Multiple sequence alignment - TraesCS4B01G294700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G294700 chr4B 100.000 3458 0 0 1 3458 580384045 580387502 0.000000e+00 6386.0
1 TraesCS4B01G294700 chr4B 81.027 1402 217 21 974 2355 580526711 580528083 0.000000e+00 1070.0
2 TraesCS4B01G294700 chr4B 92.814 167 11 1 3119 3285 532435000 532435165 1.240000e-59 241.0
3 TraesCS4B01G294700 chr4B 95.798 119 5 0 686 804 580384848 580384730 3.520000e-45 193.0
4 TraesCS4B01G294700 chr4B 92.241 116 9 0 687 802 646978868 646978753 7.680000e-37 165.0
5 TraesCS4B01G294700 chr4B 81.443 194 18 9 2968 3145 580500935 580501126 3.600000e-30 143.0
6 TraesCS4B01G294700 chr4B 97.561 82 0 2 3377 3458 463705274 463705195 4.650000e-29 139.0
7 TraesCS4B01G294700 chr4B 85.593 118 13 2 974 1091 580392998 580393111 1.690000e-23 121.0
8 TraesCS4B01G294700 chr4B 100.000 36 0 0 2768 2803 580386782 580386817 2.230000e-07 67.6
9 TraesCS4B01G294700 chr4B 100.000 36 0 0 2738 2773 580386812 580386847 2.230000e-07 67.6
10 TraesCS4B01G294700 chr4B 94.872 39 2 0 212 250 580392885 580392923 1.040000e-05 62.1
11 TraesCS4B01G294700 chr4D 92.251 1884 119 10 913 2773 464234830 464236709 0.000000e+00 2645.0
12 TraesCS4B01G294700 chr4D 82.822 1467 216 18 913 2355 464238134 464239588 0.000000e+00 1280.0
13 TraesCS4B01G294700 chr4D 90.968 465 20 11 105 561 464231986 464232436 1.060000e-169 606.0
14 TraesCS4B01G294700 chr4D 92.219 347 14 9 105 448 464230831 464231167 2.410000e-131 479.0
15 TraesCS4B01G294700 chr4D 95.439 285 13 0 2765 3049 464236671 464236955 4.070000e-124 455.0
16 TraesCS4B01G294700 chr4D 89.542 153 9 6 277 427 469618733 469618880 1.640000e-43 187.0
17 TraesCS4B01G294700 chr4D 83.163 196 15 12 466 649 464237775 464237964 2.760000e-36 163.0
18 TraesCS4B01G294700 chr4D 91.379 116 3 2 800 915 464234677 464234785 5.980000e-33 152.0
19 TraesCS4B01G294700 chr4D 86.364 88 9 2 802 889 464237963 464238047 3.670000e-15 93.5
20 TraesCS4B01G294700 chr4D 97.436 39 1 0 212 250 464234764 464234802 2.230000e-07 67.6
21 TraesCS4B01G294700 chr4D 97.436 39 1 0 212 250 464238060 464238098 2.230000e-07 67.6
22 TraesCS4B01G294700 chr4D 97.297 37 1 0 466 502 464231196 464231232 2.880000e-06 63.9
23 TraesCS4B01G294700 chr4D 96.875 32 0 1 663 693 464234653 464234684 6.000000e-03 52.8
24 TraesCS4B01G294700 chr4A 91.598 1452 105 5 922 2360 5816799 5815352 0.000000e+00 1989.0
25 TraesCS4B01G294700 chr4A 82.594 1465 218 24 912 2355 5813339 5811891 0.000000e+00 1258.0
26 TraesCS4B01G294700 chr4A 82.289 1389 196 23 988 2346 604659687 604661055 0.000000e+00 1157.0
27 TraesCS4B01G294700 chr4A 89.111 450 29 14 105 540 5817525 5817082 3.040000e-150 542.0
28 TraesCS4B01G294700 chr4A 85.561 187 22 2 466 649 5813661 5813477 1.270000e-44 191.0
29 TraesCS4B01G294700 chr4A 82.273 220 16 12 2904 3108 5814858 5814647 5.940000e-38 169.0
30 TraesCS4B01G294700 chr4A 91.743 109 9 0 1 109 352497015 352496907 5.980000e-33 152.0
31 TraesCS4B01G294700 chr4A 90.000 120 8 1 688 803 613157855 613157736 5.980000e-33 152.0
32 TraesCS4B01G294700 chr4A 90.517 116 5 4 688 802 583790387 583790277 7.730000e-32 148.0
33 TraesCS4B01G294700 chr4A 98.667 75 1 0 611 685 5817050 5816976 2.170000e-27 134.0
34 TraesCS4B01G294700 chr4A 82.727 110 3 6 809 918 5816934 5816841 2.210000e-12 84.2
35 TraesCS4B01G294700 chr2D 83.382 1378 201 15 994 2355 557479247 557477882 0.000000e+00 1251.0
36 TraesCS4B01G294700 chr2D 90.000 140 11 3 297 435 398097239 398097102 9.860000e-41 178.0
37 TraesCS4B01G294700 chr2D 87.838 74 4 5 365 435 32560460 32560531 7.950000e-12 82.4
38 TraesCS4B01G294700 chr5A 83.188 1380 206 12 994 2355 458477718 458479089 0.000000e+00 1240.0
39 TraesCS4B01G294700 chr5A 84.106 151 15 7 276 425 291267726 291267868 1.670000e-28 137.0
40 TraesCS4B01G294700 chr5D 82.527 1385 197 22 997 2355 560187503 560186138 0.000000e+00 1175.0
41 TraesCS4B01G294700 chr5B 80.234 1113 185 21 1022 2118 710502502 710503595 0.000000e+00 804.0
42 TraesCS4B01G294700 chr5B 92.683 164 12 0 3121 3284 96754840 96754677 1.600000e-58 237.0
43 TraesCS4B01G294700 chr5B 92.593 108 6 2 1 107 13356978 13357084 1.660000e-33 154.0
44 TraesCS4B01G294700 chr5B 91.818 110 7 2 1 109 411518906 411518798 5.980000e-33 152.0
45 TraesCS4B01G294700 chr5B 95.833 72 3 0 3376 3447 452377158 452377087 2.180000e-22 117.0
46 TraesCS4B01G294700 chr1B 93.976 166 9 1 3121 3285 470935686 470935521 2.060000e-62 250.0
47 TraesCS4B01G294700 chr1B 92.523 107 6 2 1 106 682006570 682006675 5.980000e-33 152.0
48 TraesCS4B01G294700 chr1B 97.561 82 2 0 3377 3458 683241843 683241924 1.290000e-29 141.0
49 TraesCS4B01G294700 chr6B 94.444 162 7 1 3121 3282 201450705 201450864 7.410000e-62 248.0
50 TraesCS4B01G294700 chr6B 92.727 165 12 0 3120 3284 172714263 172714099 4.460000e-59 239.0
51 TraesCS4B01G294700 chr6B 93.103 116 7 1 687 802 39203494 39203608 5.940000e-38 169.0
52 TraesCS4B01G294700 chr7D 91.071 168 15 0 3118 3285 397554913 397555080 9.650000e-56 228.0
53 TraesCS4B01G294700 chr7B 91.071 168 15 0 3118 3285 401532558 401532725 9.650000e-56 228.0
54 TraesCS4B01G294700 chr7B 97.561 82 2 0 3377 3458 104266456 104266375 1.290000e-29 141.0
55 TraesCS4B01G294700 chr7B 93.258 89 1 1 3375 3458 633833383 633833471 3.620000e-25 126.0
56 TraesCS4B01G294700 chr3A 91.975 162 13 0 3121 3282 585298142 585297981 9.650000e-56 228.0
57 TraesCS4B01G294700 chr3A 89.655 116 8 2 688 802 162672369 162672257 1.000000e-30 145.0
58 TraesCS4B01G294700 chr3D 91.463 164 14 0 3121 3284 187836308 187836471 3.470000e-55 226.0
59 TraesCS4B01G294700 chr3D 92.523 107 6 2 1 106 588394780 588394885 5.980000e-33 152.0
60 TraesCS4B01G294700 chr2A 93.966 116 6 1 688 803 712286593 712286707 1.280000e-39 174.0
61 TraesCS4B01G294700 chr2A 85.350 157 17 5 280 435 535291838 535291687 1.280000e-34 158.0
62 TraesCS4B01G294700 chr2A 90.991 111 8 2 1 110 346197304 346197195 7.730000e-32 148.0
63 TraesCS4B01G294700 chr2A 86.179 123 10 4 682 803 775593430 775593546 3.620000e-25 126.0
64 TraesCS4B01G294700 chr3B 91.743 109 9 0 1 109 762625038 762624930 5.980000e-33 152.0
65 TraesCS4B01G294700 chr2B 92.453 106 6 1 303 408 661172991 661172888 2.150000e-32 150.0
66 TraesCS4B01G294700 chr2B 88.889 117 13 0 1 117 717236916 717236800 1.000000e-30 145.0
67 TraesCS4B01G294700 chr2B 96.386 83 1 2 3377 3458 767178371 767178452 6.020000e-28 135.0
68 TraesCS4B01G294700 chr2B 87.931 116 9 2 687 802 5822410 5822520 7.790000e-27 132.0
69 TraesCS4B01G294700 chr2B 90.698 86 6 2 3373 3458 656959936 656959853 2.820000e-21 113.0
70 TraesCS4B01G294700 chr1D 92.381 105 8 0 2 106 289647974 289648078 2.150000e-32 150.0
71 TraesCS4B01G294700 chr6A 97.143 70 2 0 3378 3447 575100963 575100894 6.060000e-23 119.0
72 TraesCS4B01G294700 chr7A 90.476 84 5 2 3377 3458 689676715 689676633 1.310000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G294700 chr4B 580384045 580387502 3457 False 2173.733333 6386 100.000000 1 3458 3 chr4B.!!$F4 3457
1 TraesCS4B01G294700 chr4B 580526711 580528083 1372 False 1070.000000 1070 81.027000 974 2355 1 chr4B.!!$F3 1381
2 TraesCS4B01G294700 chr4D 464230831 464239588 8757 False 510.450000 2645 91.970750 105 3049 12 chr4D.!!$F2 2944
3 TraesCS4B01G294700 chr4A 604659687 604661055 1368 False 1157.000000 1157 82.289000 988 2346 1 chr4A.!!$F1 1358
4 TraesCS4B01G294700 chr4A 5811891 5817525 5634 True 623.885714 1989 87.504429 105 3108 7 chr4A.!!$R4 3003
5 TraesCS4B01G294700 chr2D 557477882 557479247 1365 True 1251.000000 1251 83.382000 994 2355 1 chr2D.!!$R2 1361
6 TraesCS4B01G294700 chr5A 458477718 458479089 1371 False 1240.000000 1240 83.188000 994 2355 1 chr5A.!!$F2 1361
7 TraesCS4B01G294700 chr5D 560186138 560187503 1365 True 1175.000000 1175 82.527000 997 2355 1 chr5D.!!$R1 1358
8 TraesCS4B01G294700 chr5B 710502502 710503595 1093 False 804.000000 804 80.234000 1022 2118 1 chr5B.!!$F2 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 3977 0.033699 GTACCTGGTACTCCCTCCGT 60.034 60.0 26.01 0.0 36.25 4.69 F
1734 5100 0.036952 CCACATTCACGCTGACTCCT 60.037 55.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 5499 0.039256 CGAACACCATGCCAACCTTG 60.039 55.0 0.0 0.0 0.00 3.61 R
3401 7823 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.0 0.0 0.0 41.75 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.266323 TCAGAACTGAAATACGTCTAGATGC 58.734 40.000 12.04 0.00 36.53 3.91
57 58 6.036470 CAGAACTGAAATACGTCTAGATGCA 58.964 40.000 12.04 0.00 0.00 3.96
58 59 6.699204 CAGAACTGAAATACGTCTAGATGCAT 59.301 38.462 12.04 0.00 0.00 3.96
59 60 6.920758 AGAACTGAAATACGTCTAGATGCATC 59.079 38.462 19.37 19.37 0.00 3.91
60 61 6.398234 ACTGAAATACGTCTAGATGCATCT 57.602 37.500 30.85 30.85 40.86 2.90
61 62 6.442952 ACTGAAATACGTCTAGATGCATCTC 58.557 40.000 31.92 17.14 38.32 2.75
62 63 6.264292 ACTGAAATACGTCTAGATGCATCTCT 59.736 38.462 31.92 13.92 38.32 3.10
63 64 7.043961 TGAAATACGTCTAGATGCATCTCTT 57.956 36.000 31.92 14.31 38.32 2.85
64 65 7.492524 TGAAATACGTCTAGATGCATCTCTTT 58.507 34.615 31.92 18.65 38.32 2.52
65 66 8.630037 TGAAATACGTCTAGATGCATCTCTTTA 58.370 33.333 31.92 14.27 38.32 1.85
66 67 9.632807 GAAATACGTCTAGATGCATCTCTTTAT 57.367 33.333 31.92 18.08 38.32 1.40
70 71 8.574251 ACGTCTAGATGCATCTCTTTATATCT 57.426 34.615 31.92 8.43 38.32 1.98
71 72 9.674068 ACGTCTAGATGCATCTCTTTATATCTA 57.326 33.333 31.92 10.19 38.32 1.98
96 97 7.789341 TTTTGATGACAAATATTTTCGGACG 57.211 32.000 0.00 0.00 43.99 4.79
97 98 5.478233 TGATGACAAATATTTTCGGACGG 57.522 39.130 0.00 0.00 0.00 4.79
98 99 5.179533 TGATGACAAATATTTTCGGACGGA 58.820 37.500 0.00 0.00 0.00 4.69
99 100 5.293324 TGATGACAAATATTTTCGGACGGAG 59.707 40.000 0.00 0.00 0.00 4.63
100 101 3.936453 TGACAAATATTTTCGGACGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
101 102 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
102 103 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
103 104 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
108 109 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
161 162 3.134458 GTCAGGTCCTTCTCAAACACTG 58.866 50.000 0.00 0.00 0.00 3.66
350 1508 9.884636 ACTATATGTGTGTAGTAGAATGCAAAA 57.115 29.630 0.00 0.00 31.39 2.44
374 1532 9.672673 AAAAATACACTACTGTATGCTCATTCT 57.327 29.630 0.00 0.00 41.92 2.40
388 1546 7.649533 ATGCTCATTCTGTGAATATTCCAAA 57.350 32.000 12.90 7.94 36.14 3.28
415 1573 4.863152 GCAATTTGAGTGCAAAGTTGTT 57.137 36.364 0.00 0.00 46.27 2.83
416 1574 4.580528 GCAATTTGAGTGCAAAGTTGTTG 58.419 39.130 0.00 0.00 46.27 3.33
417 1575 4.580528 CAATTTGAGTGCAAAGTTGTTGC 58.419 39.130 4.12 4.12 46.27 4.17
429 1588 7.435203 GCAAAGTTGTTGCAATTTTTAAAGG 57.565 32.000 0.59 0.00 44.34 3.11
458 1617 7.309770 TGGGTCCTTTAAAGTGCAATTTTAT 57.690 32.000 18.18 0.00 27.82 1.40
459 1618 8.423906 TGGGTCCTTTAAAGTGCAATTTTATA 57.576 30.769 18.18 6.26 27.82 0.98
460 1619 8.308207 TGGGTCCTTTAAAGTGCAATTTTATAC 58.692 33.333 18.18 9.07 27.82 1.47
461 1620 8.528643 GGGTCCTTTAAAGTGCAATTTTATACT 58.471 33.333 18.18 0.00 27.82 2.12
462 1621 9.569167 GGTCCTTTAAAGTGCAATTTTATACTC 57.431 33.333 18.18 5.41 27.82 2.59
463 1622 9.569167 GTCCTTTAAAGTGCAATTTTATACTCC 57.431 33.333 18.18 0.00 27.82 3.85
464 1623 8.455682 TCCTTTAAAGTGCAATTTTATACTCCG 58.544 33.333 18.18 0.00 27.82 4.63
546 1705 4.553323 GCATATTGGATGCATTGAAGGAC 58.447 43.478 0.00 0.00 44.00 3.85
547 1706 4.560108 GCATATTGGATGCATTGAAGGACC 60.560 45.833 0.00 0.00 44.00 4.46
561 1723 3.519510 TGAAGGACCCAGAGGAGTTATTG 59.480 47.826 0.00 0.00 36.73 1.90
567 2062 2.503356 CCCAGAGGAGTTATTGTCAGCT 59.497 50.000 0.00 0.00 33.47 4.24
575 2070 5.068460 AGGAGTTATTGTCAGCTAGCAGTAG 59.932 44.000 18.83 3.78 0.00 2.57
587 2082 7.223777 GTCAGCTAGCAGTAGATAAAAAGAAGG 59.776 40.741 18.83 0.00 0.00 3.46
589 2084 5.817816 GCTAGCAGTAGATAAAAAGAAGGCA 59.182 40.000 10.63 0.00 0.00 4.75
608 2103 2.687935 GCAGGTCCTTTTCAAACACTGA 59.312 45.455 0.00 0.00 0.00 3.41
609 2104 3.319122 GCAGGTCCTTTTCAAACACTGAT 59.681 43.478 0.00 0.00 32.78 2.90
622 2117 8.408043 TTCAAACACTGATAGGTTGATCATTT 57.592 30.769 0.00 0.00 35.32 2.32
690 3969 1.559682 CCATGCTTGGTACCTGGTACT 59.440 52.381 30.23 11.79 38.85 2.73
691 3970 2.420129 CCATGCTTGGTACCTGGTACTC 60.420 54.545 30.23 21.97 38.85 2.59
693 3972 0.540454 GCTTGGTACCTGGTACTCCC 59.460 60.000 30.23 18.22 38.85 4.30
694 3973 1.900337 GCTTGGTACCTGGTACTCCCT 60.900 57.143 30.23 0.00 38.85 4.20
695 3974 2.108970 CTTGGTACCTGGTACTCCCTC 58.891 57.143 30.23 17.14 38.85 4.30
696 3975 0.337428 TGGTACCTGGTACTCCCTCC 59.663 60.000 30.23 16.94 38.85 4.30
697 3976 0.754587 GGTACCTGGTACTCCCTCCG 60.755 65.000 30.23 0.00 38.85 4.63
698 3977 0.033699 GTACCTGGTACTCCCTCCGT 60.034 60.000 26.01 0.00 36.25 4.69
699 3978 0.706433 TACCTGGTACTCCCTCCGTT 59.294 55.000 1.49 0.00 0.00 4.44
700 3979 0.614134 ACCTGGTACTCCCTCCGTTC 60.614 60.000 0.00 0.00 0.00 3.95
703 3982 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
705 3984 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
706 3985 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
707 3986 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
708 3987 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
709 3988 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
711 3990 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
712 3991 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
714 3993 3.749609 CCTCCGTTCCGAATTACTTGTTT 59.250 43.478 0.00 0.00 0.00 2.83
715 3994 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
716 3995 5.409214 CCTCCGTTCCGAATTACTTGTTTTA 59.591 40.000 0.00 0.00 0.00 1.52
717 3996 6.401796 CCTCCGTTCCGAATTACTTGTTTTAG 60.402 42.308 0.00 0.00 0.00 1.85
719 3998 6.146021 TCCGTTCCGAATTACTTGTTTTAGAC 59.854 38.462 0.00 0.00 0.00 2.59
720 3999 6.146673 CCGTTCCGAATTACTTGTTTTAGACT 59.853 38.462 0.00 0.00 0.00 3.24
721 4000 7.307573 CCGTTCCGAATTACTTGTTTTAGACTT 60.308 37.037 0.00 0.00 0.00 3.01
726 4005 9.199982 CCGAATTACTTGTTTTAGACTTGTCTA 57.800 33.333 6.41 6.41 0.00 2.59
732 4011 8.967552 ACTTGTTTTAGACTTGTCTAGATACG 57.032 34.615 9.96 0.00 0.00 3.06
733 4012 8.027771 ACTTGTTTTAGACTTGTCTAGATACGG 58.972 37.037 9.96 8.95 0.00 4.02
734 4013 7.692460 TGTTTTAGACTTGTCTAGATACGGA 57.308 36.000 9.96 0.00 0.00 4.69
735 4014 8.289939 TGTTTTAGACTTGTCTAGATACGGAT 57.710 34.615 9.96 0.00 0.00 4.18
736 4015 8.188799 TGTTTTAGACTTGTCTAGATACGGATG 58.811 37.037 9.96 0.00 0.00 3.51
737 4016 7.876936 TTTAGACTTGTCTAGATACGGATGT 57.123 36.000 9.96 0.00 0.00 3.06
738 4017 8.969260 TTTAGACTTGTCTAGATACGGATGTA 57.031 34.615 9.96 0.00 34.45 2.29
739 4018 9.570468 TTTAGACTTGTCTAGATACGGATGTAT 57.430 33.333 9.96 0.00 43.97 2.29
775 4054 7.499321 ACATCCGTATCTAGACAAGTCTAAG 57.501 40.000 10.81 6.05 41.22 2.18
776 4055 7.281098 ACATCCGTATCTAGACAAGTCTAAGA 58.719 38.462 10.81 10.31 41.22 2.10
777 4056 7.227116 ACATCCGTATCTAGACAAGTCTAAGAC 59.773 40.741 10.81 8.06 41.22 3.01
778 4057 6.647229 TCCGTATCTAGACAAGTCTAAGACA 58.353 40.000 10.81 0.00 41.22 3.41
779 4058 7.108194 TCCGTATCTAGACAAGTCTAAGACAA 58.892 38.462 10.81 2.25 41.22 3.18
780 4059 7.280428 TCCGTATCTAGACAAGTCTAAGACAAG 59.720 40.741 10.81 1.06 41.22 3.16
781 4060 7.066043 CCGTATCTAGACAAGTCTAAGACAAGT 59.934 40.741 10.81 0.00 41.22 3.16
782 4061 9.096160 CGTATCTAGACAAGTCTAAGACAAGTA 57.904 37.037 10.81 0.14 41.22 2.24
789 4068 8.861086 AGACAAGTCTAAGACAAGTAATTCAGA 58.139 33.333 0.00 0.00 38.35 3.27
790 4069 9.477484 GACAAGTCTAAGACAAGTAATTCAGAA 57.523 33.333 0.00 0.00 34.60 3.02
791 4070 9.262358 ACAAGTCTAAGACAAGTAATTCAGAAC 57.738 33.333 0.00 0.00 34.60 3.01
792 4071 8.428536 CAAGTCTAAGACAAGTAATTCAGAACG 58.571 37.037 0.00 0.00 34.60 3.95
793 4072 7.091443 AGTCTAAGACAAGTAATTCAGAACGG 58.909 38.462 0.00 0.00 34.60 4.44
794 4073 7.039923 AGTCTAAGACAAGTAATTCAGAACGGA 60.040 37.037 0.00 0.00 34.60 4.69
795 4074 7.273815 GTCTAAGACAAGTAATTCAGAACGGAG 59.726 40.741 0.00 0.00 32.09 4.63
796 4075 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
797 4076 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
798 4077 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
799 4078 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
800 4079 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
801 4080 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
802 4081 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
803 4082 1.553706 TTCAGAACGGAGGGAGTACC 58.446 55.000 0.00 0.00 40.67 3.34
841 4120 2.127232 GGCAGTTGAAACGAGCGC 60.127 61.111 0.00 0.00 36.25 5.92
857 4136 3.177920 GCACGAGAGAGCGCACAG 61.178 66.667 11.47 0.00 38.08 3.66
858 4137 2.256764 CACGAGAGAGCGCACAGT 59.743 61.111 11.47 0.00 33.86 3.55
859 4138 1.502190 CACGAGAGAGCGCACAGTA 59.498 57.895 11.47 0.00 33.86 2.74
860 4139 0.522286 CACGAGAGAGCGCACAGTAG 60.522 60.000 11.47 0.00 33.86 2.57
896 4175 0.822121 GGAGGCGTTTGAACCCAACT 60.822 55.000 4.84 0.00 30.88 3.16
986 4320 0.466555 TCCCACCAAAGTTTCACCGG 60.467 55.000 0.00 0.00 0.00 5.28
1063 4397 3.957435 ATCAGGCCGTCCGACCTCA 62.957 63.158 0.00 0.00 37.47 3.86
1216 4565 3.474570 CCCTCTCCAAGGCCCTCG 61.475 72.222 0.00 0.00 44.71 4.63
1314 4669 3.998672 GACGCCGTCCCCTTCACA 61.999 66.667 5.81 0.00 0.00 3.58
1456 4814 4.021925 AGGCCACGGTTCTGCTCC 62.022 66.667 5.01 0.00 0.00 4.70
1497 4855 3.036084 GTCACCGTGCACCACTCG 61.036 66.667 12.15 0.00 35.08 4.18
1602 4960 1.299089 CATCGACCGCACGCTCATA 60.299 57.895 0.00 0.00 0.00 2.15
1698 5056 0.908198 GCAGAATGTCCTCTGTCCCT 59.092 55.000 2.81 0.00 44.04 4.20
1734 5100 0.036952 CCACATTCACGCTGACTCCT 60.037 55.000 0.00 0.00 0.00 3.69
1743 5109 1.662438 CGCTGACTCCTGAGGTCCTC 61.662 65.000 12.40 12.40 33.22 3.71
1872 5247 2.030805 CCGAGCCAAAAAGGAACAGAAG 60.031 50.000 0.00 0.00 41.22 2.85
1891 5266 3.409026 AGCAAACAAAAACAACCCACA 57.591 38.095 0.00 0.00 0.00 4.17
2046 5421 1.521457 GGCATTCACGGCGATCTCA 60.521 57.895 16.62 0.00 0.00 3.27
2049 5424 0.933097 CATTCACGGCGATCTCAAGG 59.067 55.000 16.62 0.00 0.00 3.61
2093 5468 3.706373 TTCGCAGGAGAGGTGGGC 61.706 66.667 0.00 0.00 0.00 5.36
2129 5504 4.035102 GAAGGAGGCCGCCAAGGT 62.035 66.667 28.68 9.57 43.70 3.50
2130 5505 3.569200 GAAGGAGGCCGCCAAGGTT 62.569 63.158 28.68 13.11 43.70 3.50
2142 5517 0.318120 CCAAGGTTGGCATGGTGTTC 59.682 55.000 0.00 0.00 42.21 3.18
2190 5565 5.333798 CGTGTATGACATCGACTTTGGTTTT 60.334 40.000 0.00 0.00 0.00 2.43
2193 5568 3.546724 TGACATCGACTTTGGTTTTGGA 58.453 40.909 0.00 0.00 0.00 3.53
2200 5575 3.140225 TTTGGTTTTGGACGGCCGC 62.140 57.895 28.58 18.35 36.79 6.53
2327 5709 2.593346 ATTTTCAACGGTGCTTTGCA 57.407 40.000 0.00 0.00 35.60 4.08
2346 5728 0.396556 AGAAGCCATGCATGCCATCA 60.397 50.000 21.69 0.00 29.71 3.07
2355 5737 0.249322 GCATGCCATCAGGATGCAAC 60.249 55.000 6.36 0.00 42.74 4.17
2375 5757 6.051717 GCAACAAGAATAAGGCATCTCTCTA 58.948 40.000 0.00 0.00 0.00 2.43
2471 5881 8.840200 TCTTTATTGTAGTACTCCAAGATCCT 57.160 34.615 7.01 0.00 0.00 3.24
2656 6076 8.717821 GTTGGAAAGTTCAGCTTTTAAAAGTTT 58.282 29.630 24.95 17.13 46.54 2.66
2680 6100 8.572828 TTAACATGCACTGTATTTTGAAACAG 57.427 30.769 0.00 1.10 46.84 3.16
2686 6106 5.009610 GCACTGTATTTTGAAACAGAGGGAA 59.990 40.000 9.30 0.00 44.79 3.97
2692 6112 4.712122 TTTGAAACAGAGGGAACAACAC 57.288 40.909 0.00 0.00 0.00 3.32
2718 6138 2.644798 GTTAGCCCTCATGGATATGGGT 59.355 50.000 0.00 0.00 41.59 4.51
2734 6154 1.847737 TGGGTCCACCACTGTAAACTT 59.152 47.619 0.00 0.00 46.80 2.66
2735 6155 2.242708 TGGGTCCACCACTGTAAACTTT 59.757 45.455 0.00 0.00 46.80 2.66
2736 6156 2.621526 GGGTCCACCACTGTAAACTTTG 59.378 50.000 0.00 0.00 39.85 2.77
2737 6157 3.284617 GGTCCACCACTGTAAACTTTGT 58.715 45.455 0.00 0.00 35.64 2.83
2738 6158 3.697542 GGTCCACCACTGTAAACTTTGTT 59.302 43.478 0.00 0.00 35.64 2.83
2739 6159 4.883006 GGTCCACCACTGTAAACTTTGTTA 59.117 41.667 0.00 0.00 35.64 2.41
2740 6160 5.357596 GGTCCACCACTGTAAACTTTGTTAA 59.642 40.000 0.00 0.00 35.64 2.01
2741 6161 6.040054 GGTCCACCACTGTAAACTTTGTTAAT 59.960 38.462 0.00 0.00 35.64 1.40
2742 6162 7.417003 GGTCCACCACTGTAAACTTTGTTAATT 60.417 37.037 0.00 0.00 35.64 1.40
2743 6163 7.646526 GTCCACCACTGTAAACTTTGTTAATTC 59.353 37.037 0.00 0.00 0.00 2.17
2744 6164 6.635239 CCACCACTGTAAACTTTGTTAATTCG 59.365 38.462 0.00 0.00 0.00 3.34
2745 6165 7.411274 CACCACTGTAAACTTTGTTAATTCGA 58.589 34.615 0.00 0.00 0.00 3.71
2746 6166 8.073768 CACCACTGTAAACTTTGTTAATTCGAT 58.926 33.333 0.00 0.00 0.00 3.59
2747 6167 8.626526 ACCACTGTAAACTTTGTTAATTCGATT 58.373 29.630 0.00 0.00 0.00 3.34
2748 6168 8.901748 CCACTGTAAACTTTGTTAATTCGATTG 58.098 33.333 0.00 0.00 0.00 2.67
2749 6169 9.445786 CACTGTAAACTTTGTTAATTCGATTGT 57.554 29.630 0.00 0.00 0.00 2.71
2755 6175 7.623268 ACTTTGTTAATTCGATTGTTCAAGC 57.377 32.000 0.00 0.00 0.00 4.01
2756 6176 7.425606 ACTTTGTTAATTCGATTGTTCAAGCT 58.574 30.769 0.00 0.00 0.00 3.74
2757 6177 7.379529 ACTTTGTTAATTCGATTGTTCAAGCTG 59.620 33.333 0.00 0.00 0.00 4.24
2758 6178 6.312399 TGTTAATTCGATTGTTCAAGCTGT 57.688 33.333 0.00 0.00 0.00 4.40
2759 6179 6.734137 TGTTAATTCGATTGTTCAAGCTGTT 58.266 32.000 0.00 0.00 0.00 3.16
2760 6180 6.636447 TGTTAATTCGATTGTTCAAGCTGTTG 59.364 34.615 0.00 0.00 34.67 3.33
2761 6181 2.686558 TCGATTGTTCAAGCTGTTGC 57.313 45.000 0.00 0.00 40.05 4.17
2762 6182 1.946081 TCGATTGTTCAAGCTGTTGCA 59.054 42.857 0.00 0.00 42.74 4.08
2763 6183 2.046313 CGATTGTTCAAGCTGTTGCAC 58.954 47.619 0.00 0.00 42.74 4.57
2779 6199 4.759693 TGTTGCACTCCTTAATTCGATTGT 59.240 37.500 0.00 0.00 0.00 2.71
2796 6216 1.024271 TGTTCAAGCTGTTGCACTCC 58.976 50.000 0.00 0.00 42.74 3.85
2810 6230 2.811431 TGCACTCCTTAATTTGTGGTCG 59.189 45.455 0.00 0.00 0.00 4.79
2852 6272 8.453320 TGTCATGCTATGAATTTGTAAAGTCAG 58.547 33.333 12.19 2.72 44.75 3.51
2859 6279 6.187727 TGAATTTGTAAAGTCAGAGACCCT 57.812 37.500 3.65 0.00 37.99 4.34
2862 6282 7.559897 TGAATTTGTAAAGTCAGAGACCCTTTT 59.440 33.333 3.65 0.00 37.99 2.27
3049 6512 5.045432 AGCATCATGTTGGGGATTCAAATTT 60.045 36.000 5.93 0.00 0.00 1.82
3050 6513 6.156602 AGCATCATGTTGGGGATTCAAATTTA 59.843 34.615 5.93 0.00 0.00 1.40
3051 6514 6.822676 GCATCATGTTGGGGATTCAAATTTAA 59.177 34.615 5.93 0.00 0.00 1.52
3052 6515 7.336427 GCATCATGTTGGGGATTCAAATTTAAA 59.664 33.333 5.93 0.00 0.00 1.52
3054 6517 7.393216 TCATGTTGGGGATTCAAATTTAAAGG 58.607 34.615 0.00 0.00 0.00 3.11
3055 6518 5.555966 TGTTGGGGATTCAAATTTAAAGGC 58.444 37.500 0.00 0.00 0.00 4.35
3056 6519 4.835284 TGGGGATTCAAATTTAAAGGCC 57.165 40.909 0.00 0.00 0.00 5.19
3057 6520 4.171234 TGGGGATTCAAATTTAAAGGCCA 58.829 39.130 5.01 0.00 0.00 5.36
3058 6521 4.787534 TGGGGATTCAAATTTAAAGGCCAT 59.212 37.500 5.01 0.00 0.00 4.40
3059 6522 5.966935 TGGGGATTCAAATTTAAAGGCCATA 59.033 36.000 5.01 0.00 0.00 2.74
3060 6523 6.445139 TGGGGATTCAAATTTAAAGGCCATAA 59.555 34.615 5.01 0.34 0.00 1.90
3061 6524 7.037297 TGGGGATTCAAATTTAAAGGCCATAAA 60.037 33.333 5.01 10.91 0.00 1.40
3062 6525 7.831690 GGGGATTCAAATTTAAAGGCCATAAAA 59.168 33.333 15.22 8.05 0.00 1.52
3064 6527 9.225436 GGATTCAAATTTAAAGGCCATAAAACA 57.775 29.630 15.22 0.00 0.00 2.83
3076 6554 4.522789 GGCCATAAAACATATACACCTGGG 59.477 45.833 0.00 0.00 0.00 4.45
3128 6606 5.416271 TGGACACAAACTTATACTCCCTC 57.584 43.478 0.00 0.00 0.00 4.30
3130 6608 4.430908 GACACAAACTTATACTCCCTCCG 58.569 47.826 0.00 0.00 0.00 4.63
3131 6609 3.836562 ACACAAACTTATACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
3132 6610 4.285260 ACACAAACTTATACTCCCTCCGTT 59.715 41.667 0.00 0.00 0.00 4.44
3133 6611 4.868734 CACAAACTTATACTCCCTCCGTTC 59.131 45.833 0.00 0.00 0.00 3.95
3134 6612 4.081254 ACAAACTTATACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
3135 6613 2.675583 ACTTATACTCCCTCCGTTCCC 58.324 52.381 0.00 0.00 0.00 3.97
3136 6614 2.023695 ACTTATACTCCCTCCGTTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
3137 6615 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3138 6616 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3139 6617 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
3140 6618 0.328258 ACTCCCTCCGTTCCCAAATG 59.672 55.000 0.00 0.00 0.00 2.32
3141 6619 0.328258 CTCCCTCCGTTCCCAAATGT 59.672 55.000 0.00 0.00 0.00 2.71
3142 6620 1.557832 CTCCCTCCGTTCCCAAATGTA 59.442 52.381 0.00 0.00 0.00 2.29
3143 6621 1.986631 TCCCTCCGTTCCCAAATGTAA 59.013 47.619 0.00 0.00 0.00 2.41
3144 6622 2.026636 TCCCTCCGTTCCCAAATGTAAG 60.027 50.000 0.00 0.00 0.00 2.34
3145 6623 2.290705 CCCTCCGTTCCCAAATGTAAGT 60.291 50.000 0.00 0.00 0.00 2.24
3146 6624 3.007635 CCTCCGTTCCCAAATGTAAGTC 58.992 50.000 0.00 0.00 0.00 3.01
3147 6625 3.307480 CCTCCGTTCCCAAATGTAAGTCT 60.307 47.826 0.00 0.00 0.00 3.24
3148 6626 4.324267 CTCCGTTCCCAAATGTAAGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3149 6627 4.721132 TCCGTTCCCAAATGTAAGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
3150 6628 4.758165 TCCGTTCCCAAATGTAAGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
3151 6629 4.760204 CCGTTCCCAAATGTAAGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
3152 6630 5.935789 CCGTTCCCAAATGTAAGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
3153 6631 6.092259 CCGTTCCCAAATGTAAGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
3154 6632 6.872020 CGTTCCCAAATGTAAGTCTTTCTAGA 59.128 38.462 0.00 0.00 0.00 2.43
3155 6633 7.063544 CGTTCCCAAATGTAAGTCTTTCTAGAG 59.936 40.741 0.00 0.00 0.00 2.43
3156 6634 7.792364 TCCCAAATGTAAGTCTTTCTAGAGA 57.208 36.000 0.00 0.00 0.00 3.10
3157 6635 8.380742 TCCCAAATGTAAGTCTTTCTAGAGAT 57.619 34.615 0.00 0.00 0.00 2.75
3158 6636 8.826765 TCCCAAATGTAAGTCTTTCTAGAGATT 58.173 33.333 0.00 0.00 0.00 2.40
3159 6637 9.103861 CCCAAATGTAAGTCTTTCTAGAGATTC 57.896 37.037 0.00 0.00 0.00 2.52
3160 6638 9.883142 CCAAATGTAAGTCTTTCTAGAGATTCT 57.117 33.333 0.00 0.00 0.00 2.40
3188 6666 6.741992 TGAACTACATACTGAGCAAAATGG 57.258 37.500 0.00 0.00 0.00 3.16
3189 6667 5.647658 TGAACTACATACTGAGCAAAATGGG 59.352 40.000 0.00 0.00 0.00 4.00
3190 6668 5.179452 ACTACATACTGAGCAAAATGGGT 57.821 39.130 0.00 0.00 0.00 4.51
3191 6669 4.943705 ACTACATACTGAGCAAAATGGGTG 59.056 41.667 0.00 0.00 0.00 4.61
3192 6670 4.032960 ACATACTGAGCAAAATGGGTGA 57.967 40.909 0.00 0.00 0.00 4.02
3193 6671 4.406456 ACATACTGAGCAAAATGGGTGAA 58.594 39.130 0.00 0.00 0.00 3.18
3194 6672 5.018809 ACATACTGAGCAAAATGGGTGAAT 58.981 37.500 0.00 0.00 0.00 2.57
3195 6673 5.126061 ACATACTGAGCAAAATGGGTGAATC 59.874 40.000 0.00 0.00 0.00 2.52
3196 6674 3.771216 ACTGAGCAAAATGGGTGAATCT 58.229 40.909 0.00 0.00 0.00 2.40
3197 6675 4.922206 ACTGAGCAAAATGGGTGAATCTA 58.078 39.130 0.00 0.00 0.00 1.98
3198 6676 4.702131 ACTGAGCAAAATGGGTGAATCTAC 59.298 41.667 0.00 0.00 0.00 2.59
3199 6677 4.661222 TGAGCAAAATGGGTGAATCTACA 58.339 39.130 0.00 0.00 0.00 2.74
3200 6678 4.458989 TGAGCAAAATGGGTGAATCTACAC 59.541 41.667 0.00 0.00 39.70 2.90
3201 6679 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
3202 6680 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
3203 6681 4.702131 GCAAAATGGGTGAATCTACACTCT 59.298 41.667 0.00 0.00 41.33 3.24
3204 6682 5.880332 GCAAAATGGGTGAATCTACACTCTA 59.120 40.000 0.00 0.00 41.33 2.43
3205 6683 6.374333 GCAAAATGGGTGAATCTACACTCTAA 59.626 38.462 0.00 0.00 41.33 2.10
3206 6684 7.094377 GCAAAATGGGTGAATCTACACTCTAAA 60.094 37.037 0.00 0.00 41.33 1.85
3207 6685 7.923414 AAATGGGTGAATCTACACTCTAAAC 57.077 36.000 0.00 0.00 41.33 2.01
3208 6686 6.875972 ATGGGTGAATCTACACTCTAAACT 57.124 37.500 0.00 0.00 41.33 2.66
3209 6687 6.681729 TGGGTGAATCTACACTCTAAACTT 57.318 37.500 0.00 0.00 41.33 2.66
3210 6688 7.074653 TGGGTGAATCTACACTCTAAACTTT 57.925 36.000 0.00 0.00 41.33 2.66
3211 6689 6.934645 TGGGTGAATCTACACTCTAAACTTTG 59.065 38.462 0.00 0.00 41.33 2.77
3212 6690 6.128254 GGGTGAATCTACACTCTAAACTTTGC 60.128 42.308 0.00 0.00 38.14 3.68
3213 6691 6.128254 GGTGAATCTACACTCTAAACTTTGCC 60.128 42.308 0.00 0.00 40.22 4.52
3214 6692 6.651225 GTGAATCTACACTCTAAACTTTGCCT 59.349 38.462 0.00 0.00 37.73 4.75
3215 6693 7.817962 GTGAATCTACACTCTAAACTTTGCCTA 59.182 37.037 0.00 0.00 37.73 3.93
3216 6694 8.540388 TGAATCTACACTCTAAACTTTGCCTAT 58.460 33.333 0.00 0.00 0.00 2.57
3223 6701 9.765795 ACACTCTAAACTTTGCCTATATACATC 57.234 33.333 0.00 0.00 0.00 3.06
3224 6702 9.988815 CACTCTAAACTTTGCCTATATACATCT 57.011 33.333 0.00 0.00 0.00 2.90
3225 6703 9.988815 ACTCTAAACTTTGCCTATATACATCTG 57.011 33.333 0.00 0.00 0.00 2.90
3226 6704 9.988815 CTCTAAACTTTGCCTATATACATCTGT 57.011 33.333 0.00 0.00 0.00 3.41
3276 6754 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3277 6755 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3278 6756 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3279 6757 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3280 6758 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3281 6759 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3282 6760 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3283 6761 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
3284 6762 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
3285 6763 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3286 6764 3.967467 AGGAACGGAGGGAGTATAAGA 57.033 47.619 0.00 0.00 0.00 2.10
3287 6765 4.472690 AGGAACGGAGGGAGTATAAGAT 57.527 45.455 0.00 0.00 0.00 2.40
3288 6766 5.595814 AGGAACGGAGGGAGTATAAGATA 57.404 43.478 0.00 0.00 0.00 1.98
3289 6767 6.155247 AGGAACGGAGGGAGTATAAGATAT 57.845 41.667 0.00 0.00 0.00 1.63
3290 6768 6.189133 AGGAACGGAGGGAGTATAAGATATC 58.811 44.000 0.00 0.00 0.00 1.63
3291 6769 6.011451 AGGAACGGAGGGAGTATAAGATATCT 60.011 42.308 0.00 0.00 0.00 1.98
3292 6770 6.319405 GGAACGGAGGGAGTATAAGATATCTC 59.681 46.154 5.51 0.00 0.00 2.75
3293 6771 5.430007 ACGGAGGGAGTATAAGATATCTCG 58.570 45.833 5.51 3.27 0.00 4.04
3294 6772 5.189342 ACGGAGGGAGTATAAGATATCTCGA 59.811 44.000 5.51 0.00 0.00 4.04
3322 6800 7.804129 CGTTCGGGAAATAATGTTACAAGAAAA 59.196 33.333 0.00 0.00 0.00 2.29
3413 7835 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
3417 7839 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3418 7840 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
3419 7841 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
3430 9542 0.666913 ATCAGAAAGATGCATGCGGC 59.333 50.000 14.09 7.38 45.13 6.53
3432 9544 1.378911 AGAAAGATGCATGCGGCCA 60.379 52.632 14.09 0.00 43.89 5.36
3433 9545 0.754217 AGAAAGATGCATGCGGCCAT 60.754 50.000 14.09 0.00 43.89 4.40
3435 9547 0.754217 AAAGATGCATGCGGCCATCT 60.754 50.000 14.09 12.55 43.89 2.90
3437 9549 0.109153 AGATGCATGCGGCCATCTTA 59.891 50.000 14.09 0.00 43.89 2.10
3439 9551 1.542915 GATGCATGCGGCCATCTTATT 59.457 47.619 14.09 0.00 43.89 1.40
3441 9553 2.580962 TGCATGCGGCCATCTTATTAA 58.419 42.857 14.09 0.00 43.89 1.40
3442 9554 2.293122 TGCATGCGGCCATCTTATTAAC 59.707 45.455 14.09 0.00 43.89 2.01
3443 9555 2.351738 GCATGCGGCCATCTTATTAACC 60.352 50.000 0.00 0.00 36.11 2.85
3444 9556 2.719531 TGCGGCCATCTTATTAACCA 57.280 45.000 2.24 0.00 0.00 3.67
3445 9557 3.006112 TGCGGCCATCTTATTAACCAA 57.994 42.857 2.24 0.00 0.00 3.67
3446 9558 3.357203 TGCGGCCATCTTATTAACCAAA 58.643 40.909 2.24 0.00 0.00 3.28
3447 9559 3.129638 TGCGGCCATCTTATTAACCAAAC 59.870 43.478 2.24 0.00 0.00 2.93
3448 9560 3.129638 GCGGCCATCTTATTAACCAAACA 59.870 43.478 2.24 0.00 0.00 2.83
3449 9561 4.202111 GCGGCCATCTTATTAACCAAACAT 60.202 41.667 2.24 0.00 0.00 2.71
3450 9562 5.519722 CGGCCATCTTATTAACCAAACATC 58.480 41.667 2.24 0.00 0.00 3.06
3451 9563 5.067153 CGGCCATCTTATTAACCAAACATCA 59.933 40.000 2.24 0.00 0.00 3.07
3452 9564 6.405286 CGGCCATCTTATTAACCAAACATCAA 60.405 38.462 2.24 0.00 0.00 2.57
3453 9565 7.327214 GGCCATCTTATTAACCAAACATCAAA 58.673 34.615 0.00 0.00 0.00 2.69
3454 9566 7.821846 GGCCATCTTATTAACCAAACATCAAAA 59.178 33.333 0.00 0.00 0.00 2.44
3455 9567 9.213799 GCCATCTTATTAACCAAACATCAAAAA 57.786 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.307121 CGTATTTCAGTTCTGAATACATCTCTT 57.693 33.333 14.67 0.00 0.00 2.85
22 23 8.470805 ACGTATTTCAGTTCTGAATACATCTCT 58.529 33.333 14.67 0.00 0.00 3.10
23 24 8.635877 ACGTATTTCAGTTCTGAATACATCTC 57.364 34.615 14.67 4.44 0.00 2.75
24 25 8.470805 AGACGTATTTCAGTTCTGAATACATCT 58.529 33.333 14.67 16.25 0.00 2.90
25 26 8.635877 AGACGTATTTCAGTTCTGAATACATC 57.364 34.615 14.67 14.85 0.00 3.06
26 27 9.737427 CTAGACGTATTTCAGTTCTGAATACAT 57.263 33.333 14.67 9.02 0.00 2.29
27 28 8.953313 TCTAGACGTATTTCAGTTCTGAATACA 58.047 33.333 14.67 2.64 0.00 2.29
28 29 9.953697 ATCTAGACGTATTTCAGTTCTGAATAC 57.046 33.333 14.67 15.56 0.00 1.89
29 30 9.952188 CATCTAGACGTATTTCAGTTCTGAATA 57.048 33.333 14.67 7.64 0.00 1.75
30 31 7.436673 GCATCTAGACGTATTTCAGTTCTGAAT 59.563 37.037 14.67 8.64 0.00 2.57
31 32 6.752351 GCATCTAGACGTATTTCAGTTCTGAA 59.248 38.462 10.67 10.67 0.00 3.02
32 33 6.127730 TGCATCTAGACGTATTTCAGTTCTGA 60.128 38.462 0.00 0.00 0.00 3.27
33 34 6.036470 TGCATCTAGACGTATTTCAGTTCTG 58.964 40.000 0.00 0.00 0.00 3.02
34 35 6.208988 TGCATCTAGACGTATTTCAGTTCT 57.791 37.500 0.00 0.00 0.00 3.01
35 36 6.920758 AGATGCATCTAGACGTATTTCAGTTC 59.079 38.462 27.73 0.00 34.85 3.01
36 37 6.810911 AGATGCATCTAGACGTATTTCAGTT 58.189 36.000 27.73 0.00 34.85 3.16
37 38 6.264292 AGAGATGCATCTAGACGTATTTCAGT 59.736 38.462 28.78 1.17 37.25 3.41
38 39 6.676950 AGAGATGCATCTAGACGTATTTCAG 58.323 40.000 28.78 0.00 37.25 3.02
39 40 6.641169 AGAGATGCATCTAGACGTATTTCA 57.359 37.500 28.78 0.00 37.25 2.69
40 41 7.938563 AAAGAGATGCATCTAGACGTATTTC 57.061 36.000 28.78 12.53 37.25 2.17
44 45 9.674068 AGATATAAAGAGATGCATCTAGACGTA 57.326 33.333 28.78 18.19 37.25 3.57
45 46 8.574251 AGATATAAAGAGATGCATCTAGACGT 57.426 34.615 28.78 16.75 37.25 4.34
70 71 9.497030 CGTCCGAAAATATTTGTCATCAAAATA 57.503 29.630 0.39 0.00 44.97 1.40
71 72 7.487829 CCGTCCGAAAATATTTGTCATCAAAAT 59.512 33.333 0.39 0.00 44.97 1.82
72 73 6.804295 CCGTCCGAAAATATTTGTCATCAAAA 59.196 34.615 0.39 0.00 44.97 2.44
73 74 6.149640 TCCGTCCGAAAATATTTGTCATCAAA 59.850 34.615 0.39 0.00 45.71 2.69
74 75 5.644206 TCCGTCCGAAAATATTTGTCATCAA 59.356 36.000 0.39 0.00 0.00 2.57
75 76 5.179533 TCCGTCCGAAAATATTTGTCATCA 58.820 37.500 0.39 0.00 0.00 3.07
76 77 5.277345 CCTCCGTCCGAAAATATTTGTCATC 60.277 44.000 0.39 0.00 0.00 2.92
77 78 4.574828 CCTCCGTCCGAAAATATTTGTCAT 59.425 41.667 0.39 0.00 0.00 3.06
78 79 3.936453 CCTCCGTCCGAAAATATTTGTCA 59.064 43.478 0.39 0.00 0.00 3.58
79 80 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
80 81 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
81 82 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
82 83 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
83 84 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
84 85 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
85 86 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
86 87 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
87 88 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
88 89 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
89 90 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
90 91 0.179000 GTAGTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
91 92 0.179936 AGTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
92 93 1.211457 TGAGTAGTACTCCCTCCGTCC 59.789 57.143 24.32 0.95 44.44 4.79
93 94 2.706339 TGAGTAGTACTCCCTCCGTC 57.294 55.000 24.32 1.89 44.44 4.79
94 95 3.053842 TGATTGAGTAGTACTCCCTCCGT 60.054 47.826 24.32 6.82 44.44 4.69
95 96 3.552875 TGATTGAGTAGTACTCCCTCCG 58.447 50.000 24.32 0.00 44.44 4.63
96 97 3.319689 GCTGATTGAGTAGTACTCCCTCC 59.680 52.174 24.32 12.91 44.44 4.30
97 98 3.319689 GGCTGATTGAGTAGTACTCCCTC 59.680 52.174 24.32 20.00 44.44 4.30
98 99 3.301274 GGCTGATTGAGTAGTACTCCCT 58.699 50.000 24.32 13.30 44.44 4.20
99 100 3.031736 TGGCTGATTGAGTAGTACTCCC 58.968 50.000 24.32 17.60 44.44 4.30
100 101 3.491792 GCTGGCTGATTGAGTAGTACTCC 60.492 52.174 24.32 11.86 44.44 3.85
101 102 3.712187 GCTGGCTGATTGAGTAGTACTC 58.288 50.000 21.35 21.35 45.26 2.59
102 103 2.099921 CGCTGGCTGATTGAGTAGTACT 59.900 50.000 1.37 1.37 0.00 2.73
103 104 2.464865 CGCTGGCTGATTGAGTAGTAC 58.535 52.381 0.00 0.00 0.00 2.73
108 109 1.744368 CTGCGCTGGCTGATTGAGT 60.744 57.895 9.73 0.00 40.22 3.41
161 162 3.199880 ACGGAACCAATGATCCATCTC 57.800 47.619 6.01 0.00 35.34 2.75
350 1508 8.260818 ACAGAATGAGCATACAGTAGTGTATTT 58.739 33.333 18.70 11.28 42.49 1.40
353 1511 6.377146 TCACAGAATGAGCATACAGTAGTGTA 59.623 38.462 12.74 12.74 40.55 2.90
415 1573 6.095580 GGACCCAAAAACCTTTAAAAATTGCA 59.904 34.615 0.00 0.00 0.00 4.08
416 1574 6.320164 AGGACCCAAAAACCTTTAAAAATTGC 59.680 34.615 0.00 0.00 0.00 3.56
417 1575 7.873719 AGGACCCAAAAACCTTTAAAAATTG 57.126 32.000 0.00 0.00 0.00 2.32
429 1588 4.760878 TGCACTTTAAAGGACCCAAAAAC 58.239 39.130 19.14 0.00 0.00 2.43
460 1619 8.072238 TCAATTTCGTCATATCAAATACGGAG 57.928 34.615 0.00 0.00 36.08 4.63
461 1620 8.426881 TTCAATTTCGTCATATCAAATACGGA 57.573 30.769 0.00 0.00 36.08 4.69
530 1689 0.703488 TGGGTCCTTCAATGCATCCA 59.297 50.000 0.00 0.00 0.00 3.41
539 1698 3.491766 ATAACTCCTCTGGGTCCTTCA 57.508 47.619 0.00 0.00 0.00 3.02
540 1699 3.519913 ACAATAACTCCTCTGGGTCCTTC 59.480 47.826 0.00 0.00 0.00 3.46
541 1700 3.519913 GACAATAACTCCTCTGGGTCCTT 59.480 47.826 0.00 0.00 0.00 3.36
542 1701 3.108376 GACAATAACTCCTCTGGGTCCT 58.892 50.000 0.00 0.00 0.00 3.85
543 1702 2.838202 TGACAATAACTCCTCTGGGTCC 59.162 50.000 0.00 0.00 0.00 4.46
544 1703 3.680196 GCTGACAATAACTCCTCTGGGTC 60.680 52.174 0.00 0.00 0.00 4.46
546 1705 2.503356 AGCTGACAATAACTCCTCTGGG 59.497 50.000 0.00 0.00 0.00 4.45
547 1706 3.902881 AGCTGACAATAACTCCTCTGG 57.097 47.619 0.00 0.00 0.00 3.86
561 1723 7.223777 CCTTCTTTTTATCTACTGCTAGCTGAC 59.776 40.741 26.29 0.00 0.00 3.51
567 2062 6.070194 ACCTGCCTTCTTTTTATCTACTGCTA 60.070 38.462 0.00 0.00 0.00 3.49
587 2082 2.687935 TCAGTGTTTGAAAAGGACCTGC 59.312 45.455 0.00 0.00 31.34 4.85
589 2084 5.163088 ACCTATCAGTGTTTGAAAAGGACCT 60.163 40.000 12.95 0.00 41.92 3.85
608 2103 7.348815 TGAGGATGAACAAATGATCAACCTAT 58.651 34.615 18.17 2.98 45.42 2.57
609 2104 6.720309 TGAGGATGAACAAATGATCAACCTA 58.280 36.000 18.17 8.04 45.42 3.08
697 3976 8.340443 ACAAGTCTAAAACAAGTAATTCGGAAC 58.660 33.333 0.00 0.00 0.00 3.62
698 3977 8.441312 ACAAGTCTAAAACAAGTAATTCGGAA 57.559 30.769 0.00 0.00 0.00 4.30
699 3978 7.929785 AGACAAGTCTAAAACAAGTAATTCGGA 59.070 33.333 0.00 0.00 38.35 4.55
700 3979 8.084590 AGACAAGTCTAAAACAAGTAATTCGG 57.915 34.615 0.00 0.00 38.35 4.30
707 3986 8.027771 CCGTATCTAGACAAGTCTAAAACAAGT 58.972 37.037 10.81 0.00 41.22 3.16
708 3987 8.242053 TCCGTATCTAGACAAGTCTAAAACAAG 58.758 37.037 10.81 1.06 41.22 3.16
709 3988 8.114331 TCCGTATCTAGACAAGTCTAAAACAA 57.886 34.615 10.81 0.28 41.22 2.83
711 3990 8.189460 ACATCCGTATCTAGACAAGTCTAAAAC 58.811 37.037 10.81 8.22 41.22 2.43
712 3991 8.289939 ACATCCGTATCTAGACAAGTCTAAAA 57.710 34.615 10.81 3.56 41.22 1.52
749 4028 9.221933 CTTAGACTTGTCTAGATACGGATGTAT 57.778 37.037 9.96 0.00 43.97 2.29
750 4029 8.427276 TCTTAGACTTGTCTAGATACGGATGTA 58.573 37.037 9.96 0.00 34.45 2.29
751 4030 7.227116 GTCTTAGACTTGTCTAGATACGGATGT 59.773 40.741 4.94 0.00 0.00 3.06
752 4031 7.226918 TGTCTTAGACTTGTCTAGATACGGATG 59.773 40.741 13.86 0.00 33.15 3.51
753 4032 7.281098 TGTCTTAGACTTGTCTAGATACGGAT 58.719 38.462 13.86 0.00 33.15 4.18
754 4033 6.647229 TGTCTTAGACTTGTCTAGATACGGA 58.353 40.000 13.86 0.00 33.15 4.69
755 4034 6.922247 TGTCTTAGACTTGTCTAGATACGG 57.078 41.667 13.86 0.00 33.15 4.02
756 4035 7.976826 ACTTGTCTTAGACTTGTCTAGATACG 58.023 38.462 13.86 0.00 33.15 3.06
763 4042 8.861086 TCTGAATTACTTGTCTTAGACTTGTCT 58.139 33.333 13.86 8.41 33.15 3.41
764 4043 9.477484 TTCTGAATTACTTGTCTTAGACTTGTC 57.523 33.333 13.86 2.72 33.15 3.18
765 4044 9.262358 GTTCTGAATTACTTGTCTTAGACTTGT 57.738 33.333 13.86 13.39 33.15 3.16
766 4045 8.428536 CGTTCTGAATTACTTGTCTTAGACTTG 58.571 37.037 13.86 8.49 33.15 3.16
767 4046 7.599245 CCGTTCTGAATTACTTGTCTTAGACTT 59.401 37.037 13.86 0.00 33.15 3.01
768 4047 7.039923 TCCGTTCTGAATTACTTGTCTTAGACT 60.040 37.037 13.86 0.00 33.15 3.24
769 4048 7.088905 TCCGTTCTGAATTACTTGTCTTAGAC 58.911 38.462 5.27 5.27 0.00 2.59
770 4049 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
771 4050 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
772 4051 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
773 4052 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
774 4053 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
775 4054 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
776 4055 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
777 4056 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
778 4057 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
779 4058 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
780 4059 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
781 4060 3.703052 GGTACTCCCTCCGTTCTGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
782 4061 2.500504 GGTACTCCCTCCGTTCTGAATT 59.499 50.000 0.00 0.00 0.00 2.17
783 4062 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57
784 4063 1.076677 AGGTACTCCCTCCGTTCTGAA 59.923 52.381 0.00 0.00 40.71 3.02
785 4064 0.702902 AGGTACTCCCTCCGTTCTGA 59.297 55.000 0.00 0.00 40.71 3.27
786 4065 3.284711 AGGTACTCCCTCCGTTCTG 57.715 57.895 0.00 0.00 40.71 3.02
804 4083 4.408821 GCATGCGTCCACCTGGGA 62.409 66.667 0.00 0.00 45.89 4.37
805 4084 4.720902 TGCATGCGTCCACCTGGG 62.721 66.667 14.09 0.00 35.41 4.45
806 4085 2.438975 ATGCATGCGTCCACCTGG 60.439 61.111 14.09 0.00 0.00 4.45
807 4086 2.767445 CCATGCATGCGTCCACCTG 61.767 63.158 21.69 0.10 0.00 4.00
841 4120 0.522286 CTACTGTGCGCTCTCTCGTG 60.522 60.000 9.73 0.00 0.00 4.35
852 4131 3.713288 TGTTGTGTACTGTCTACTGTGC 58.287 45.455 3.20 2.64 0.00 4.57
854 4133 4.802039 CGTTTGTTGTGTACTGTCTACTGT 59.198 41.667 0.00 0.00 0.00 3.55
855 4134 4.208460 CCGTTTGTTGTGTACTGTCTACTG 59.792 45.833 0.00 0.00 0.00 2.74
856 4135 4.098349 TCCGTTTGTTGTGTACTGTCTACT 59.902 41.667 0.00 0.00 0.00 2.57
857 4136 4.362279 TCCGTTTGTTGTGTACTGTCTAC 58.638 43.478 0.00 0.00 0.00 2.59
858 4137 4.500205 CCTCCGTTTGTTGTGTACTGTCTA 60.500 45.833 0.00 0.00 0.00 2.59
859 4138 3.454375 CTCCGTTTGTTGTGTACTGTCT 58.546 45.455 0.00 0.00 0.00 3.41
860 4139 2.542595 CCTCCGTTTGTTGTGTACTGTC 59.457 50.000 0.00 0.00 0.00 3.51
915 4241 3.933332 GGATGTTATATTACCGCTCTGGC 59.067 47.826 0.00 0.00 43.94 4.85
919 4245 4.553323 ACGTGGATGTTATATTACCGCTC 58.447 43.478 0.00 0.00 0.00 5.03
970 4304 0.306533 CGACCGGTGAAACTTTGGTG 59.693 55.000 14.63 0.00 37.04 4.17
986 4320 0.108329 ACCCATGTTGGTCGATCGAC 60.108 55.000 34.70 34.70 43.87 4.20
1138 4475 2.482333 CGTGGAGGCGGTAGAGGAG 61.482 68.421 0.00 0.00 0.00 3.69
1216 4565 1.300233 CGAGCGGGTAGAAGATGGC 60.300 63.158 0.00 0.00 0.00 4.40
1219 4568 2.846652 CGGCGAGCGGGTAGAAGAT 61.847 63.158 0.00 0.00 0.00 2.40
1301 4656 2.358247 CGGTTGTGAAGGGGACGG 60.358 66.667 0.00 0.00 0.00 4.79
1602 4960 4.444957 AGGCCCCTGGGATCAGCT 62.445 66.667 16.20 0.00 39.61 4.24
1734 5100 0.545071 TGATGGCAGTGAGGACCTCA 60.545 55.000 20.74 20.74 38.25 3.86
1743 5109 2.743752 CGCGTCCTTGATGGCAGTG 61.744 63.158 0.00 0.00 35.26 3.66
1872 5247 3.064682 GGATGTGGGTTGTTTTTGTTTGC 59.935 43.478 0.00 0.00 0.00 3.68
1891 5266 2.092914 GGTGATCCACGGAGAAAAGGAT 60.093 50.000 0.00 0.00 43.29 3.24
2046 5421 2.607750 TCTTCCTCCAGCGCCCTT 60.608 61.111 2.29 0.00 0.00 3.95
2049 5424 3.394836 ACCTCTTCCTCCAGCGCC 61.395 66.667 2.29 0.00 0.00 6.53
2093 5468 2.341543 CCCTCTCGATGCATCCGG 59.658 66.667 20.87 14.82 0.00 5.14
2124 5499 0.039256 CGAACACCATGCCAACCTTG 60.039 55.000 0.00 0.00 0.00 3.61
2129 5504 1.152860 ACCACGAACACCATGCCAA 60.153 52.632 0.00 0.00 0.00 4.52
2130 5505 1.896183 CACCACGAACACCATGCCA 60.896 57.895 0.00 0.00 0.00 4.92
2165 5540 3.250744 CCAAAGTCGATGTCATACACGT 58.749 45.455 0.00 0.00 0.00 4.49
2200 5575 2.751436 CATGGCCACCACCTTCCG 60.751 66.667 8.16 0.00 35.80 4.30
2201 5576 1.678970 GACATGGCCACCACCTTCC 60.679 63.158 8.16 0.00 35.80 3.46
2346 5728 3.700538 TGCCTTATTCTTGTTGCATCCT 58.299 40.909 0.00 0.00 0.00 3.24
2355 5737 9.334947 TGAAAATAGAGAGATGCCTTATTCTTG 57.665 33.333 0.00 0.00 0.00 3.02
2369 5751 8.171840 GGAACATCGACTTTTGAAAATAGAGAG 58.828 37.037 0.00 0.00 0.00 3.20
2375 5757 5.222631 GCTGGAACATCGACTTTTGAAAAT 58.777 37.500 0.00 0.00 38.20 1.82
2418 5827 2.226437 CGAACATGAAAGGACCTTGGTG 59.774 50.000 7.72 9.55 0.00 4.17
2576 5987 8.849168 TCAACCTATGCAATACCAAATATCAAG 58.151 33.333 0.00 0.00 0.00 3.02
2656 6076 7.935520 TCTGTTTCAAAATACAGTGCATGTTA 58.064 30.769 7.02 0.00 39.96 2.41
2659 6079 5.860182 CCTCTGTTTCAAAATACAGTGCATG 59.140 40.000 0.00 0.00 41.87 4.06
2674 6094 5.531287 ACATAAGTGTTGTTCCCTCTGTTTC 59.469 40.000 0.00 0.00 34.01 2.78
2686 6106 8.220021 TCCATGAGGGCTAACATAAGTGTTGT 62.220 42.308 0.00 0.00 41.90 3.32
2692 6112 6.118170 CCATATCCATGAGGGCTAACATAAG 58.882 44.000 0.00 0.00 36.21 1.73
2718 6138 7.467539 CGAATTAACAAAGTTTACAGTGGTGGA 60.468 37.037 0.00 0.00 0.00 4.02
2734 6154 6.734137 ACAGCTTGAACAATCGAATTAACAA 58.266 32.000 0.00 0.00 0.00 2.83
2735 6155 6.312399 ACAGCTTGAACAATCGAATTAACA 57.688 33.333 0.00 0.00 0.00 2.41
2736 6156 6.398935 GCAACAGCTTGAACAATCGAATTAAC 60.399 38.462 0.00 0.00 0.00 2.01
2737 6157 5.629020 GCAACAGCTTGAACAATCGAATTAA 59.371 36.000 0.00 0.00 0.00 1.40
2738 6158 5.153513 GCAACAGCTTGAACAATCGAATTA 58.846 37.500 0.00 0.00 0.00 1.40
2739 6159 3.983344 GCAACAGCTTGAACAATCGAATT 59.017 39.130 0.00 0.00 0.00 2.17
2740 6160 3.004629 TGCAACAGCTTGAACAATCGAAT 59.995 39.130 0.00 0.00 0.00 3.34
2741 6161 2.357323 TGCAACAGCTTGAACAATCGAA 59.643 40.909 0.00 0.00 0.00 3.71
2742 6162 1.946081 TGCAACAGCTTGAACAATCGA 59.054 42.857 0.00 0.00 0.00 3.59
2743 6163 2.046313 GTGCAACAGCTTGAACAATCG 58.954 47.619 0.00 0.00 36.07 3.34
2744 6164 3.303406 GAGTGCAACAGCTTGAACAATC 58.697 45.455 0.00 0.00 38.32 2.67
2745 6165 2.035066 GGAGTGCAACAGCTTGAACAAT 59.965 45.455 0.00 0.00 38.32 2.71
2746 6166 1.405105 GGAGTGCAACAGCTTGAACAA 59.595 47.619 0.00 0.00 38.32 2.83
2747 6167 1.024271 GGAGTGCAACAGCTTGAACA 58.976 50.000 0.00 0.00 38.32 3.18
2748 6168 1.312815 AGGAGTGCAACAGCTTGAAC 58.687 50.000 0.00 0.00 41.43 3.18
2749 6169 2.057137 AAGGAGTGCAACAGCTTGAA 57.943 45.000 0.00 0.00 41.43 2.69
2750 6170 2.928801 TAAGGAGTGCAACAGCTTGA 57.071 45.000 0.00 0.00 41.43 3.02
2751 6171 4.479619 GAATTAAGGAGTGCAACAGCTTG 58.520 43.478 0.00 0.00 41.43 4.01
2752 6172 3.189287 CGAATTAAGGAGTGCAACAGCTT 59.811 43.478 0.00 0.00 41.43 3.74
2753 6173 2.744202 CGAATTAAGGAGTGCAACAGCT 59.256 45.455 0.00 0.00 41.43 4.24
2754 6174 2.742053 TCGAATTAAGGAGTGCAACAGC 59.258 45.455 0.00 0.00 41.43 4.40
2755 6175 5.106555 ACAATCGAATTAAGGAGTGCAACAG 60.107 40.000 0.00 0.00 41.43 3.16
2756 6176 4.759693 ACAATCGAATTAAGGAGTGCAACA 59.240 37.500 0.00 0.00 41.43 3.33
2757 6177 5.296813 ACAATCGAATTAAGGAGTGCAAC 57.703 39.130 0.00 0.00 31.89 4.17
2758 6178 5.471797 TGAACAATCGAATTAAGGAGTGCAA 59.528 36.000 0.00 0.00 31.89 4.08
2759 6179 5.000591 TGAACAATCGAATTAAGGAGTGCA 58.999 37.500 0.00 0.00 31.89 4.57
2760 6180 5.545658 TGAACAATCGAATTAAGGAGTGC 57.454 39.130 0.00 0.00 31.89 4.40
2761 6181 6.024049 GCTTGAACAATCGAATTAAGGAGTG 58.976 40.000 0.00 1.09 34.66 3.51
2762 6182 5.940470 AGCTTGAACAATCGAATTAAGGAGT 59.060 36.000 0.00 0.00 0.00 3.85
2763 6183 6.128172 ACAGCTTGAACAATCGAATTAAGGAG 60.128 38.462 0.00 0.00 0.00 3.69
2779 6199 2.057137 AAGGAGTGCAACAGCTTGAA 57.943 45.000 0.00 0.00 41.43 2.69
2796 6216 8.964420 ATTTTGATACACGACCACAAATTAAG 57.036 30.769 0.00 0.00 32.05 1.85
2810 6230 6.615088 AGCATGACAGTTGATTTTGATACAC 58.385 36.000 0.00 0.00 0.00 2.90
2852 6272 5.066593 AGTGAGTTGAATCAAAAGGGTCTC 58.933 41.667 0.00 0.00 0.00 3.36
2857 6277 9.918630 ATTAATTGAGTGAGTTGAATCAAAAGG 57.081 29.630 0.00 0.00 35.47 3.11
2862 6282 9.288576 ACAAGATTAATTGAGTGAGTTGAATCA 57.711 29.630 0.00 0.00 34.20 2.57
2890 6310 7.083062 TCATTAGCTTCATATGTCCATCCTT 57.917 36.000 1.90 0.00 0.00 3.36
3049 6512 7.504238 CCAGGTGTATATGTTTTATGGCCTTTA 59.496 37.037 3.32 0.00 0.00 1.85
3050 6513 6.323739 CCAGGTGTATATGTTTTATGGCCTTT 59.676 38.462 3.32 0.00 0.00 3.11
3051 6514 5.833131 CCAGGTGTATATGTTTTATGGCCTT 59.167 40.000 3.32 0.00 0.00 4.35
3052 6515 5.385198 CCAGGTGTATATGTTTTATGGCCT 58.615 41.667 3.32 0.00 0.00 5.19
3054 6517 5.137551 ACCCAGGTGTATATGTTTTATGGC 58.862 41.667 0.00 0.00 0.00 4.40
3055 6518 7.514721 ACTACCCAGGTGTATATGTTTTATGG 58.485 38.462 0.00 0.00 0.00 2.74
3056 6519 8.836413 CAACTACCCAGGTGTATATGTTTTATG 58.164 37.037 0.00 0.00 34.53 1.90
3057 6520 8.774183 TCAACTACCCAGGTGTATATGTTTTAT 58.226 33.333 0.00 0.00 40.64 1.40
3058 6521 8.148437 TCAACTACCCAGGTGTATATGTTTTA 57.852 34.615 0.00 0.00 40.64 1.52
3059 6522 7.023171 TCAACTACCCAGGTGTATATGTTTT 57.977 36.000 0.00 0.00 40.64 2.43
3060 6523 6.630203 TCAACTACCCAGGTGTATATGTTT 57.370 37.500 0.00 0.00 40.64 2.83
3061 6524 6.630203 TTCAACTACCCAGGTGTATATGTT 57.370 37.500 0.00 0.00 40.64 2.71
3062 6525 6.385759 TGATTCAACTACCCAGGTGTATATGT 59.614 38.462 0.00 0.00 40.64 2.29
3064 6527 7.072454 ACATGATTCAACTACCCAGGTGTATAT 59.928 37.037 0.00 0.00 40.64 0.86
3065 6528 6.385759 ACATGATTCAACTACCCAGGTGTATA 59.614 38.462 0.00 0.00 40.64 1.47
3067 6530 4.534500 ACATGATTCAACTACCCAGGTGTA 59.466 41.667 0.00 0.00 40.64 2.90
3068 6531 3.330701 ACATGATTCAACTACCCAGGTGT 59.669 43.478 0.00 0.00 40.64 4.16
3069 6532 3.955471 ACATGATTCAACTACCCAGGTG 58.045 45.455 0.00 0.00 41.21 4.00
3076 6554 9.994432 CATTTCCTAGAAACATGATTCAACTAC 57.006 33.333 16.93 0.00 0.00 2.73
3119 6597 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3122 6600 0.328258 ACATTTGGGAACGGAGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
3123 6601 1.659022 TACATTTGGGAACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
3124 6602 2.290705 ACTTACATTTGGGAACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3125 6603 3.007635 GACTTACATTTGGGAACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3126 6604 3.939066 AGACTTACATTTGGGAACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3128 6606 4.760204 AGAAAGACTTACATTTGGGAACGG 59.240 41.667 0.00 0.00 0.00 4.44
3130 6608 8.095169 TCTCTAGAAAGACTTACATTTGGGAAC 58.905 37.037 0.00 0.00 0.00 3.62
3131 6609 8.202461 TCTCTAGAAAGACTTACATTTGGGAA 57.798 34.615 0.00 0.00 0.00 3.97
3132 6610 7.792364 TCTCTAGAAAGACTTACATTTGGGA 57.208 36.000 0.00 0.00 0.00 4.37
3133 6611 9.103861 GAATCTCTAGAAAGACTTACATTTGGG 57.896 37.037 0.00 0.00 0.00 4.12
3134 6612 9.883142 AGAATCTCTAGAAAGACTTACATTTGG 57.117 33.333 0.00 0.00 0.00 3.28
3162 6640 9.060347 CCATTTTGCTCAGTATGTAGTTCATAT 57.940 33.333 0.00 0.00 40.54 1.78
3163 6641 7.498900 CCCATTTTGCTCAGTATGTAGTTCATA 59.501 37.037 0.00 0.00 37.91 2.15
3164 6642 6.319658 CCCATTTTGCTCAGTATGTAGTTCAT 59.680 38.462 0.00 0.00 40.25 2.57
3165 6643 5.647658 CCCATTTTGCTCAGTATGTAGTTCA 59.352 40.000 0.00 0.00 37.40 3.18
3166 6644 5.648092 ACCCATTTTGCTCAGTATGTAGTTC 59.352 40.000 0.00 0.00 37.40 3.01
3167 6645 5.415701 CACCCATTTTGCTCAGTATGTAGTT 59.584 40.000 0.00 0.00 37.40 2.24
3168 6646 4.943705 CACCCATTTTGCTCAGTATGTAGT 59.056 41.667 0.00 0.00 37.40 2.73
3169 6647 5.185454 TCACCCATTTTGCTCAGTATGTAG 58.815 41.667 0.00 0.00 37.40 2.74
3170 6648 5.172687 TCACCCATTTTGCTCAGTATGTA 57.827 39.130 0.00 0.00 37.40 2.29
3171 6649 4.032960 TCACCCATTTTGCTCAGTATGT 57.967 40.909 0.00 0.00 37.40 2.29
3172 6650 5.359009 AGATTCACCCATTTTGCTCAGTATG 59.641 40.000 0.00 0.00 37.54 2.39
3173 6651 5.513233 AGATTCACCCATTTTGCTCAGTAT 58.487 37.500 0.00 0.00 0.00 2.12
3174 6652 4.922206 AGATTCACCCATTTTGCTCAGTA 58.078 39.130 0.00 0.00 0.00 2.74
3175 6653 3.771216 AGATTCACCCATTTTGCTCAGT 58.229 40.909 0.00 0.00 0.00 3.41
3176 6654 4.701651 TGTAGATTCACCCATTTTGCTCAG 59.298 41.667 0.00 0.00 0.00 3.35
3177 6655 4.458989 GTGTAGATTCACCCATTTTGCTCA 59.541 41.667 0.00 0.00 32.81 4.26
3178 6656 4.702131 AGTGTAGATTCACCCATTTTGCTC 59.298 41.667 0.00 0.00 38.91 4.26
3179 6657 4.666512 AGTGTAGATTCACCCATTTTGCT 58.333 39.130 0.00 0.00 38.91 3.91
3180 6658 4.702131 AGAGTGTAGATTCACCCATTTTGC 59.298 41.667 0.00 0.00 38.91 3.68
3181 6659 7.921786 TTAGAGTGTAGATTCACCCATTTTG 57.078 36.000 0.00 0.00 38.91 2.44
3182 6660 8.164070 AGTTTAGAGTGTAGATTCACCCATTTT 58.836 33.333 0.00 0.00 38.91 1.82
3183 6661 7.690256 AGTTTAGAGTGTAGATTCACCCATTT 58.310 34.615 0.00 0.00 38.91 2.32
3184 6662 7.259088 AGTTTAGAGTGTAGATTCACCCATT 57.741 36.000 0.00 0.00 38.91 3.16
3185 6663 6.875972 AGTTTAGAGTGTAGATTCACCCAT 57.124 37.500 0.00 0.00 38.91 4.00
3186 6664 6.681729 AAGTTTAGAGTGTAGATTCACCCA 57.318 37.500 0.00 0.00 38.91 4.51
3187 6665 6.128254 GCAAAGTTTAGAGTGTAGATTCACCC 60.128 42.308 0.00 0.00 38.91 4.61
3188 6666 6.128254 GGCAAAGTTTAGAGTGTAGATTCACC 60.128 42.308 0.00 0.00 38.91 4.02
3189 6667 6.651225 AGGCAAAGTTTAGAGTGTAGATTCAC 59.349 38.462 0.00 0.00 38.46 3.18
3190 6668 6.769512 AGGCAAAGTTTAGAGTGTAGATTCA 58.230 36.000 0.00 0.00 0.00 2.57
3191 6669 8.950208 ATAGGCAAAGTTTAGAGTGTAGATTC 57.050 34.615 0.00 0.00 0.00 2.52
3197 6675 9.765795 GATGTATATAGGCAAAGTTTAGAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
3198 6676 9.988815 AGATGTATATAGGCAAAGTTTAGAGTG 57.011 33.333 0.00 0.00 0.00 3.51
3199 6677 9.988815 CAGATGTATATAGGCAAAGTTTAGAGT 57.011 33.333 0.00 0.00 0.00 3.24
3200 6678 9.988815 ACAGATGTATATAGGCAAAGTTTAGAG 57.011 33.333 0.00 0.00 0.00 2.43
3209 6687 8.967918 GGACTACATACAGATGTATATAGGCAA 58.032 37.037 20.40 0.00 44.12 4.52
3210 6688 8.113462 TGGACTACATACAGATGTATATAGGCA 58.887 37.037 20.40 8.48 44.12 4.75
3211 6689 8.521170 TGGACTACATACAGATGTATATAGGC 57.479 38.462 17.99 15.88 45.42 3.93
3250 6728 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3251 6729 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3252 6730 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3253 6731 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3254 6732 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3255 6733 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3256 6734 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3257 6735 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3258 6736 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
3259 6737 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
3260 6738 8.175431 TCTTATACTCCCTCCGTTCCTAAATAT 58.825 37.037 0.00 0.00 0.00 1.28
3261 6739 7.529555 TCTTATACTCCCTCCGTTCCTAAATA 58.470 38.462 0.00 0.00 0.00 1.40
3262 6740 6.379579 TCTTATACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
3263 6741 5.769835 TCTTATACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
3264 6742 5.393068 TCTTATACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
3265 6743 5.595814 ATCTTATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
3266 6744 3.967467 TCTTATACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
3267 6745 6.189133 AGATATCTTATACTCCCTCCGTTCC 58.811 44.000 0.00 0.00 0.00 3.62
3268 6746 6.037391 CGAGATATCTTATACTCCCTCCGTTC 59.963 46.154 6.70 0.00 0.00 3.95
3269 6747 5.881443 CGAGATATCTTATACTCCCTCCGTT 59.119 44.000 6.70 0.00 0.00 4.44
3270 6748 5.189342 TCGAGATATCTTATACTCCCTCCGT 59.811 44.000 6.70 0.00 0.00 4.69
3271 6749 5.672503 TCGAGATATCTTATACTCCCTCCG 58.327 45.833 6.70 1.39 0.00 4.63
3272 6750 6.425721 CGATCGAGATATCTTATACTCCCTCC 59.574 46.154 10.26 0.00 0.00 4.30
3273 6751 6.987992 ACGATCGAGATATCTTATACTCCCTC 59.012 42.308 24.34 0.00 0.00 4.30
3274 6752 6.891388 ACGATCGAGATATCTTATACTCCCT 58.109 40.000 24.34 0.00 0.00 4.20
3275 6753 7.556733 AACGATCGAGATATCTTATACTCCC 57.443 40.000 24.34 0.00 0.00 4.30
3293 6771 6.592798 TGTAACATTATTTCCCGAACGATC 57.407 37.500 0.00 0.00 0.00 3.69
3294 6772 6.819649 TCTTGTAACATTATTTCCCGAACGAT 59.180 34.615 0.00 0.00 0.00 3.73
3322 6800 6.962182 TGATGGGTAGTTCAGAAATTGATCT 58.038 36.000 0.00 0.00 38.89 2.75
3352 6830 3.322828 GCACTTTCGTGGAGGGGTATATA 59.677 47.826 0.00 0.00 41.51 0.86
3354 6832 1.483415 GCACTTTCGTGGAGGGGTATA 59.517 52.381 0.00 0.00 41.51 1.47
3355 6833 0.252197 GCACTTTCGTGGAGGGGTAT 59.748 55.000 0.00 0.00 41.51 2.73
3356 6834 1.122632 TGCACTTTCGTGGAGGGGTA 61.123 55.000 0.00 0.00 41.51 3.69
3357 6835 1.779061 ATGCACTTTCGTGGAGGGGT 61.779 55.000 0.00 0.00 44.90 4.95
3358 6836 0.609131 AATGCACTTTCGTGGAGGGG 60.609 55.000 0.00 0.00 44.90 4.79
3396 7818 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
3401 7823 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
3402 7824 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
3411 7833 0.666913 GCCGCATGCATCTTTCTGAT 59.333 50.000 19.57 0.00 40.77 2.90
3413 7835 1.065273 GGCCGCATGCATCTTTCTG 59.935 57.895 19.57 0.00 43.89 3.02
3414 7836 0.754217 ATGGCCGCATGCATCTTTCT 60.754 50.000 19.57 0.00 43.89 2.52
3417 7839 0.754217 AAGATGGCCGCATGCATCTT 60.754 50.000 19.84 19.84 43.89 2.40
3418 7840 0.109153 TAAGATGGCCGCATGCATCT 59.891 50.000 19.57 14.94 43.89 2.90
3419 7841 1.171308 ATAAGATGGCCGCATGCATC 58.829 50.000 19.57 12.80 43.89 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.