 0.00 43.69 2.75
738 794 3.499918 GGTCCTTTTCACACAGTGAGATG 59.500 47.826 7.81 0.00 43.69 2.90
739 795 4.380531 GTCCTTTTCACACAGTGAGATGA 58.619 43.478 7.81 0.00 43.69 2.92
740 796 4.816385 GTCCTTTTCACACAGTGAGATGAA 59.184 41.667 7.81 4.21 43.69 2.57
741 797 4.816385 TCCTTTTCACACAGTGAGATGAAC 59.184 41.667 7.81 0.00 43.69 3.18
742 798 4.818546 CCTTTTCACACAGTGAGATGAACT 59.181 41.667 7.81 0.00 43.69 3.01
748 804 1.085091 CAGTGAGATGAACTGCTGGC 58.915 55.000 0.00 0.00 38.72 4.85
749 805 0.982704 AGTGAGATGAACTGCTGGCT 59.017 50.000 0.00 0.00 0.00 4.75
750 806 1.085091 GTGAGATGAACTGCTGGCTG 58.915 55.000 0.00 0.00 0.00 4.85
751 807 0.978907 TGAGATGAACTGCTGGCTGA 59.021 50.000 6.47 0.00 0.00 4.26
752 808 1.338484 TGAGATGAACTGCTGGCTGAC 60.338 52.381 6.47 1.74 0.00 3.51
753 809 0.035630 AGATGAACTGCTGGCTGACC 60.036 55.000 6.47 0.00 0.00 4.02
754 810 1.364626 GATGAACTGCTGGCTGACCG 61.365 60.000 6.47 0.00 39.70 4.79
755 811 2.031163 GAACTGCTGGCTGACCGT 59.969 61.111 6.47 0.00 39.70 4.83
756 812 2.281070 AACTGCTGGCTGACCGTG 60.281 61.111 6.47 0.00 39.70 4.94
757 813 2.715532 GAACTGCTGGCTGACCGTGA 62.716 60.000 6.47 0.00 39.70 4.35
758 814 2.116983 AACTGCTGGCTGACCGTGAT 62.117 55.000 6.47 0.00 39.70 3.06
759 815 2.046988 TGCTGGCTGACCGTGATG 60.047 61.111 0.00 0.00 39.70 3.07
760 816 2.821366 GCTGGCTGACCGTGATGG 60.821 66.667 0.00 0.00 46.41 3.51
770 826 3.065575 CCGTGATGGTTGCTACCTC 57.934 57.895 18.31 12.92 45.27 3.85
771 827 0.537188 CCGTGATGGTTGCTACCTCT 59.463 55.000 18.31 5.83 45.27 3.69
772 828 1.066143 CCGTGATGGTTGCTACCTCTT 60.066 52.381 18.31 3.50 45.27 2.85
773 829 2.271800 CGTGATGGTTGCTACCTCTTC 58.728 52.381 18.31 12.33 45.27 2.87
774 830 2.353704 CGTGATGGTTGCTACCTCTTCA 60.354 50.000 18.31 14.49 45.27 3.02
775 831 3.679917 CGTGATGGTTGCTACCTCTTCAT 60.680 47.826 18.31 2.89 45.27 2.57
776 832 3.624861 GTGATGGTTGCTACCTCTTCATG 59.375 47.826 18.31 0.00 45.27 3.07
777 833 2.113860 TGGTTGCTACCTCTTCATGC 57.886 50.000 18.31 0.00 45.27 4.06
781 837 1.123077 TGCTACCTCTTCATGCGGAT 58.877 50.000 0.00 0.00 0.00 4.18
793 849 4.657824 GCGGATGCATGCATGGCC 62.658 66.667 36.73 28.76 42.15 5.36
794 850 3.220658 CGGATGCATGCATGGCCA 61.221 61.111 36.73 17.91 36.70 5.36
808 864 2.202479 GCCATTGAAACGAGCGGC 60.202 61.111 0.00 0.00 0.00 6.53
812 868 1.669760 ATTGAAACGAGCGGCCGAA 60.670 52.632 33.48 12.31 0.00 4.30
813 869 1.635663 ATTGAAACGAGCGGCCGAAG 61.636 55.000 33.48 21.12 0.00 3.79
814 870 2.431942 GAAACGAGCGGCCGAAGA 60.432 61.111 33.48 0.00 0.00 2.87
815 871 2.432628 AAACGAGCGGCCGAAGAG 60.433 61.111 33.48 18.76 0.00 2.85
816 872 2.814183 GAAACGAGCGGCCGAAGAGA 62.814 60.000 33.48 0.00 0.00 3.10
817 873 2.820767 AAACGAGCGGCCGAAGAGAG 62.821 60.000 33.48 15.31 0.00 3.20
819 875 4.135153 GAGCGGCCGAAGAGAGCA 62.135 66.667 33.48 0.00 0.00 4.26
820 876 4.443266 AGCGGCCGAAGAGAGCAC 62.443 66.667 33.48 7.54 0.00 4.40
824 880 1.739562 GGCCGAAGAGAGCACACAG 60.740 63.158 0.00 0.00 0.00 3.66
825 881 1.739562 GCCGAAGAGAGCACACAGG 60.740 63.158 0.00 0.00 0.00 4.00
826 882 1.668294 CCGAAGAGAGCACACAGGT 59.332 57.895 0.00 0.00 0.00 4.00
827 883 0.888619 CCGAAGAGAGCACACAGGTA 59.111 55.000 0.00 0.00 0.00 3.08
831 887 2.595750 AGAGAGCACACAGGTAGAGT 57.404 50.000 0.00 0.00 0.00 3.24
832 888 2.166829 AGAGAGCACACAGGTAGAGTG 58.833 52.381 0.00 0.00 41.14 3.51
836 892 0.390472 GCACACAGGTAGAGTGGAGC 60.390 60.000 0.00 0.00 41.21 4.70
850 908 1.040339 TGGAGCACCCAACAAACCAC 61.040 55.000 0.00 0.00 43.29 4.16
864 922 0.464735 AACCACCACGTGCTTTGCTA 60.465 50.000 10.91 0.00 31.34 3.49
865 923 1.164041 ACCACCACGTGCTTTGCTAC 61.164 55.000 10.91 0.00 31.34 3.58
866 924 1.163420 CCACCACGTGCTTTGCTACA 61.163 55.000 10.91 0.00 31.34 2.74
886 946 3.631227 ACACTACCTAATCTACCACGCTC 59.369 47.826 0.00 0.00 0.00 5.03
898 958 1.173444 CCACGCTCCTCGCTACCTAT 61.173 60.000 0.00 0.00 43.23 2.57
910 970 1.813786 GCTACCTATCTACCTCCTGCG 59.186 57.143 0.00 0.00 0.00 5.18
934 994 6.801539 CCAAAACGGCAGTATATATGACAT 57.198 37.500 0.00 0.00 0.00 3.06
938 998 8.435430 CAAAACGGCAGTATATATGACATGTAG 58.565 37.037 0.00 0.00 0.00 2.74
939 999 6.835819 ACGGCAGTATATATGACATGTAGT 57.164 37.500 0.00 0.00 0.00 2.73
940 1000 7.933215 ACGGCAGTATATATGACATGTAGTA 57.067 36.000 0.00 0.00 0.00 1.82
942 1002 6.905609 CGGCAGTATATATGACATGTAGTACG 59.094 42.308 0.00 0.00 0.00 3.67
943 1003 7.413767 CGGCAGTATATATGACATGTAGTACGT 60.414 40.741 0.00 0.00 0.00 3.57
959 1019 8.728337 TGTAGTACGTGTGAAAGATATAGACT 57.272 34.615 0.00 0.00 0.00 3.24
970 1050 5.968528 AAGATATAGACTCATCGACACCC 57.031 43.478 0.00 0.00 0.00 4.61
1061 1151 3.003173 CAGGCCTTCCGACCTCCA 61.003 66.667 0.00 0.00 37.47 3.86
1136 1238 1.076192 TCTTCCTCTACCGCCTCCC 60.076 63.158 0.00 0.00 0.00 4.30
1157 1271 2.970324 CAACCACGACACCACCCG 60.970 66.667 0.00 0.00 0.00 5.28
1164 1278 2.436646 GACACCACCCGCCTCATG 60.437 66.667 0.00 0.00 0.00 3.07
1201 1315 1.614824 CTCTCCAAGGCCCTCACCT 60.615 63.158 0.00 0.00 43.91 4.00
1506 1641 1.298014 CAGCTCCACCCACTTCCTC 59.702 63.158 0.00 0.00 0.00 3.71
1547 1682 3.807538 CGGCGCTGCTGAAATGCT 61.808 61.111 7.64 0.00 37.02 3.79
1557 1692 3.372730 GAAATGCTGCCGCCACCA 61.373 61.111 0.00 0.00 34.43 4.17
1596 1731 4.201122 GCTGATCCCAGGGGGCTG 62.201 72.222 5.33 3.40 43.94 4.85
1677 1812 4.736896 GTGTCCGCTGTCCCCGAC 62.737 72.222 0.00 0.00 0.00 4.79
1682 1817 4.477975 CGCTGTCCCCGACGAGAC 62.478 72.222 10.09 10.09 34.95 3.36
1699 1834 4.180946 CGACGACCAGCTCCTCGG 62.181 72.222 12.90 0.62 34.07 4.63
1746 1881 3.578456 GTGGCATCAAGGACACGG 58.422 61.111 0.00 0.00 37.00 4.94
1752 1887 2.579657 ATCAAGGACACGGTCGCCA 61.580 57.895 0.00 0.00 32.65 5.69
1862 2006 4.574892 CCAAACAGGAACAAAACCAAACT 58.425 39.130 0.00 0.00 41.22 2.66
1865 2009 6.312672 CCAAACAGGAACAAAACCAAACTAAG 59.687 38.462 0.00 0.00 41.22 2.18
1889 2033 4.141551 ACAACCTACTTCCTTTTCTCCGTT 60.142 41.667 0.00 0.00 0.00 4.44
1934 2078 0.246635 CCGTCCCTGACAGGTACTTG 59.753 60.000 20.24 2.98 34.60 3.16
2009 2153 2.603652 GGGAACGGAGGGCCTCTTT 61.604 63.158 31.39 23.85 0.00 2.52
2326 6049 1.305482 CGTTGTTTTGACGATGCGAC 58.695 50.000 0.00 0.00 42.82 5.19
2368 6093 6.591750 AGAACGGGTCTATATAGTTGATGG 57.408 41.667 9.58 0.00 33.56 3.51
2382 6107 1.971149 TGATGGGGAGAGTCCATGTT 58.029 50.000 0.00 0.00 44.34 2.71
2401 6126 1.752683 TCTAGTCCGGCACTCTTCTC 58.247 55.000 9.44 0.00 36.43 2.87
2404 6129 0.894184 AGTCCGGCACTCTTCTCGAA 60.894 55.000 0.00 0.00 0.00 3.71
2405 6130 0.733223 GTCCGGCACTCTTCTCGAAC 60.733 60.000 0.00 0.00 0.00 3.95
2432 6157 1.942657 CACCGCCATCTTCACCAATAG 59.057 52.381 0.00 0.00 0.00 1.73
2474 6199 0.526662 GAGGTGTGAGTAGTCCACCG 59.473 60.000 22.30 0.00 43.54 4.94
2475 6200 1.080025 GGTGTGAGTAGTCCACCGC 60.080 63.158 17.31 4.07 35.56 5.68
2476 6201 1.080025 GTGTGAGTAGTCCACCGCC 60.080 63.158 7.56 0.00 33.80 6.13
2486 6211 1.918293 TCCACCGCCTCTGGACAAT 60.918 57.895 0.00 0.00 32.52 2.71
2491 6216 2.614057 CACCGCCTCTGGACAATAATTC 59.386 50.000 0.00 0.00 0.00 2.17
2492 6217 1.867233 CCGCCTCTGGACAATAATTCG 59.133 52.381 0.00 0.00 0.00 3.34
2552 6353 5.995282 TCGGTGTTTAGATCACATGAACTTT 59.005 36.000 0.00 0.00 37.52 2.66
2649 6450 8.632679 GGTTGTGATTATCATGGTTGTATGAAT 58.367 33.333 0.00 0.00 40.21 2.57
2687 6488 9.158233 TGTATATTGCTATCGGTTTTATTAGCC 57.842 33.333 0.00 0.00 0.00 3.93
2697 6498 6.966021 TCGGTTTTATTAGCCTAATCATTGC 58.034 36.000 0.00 0.00 0.00 3.56
2701 6502 7.256296 GGTTTTATTAGCCTAATCATTGCCCAT 60.256 37.037 0.00 0.00 0.00 4.00
2704 6505 5.534207 TTAGCCTAATCATTGCCCATTTG 57.466 39.130 0.00 0.00 0.00 2.32
2705 6506 2.701951 AGCCTAATCATTGCCCATTTGG 59.298 45.455 0.00 0.00 37.09 3.28
2706 6507 2.699846 GCCTAATCATTGCCCATTTGGA 59.300 45.455 0.00 0.00 37.39 3.53
2707 6508 3.325716 GCCTAATCATTGCCCATTTGGAT 59.674 43.478 0.00 0.00 37.39 3.41
2769 6574 0.173481 TGGAGTAGCGTGCATCAGAC 59.827 55.000 0.00 0.00 0.00 3.51
2775 6580 2.691522 CGTGCATCAGACGAAGCG 59.308 61.111 0.00 0.00 38.72 4.68
2776 6581 2.792290 CGTGCATCAGACGAAGCGG 61.792 63.158 0.00 0.00 38.72 5.52
2777 6582 1.446099 GTGCATCAGACGAAGCGGA 60.446 57.895 0.00 0.00 38.72 5.54
2779 6584 1.446099 GCATCAGACGAAGCGGACA 60.446 57.895 0.00 0.00 0.00 4.02
2786 6591 2.993899 CAGACGAAGCGGACAACTATTT 59.006 45.455 0.00 0.00 0.00 1.40
2813 6618 6.967767 CGAATTACTCTTCGTGACAGTAAGAT 59.032 38.462 1.00 0.00 42.28 2.40
2847 6652 6.437477 TCATAGACGGATTTGCCTCACTATAT 59.563 38.462 0.00 0.00 0.00 0.86
2854 6659 6.929049 CGGATTTGCCTCACTATATAGACAAA 59.071 38.462 16.79 15.72 0.00 2.83
2884 6689 5.767665 TGCATAACTGTGAAAGTGGTTATGT 59.232 36.000 19.06 0.00 46.07 2.29
2913 6718 7.498900 TCGACTTTATGCCATCATGAAAATAGT 59.501 33.333 0.00 0.00 34.22 2.12
2923 6728 9.754382 GCCATCATGAAAATAGTGTGATAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
2949 6755 1.337118 TTGGAAACCTTGGCATCACC 58.663 50.000 0.00 0.00 39.84 4.02
2968 6774 9.369904 GCATCACCTGAACATTTTTAAATACAT 57.630 29.630 0.00 0.00 0.00 2.29
3118 6924 9.932207 ATACACATTGATCATTGTTTTGAATGT 57.068 25.926 18.27 13.88 35.25 2.71
3120 6926 9.932207 ACACATTGATCATTGTTTTGAATGTAT 57.068 25.926 18.27 0.00 35.25 2.29
3239 7045 6.755461 TGTAAACATGTTTAAACAATGCCG 57.245 33.333 28.05 12.69 43.03 5.69
3240 7046 6.504398 TGTAAACATGTTTAAACAATGCCGA 58.496 32.000 28.05 5.39 43.03 5.54
3241 7047 6.978659 TGTAAACATGTTTAAACAATGCCGAA 59.021 30.769 28.05 5.20 43.03 4.30
3242 7048 6.910536 AAACATGTTTAAACAATGCCGAAA 57.089 29.167 23.97 0.00 43.03 3.46
3243 7049 6.910536 AACATGTTTAAACAATGCCGAAAA 57.089 29.167 23.97 0.00 43.03 2.29
3244 7050 6.280537 ACATGTTTAAACAATGCCGAAAAC 57.719 33.333 23.97 0.00 43.03 2.43
3245 7051 5.812642 ACATGTTTAAACAATGCCGAAAACA 59.187 32.000 23.97 0.00 43.03 2.83
3246 7052 6.481644 ACATGTTTAAACAATGCCGAAAACAT 59.518 30.769 23.97 1.98 44.20 2.71
3247 7053 7.653713 ACATGTTTAAACAATGCCGAAAACATA 59.346 29.630 23.97 0.00 42.52 2.29
3248 7054 8.655092 CATGTTTAAACAATGCCGAAAACATAT 58.345 29.630 23.97 0.00 42.52 1.78
3249 7055 8.594881 TGTTTAAACAATGCCGAAAACATATT 57.405 26.923 18.54 0.00 35.67 1.28
3250 7056 9.046296 TGTTTAAACAATGCCGAAAACATATTT 57.954 25.926 18.54 0.00 35.67 1.40
3251 7057 9.312146 GTTTAAACAATGCCGAAAACATATTTG 57.688 29.630 13.51 0.00 0.00 2.32
3252 7058 8.594881 TTAAACAATGCCGAAAACATATTTGT 57.405 26.923 0.00 0.00 37.82 2.83
3254 7060 6.464895 ACAATGCCGAAAACATATTTGTTG 57.535 33.333 2.10 0.00 45.30 3.33
3255 7061 6.219473 ACAATGCCGAAAACATATTTGTTGA 58.781 32.000 2.10 0.00 45.30 3.18
3256 7062 6.703607 ACAATGCCGAAAACATATTTGTTGAA 59.296 30.769 2.10 0.00 45.30 2.69
3257 7063 7.387397 ACAATGCCGAAAACATATTTGTTGAAT 59.613 29.630 2.10 0.00 45.30 2.57
3258 7064 6.702972 TGCCGAAAACATATTTGTTGAATG 57.297 33.333 2.10 0.00 45.30 2.67
3259 7065 5.636965 TGCCGAAAACATATTTGTTGAATGG 59.363 36.000 2.10 4.42 45.30 3.16
3260 7066 5.637387 GCCGAAAACATATTTGTTGAATGGT 59.363 36.000 2.10 0.00 45.30 3.55
3261 7067 6.809196 GCCGAAAACATATTTGTTGAATGGTA 59.191 34.615 2.10 0.00 45.30 3.25
3262 7068 7.009174 GCCGAAAACATATTTGTTGAATGGTAG 59.991 37.037 2.10 0.00 45.30 3.18
3263 7069 8.026607 CCGAAAACATATTTGTTGAATGGTAGT 58.973 33.333 2.10 0.00 45.30 2.73
3264 7070 8.849490 CGAAAACATATTTGTTGAATGGTAGTG 58.151 33.333 2.10 0.00 45.30 2.74
3265 7071 9.906660 GAAAACATATTTGTTGAATGGTAGTGA 57.093 29.630 2.10 0.00 45.30 3.41
3268 7074 9.691362 AACATATTTGTTGAATGGTAGTGAAAC 57.309 29.630 0.33 0.00 44.36 2.78
3269 7075 8.855110 ACATATTTGTTGAATGGTAGTGAAACA 58.145 29.630 0.00 0.00 32.49 2.83
3270 7076 9.859427 CATATTTGTTGAATGGTAGTGAAACAT 57.141 29.630 0.00 0.00 41.43 2.71
3273 7079 8.417780 TTTGTTGAATGGTAGTGAAACATTTG 57.582 30.769 0.00 0.00 41.43 2.32
3274 7080 7.106439 TGTTGAATGGTAGTGAAACATTTGT 57.894 32.000 0.00 0.00 41.43 2.83
3275 7081 7.551585 TGTTGAATGGTAGTGAAACATTTGTT 58.448 30.769 0.00 0.00 41.43 2.83
3276 7082 7.704472 TGTTGAATGGTAGTGAAACATTTGTTC 59.296 33.333 0.00 0.00 41.43 3.18
3277 7083 7.581213 TGAATGGTAGTGAAACATTTGTTCT 57.419 32.000 0.00 0.00 41.43 3.01
3278 7084 8.684386 TGAATGGTAGTGAAACATTTGTTCTA 57.316 30.769 0.00 0.00 41.43 2.10
3279 7085 9.126151 TGAATGGTAGTGAAACATTTGTTCTAA 57.874 29.630 0.00 0.00 41.43 2.10
3280 7086 9.959749 GAATGGTAGTGAAACATTTGTTCTAAA 57.040 29.630 0.00 0.00 41.43 1.85
3281 7087 9.744468 AATGGTAGTGAAACATTTGTTCTAAAC 57.256 29.630 0.00 0.00 41.43 2.01
3282 7088 8.514330 TGGTAGTGAAACATTTGTTCTAAACT 57.486 30.769 0.00 2.06 41.43 2.66
3283 7089 9.616156 TGGTAGTGAAACATTTGTTCTAAACTA 57.384 29.630 0.00 1.24 41.43 2.24
3284 7090 9.874215 GGTAGTGAAACATTTGTTCTAAACTAC 57.126 33.333 18.14 18.14 41.43 2.73
3330 7136 9.784680 TTGGAAATTTTCATGAACACATTTTTG 57.215 25.926 7.89 0.00 0.00 2.44
3331 7137 9.170734 TGGAAATTTTCATGAACACATTTTTGA 57.829 25.926 7.89 0.24 0.00 2.69
3335 7141 9.488124 AATTTTCATGAACACATTTTTGAAACG 57.512 25.926 7.89 0.00 32.84 3.60
3336 7142 5.633996 TCATGAACACATTTTTGAAACGC 57.366 34.783 0.00 0.00 0.00 4.84
3337 7143 4.205996 TCATGAACACATTTTTGAAACGCG 59.794 37.500 3.53 3.53 0.00 6.01
3338 7144 2.854777 TGAACACATTTTTGAAACGCGG 59.145 40.909 12.47 0.00 0.00 6.46
3339 7145 1.846541 ACACATTTTTGAAACGCGGG 58.153 45.000 12.47 0.00 0.00 6.13
3340 7146 0.506506 CACATTTTTGAAACGCGGGC 59.493 50.000 12.47 0.00 0.00 6.13
3341 7147 0.937231 ACATTTTTGAAACGCGGGCG 60.937 50.000 12.47 12.04 46.03 6.13
3342 7148 2.019408 ATTTTTGAAACGCGGGCGC 61.019 52.632 12.47 0.00 44.19 6.53
3343 7149 4.632458 TTTTGAAACGCGGGCGCC 62.632 61.111 21.18 21.18 44.19 6.53
3355 7161 3.933515 GGCGCCAAACCCATATGT 58.066 55.556 24.80 0.00 0.00 2.29
3356 7162 2.198183 GGCGCCAAACCCATATGTT 58.802 52.632 24.80 0.00 0.00 2.71
3357 7163 0.534873 GGCGCCAAACCCATATGTTT 59.465 50.000 24.80 0.00 38.95 2.83
3365 7171 3.333029 AACCCATATGTTTGCTTTGGC 57.667 42.857 1.24 0.00 39.26 4.52
3366 7172 5.041514 CAAACCCATATGTTTGCTTTGGCA 61.042 41.667 1.24 0.00 45.89 4.92
3376 7182 3.379445 CTTTGGCAGGCTGGGCTG 61.379 66.667 17.64 17.96 0.00 4.85
3381 7187 4.431131 GCAGGCTGGGCTGGCTTA 62.431 66.667 22.28 0.00 41.04 3.09
3382 7188 2.356278 CAGGCTGGGCTGGCTTAA 59.644 61.111 15.09 0.00 41.04 1.85
3383 7189 1.751927 CAGGCTGGGCTGGCTTAAG 60.752 63.158 15.09 0.00 41.04 1.85
3384 7190 2.234296 AGGCTGGGCTGGCTTAAGT 61.234 57.895 4.02 0.00 40.00 2.24
3385 7191 1.304464 GGCTGGGCTGGCTTAAGTT 60.304 57.895 4.02 0.00 0.00 2.66
3386 7192 0.900182 GGCTGGGCTGGCTTAAGTTT 60.900 55.000 4.02 0.00 0.00 2.66
3387 7193 0.528017 GCTGGGCTGGCTTAAGTTTC 59.472 55.000 4.02 0.00 0.00 2.78
3388 7194 0.804989 CTGGGCTGGCTTAAGTTTCG 59.195 55.000 4.02 0.00 0.00 3.46
3389 7195 0.608035 TGGGCTGGCTTAAGTTTCGG 60.608 55.000 4.02 1.26 0.00 4.30
3390 7196 1.506718 GGCTGGCTTAAGTTTCGGC 59.493 57.895 4.02 10.37 0.00 5.54
3391 7197 0.960861 GGCTGGCTTAAGTTTCGGCT 60.961 55.000 18.64 0.00 0.00 5.52
3392 7198 0.881796 GCTGGCTTAAGTTTCGGCTT 59.118 50.000 4.02 0.00 0.00 4.35
3393 7199 1.135660 GCTGGCTTAAGTTTCGGCTTC 60.136 52.381 4.02 0.00 0.00 3.86
3394 7200 2.151202 CTGGCTTAAGTTTCGGCTTCA 58.849 47.619 4.02 0.00 0.00 3.02
3395 7201 2.151202 TGGCTTAAGTTTCGGCTTCAG 58.849 47.619 4.02 0.00 0.00 3.02
3396 7202 2.152016 GGCTTAAGTTTCGGCTTCAGT 58.848 47.619 4.02 0.00 0.00 3.41
3397 7203 2.552743 GGCTTAAGTTTCGGCTTCAGTT 59.447 45.455 4.02 0.00 0.00 3.16
3398 7204 3.004419 GGCTTAAGTTTCGGCTTCAGTTT 59.996 43.478 4.02 0.00 0.00 2.66
3399 7205 3.975035 GCTTAAGTTTCGGCTTCAGTTTG 59.025 43.478 4.02 0.00 0.00 2.93
3400 7206 4.497507 GCTTAAGTTTCGGCTTCAGTTTGT 60.498 41.667 4.02 0.00 0.00 2.83
3401 7207 5.570234 TTAAGTTTCGGCTTCAGTTTGTT 57.430 34.783 0.00 0.00 0.00 2.83
3402 7208 4.450082 AAGTTTCGGCTTCAGTTTGTTT 57.550 36.364 0.00 0.00 0.00 2.83
3403 7209 5.570234 AAGTTTCGGCTTCAGTTTGTTTA 57.430 34.783 0.00 0.00 0.00 2.01
3404 7210 5.169836 AGTTTCGGCTTCAGTTTGTTTAG 57.830 39.130 0.00 0.00 0.00 1.85
3405 7211 3.619233 TTCGGCTTCAGTTTGTTTAGC 57.381 42.857 0.00 0.00 0.00 3.09
3406 7212 1.877443 TCGGCTTCAGTTTGTTTAGCC 59.123 47.619 0.00 0.00 46.16 3.93
3407 7213 2.331809 GGCTTCAGTTTGTTTAGCCG 57.668 50.000 0.00 0.00 41.65 5.52
3408 7214 1.877443 GGCTTCAGTTTGTTTAGCCGA 59.123 47.619 0.00 0.00 41.65 5.54
3409 7215 2.095718 GGCTTCAGTTTGTTTAGCCGAG 60.096 50.000 0.00 0.00 41.65 4.63
3410 7216 2.548480 GCTTCAGTTTGTTTAGCCGAGT 59.452 45.455 0.00 0.00 0.00 4.18
3411 7217 3.744426 GCTTCAGTTTGTTTAGCCGAGTA 59.256 43.478 0.00 0.00 0.00 2.59
3412 7218 4.392138 GCTTCAGTTTGTTTAGCCGAGTAT 59.608 41.667 0.00 0.00 0.00 2.12
3413 7219 5.671329 GCTTCAGTTTGTTTAGCCGAGTATG 60.671 44.000 0.00 0.00 0.00 2.39
3414 7220 5.142061 TCAGTTTGTTTAGCCGAGTATGA 57.858 39.130 0.00 0.00 0.00 2.15
3415 7221 5.543714 TCAGTTTGTTTAGCCGAGTATGAA 58.456 37.500 0.00 0.00 0.00 2.57
3416 7222 5.992829 TCAGTTTGTTTAGCCGAGTATGAAA 59.007 36.000 0.00 0.00 0.00 2.69
3417 7223 6.483974 TCAGTTTGTTTAGCCGAGTATGAAAA 59.516 34.615 0.00 0.00 0.00 2.29
3418 7224 6.797033 CAGTTTGTTTAGCCGAGTATGAAAAG 59.203 38.462 0.00 0.00 0.00 2.27
3419 7225 5.873179 TTGTTTAGCCGAGTATGAAAAGG 57.127 39.130 0.00 0.00 0.00 3.11
3420 7226 5.155278 TGTTTAGCCGAGTATGAAAAGGA 57.845 39.130 0.00 0.00 0.00 3.36
3421 7227 5.175859 TGTTTAGCCGAGTATGAAAAGGAG 58.824 41.667 0.00 0.00 0.00 3.69
3422 7228 5.046878 TGTTTAGCCGAGTATGAAAAGGAGA 60.047 40.000 0.00 0.00 0.00 3.71
3423 7229 5.670792 TTAGCCGAGTATGAAAAGGAGAA 57.329 39.130 0.00 0.00 0.00 2.87
3424 7230 4.130286 AGCCGAGTATGAAAAGGAGAAG 57.870 45.455 0.00 0.00 0.00 2.85
3425 7231 3.118592 AGCCGAGTATGAAAAGGAGAAGG 60.119 47.826 0.00 0.00 0.00 3.46
3426 7232 3.198872 CCGAGTATGAAAAGGAGAAGGC 58.801 50.000 0.00 0.00 0.00 4.35
3427 7233 3.198872 CGAGTATGAAAAGGAGAAGGCC 58.801 50.000 0.00 0.00 0.00 5.19
3428 7234 3.546724 GAGTATGAAAAGGAGAAGGCCC 58.453 50.000 0.00 0.00 0.00 5.80
3429 7235 3.193782 AGTATGAAAAGGAGAAGGCCCT 58.806 45.455 0.00 0.00 35.03 5.19
3430 7236 3.593780 AGTATGAAAAGGAGAAGGCCCTT 59.406 43.478 0.00 0.00 45.36 3.95
3431 7237 2.586648 TGAAAAGGAGAAGGCCCTTC 57.413 50.000 15.99 15.99 42.82 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.551131 ATTCCTCAACCTCCCCTGCT 60.551 55.000 0.00 0.00 0.00 4.24
34 35 0.121197 TCCATTCCTCAACCTCCCCT 59.879 55.000 0.00 0.00 0.00 4.79
182 186 3.053896 GAGGTGGCGGAAAACGGG 61.054 66.667 0.00 0.00 44.51 5.28
437 486 3.117131 ACCACCACTTCATTTCCTTTCCT 60.117 43.478 0.00 0.00 0.00 3.36
456 505 3.515611 GTTGTGAACGCCCAACCA 58.484 55.556 0.00 0.00 35.93 3.67
497 546 6.755141 GTGCAAATTTACATCAGAGATGCATT 59.245 34.615 0.00 1.52 42.43 3.56
503 552 3.126858 GCGGTGCAAATTTACATCAGAGA 59.873 43.478 2.67 0.00 0.00 3.10
551 601 0.391228 AAAAATTGAACCGCGGCCTT 59.609 45.000 28.58 13.95 0.00 4.35
572 625 3.123804 CCAGCAGACGGTTCATATGTAC 58.876 50.000 1.90 3.04 0.00 2.90
670 726 5.885912 TGGCTGATATAAACTCTTTTGGGTC 59.114 40.000 0.00 0.00 29.20 4.46
671 727 5.826643 TGGCTGATATAAACTCTTTTGGGT 58.173 37.500 0.00 0.00 32.05 4.51
672 728 5.221126 GCTGGCTGATATAAACTCTTTTGGG 60.221 44.000 0.00 0.00 0.00 4.12
673 729 5.357878 TGCTGGCTGATATAAACTCTTTTGG 59.642 40.000 0.00 0.00 0.00 3.28
674 730 6.094603 ACTGCTGGCTGATATAAACTCTTTTG 59.905 38.462 6.47 0.00 0.00 2.44
675 731 6.183347 ACTGCTGGCTGATATAAACTCTTTT 58.817 36.000 6.47 0.00 0.00 2.27
676 732 5.749462 ACTGCTGGCTGATATAAACTCTTT 58.251 37.500 6.47 0.00 0.00 2.52
677 733 5.365021 ACTGCTGGCTGATATAAACTCTT 57.635 39.130 6.47 0.00 0.00 2.85
678 734 5.363868 TGTACTGCTGGCTGATATAAACTCT 59.636 40.000 6.47 0.00 0.00 3.24
679 735 5.601662 TGTACTGCTGGCTGATATAAACTC 58.398 41.667 6.47 0.00 0.00 3.01
680 736 5.614324 TGTACTGCTGGCTGATATAAACT 57.386 39.130 6.47 0.00 0.00 2.66
681 737 5.991606 TCATGTACTGCTGGCTGATATAAAC 59.008 40.000 6.47 0.00 0.00 2.01
682 738 6.173427 TCATGTACTGCTGGCTGATATAAA 57.827 37.500 6.47 0.00 0.00 1.40
683 739 5.806654 TCATGTACTGCTGGCTGATATAA 57.193 39.130 6.47 0.00 0.00 0.98
684 740 5.070313 TGTTCATGTACTGCTGGCTGATATA 59.930 40.000 4.01 0.00 0.00 0.86
685 741 4.141642 TGTTCATGTACTGCTGGCTGATAT 60.142 41.667 4.01 0.00 0.00 1.63
686 742 3.197549 TGTTCATGTACTGCTGGCTGATA 59.802 43.478 4.01 0.00 0.00 2.15
687 743 2.026915 TGTTCATGTACTGCTGGCTGAT 60.027 45.455 4.01 0.00 0.00 2.90
688 744 1.347378 TGTTCATGTACTGCTGGCTGA 59.653 47.619 4.01 0.00 0.00 4.26
689 745 1.736126 CTGTTCATGTACTGCTGGCTG 59.264 52.381 4.01 0.00 0.00 4.85
690 746 1.625315 TCTGTTCATGTACTGCTGGCT 59.375 47.619 4.01 0.00 0.00 4.75
691 747 2.099141 TCTGTTCATGTACTGCTGGC 57.901 50.000 4.01 0.00 0.00 4.85
692 748 3.668447 ACTTCTGTTCATGTACTGCTGG 58.332 45.455 4.01 0.86 0.00 4.85
693 749 3.366121 CGACTTCTGTTCATGTACTGCTG 59.634 47.826 4.01 2.92 0.00 4.41
694 750 3.579709 CGACTTCTGTTCATGTACTGCT 58.420 45.455 4.01 0.00 0.00 4.24
695 751 2.668457 CCGACTTCTGTTCATGTACTGC 59.332 50.000 4.01 0.00 0.00 4.40
696 752 3.254060 CCCGACTTCTGTTCATGTACTG 58.746 50.000 4.01 3.68 0.00 2.74
697 753 2.897969 ACCCGACTTCTGTTCATGTACT 59.102 45.455 4.01 0.00 0.00 2.73
698 754 3.251571 GACCCGACTTCTGTTCATGTAC 58.748 50.000 0.00 0.00 0.00 2.90
699 755 2.232941 GGACCCGACTTCTGTTCATGTA 59.767 50.000 0.00 0.00 0.00 2.29
700 756 1.002087 GGACCCGACTTCTGTTCATGT 59.998 52.381 0.00 0.00 0.00 3.21
701 757 1.276421 AGGACCCGACTTCTGTTCATG 59.724 52.381 0.00 0.00 0.00 3.07
702 758 1.645710 AGGACCCGACTTCTGTTCAT 58.354 50.000 0.00 0.00 0.00 2.57
703 759 1.420430 AAGGACCCGACTTCTGTTCA 58.580 50.000 0.00 0.00 0.00 3.18
704 760 2.545537 AAAGGACCCGACTTCTGTTC 57.454 50.000 0.00 0.00 0.00 3.18
705 761 2.171870 TGAAAAGGACCCGACTTCTGTT 59.828 45.455 0.00 0.00 0.00 3.16
706 762 1.766496 TGAAAAGGACCCGACTTCTGT 59.234 47.619 0.00 0.00 0.00 3.41
707 763 2.143925 GTGAAAAGGACCCGACTTCTG 58.856 52.381 0.00 0.00 0.00 3.02
708 764 1.766496 TGTGAAAAGGACCCGACTTCT 59.234 47.619 0.00 0.00 0.00 2.85
709 765 1.871676 GTGTGAAAAGGACCCGACTTC 59.128 52.381 0.00 0.00 0.00 3.01
710 766 1.210967 TGTGTGAAAAGGACCCGACTT 59.789 47.619 0.00 0.00 0.00 3.01
711 767 0.834612 TGTGTGAAAAGGACCCGACT 59.165 50.000 0.00 0.00 0.00 4.18
712 768 1.226746 CTGTGTGAAAAGGACCCGAC 58.773 55.000 0.00 0.00 0.00 4.79
713 769 0.834612 ACTGTGTGAAAAGGACCCGA 59.165 50.000 0.00 0.00 0.00 5.14
714 770 0.944386 CACTGTGTGAAAAGGACCCG 59.056 55.000 0.00 0.00 35.23 5.28
715 771 2.158813 TCTCACTGTGTGAAAAGGACCC 60.159 50.000 9.88 0.00 42.26 4.46
716 772 3.194005 TCTCACTGTGTGAAAAGGACC 57.806 47.619 9.88 0.00 42.26 4.46
717 773 4.380531 TCATCTCACTGTGTGAAAAGGAC 58.619 43.478 15.51 0.00 42.26 3.85
718 774 4.687901 TCATCTCACTGTGTGAAAAGGA 57.312 40.909 15.51 8.95 42.26 3.36
719 775 4.818546 AGTTCATCTCACTGTGTGAAAAGG 59.181 41.667 15.51 7.10 42.26 3.11
720 776 5.745514 CAGTTCATCTCACTGTGTGAAAAG 58.254 41.667 15.51 9.45 42.26 2.27
721 777 4.035558 GCAGTTCATCTCACTGTGTGAAAA 59.964 41.667 15.51 10.60 42.26 2.29
722 778 3.561310 GCAGTTCATCTCACTGTGTGAAA 59.439 43.478 15.51 5.04 42.26 2.69
723 779 3.133691 GCAGTTCATCTCACTGTGTGAA 58.866 45.455 15.51 11.48 42.26 3.18
724 780 2.366590 AGCAGTTCATCTCACTGTGTGA 59.633 45.455 14.13 14.13 43.21 3.58
725 781 2.479275 CAGCAGTTCATCTCACTGTGTG 59.521 50.000 7.79 5.56 43.21 3.82
726 782 2.549563 CCAGCAGTTCATCTCACTGTGT 60.550 50.000 7.79 0.00 43.21 3.72
727 783 2.074576 CCAGCAGTTCATCTCACTGTG 58.925 52.381 0.17 0.17 43.21 3.66
728 784 1.610102 GCCAGCAGTTCATCTCACTGT 60.610 52.381 2.24 0.00 43.21 3.55
729 785 1.085091 GCCAGCAGTTCATCTCACTG 58.915 55.000 0.00 0.00 43.99 3.66
730 786 0.982704 AGCCAGCAGTTCATCTCACT 59.017 50.000 0.00 0.00 0.00 3.41
731 787 1.085091 CAGCCAGCAGTTCATCTCAC 58.915 55.000 0.00 0.00 0.00 3.51
732 788 0.978907 TCAGCCAGCAGTTCATCTCA 59.021 50.000 0.00 0.00 0.00 3.27
733 789 1.367659 GTCAGCCAGCAGTTCATCTC 58.632 55.000 0.00 0.00 0.00 2.75
734 790 0.035630 GGTCAGCCAGCAGTTCATCT 60.036 55.000 0.00 0.00 34.09 2.90
735 791 1.364626 CGGTCAGCCAGCAGTTCATC 61.365 60.000 0.00 0.00 34.09 2.92
736 792 1.376424 CGGTCAGCCAGCAGTTCAT 60.376 57.895 0.00 0.00 34.09 2.57
737 793 2.031012 CGGTCAGCCAGCAGTTCA 59.969 61.111 0.00 0.00 34.09 3.18
738 794 2.031163 ACGGTCAGCCAGCAGTTC 59.969 61.111 0.00 0.00 34.09 3.01
739 795 2.116983 ATCACGGTCAGCCAGCAGTT 62.117 55.000 0.00 0.00 34.09 3.16
740 796 2.587247 ATCACGGTCAGCCAGCAGT 61.587 57.895 0.00 0.00 34.09 4.40
741 797 2.104859 CATCACGGTCAGCCAGCAG 61.105 63.158 0.00 0.00 34.09 4.24
742 798 2.046988 CATCACGGTCAGCCAGCA 60.047 61.111 0.00 0.00 34.09 4.41
743 799 2.821366 CCATCACGGTCAGCCAGC 60.821 66.667 0.00 0.00 34.09 4.85
760 816 1.009829 CCGCATGAAGAGGTAGCAAC 58.990 55.000 0.00 0.00 31.70 4.17
761 817 0.901827 TCCGCATGAAGAGGTAGCAA 59.098 50.000 0.00 0.00 38.50 3.91
762 818 1.123077 ATCCGCATGAAGAGGTAGCA 58.877 50.000 0.00 0.00 38.50 3.49
763 819 1.506493 CATCCGCATGAAGAGGTAGC 58.494 55.000 0.00 0.00 38.50 3.58
764 820 1.202568 TGCATCCGCATGAAGAGGTAG 60.203 52.381 0.00 0.00 45.36 3.18
765 821 0.829990 TGCATCCGCATGAAGAGGTA 59.170 50.000 0.00 0.00 45.36 3.08
766 822 1.603842 TGCATCCGCATGAAGAGGT 59.396 52.632 0.00 0.00 45.36 3.85
767 823 4.545929 TGCATCCGCATGAAGAGG 57.454 55.556 0.00 0.00 45.36 3.69
776 832 4.657824 GGCCATGCATGCATCCGC 62.658 66.667 30.07 29.51 33.90 5.54
777 833 2.094757 AATGGCCATGCATGCATCCG 62.095 55.000 30.07 22.42 33.90 4.18
781 837 0.613777 TTTCAATGGCCATGCATGCA 59.386 45.000 25.04 25.04 0.00 3.96
793 849 1.906994 TTCGGCCGCTCGTTTCAATG 61.907 55.000 23.51 0.00 0.00 2.82
794 850 1.635663 CTTCGGCCGCTCGTTTCAAT 61.636 55.000 23.51 0.00 0.00 2.57
808 864 0.888619 TACCTGTGTGCTCTCTTCGG 59.111 55.000 0.00 0.00 0.00 4.30
812 868 2.166829 CACTCTACCTGTGTGCTCTCT 58.833 52.381 0.00 0.00 34.12 3.10
813 869 1.203523 CCACTCTACCTGTGTGCTCTC 59.796 57.143 0.00 0.00 38.44 3.20
814 870 1.203063 TCCACTCTACCTGTGTGCTCT 60.203 52.381 0.00 0.00 38.44 4.09
815 871 1.203523 CTCCACTCTACCTGTGTGCTC 59.796 57.143 0.00 0.00 38.44 4.26
816 872 1.261480 CTCCACTCTACCTGTGTGCT 58.739 55.000 0.00 0.00 38.44 4.40
817 873 0.390472 GCTCCACTCTACCTGTGTGC 60.390 60.000 0.00 0.00 38.44 4.57
818 874 0.969149 TGCTCCACTCTACCTGTGTG 59.031 55.000 0.00 0.00 39.21 3.82
819 875 0.969894 GTGCTCCACTCTACCTGTGT 59.030 55.000 0.00 0.00 33.92 3.72
820 876 0.247736 GGTGCTCCACTCTACCTGTG 59.752 60.000 0.00 0.00 34.40 3.66
824 880 4.130255 TGGGTGCTCCACTCTACC 57.870 61.111 7.20 0.00 41.46 3.18
831 887 1.040339 GTGGTTTGTTGGGTGCTCCA 61.040 55.000 7.20 0.85 45.43 3.86
832 888 1.739667 GTGGTTTGTTGGGTGCTCC 59.260 57.895 0.00 0.00 0.00 4.70
836 892 1.316706 ACGTGGTGGTTTGTTGGGTG 61.317 55.000 0.00 0.00 0.00 4.61
850 908 1.459592 GTAGTGTAGCAAAGCACGTGG 59.540 52.381 18.88 0.86 40.26 4.94
864 922 3.629087 AGCGTGGTAGATTAGGTAGTGT 58.371 45.455 0.00 0.00 0.00 3.55
865 923 3.004524 GGAGCGTGGTAGATTAGGTAGTG 59.995 52.174 0.00 0.00 0.00 2.74
866 924 3.117587 AGGAGCGTGGTAGATTAGGTAGT 60.118 47.826 0.00 0.00 0.00 2.73
886 946 2.306512 AGGAGGTAGATAGGTAGCGAGG 59.693 54.545 0.00 0.00 0.00 4.63
898 958 0.321298 GTTTTGGCGCAGGAGGTAGA 60.321 55.000 10.83 0.00 0.00 2.59
920 980 9.543018 CACACGTACTACATGTCATATATACTG 57.457 37.037 0.00 1.72 0.00 2.74
927 987 7.148355 TCTTTCACACGTACTACATGTCATA 57.852 36.000 0.00 0.00 0.00 2.15
928 988 6.020971 TCTTTCACACGTACTACATGTCAT 57.979 37.500 0.00 0.00 0.00 3.06
929 989 5.441709 TCTTTCACACGTACTACATGTCA 57.558 39.130 0.00 0.00 0.00 3.58
930 990 9.383462 CTATATCTTTCACACGTACTACATGTC 57.617 37.037 0.00 0.00 0.00 3.06
931 991 9.117183 TCTATATCTTTCACACGTACTACATGT 57.883 33.333 2.69 2.69 0.00 3.21
934 994 8.728337 AGTCTATATCTTTCACACGTACTACA 57.272 34.615 0.00 0.00 0.00 2.74
938 998 7.531198 CGATGAGTCTATATCTTTCACACGTAC 59.469 40.741 0.00 0.00 0.00 3.67
939 999 7.440255 TCGATGAGTCTATATCTTTCACACGTA 59.560 37.037 0.00 0.00 0.00 3.57
940 1000 6.260271 TCGATGAGTCTATATCTTTCACACGT 59.740 38.462 0.00 0.00 0.00 4.49
942 1002 7.377397 GTGTCGATGAGTCTATATCTTTCACAC 59.623 40.741 0.00 0.00 0.00 3.82
943 1003 7.418408 GTGTCGATGAGTCTATATCTTTCACA 58.582 38.462 0.00 0.00 0.00 3.58
945 1005 6.016192 GGGTGTCGATGAGTCTATATCTTTCA 60.016 42.308 0.00 0.00 0.00 2.69
946 1006 6.383415 GGGTGTCGATGAGTCTATATCTTTC 58.617 44.000 0.00 0.00 0.00 2.62
947 1007 5.048643 CGGGTGTCGATGAGTCTATATCTTT 60.049 44.000 0.00 0.00 42.43 2.52
951 1011 3.082548 CCGGGTGTCGATGAGTCTATAT 58.917 50.000 0.00 0.00 42.43 0.86
952 1012 2.501261 CCGGGTGTCGATGAGTCTATA 58.499 52.381 0.00 0.00 42.43 1.31
953 1013 1.319541 CCGGGTGTCGATGAGTCTAT 58.680 55.000 0.00 0.00 42.43 1.98
954 1014 1.381928 GCCGGGTGTCGATGAGTCTA 61.382 60.000 2.18 0.00 42.43 2.59
956 1016 2.202756 GCCGGGTGTCGATGAGTC 60.203 66.667 2.18 0.00 42.43 3.36
959 1019 1.375396 CTTTGCCGGGTGTCGATGA 60.375 57.895 2.18 0.00 42.43 2.92
993 1074 1.732683 GTTGGCGCCCATTTTCGTG 60.733 57.895 26.77 0.00 31.53 4.35
996 1077 1.737735 GCTGTTGGCGCCCATTTTC 60.738 57.895 26.77 8.26 31.53 2.29
1015 1096 4.436998 GTCCAGGACGCGGAGGTG 62.437 72.222 12.47 1.65 31.65 4.00
1050 1134 2.284405 GGGAGGTGGAGGTCGGAA 60.284 66.667 0.00 0.00 0.00 4.30
1136 1238 2.184167 GTGGTGTCGTGGTTGTGGG 61.184 63.158 0.00 0.00 0.00 4.61
1157 1271 0.460987 CTTGAGGTCGGACATGAGGC 60.461 60.000 10.76 0.00 0.00 4.70
1164 1278 2.579738 GAGGCCTTGAGGTCGGAC 59.420 66.667 6.77 0.00 46.49 4.79
1201 1315 2.890371 GGCGAGCGGGTAGAAGAA 59.110 61.111 0.00 0.00 0.00 2.52
1227 1341 3.744719 CTGTTCGGGGCGAGACGA 61.745 66.667 0.00 0.00 37.14 4.20
1260 1386 1.608717 CGCCAGGCTGGTAGAAGAGT 61.609 60.000 32.80 0.00 40.46 3.24
1462 1597 3.872603 ACAGGCGGAGTGGTGCAA 61.873 61.111 0.00 0.00 0.00 4.08
1547 1682 4.758251 CGATGACTGGTGGCGGCA 62.758 66.667 7.97 7.97 0.00 5.69
1557 1692 3.685214 GAGCGTGCGGTCGATGACT 62.685 63.158 8.01 0.00 32.85 3.41
1593 1728 0.744874 TGGAGTAGATGCCGTACAGC 59.255 55.000 0.00 0.00 33.80 4.40
1596 1731 2.429610 TCCTTTGGAGTAGATGCCGTAC 59.570 50.000 0.00 0.00 0.00 3.67
1601 1736 2.284190 GCAGTCCTTTGGAGTAGATGC 58.716 52.381 0.00 0.00 32.96 3.91
1666 1801 4.477975 CGTCTCGTCGGGGACAGC 62.478 72.222 15.52 0.00 32.09 4.40
1675 1810 2.202324 GCTGGTCGTCGTCTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
1676 1811 2.668889 AGCTGGTCGTCGTCTCGT 60.669 61.111 0.00 0.00 0.00 4.18
1677 1812 2.098680 GAGCTGGTCGTCGTCTCG 59.901 66.667 0.00 0.00 0.00 4.04
1678 1813 1.984321 GAGGAGCTGGTCGTCGTCTC 61.984 65.000 12.93 4.43 30.65 3.36
1679 1814 2.034376 AGGAGCTGGTCGTCGTCT 59.966 61.111 0.00 0.00 0.00 4.18
1680 1815 2.486042 GAGGAGCTGGTCGTCGTC 59.514 66.667 12.93 0.00 30.65 4.20
1699 1834 2.607892 GGAGGCAGTGTGAACGTGC 61.608 63.158 0.00 0.00 36.42 5.34
1862 2006 6.517864 CGGAGAAAAGGAAGTAGGTTGTCTTA 60.518 42.308 0.00 0.00 0.00 2.10
1865 2009 3.995048 CGGAGAAAAGGAAGTAGGTTGTC 59.005 47.826 0.00 0.00 0.00 3.18
1991 2135 2.603652 AAAGAGGCCCTCCGTTCCC 61.604 63.158 7.26 0.00 37.47 3.97
2030 2174 0.976073 CCTCTTCCTGGAGGGCGTTA 60.976 60.000 5.93 0.00 46.63 3.18
2348 6071 4.094476 CCCCATCAACTATATAGACCCGT 58.906 47.826 16.79 0.00 0.00 5.28
2368 6093 2.696187 GGACTAGAACATGGACTCTCCC 59.304 54.545 0.00 0.00 35.03 4.30
2382 6107 1.752683 GAGAAGAGTGCCGGACTAGA 58.247 55.000 5.05 0.00 33.83 2.43
2416 6141 4.883585 TGATGAACTATTGGTGAAGATGGC 59.116 41.667 0.00 0.00 0.00 4.40
2474 6199 2.919228 ACCGAATTATTGTCCAGAGGC 58.081 47.619 0.00 0.00 0.00 4.70
2475 6200 5.277857 ACTACCGAATTATTGTCCAGAGG 57.722 43.478 0.00 0.00 0.00 3.69
2476 6201 7.040473 ACTACTACCGAATTATTGTCCAGAG 57.960 40.000 0.00 0.00 0.00 3.35
2674 6475 6.149633 GGCAATGATTAGGCTAATAAAACCG 58.850 40.000 19.27 7.84 0.00 4.44
2687 6488 7.868906 AAAAATCCAAATGGGCAATGATTAG 57.131 32.000 0.00 0.00 36.21 1.73
2725 6530 2.210116 CCGTCCGTCCATCTAAATTGG 58.790 52.381 0.00 0.00 35.45 3.16
2729 6534 3.003394 TCTACCGTCCGTCCATCTAAA 57.997 47.619 0.00 0.00 0.00 1.85
2741 6546 1.002684 CACGCTACTCCATCTACCGTC 60.003 57.143 0.00 0.00 0.00 4.79
2769 6574 1.526986 CGCAAATAGTTGTCCGCTTCG 60.527 52.381 4.65 0.00 37.06 3.79
2775 6580 6.663944 AGAGTAATTCGCAAATAGTTGTCC 57.336 37.500 4.65 0.00 37.06 4.02
2776 6581 6.895040 CGAAGAGTAATTCGCAAATAGTTGTC 59.105 38.462 4.65 0.00 44.73 3.18
2777 6582 6.762108 CGAAGAGTAATTCGCAAATAGTTGT 58.238 36.000 4.65 0.00 44.73 3.32
2813 6618 7.502226 AGGCAAATCCGTCTATGATTTTTCATA 59.498 33.333 0.00 0.00 39.71 2.15
2847 6652 8.389779 TCACAGTTATGCAATCTTTTTGTCTA 57.610 30.769 0.00 0.00 0.00 2.59
2854 6659 6.040842 ACCACTTTCACAGTTATGCAATCTTT 59.959 34.615 0.00 0.00 30.92 2.52
2884 6689 5.022282 TCATGATGGCATAAAGTCGAAGA 57.978 39.130 0.00 0.00 32.27 2.87
2913 6718 9.844257 AGGTTTCCAAAATTTCATTTTATCACA 57.156 25.926 0.00 0.00 40.27 3.58
2923 6728 4.494091 TGCCAAGGTTTCCAAAATTTCA 57.506 36.364 0.00 0.00 0.00 2.69
2924 6729 5.049474 GTGATGCCAAGGTTTCCAAAATTTC 60.049 40.000 0.00 0.00 0.00 2.17
2925 6730 4.821260 GTGATGCCAAGGTTTCCAAAATTT 59.179 37.500 0.00 0.00 0.00 1.82
2934 6740 1.963515 GTTCAGGTGATGCCAAGGTTT 59.036 47.619 0.00 0.00 40.61 3.27
3103 6909 9.829507 AAAAGTTCCATACATTCAAAACAATGA 57.170 25.926 0.25 0.00 37.24 2.57
3213 7019 9.081997 CGGCATTGTTTAAACATGTTTACATAT 57.918 29.630 26.72 17.66 38.95 1.78
3214 7020 8.297426 TCGGCATTGTTTAAACATGTTTACATA 58.703 29.630 26.72 17.68 38.95 2.29
3215 7021 7.148641 TCGGCATTGTTTAAACATGTTTACAT 58.851 30.769 26.72 15.11 38.95 2.29
3216 7022 6.504398 TCGGCATTGTTTAAACATGTTTACA 58.496 32.000 26.72 22.41 38.95 2.41
3217 7023 6.994868 TCGGCATTGTTTAAACATGTTTAC 57.005 33.333 26.72 20.35 38.95 2.01
3218 7024 8.328864 GTTTTCGGCATTGTTTAAACATGTTTA 58.671 29.630 23.91 23.91 38.95 2.01
3219 7025 6.910536 TTTCGGCATTGTTTAAACATGTTT 57.089 29.167 25.99 25.99 38.95 2.83
3220 7026 6.313905 TGTTTTCGGCATTGTTTAAACATGTT 59.686 30.769 21.17 4.92 38.95 2.71
3221 7027 5.812642 TGTTTTCGGCATTGTTTAAACATGT 59.187 32.000 21.17 10.81 38.95 3.21
3222 7028 6.279227 TGTTTTCGGCATTGTTTAAACATG 57.721 33.333 21.17 19.57 38.95 3.21
3223 7029 8.770438 ATATGTTTTCGGCATTGTTTAAACAT 57.230 26.923 21.17 9.23 44.07 2.71
3224 7030 8.594881 AATATGTTTTCGGCATTGTTTAAACA 57.405 26.923 17.01 17.01 39.09 2.83
3225 7031 9.312146 CAAATATGTTTTCGGCATTGTTTAAAC 57.688 29.630 11.54 11.54 0.00 2.01
3226 7032 9.046296 ACAAATATGTTTTCGGCATTGTTTAAA 57.954 25.926 0.00 0.00 35.91 1.52
3227 7033 8.594881 ACAAATATGTTTTCGGCATTGTTTAA 57.405 26.923 0.00 0.00 35.91 1.52
3243 7049 8.855110 TGTTTCACTACCATTCAACAAATATGT 58.145 29.630 0.00 0.00 43.14 2.29
3244 7050 9.859427 ATGTTTCACTACCATTCAACAAATATG 57.141 29.630 0.00 0.00 0.00 1.78
3247 7053 9.044150 CAAATGTTTCACTACCATTCAACAAAT 57.956 29.630 0.00 0.00 0.00 2.32
3248 7054 8.037758 ACAAATGTTTCACTACCATTCAACAAA 58.962 29.630 0.00 0.00 0.00 2.83
3249 7055 7.551585 ACAAATGTTTCACTACCATTCAACAA 58.448 30.769 0.00 0.00 0.00 2.83
3250 7056 7.106439 ACAAATGTTTCACTACCATTCAACA 57.894 32.000 0.00 0.00 0.00 3.33
3251 7057 7.920682 AGAACAAATGTTTCACTACCATTCAAC 59.079 33.333 0.00 0.00 38.56 3.18
3252 7058 8.006298 AGAACAAATGTTTCACTACCATTCAA 57.994 30.769 0.00 0.00 38.56 2.69
3253 7059 7.581213 AGAACAAATGTTTCACTACCATTCA 57.419 32.000 0.00 0.00 38.56 2.57
3254 7060 9.959749 TTTAGAACAAATGTTTCACTACCATTC 57.040 29.630 0.00 0.00 38.56 2.67
3255 7061 9.744468 GTTTAGAACAAATGTTTCACTACCATT 57.256 29.630 0.00 0.00 38.56 3.16
3256 7062 9.131791 AGTTTAGAACAAATGTTTCACTACCAT 57.868 29.630 0.00 0.00 38.56 3.55
3257 7063 8.514330 AGTTTAGAACAAATGTTTCACTACCA 57.486 30.769 0.00 0.00 38.56 3.25
3258 7064 9.874215 GTAGTTTAGAACAAATGTTTCACTACC 57.126 33.333 17.11 1.39 38.56 3.18
3304 7110 9.784680 CAAAAATGTGTTCATGAAAATTTCCAA 57.215 25.926 10.35 0.00 34.19 3.53
3305 7111 9.170734 TCAAAAATGTGTTCATGAAAATTTCCA 57.829 25.926 10.35 0.00 34.19 3.53
3309 7115 9.488124 CGTTTCAAAAATGTGTTCATGAAAATT 57.512 25.926 10.35 7.95 35.46 1.82
3310 7116 7.639461 GCGTTTCAAAAATGTGTTCATGAAAAT 59.361 29.630 10.35 1.74 35.46 1.82
3311 7117 6.958193 GCGTTTCAAAAATGTGTTCATGAAAA 59.042 30.769 10.35 0.76 35.46 2.29
3312 7118 6.473521 GCGTTTCAAAAATGTGTTCATGAAA 58.526 32.000 10.35 0.00 33.29 2.69
3313 7119 5.276114 CGCGTTTCAAAAATGTGTTCATGAA 60.276 36.000 3.38 3.38 34.19 2.57
3314 7120 4.205996 CGCGTTTCAAAAATGTGTTCATGA 59.794 37.500 0.00 0.00 34.19 3.07
3315 7121 4.435693 CGCGTTTCAAAAATGTGTTCATG 58.564 39.130 0.00 0.00 34.19 3.07
3316 7122 3.489047 CCGCGTTTCAAAAATGTGTTCAT 59.511 39.130 4.92 0.00 35.59 2.57
3317 7123 2.854777 CCGCGTTTCAAAAATGTGTTCA 59.145 40.909 4.92 0.00 0.00 3.18
3318 7124 2.217620 CCCGCGTTTCAAAAATGTGTTC 59.782 45.455 4.92 0.00 0.00 3.18
3319 7125 2.197577 CCCGCGTTTCAAAAATGTGTT 58.802 42.857 4.92 0.00 0.00 3.32
3320 7126 1.846541 CCCGCGTTTCAAAAATGTGT 58.153 45.000 4.92 0.00 0.00 3.72
3321 7127 0.506506 GCCCGCGTTTCAAAAATGTG 59.493 50.000 4.92 0.00 0.00 3.21
3322 7128 0.937231 CGCCCGCGTTTCAAAAATGT 60.937 50.000 4.92 0.00 34.35 2.71
3323 7129 1.772268 CGCCCGCGTTTCAAAAATG 59.228 52.632 4.92 0.00 34.35 2.32
3324 7130 2.019408 GCGCCCGCGTTTCAAAAAT 61.019 52.632 11.18 0.00 42.09 1.82
3325 7131 2.655685 GCGCCCGCGTTTCAAAAA 60.656 55.556 11.18 0.00 42.09 1.94
3326 7132 4.632458 GGCGCCCGCGTTTCAAAA 62.632 61.111 18.11 0.00 43.06 2.44
3337 7143 1.326951 AACATATGGGTTTGGCGCCC 61.327 55.000 26.77 8.57 46.26 6.13
3338 7144 0.534873 AAACATATGGGTTTGGCGCC 59.465 50.000 22.73 22.73 39.40 6.53
3344 7150 3.673902 GCCAAAGCAAACATATGGGTTT 58.326 40.909 7.80 4.88 41.44 3.27
3345 7151 3.333029 GCCAAAGCAAACATATGGGTT 57.667 42.857 7.80 0.00 39.53 4.11
3359 7165 3.379445 CAGCCCAGCCTGCCAAAG 61.379 66.667 0.00 0.00 0.00 2.77
3364 7170 3.944250 TTAAGCCAGCCCAGCCTGC 62.944 63.158 0.00 0.00 0.00 4.85
3365 7171 1.751927 CTTAAGCCAGCCCAGCCTG 60.752 63.158 0.00 0.00 0.00 4.85
3366 7172 1.793820 AACTTAAGCCAGCCCAGCCT 61.794 55.000 1.29 0.00 0.00 4.58
3367 7173 0.900182 AAACTTAAGCCAGCCCAGCC 60.900 55.000 1.29 0.00 0.00 4.85
3368 7174 0.528017 GAAACTTAAGCCAGCCCAGC 59.472 55.000 1.29 0.00 0.00 4.85
3369 7175 0.804989 CGAAACTTAAGCCAGCCCAG 59.195 55.000 1.29 0.00 0.00 4.45
3370 7176 0.608035 CCGAAACTTAAGCCAGCCCA 60.608 55.000 1.29 0.00 0.00 5.36
3371 7177 1.934220 GCCGAAACTTAAGCCAGCCC 61.934 60.000 1.29 0.00 0.00 5.19
3372 7178 0.960861 AGCCGAAACTTAAGCCAGCC 60.961 55.000 1.29 0.00 0.00 4.85
3373 7179 0.881796 AAGCCGAAACTTAAGCCAGC 59.118 50.000 1.29 0.00 0.00 4.85
3374 7180 2.151202 TGAAGCCGAAACTTAAGCCAG 58.849 47.619 1.29 0.00 0.00 4.85
3375 7181 2.151202 CTGAAGCCGAAACTTAAGCCA 58.849 47.619 1.29 0.00 0.00 4.75
3376 7182 2.152016 ACTGAAGCCGAAACTTAAGCC 58.848 47.619 1.29 0.00 32.02 4.35
3377 7183 3.898517 AACTGAAGCCGAAACTTAAGC 57.101 42.857 1.29 0.00 32.02 3.09
3378 7184 5.169836 ACAAACTGAAGCCGAAACTTAAG 57.830 39.130 0.00 0.00 34.67 1.85
3379 7185 5.570234 AACAAACTGAAGCCGAAACTTAA 57.430 34.783 0.00 0.00 0.00 1.85
3380 7186 5.570234 AAACAAACTGAAGCCGAAACTTA 57.430 34.783 0.00 0.00 0.00 2.24
3381 7187 4.450082 AAACAAACTGAAGCCGAAACTT 57.550 36.364 0.00 0.00 0.00 2.66
3382 7188 4.497507 GCTAAACAAACTGAAGCCGAAACT 60.498 41.667 0.00 0.00 0.00 2.66
3383 7189 3.729217 GCTAAACAAACTGAAGCCGAAAC 59.271 43.478 0.00 0.00 0.00 2.78
3384 7190 3.243267 GGCTAAACAAACTGAAGCCGAAA 60.243 43.478 0.00 0.00 42.98 3.46
3385 7191 2.292292 GGCTAAACAAACTGAAGCCGAA 59.708 45.455 0.00 0.00 42.98 4.30
3386 7192 1.877443 GGCTAAACAAACTGAAGCCGA 59.123 47.619 0.00 0.00 42.98 5.54
3387 7193 2.331809 GGCTAAACAAACTGAAGCCG 57.668 50.000 0.00 0.00 42.98 5.52
3389 7195 2.548480 ACTCGGCTAAACAAACTGAAGC 59.452 45.455 0.00 0.00 0.00 3.86
3390 7196 5.637810 TCATACTCGGCTAAACAAACTGAAG 59.362 40.000 0.00 0.00 0.00 3.02
3391 7197 5.543714 TCATACTCGGCTAAACAAACTGAA 58.456 37.500 0.00 0.00 0.00 3.02
3392 7198 5.142061 TCATACTCGGCTAAACAAACTGA 57.858 39.130 0.00 0.00 0.00 3.41
3393 7199 5.856126 TTCATACTCGGCTAAACAAACTG 57.144 39.130 0.00 0.00 0.00 3.16
3394 7200 6.072673 CCTTTTCATACTCGGCTAAACAAACT 60.073 38.462 0.00 0.00 0.00 2.66
3395 7201 6.072893 TCCTTTTCATACTCGGCTAAACAAAC 60.073 38.462 0.00 0.00 0.00 2.93
3396 7202 5.998981 TCCTTTTCATACTCGGCTAAACAAA 59.001 36.000 0.00 0.00 0.00 2.83
3397 7203 5.553123 TCCTTTTCATACTCGGCTAAACAA 58.447 37.500 0.00 0.00 0.00 2.83
3398 7204 5.046878 TCTCCTTTTCATACTCGGCTAAACA 60.047 40.000 0.00 0.00 0.00 2.83
3399 7205 5.416947 TCTCCTTTTCATACTCGGCTAAAC 58.583 41.667 0.00 0.00 0.00 2.01
3400 7206 5.670792 TCTCCTTTTCATACTCGGCTAAA 57.329 39.130 0.00 0.00 0.00 1.85
3401 7207 5.395324 CCTTCTCCTTTTCATACTCGGCTAA 60.395 44.000 0.00 0.00 0.00 3.09
3402 7208 4.099573 CCTTCTCCTTTTCATACTCGGCTA 59.900 45.833 0.00 0.00 0.00 3.93
3403 7209 3.118592 CCTTCTCCTTTTCATACTCGGCT 60.119 47.826 0.00 0.00 0.00 5.52
3404 7210 3.198872 CCTTCTCCTTTTCATACTCGGC 58.801 50.000 0.00 0.00 0.00 5.54
3405 7211 3.198872 GCCTTCTCCTTTTCATACTCGG 58.801 50.000 0.00 0.00 0.00 4.63
3406 7212 3.198872 GGCCTTCTCCTTTTCATACTCG 58.801 50.000 0.00 0.00 0.00 4.18
3407 7213 3.201045 AGGGCCTTCTCCTTTTCATACTC 59.799 47.826 0.00 0.00 0.00 2.59
3408 7214 3.193782 AGGGCCTTCTCCTTTTCATACT 58.806 45.455 0.00 0.00 0.00 2.12
3409 7215 3.653835 AGGGCCTTCTCCTTTTCATAC 57.346 47.619 0.00 0.00 0.00 2.39
3410 7216 3.852578 AGAAGGGCCTTCTCCTTTTCATA 59.147 43.478 37.31 0.00 46.42 2.15
3411 7217 2.651841 AGAAGGGCCTTCTCCTTTTCAT 59.348 45.455 37.31 16.78 46.42 2.57
3412 7218 2.065799 AGAAGGGCCTTCTCCTTTTCA 58.934 47.619 37.31 0.00 46.42 2.69
3413 7219 2.889170 AGAAGGGCCTTCTCCTTTTC 57.111 50.000 37.31 15.65 46.42 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.