Multiple sequence alignment - TraesCS4B01G292500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G292500 chr4B 100.000 4368 0 0 1 4368 578037188 578041555 0.000000e+00 8067.0
1 TraesCS4B01G292500 chr4B 87.248 149 11 5 3986 4128 417144711 417144857 3.500000e-36 163.0
2 TraesCS4B01G292500 chr4B 86.667 150 15 2 3986 4130 659677304 659677453 1.260000e-35 161.0
3 TraesCS4B01G292500 chr4B 91.089 101 6 3 3639 3737 107553523 107553622 2.740000e-27 134.0
4 TraesCS4B01G292500 chr4B 97.778 45 0 1 3820 3863 578040966 578041010 4.680000e-10 76.8
5 TraesCS4B01G292500 chr4B 97.778 45 0 1 3779 3823 578041007 578041050 4.680000e-10 76.8
6 TraesCS4B01G292500 chr4D 95.293 2974 101 13 709 3654 462840629 462837667 0.000000e+00 4680.0
7 TraesCS4B01G292500 chr4D 82.965 452 41 19 1 449 462841413 462840995 4.120000e-100 375.0
8 TraesCS4B01G292500 chr4D 95.545 202 7 1 463 662 462840830 462840629 5.450000e-84 322.0
9 TraesCS4B01G292500 chr4D 86.093 151 15 5 3986 4130 457524919 457524769 1.630000e-34 158.0
10 TraesCS4B01G292500 chr4A 89.345 3679 275 66 1 3654 6893366 6889780 0.000000e+00 4514.0
11 TraesCS4B01G292500 chr4A 91.556 225 18 1 4145 4368 6889567 6889343 4.240000e-80 309.0
12 TraesCS4B01G292500 chr4A 86.486 148 14 4 3986 4127 11073480 11073627 1.630000e-34 158.0
13 TraesCS4B01G292500 chr4A 86.486 148 14 5 3986 4127 491447012 491447159 1.630000e-34 158.0
14 TraesCS4B01G292500 chr4A 94.444 90 4 1 3649 3738 464687277 464687365 2.120000e-28 137.0
15 TraesCS4B01G292500 chr7B 86.041 437 48 11 1573 2005 741716488 741716061 1.430000e-124 457.0
16 TraesCS4B01G292500 chr7B 83.969 262 39 2 2052 2311 741687911 741687651 9.380000e-62 248.0
17 TraesCS4B01G292500 chr7B 94.624 93 4 1 3648 3740 661996389 661996480 4.550000e-30 143.0
18 TraesCS4B01G292500 chr7A 84.897 437 53 11 1573 2005 731965218 731965645 3.120000e-116 429.0
19 TraesCS4B01G292500 chr7A 87.248 149 13 1 3986 4128 652696547 652696399 9.720000e-37 165.0
20 TraesCS4B01G292500 chr7D 84.354 441 53 14 1568 2005 634409212 634408785 6.760000e-113 418.0
21 TraesCS4B01G292500 chr7D 94.017 117 7 0 4012 4128 334407983 334407867 1.250000e-40 178.0
22 TraesCS4B01G292500 chr1B 87.248 149 13 1 3986 4128 4460280 4460132 9.720000e-37 165.0
23 TraesCS4B01G292500 chr1B 96.629 89 2 1 3652 3740 129095888 129095801 3.520000e-31 147.0
24 TraesCS4B01G292500 chr1B 92.708 96 5 1 3644 3737 663609583 663609678 2.120000e-28 137.0
25 TraesCS4B01G292500 chr2B 88.235 136 15 1 3985 4120 217267966 217268100 1.260000e-35 161.0
26 TraesCS4B01G292500 chr5D 92.708 96 5 2 3646 3740 522111422 522111516 2.120000e-28 137.0
27 TraesCS4B01G292500 chr3B 95.402 87 3 1 3651 3737 132527384 132527299 2.120000e-28 137.0
28 TraesCS4B01G292500 chr6A 91.089 101 6 3 3643 3741 101296074 101295975 2.740000e-27 134.0
29 TraesCS4B01G292500 chr6B 93.258 89 5 1 3649 3737 403688767 403688680 3.550000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G292500 chr4B 578037188 578041555 4367 False 2740.200000 8067 98.518667 1 4368 3 chr4B.!!$F4 4367
1 TraesCS4B01G292500 chr4D 462837667 462841413 3746 True 1792.333333 4680 91.267667 1 3654 3 chr4D.!!$R2 3653
2 TraesCS4B01G292500 chr4A 6889343 6893366 4023 True 2411.500000 4514 90.450500 1 4368 2 chr4A.!!$R1 4367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 193 0.036483 ATTTTTGGGCGCAATGTCCC 60.036 50.000 17.68 0.0 43.96 4.46 F
932 1090 0.618458 GGCAGATAGTTGGGTGTCCA 59.382 55.000 0.00 0.0 42.25 4.02 F
939 1097 0.923358 AGTTGGGTGTCCAGTTCCAA 59.077 50.000 0.00 0.0 45.04 3.53 F
2831 2997 1.003580 CTTGCAGTCCCATAGTGGTGT 59.996 52.381 0.00 0.0 35.17 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2192 1.136611 CAAAGTCTTTCGCGACGGAAG 60.137 52.381 9.15 10.87 43.13 3.46 R
2556 2721 3.370978 CCAATAACCACTAGAAGTGCACG 59.629 47.826 12.01 0.00 44.63 5.34 R
2927 3093 3.804036 TGACTCCACAAAGTAACACCAG 58.196 45.455 0.00 0.00 0.00 4.00 R
4044 4250 0.109873 CGTTGTCGGTCTCGCTAGTT 60.110 55.000 0.00 0.00 36.13 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.787249 CGTTGCTTGATCTGCCCG 59.213 61.111 8.39 7.21 0.00 6.13
19 20 2.045045 TTGCTTGATCTGCCCGGG 60.045 61.111 19.09 19.09 0.00 5.73
21 22 2.514824 GCTTGATCTGCCCGGGTC 60.515 66.667 24.63 15.35 0.00 4.46
22 23 2.202932 CTTGATCTGCCCGGGTCG 60.203 66.667 24.63 13.80 0.00 4.79
23 24 2.682136 TTGATCTGCCCGGGTCGA 60.682 61.111 24.63 19.04 0.00 4.20
24 25 2.032860 CTTGATCTGCCCGGGTCGAT 62.033 60.000 24.63 22.93 0.00 3.59
26 27 1.595382 GATCTGCCCGGGTCGATTG 60.595 63.158 24.63 6.28 0.00 2.67
27 28 3.757248 ATCTGCCCGGGTCGATTGC 62.757 63.158 24.63 5.93 0.00 3.56
40 43 1.893062 GATTGCTTCCCTGGGTTGC 59.107 57.895 13.56 17.63 0.00 4.17
61 64 3.060895 GCGATTTGGTTTCGTAGACTGAG 59.939 47.826 0.00 0.00 38.81 3.35
62 65 3.060895 CGATTTGGTTTCGTAGACTGAGC 59.939 47.826 0.00 0.00 34.32 4.26
91 94 0.601311 GATCCGAGAATCTTGGGCGG 60.601 60.000 16.18 9.07 43.11 6.13
93 96 2.731571 CCGAGAATCTTGGGCGGGA 61.732 63.158 8.72 0.00 38.40 5.14
96 99 1.598882 GAGAATCTTGGGCGGGATTC 58.401 55.000 13.84 13.84 44.58 2.52
108 111 2.897969 GGCGGGATTCAGTAGGATCTTA 59.102 50.000 0.00 0.00 0.00 2.10
109 112 3.515901 GGCGGGATTCAGTAGGATCTTAT 59.484 47.826 0.00 0.00 0.00 1.73
136 139 4.887655 GGGATCAAACCTTATTGGAACGAT 59.112 41.667 0.00 0.00 39.71 3.73
137 140 5.008712 GGGATCAAACCTTATTGGAACGATC 59.991 44.000 0.00 0.00 39.71 3.69
152 155 0.318784 CGATCGATCGTCCCCCTTTC 60.319 60.000 33.95 1.92 44.74 2.62
161 164 0.621082 GTCCCCCTTTCTTAGCTGCT 59.379 55.000 7.57 7.57 0.00 4.24
189 192 2.663826 TATTTTTGGGCGCAATGTCC 57.336 45.000 17.68 0.01 45.24 4.02
190 193 0.036483 ATTTTTGGGCGCAATGTCCC 60.036 50.000 17.68 0.00 43.96 4.46
191 194 2.427540 TTTTTGGGCGCAATGTCCCG 62.428 55.000 17.68 0.00 43.96 5.14
197 200 1.062525 GCGCAATGTCCCGATTGTC 59.937 57.895 0.30 0.00 35.98 3.18
226 229 2.142356 TTGGGTTGATGCCATACAGG 57.858 50.000 0.00 0.00 41.84 4.00
240 243 3.486383 CATACAGGCCCATTCGGTAATT 58.514 45.455 0.00 0.00 0.00 1.40
241 244 4.505918 CCATACAGGCCCATTCGGTAATTA 60.506 45.833 0.00 0.00 0.00 1.40
255 258 9.009327 CATTCGGTAATTAGCTAATGTGTTTTG 57.991 33.333 23.58 8.84 34.30 2.44
290 293 3.499048 GCAGAATTTGATGCTGAGTGTG 58.501 45.455 0.01 0.00 39.38 3.82
405 408 3.567478 AGATAAAGGGCACATCACTCC 57.433 47.619 0.00 0.00 0.00 3.85
455 458 7.074653 TCCTGTGTTTTAGTATCACTTCCTT 57.925 36.000 0.00 0.00 33.82 3.36
555 710 3.974871 TTTAAGCGGTTTCACCACTTC 57.025 42.857 4.64 0.00 39.66 3.01
556 711 1.886886 TAAGCGGTTTCACCACTTCC 58.113 50.000 4.64 0.00 39.66 3.46
681 838 4.482386 CAAAGTGGAAACATGATGCAGAG 58.518 43.478 0.00 0.00 46.14 3.35
685 842 3.128242 GTGGAAACATGATGCAGAGAAGG 59.872 47.826 0.00 0.00 46.14 3.46
703 860 9.551734 CAGAGAAGGAACATATGATATGTTTGA 57.448 33.333 26.28 0.00 41.76 2.69
741 898 2.930040 GTGCATACACGTAGCAATCACT 59.070 45.455 5.85 0.00 40.35 3.41
783 940 6.603599 GGATCACCTTAAACTTGCTATTCCTT 59.396 38.462 0.00 0.00 0.00 3.36
932 1090 0.618458 GGCAGATAGTTGGGTGTCCA 59.382 55.000 0.00 0.00 42.25 4.02
939 1097 0.923358 AGTTGGGTGTCCAGTTCCAA 59.077 50.000 0.00 0.00 45.04 3.53
958 1116 7.724061 AGTTCCAAGTAATCCTGTATGTTGTTT 59.276 33.333 0.00 0.00 0.00 2.83
984 1142 8.610369 TGGTGCCATATCATTAATCCAGTATAA 58.390 33.333 0.00 0.00 0.00 0.98
1101 1261 2.426738 CCAAGCTTCAACCACAAAGTCA 59.573 45.455 0.00 0.00 0.00 3.41
1285 1445 4.142026 ACAAGGTAAGTTGCCAAAAGTTCC 60.142 41.667 12.91 0.00 0.00 3.62
1529 1689 6.781507 ACAGTACTAGTTTTCTCTGGGTAACT 59.218 38.462 0.00 0.00 35.25 2.24
1565 1725 6.590677 CAGAGCAGTGATGTCATAGGATATTG 59.409 42.308 0.00 0.00 0.00 1.90
1732 1892 8.658840 TTTTCCCCAACTTATTAGCTTAATGT 57.341 30.769 0.00 0.00 0.00 2.71
2008 2170 5.901884 GCATCGAGGATTATTTTGTTACACG 59.098 40.000 0.00 0.00 0.00 4.49
2356 2520 6.680874 AGTAGTCTTATGTACAGAGGTTCG 57.319 41.667 0.33 0.00 0.00 3.95
2481 2646 2.280628 GCGTAATGCTCAAAGCTACCT 58.719 47.619 0.11 0.00 42.97 3.08
2482 2647 2.678336 GCGTAATGCTCAAAGCTACCTT 59.322 45.455 0.11 0.00 42.97 3.50
2487 2652 6.312918 CGTAATGCTCAAAGCTACCTTTTCTA 59.687 38.462 0.11 0.00 42.97 2.10
2489 2654 7.709149 AATGCTCAAAGCTACCTTTTCTATT 57.291 32.000 0.11 0.00 42.97 1.73
2490 2655 6.500684 TGCTCAAAGCTACCTTTTCTATTG 57.499 37.500 0.11 0.00 42.97 1.90
2603 2768 9.450807 GGAATATTTCAATGGTTGATTACTTCG 57.549 33.333 0.00 0.00 39.84 3.79
2623 2788 5.229921 TCGCTGCTGGTAAATAATTGAAC 57.770 39.130 0.00 0.00 0.00 3.18
2801 2967 3.627123 TGGAACACAGCCATAATGAATCG 59.373 43.478 0.00 0.00 0.00 3.34
2831 2997 1.003580 CTTGCAGTCCCATAGTGGTGT 59.996 52.381 0.00 0.00 35.17 4.16
2879 3045 3.792124 GCAAGCAAAGCACGACTTAGTTT 60.792 43.478 0.00 0.00 37.75 2.66
2946 3112 3.926058 ACTGGTGTTACTTTGTGGAGT 57.074 42.857 0.00 0.00 0.00 3.85
2949 3115 3.804036 TGGTGTTACTTTGTGGAGTCAG 58.196 45.455 0.00 0.00 0.00 3.51
2963 3149 3.262660 TGGAGTCAGTCTCTTCATTGCAT 59.737 43.478 0.00 0.00 42.40 3.96
2978 3172 1.401761 TGCATTGGTGTGAGCAAACT 58.598 45.000 0.00 0.00 39.20 2.66
2988 3182 4.702131 GGTGTGAGCAAACTAGGAATTCAT 59.298 41.667 7.93 2.14 0.00 2.57
3003 3197 2.988010 TTCATCCCAGAAGTCCGATG 57.012 50.000 0.00 0.00 34.66 3.84
3020 3214 5.934625 GTCCGATGTATATGGCTGAAATCTT 59.065 40.000 0.00 0.00 0.00 2.40
3369 3563 1.474332 TTCGACCTGCCCCGTTAAGT 61.474 55.000 0.00 0.00 0.00 2.24
3408 3602 4.214545 CGCATATAAGTTTCGGGGCATTTA 59.785 41.667 0.00 0.00 0.00 1.40
3518 3713 6.545666 TGCATCTCAAAACTTAAAACTGAGGA 59.454 34.615 0.00 0.00 35.33 3.71
3572 3767 9.840427 AAGTTATACTTTGACAATACATTGTGC 57.160 29.630 12.15 5.28 42.34 4.57
3643 3841 9.888878 CTTGCAATGGTCATTATATCTTTACTG 57.111 33.333 0.00 0.00 0.00 2.74
3660 3858 9.939424 ATCTTTACTGTTATTACTACTCCCTCT 57.061 33.333 0.00 0.00 0.00 3.69
3661 3859 9.186837 TCTTTACTGTTATTACTACTCCCTCTG 57.813 37.037 0.00 0.00 0.00 3.35
3662 3860 8.890410 TTTACTGTTATTACTACTCCCTCTGT 57.110 34.615 0.00 0.00 0.00 3.41
3663 3861 8.517062 TTACTGTTATTACTACTCCCTCTGTC 57.483 38.462 0.00 0.00 0.00 3.51
3664 3862 5.892686 ACTGTTATTACTACTCCCTCTGTCC 59.107 44.000 0.00 0.00 0.00 4.02
3665 3863 5.206587 TGTTATTACTACTCCCTCTGTCCC 58.793 45.833 0.00 0.00 0.00 4.46
3666 3864 5.206587 GTTATTACTACTCCCTCTGTCCCA 58.793 45.833 0.00 0.00 0.00 4.37
3667 3865 4.561254 ATTACTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
3668 3866 5.681494 ATTACTACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
3669 3867 5.476950 TTACTACTCCCTCTGTCCCATAA 57.523 43.478 0.00 0.00 0.00 1.90
3670 3868 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
3671 3869 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
3672 3870 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
3673 3871 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
3674 3872 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
3675 3873 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
3676 3874 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
3677 3875 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
3678 3876 4.408921 CCCTCTGTCCCATAATGTAAGACA 59.591 45.833 0.00 0.00 36.16 3.41
3679 3877 5.072329 CCCTCTGTCCCATAATGTAAGACAT 59.928 44.000 0.00 0.00 41.31 3.06
3681 3879 7.056635 CCTCTGTCCCATAATGTAAGACATTT 58.943 38.462 9.92 0.00 45.80 2.32
3682 3880 7.557719 CCTCTGTCCCATAATGTAAGACATTTT 59.442 37.037 9.92 0.33 45.80 1.82
3683 3881 8.877864 TCTGTCCCATAATGTAAGACATTTTT 57.122 30.769 9.92 0.00 45.80 1.94
3725 3923 3.564053 AAAACGTCTTACCTTGTGGGA 57.436 42.857 0.00 0.00 38.76 4.37
3726 3924 2.538512 AACGTCTTACCTTGTGGGAC 57.461 50.000 0.00 0.00 38.76 4.46
3727 3925 3.117589 CGTCTTACCTTGTGGGACG 57.882 57.895 0.00 0.00 42.38 4.79
3728 3926 0.389426 CGTCTTACCTTGTGGGACGG 60.389 60.000 0.00 0.00 43.69 4.79
3729 3927 0.971386 GTCTTACCTTGTGGGACGGA 59.029 55.000 0.00 0.00 38.76 4.69
3730 3928 1.067071 GTCTTACCTTGTGGGACGGAG 60.067 57.143 0.00 0.00 38.76 4.63
3731 3929 0.249398 CTTACCTTGTGGGACGGAGG 59.751 60.000 0.00 0.00 38.76 4.30
3732 3930 1.196104 TTACCTTGTGGGACGGAGGG 61.196 60.000 0.00 0.00 38.76 4.30
3733 3931 2.096707 TACCTTGTGGGACGGAGGGA 62.097 60.000 0.00 0.00 38.76 4.20
3734 3932 2.660064 CCTTGTGGGACGGAGGGAG 61.660 68.421 0.00 0.00 37.23 4.30
3735 3933 1.913762 CTTGTGGGACGGAGGGAGT 60.914 63.158 0.00 0.00 0.00 3.85
3736 3934 0.613853 CTTGTGGGACGGAGGGAGTA 60.614 60.000 0.00 0.00 0.00 2.59
3737 3935 0.901580 TTGTGGGACGGAGGGAGTAC 60.902 60.000 0.00 0.00 0.00 2.73
3775 3981 0.533032 CCGTCTCTCAAGAACCCCTC 59.467 60.000 0.00 0.00 31.93 4.30
3779 3985 4.462133 CGTCTCTCAAGAACCCCTCTATA 58.538 47.826 0.00 0.00 32.46 1.31
3783 3989 7.235804 GTCTCTCAAGAACCCCTCTATATAGT 58.764 42.308 9.58 0.00 32.46 2.12
3796 4002 8.114102 CCCCTCTATATAGTCACCAGTGTAATA 58.886 40.741 9.58 0.00 0.00 0.98
3807 4013 8.540388 AGTCACCAGTGTAATAATGTCAATACT 58.460 33.333 0.00 0.00 0.00 2.12
3808 4014 8.604035 GTCACCAGTGTAATAATGTCAATACTG 58.396 37.037 0.00 0.00 35.34 2.74
3828 4034 9.787435 AATACTGTACTTCTTTTTATGTCACCA 57.213 29.630 0.00 0.00 0.00 4.17
3829 4035 7.730364 ACTGTACTTCTTTTTATGTCACCAG 57.270 36.000 0.00 0.00 0.00 4.00
3830 4036 7.280356 ACTGTACTTCTTTTTATGTCACCAGT 58.720 34.615 0.00 0.00 0.00 4.00
3831 4037 7.226720 ACTGTACTTCTTTTTATGTCACCAGTG 59.773 37.037 0.00 0.00 0.00 3.66
3832 4038 7.051623 TGTACTTCTTTTTATGTCACCAGTGT 58.948 34.615 0.00 0.00 0.00 3.55
3833 4039 8.205512 TGTACTTCTTTTTATGTCACCAGTGTA 58.794 33.333 0.00 0.00 0.00 2.90
3834 4040 9.048446 GTACTTCTTTTTATGTCACCAGTGTAA 57.952 33.333 0.00 0.00 0.00 2.41
3835 4041 8.691661 ACTTCTTTTTATGTCACCAGTGTAAT 57.308 30.769 0.00 0.00 0.00 1.89
3836 4042 9.787435 ACTTCTTTTTATGTCACCAGTGTAATA 57.213 29.630 0.00 0.00 0.00 0.98
3842 4048 9.508642 TTTTATGTCACCAGTGTAATAATGTCA 57.491 29.630 0.00 0.00 0.00 3.58
3843 4049 9.508642 TTTATGTCACCAGTGTAATAATGTCAA 57.491 29.630 0.00 0.00 0.00 3.18
3844 4050 9.679661 TTATGTCACCAGTGTAATAATGTCAAT 57.320 29.630 0.00 0.00 0.00 2.57
3846 4052 8.487313 TGTCACCAGTGTAATAATGTCAATAC 57.513 34.615 0.00 0.00 0.00 1.89
3847 4053 8.318412 TGTCACCAGTGTAATAATGTCAATACT 58.682 33.333 0.00 0.00 0.00 2.12
3848 4054 8.604035 GTCACCAGTGTAATAATGTCAATACTG 58.396 37.037 0.00 0.00 35.34 2.74
3849 4055 8.318412 TCACCAGTGTAATAATGTCAATACTGT 58.682 33.333 0.00 0.00 34.13 3.55
3850 4056 9.594478 CACCAGTGTAATAATGTCAATACTGTA 57.406 33.333 0.00 0.00 34.13 2.74
3851 4057 9.595823 ACCAGTGTAATAATGTCAATACTGTAC 57.404 33.333 0.00 0.00 34.13 2.90
3852 4058 9.817809 CCAGTGTAATAATGTCAATACTGTACT 57.182 33.333 0.00 0.00 34.13 2.73
3892 4098 6.313164 GGATTCGGATCGATTATAAAGGTTCC 59.687 42.308 0.00 0.00 35.23 3.62
3907 4113 6.884280 AAAGGTTCCATCAGAAGTACAAAG 57.116 37.500 0.00 0.00 34.29 2.77
3910 4116 4.083271 GGTTCCATCAGAAGTACAAAGCAC 60.083 45.833 0.00 0.00 34.29 4.40
3911 4117 4.623932 TCCATCAGAAGTACAAAGCACT 57.376 40.909 0.00 0.00 0.00 4.40
3917 4123 5.077564 TCAGAAGTACAAAGCACTCCTAGA 58.922 41.667 0.00 0.00 0.00 2.43
3920 4126 3.507411 AGTACAAAGCACTCCTAGACCA 58.493 45.455 0.00 0.00 0.00 4.02
3932 4138 1.067776 CCTAGACCAGTGAACGACCAC 60.068 57.143 0.00 0.00 37.32 4.16
3939 4145 0.674534 AGTGAACGACCACTGTCTCC 59.325 55.000 12.22 0.00 44.93 3.71
3943 4149 4.778415 CGACCACTGTCTCCGCCG 62.778 72.222 0.00 0.00 39.47 6.46
3970 4176 1.597742 CCGCTAACGCTAGGGTACTA 58.402 55.000 13.46 2.11 36.57 1.82
3980 4186 6.324561 ACGCTAGGGTACTATTTAGTTAGC 57.675 41.667 11.28 8.26 36.38 3.09
3984 4190 7.381678 CGCTAGGGTACTATTTAGTTAGCTTTG 59.618 40.741 13.33 1.04 37.04 2.77
3985 4191 8.202811 GCTAGGGTACTATTTAGTTAGCTTTGT 58.797 37.037 0.00 0.00 36.61 2.83
3988 4194 9.264653 AGGGTACTATTTAGTTAGCTTTGTACT 57.735 33.333 0.00 0.00 37.73 2.73
3989 4195 9.526713 GGGTACTATTTAGTTAGCTTTGTACTC 57.473 37.037 0.00 0.00 37.73 2.59
3990 4196 9.526713 GGTACTATTTAGTTAGCTTTGTACTCC 57.473 37.037 0.00 0.00 37.73 3.85
3991 4197 9.526713 GTACTATTTAGTTAGCTTTGTACTCCC 57.473 37.037 0.00 0.00 37.73 4.30
3992 4198 8.376803 ACTATTTAGTTAGCTTTGTACTCCCT 57.623 34.615 0.00 0.00 31.13 4.20
3993 4199 8.476447 ACTATTTAGTTAGCTTTGTACTCCCTC 58.524 37.037 0.00 0.00 31.13 4.30
3994 4200 3.870633 AGTTAGCTTTGTACTCCCTCG 57.129 47.619 0.00 0.00 0.00 4.63
3995 4201 2.496470 AGTTAGCTTTGTACTCCCTCGG 59.504 50.000 0.00 0.00 0.00 4.63
3996 4202 0.822164 TAGCTTTGTACTCCCTCGGC 59.178 55.000 0.00 0.00 0.00 5.54
3997 4203 0.905337 AGCTTTGTACTCCCTCGGCT 60.905 55.000 0.00 0.00 0.00 5.52
3998 4204 0.460459 GCTTTGTACTCCCTCGGCTC 60.460 60.000 0.00 0.00 0.00 4.70
3999 4205 0.175989 CTTTGTACTCCCTCGGCTCC 59.824 60.000 0.00 0.00 0.00 4.70
4000 4206 0.543410 TTTGTACTCCCTCGGCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
4001 4207 0.543410 TTGTACTCCCTCGGCTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
4002 4208 0.543410 TGTACTCCCTCGGCTCCAAA 60.543 55.000 0.00 0.00 0.00 3.28
4003 4209 0.611714 GTACTCCCTCGGCTCCAAAA 59.388 55.000 0.00 0.00 0.00 2.44
4004 4210 1.209747 GTACTCCCTCGGCTCCAAAAT 59.790 52.381 0.00 0.00 0.00 1.82
4005 4211 1.580059 ACTCCCTCGGCTCCAAAATA 58.420 50.000 0.00 0.00 0.00 1.40
4006 4212 2.127708 ACTCCCTCGGCTCCAAAATAT 58.872 47.619 0.00 0.00 0.00 1.28
4007 4213 3.314693 ACTCCCTCGGCTCCAAAATATA 58.685 45.455 0.00 0.00 0.00 0.86
4008 4214 3.325135 ACTCCCTCGGCTCCAAAATATAG 59.675 47.826 0.00 0.00 0.00 1.31
4009 4215 3.314693 TCCCTCGGCTCCAAAATATAGT 58.685 45.455 0.00 0.00 0.00 2.12
4010 4216 3.071023 TCCCTCGGCTCCAAAATATAGTG 59.929 47.826 0.00 0.00 0.00 2.74
4011 4217 2.808543 CCTCGGCTCCAAAATATAGTGC 59.191 50.000 0.00 0.00 0.00 4.40
4012 4218 3.495100 CCTCGGCTCCAAAATATAGTGCT 60.495 47.826 0.00 0.00 0.00 4.40
4013 4219 4.262463 CCTCGGCTCCAAAATATAGTGCTA 60.262 45.833 0.00 0.00 0.00 3.49
4014 4220 5.482908 CTCGGCTCCAAAATATAGTGCTAT 58.517 41.667 0.00 0.00 0.00 2.97
4015 4221 5.865085 TCGGCTCCAAAATATAGTGCTATT 58.135 37.500 0.00 0.00 0.00 1.73
4016 4222 5.932303 TCGGCTCCAAAATATAGTGCTATTC 59.068 40.000 0.00 0.00 0.00 1.75
4017 4223 5.934625 CGGCTCCAAAATATAGTGCTATTCT 59.065 40.000 0.00 0.00 0.00 2.40
4018 4224 6.091441 CGGCTCCAAAATATAGTGCTATTCTC 59.909 42.308 0.00 0.00 0.00 2.87
4019 4225 6.091441 GGCTCCAAAATATAGTGCTATTCTCG 59.909 42.308 0.00 0.00 0.00 4.04
4020 4226 6.647067 GCTCCAAAATATAGTGCTATTCTCGT 59.353 38.462 0.00 0.00 0.00 4.18
4021 4227 7.359598 GCTCCAAAATATAGTGCTATTCTCGTG 60.360 40.741 0.00 0.00 0.00 4.35
4022 4228 6.423905 TCCAAAATATAGTGCTATTCTCGTGC 59.576 38.462 0.00 0.00 0.00 5.34
4023 4229 6.425114 CCAAAATATAGTGCTATTCTCGTGCT 59.575 38.462 0.00 0.00 0.00 4.40
4024 4230 7.041780 CCAAAATATAGTGCTATTCTCGTGCTT 60.042 37.037 0.00 0.00 0.00 3.91
4025 4231 7.644986 AAATATAGTGCTATTCTCGTGCTTC 57.355 36.000 0.00 0.00 0.00 3.86
4026 4232 4.655762 ATAGTGCTATTCTCGTGCTTCA 57.344 40.909 0.00 0.00 0.00 3.02
4027 4233 3.319137 AGTGCTATTCTCGTGCTTCAA 57.681 42.857 0.00 0.00 0.00 2.69
4028 4234 2.996621 AGTGCTATTCTCGTGCTTCAAC 59.003 45.455 0.00 0.00 0.00 3.18
4029 4235 2.996621 GTGCTATTCTCGTGCTTCAACT 59.003 45.455 0.00 0.00 0.00 3.16
4030 4236 3.433615 GTGCTATTCTCGTGCTTCAACTT 59.566 43.478 0.00 0.00 0.00 2.66
4031 4237 4.065088 TGCTATTCTCGTGCTTCAACTTT 58.935 39.130 0.00 0.00 0.00 2.66
4032 4238 4.083855 TGCTATTCTCGTGCTTCAACTTTG 60.084 41.667 0.00 0.00 0.00 2.77
4033 4239 4.152402 GCTATTCTCGTGCTTCAACTTTGA 59.848 41.667 0.00 0.00 34.92 2.69
4034 4240 3.944422 TTCTCGTGCTTCAACTTTGAC 57.056 42.857 0.00 0.00 36.83 3.18
4035 4241 2.210116 TCTCGTGCTTCAACTTTGACC 58.790 47.619 0.00 0.00 36.83 4.02
4036 4242 1.939934 CTCGTGCTTCAACTTTGACCA 59.060 47.619 0.00 0.00 36.83 4.02
4037 4243 2.549754 CTCGTGCTTCAACTTTGACCAT 59.450 45.455 0.00 0.00 36.83 3.55
4038 4244 3.734463 TCGTGCTTCAACTTTGACCATA 58.266 40.909 0.00 0.00 36.83 2.74
4039 4245 4.130857 TCGTGCTTCAACTTTGACCATAA 58.869 39.130 0.00 0.00 36.83 1.90
4040 4246 4.576873 TCGTGCTTCAACTTTGACCATAAA 59.423 37.500 0.00 0.00 36.83 1.40
4041 4247 5.240623 TCGTGCTTCAACTTTGACCATAAAT 59.759 36.000 0.00 0.00 36.83 1.40
4042 4248 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
4043 4249 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
4044 4250 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
4045 4251 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
4046 4252 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
4047 4253 9.476202 GCTTCAACTTTGACCATAAATTTAACT 57.524 29.630 1.21 0.00 36.83 2.24
4051 4257 9.061610 CAACTTTGACCATAAATTTAACTAGCG 57.938 33.333 1.21 0.00 0.00 4.26
4052 4258 8.556213 ACTTTGACCATAAATTTAACTAGCGA 57.444 30.769 1.21 0.00 0.00 4.93
4053 4259 8.665685 ACTTTGACCATAAATTTAACTAGCGAG 58.334 33.333 1.21 0.00 0.00 5.03
4054 4260 8.780846 TTTGACCATAAATTTAACTAGCGAGA 57.219 30.769 0.00 0.00 0.00 4.04
4055 4261 7.766219 TGACCATAAATTTAACTAGCGAGAC 57.234 36.000 0.00 0.00 0.00 3.36
4056 4262 6.759827 TGACCATAAATTTAACTAGCGAGACC 59.240 38.462 0.00 0.00 0.00 3.85
4057 4263 5.751990 ACCATAAATTTAACTAGCGAGACCG 59.248 40.000 0.00 0.00 39.16 4.79
4058 4264 5.981315 CCATAAATTTAACTAGCGAGACCGA 59.019 40.000 0.00 0.00 38.22 4.69
4059 4265 6.074463 CCATAAATTTAACTAGCGAGACCGAC 60.074 42.308 0.00 0.00 38.22 4.79
4060 4266 4.445452 AATTTAACTAGCGAGACCGACA 57.555 40.909 0.00 0.00 38.22 4.35
4061 4267 3.921119 TTTAACTAGCGAGACCGACAA 57.079 42.857 0.00 0.00 38.22 3.18
4062 4268 2.907910 TAACTAGCGAGACCGACAAC 57.092 50.000 0.00 0.00 38.22 3.32
4063 4269 0.109873 AACTAGCGAGACCGACAACG 60.110 55.000 0.00 0.00 38.22 4.10
4086 4292 3.606687 CGGGAGCAAAAGTTATACCAGT 58.393 45.455 0.00 0.00 0.00 4.00
4087 4293 3.374058 CGGGAGCAAAAGTTATACCAGTG 59.626 47.826 0.00 0.00 0.00 3.66
4088 4294 4.585879 GGGAGCAAAAGTTATACCAGTGA 58.414 43.478 0.00 0.00 0.00 3.41
4089 4295 5.007682 GGGAGCAAAAGTTATACCAGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
4090 4296 5.652452 GGGAGCAAAAGTTATACCAGTGAAT 59.348 40.000 0.00 0.00 0.00 2.57
4091 4297 6.152831 GGGAGCAAAAGTTATACCAGTGAATT 59.847 38.462 0.00 0.00 0.00 2.17
4092 4298 7.251281 GGAGCAAAAGTTATACCAGTGAATTC 58.749 38.462 0.00 0.00 0.00 2.17
4093 4299 6.842163 AGCAAAAGTTATACCAGTGAATTCG 58.158 36.000 0.04 0.00 0.00 3.34
4094 4300 6.430000 AGCAAAAGTTATACCAGTGAATTCGT 59.570 34.615 0.04 0.00 0.00 3.85
4095 4301 7.604927 AGCAAAAGTTATACCAGTGAATTCGTA 59.395 33.333 0.04 0.00 0.00 3.43
4096 4302 8.395633 GCAAAAGTTATACCAGTGAATTCGTAT 58.604 33.333 0.04 5.16 0.00 3.06
4141 4347 1.652012 TTTTTCTGCGCAACGGAGG 59.348 52.632 13.05 0.00 45.01 4.30
4142 4348 1.791103 TTTTTCTGCGCAACGGAGGG 61.791 55.000 13.05 0.00 45.01 4.30
4143 4349 2.668185 TTTTCTGCGCAACGGAGGGA 62.668 55.000 13.05 0.00 45.01 4.20
4159 4365 4.589374 CGGAGGGAGTACTAAAATCCATCT 59.411 45.833 11.20 0.00 42.22 2.90
4161 4367 6.294620 CGGAGGGAGTACTAAAATCCATCTAC 60.295 46.154 11.20 0.00 42.22 2.59
4177 4383 6.688578 TCCATCTACGATCACTAAATTAGGC 58.311 40.000 4.92 0.00 0.00 3.93
4187 4393 5.118990 TCACTAAATTAGGCTCATGCAGTC 58.881 41.667 4.92 0.00 41.91 3.51
4210 4416 7.389053 AGTCACTTTGATCACTGGATTTTAGAC 59.611 37.037 0.00 0.00 32.67 2.59
4237 4443 7.936847 TGTCTGATTTACAATCAGTAAGGTTGT 59.063 33.333 20.71 0.00 43.20 3.32
4249 4456 1.675552 AAGGTTGTTTACGTGCAGCT 58.324 45.000 0.00 0.00 0.00 4.24
4275 4482 1.002544 GGCATGATCACTAGGGTAGGC 59.997 57.143 0.00 0.00 0.00 3.93
4279 4486 1.343069 GATCACTAGGGTAGGCAGGG 58.657 60.000 0.00 0.00 0.00 4.45
4297 4504 0.451783 GGTTGGCTACTGGATTTGCG 59.548 55.000 0.00 0.00 0.00 4.85
4302 4509 1.326548 GGCTACTGGATTTGCGTAACG 59.673 52.381 0.00 0.00 0.00 3.18
4303 4510 1.997606 GCTACTGGATTTGCGTAACGT 59.002 47.619 0.00 0.00 0.00 3.99
4305 4512 3.613737 GCTACTGGATTTGCGTAACGTAA 59.386 43.478 0.00 0.00 0.00 3.18
4310 4517 5.062558 ACTGGATTTGCGTAACGTAACATAC 59.937 40.000 0.00 0.00 30.44 2.39
4314 4521 5.499268 TTTGCGTAACGTAACATACAGTC 57.501 39.130 0.00 0.00 30.44 3.51
4364 4571 1.457346 CCTTTGTTAGAGCCCAGCAG 58.543 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.976701 AAGCAATCGACCCGGGCAG 62.977 63.158 24.08 15.75 0.00 4.85
14 15 2.513897 GGAAGCAATCGACCCGGG 60.514 66.667 22.25 22.25 0.00 5.73
17 18 1.452108 CCAGGGAAGCAATCGACCC 60.452 63.158 0.00 0.00 42.36 4.46
19 20 0.322546 AACCCAGGGAAGCAATCGAC 60.323 55.000 14.54 0.00 0.00 4.20
21 22 1.937546 GCAACCCAGGGAAGCAATCG 61.938 60.000 14.54 0.00 0.00 3.34
22 23 1.893062 GCAACCCAGGGAAGCAATC 59.107 57.895 14.54 0.00 0.00 2.67
23 24 1.978617 CGCAACCCAGGGAAGCAAT 60.979 57.895 14.54 0.00 0.00 3.56
24 25 2.424842 ATCGCAACCCAGGGAAGCAA 62.425 55.000 14.54 0.36 33.97 3.91
26 27 1.250840 AAATCGCAACCCAGGGAAGC 61.251 55.000 14.54 14.65 33.97 3.86
27 28 0.527565 CAAATCGCAACCCAGGGAAG 59.472 55.000 14.54 4.87 33.97 3.46
40 43 3.060895 GCTCAGTCTACGAAACCAAATCG 59.939 47.826 0.00 0.00 45.47 3.34
76 79 0.179045 AATCCCGCCCAAGATTCTCG 60.179 55.000 0.00 0.00 0.00 4.04
88 91 4.810191 ATAAGATCCTACTGAATCCCGC 57.190 45.455 0.00 0.00 0.00 6.13
91 94 9.890915 ATCCCTATATAAGATCCTACTGAATCC 57.109 37.037 0.00 0.00 0.00 3.01
108 111 7.883311 CGTTCCAATAAGGTTTGATCCCTATAT 59.117 37.037 0.00 0.00 39.02 0.86
109 112 7.071447 TCGTTCCAATAAGGTTTGATCCCTATA 59.929 37.037 0.00 0.00 39.02 1.31
119 122 4.506654 CGATCGATCGTTCCAATAAGGTTT 59.493 41.667 33.95 0.00 44.74 3.27
136 139 2.029623 CTAAGAAAGGGGGACGATCGA 58.970 52.381 24.34 0.00 0.00 3.59
137 140 1.538419 GCTAAGAAAGGGGGACGATCG 60.538 57.143 14.88 14.88 0.00 3.69
143 146 1.372501 AAGCAGCTAAGAAAGGGGGA 58.627 50.000 0.00 0.00 0.00 4.81
167 170 3.938334 GGACATTGCGCCCAAAAATAAAT 59.062 39.130 4.18 0.00 34.05 1.40
171 174 0.036483 GGGACATTGCGCCCAAAAAT 60.036 50.000 4.18 0.00 44.07 1.82
178 181 2.322999 GACAATCGGGACATTGCGCC 62.323 60.000 4.18 0.00 37.28 6.53
180 183 0.801872 TTGACAATCGGGACATTGCG 59.198 50.000 0.00 0.00 37.28 4.85
181 184 1.812571 ACTTGACAATCGGGACATTGC 59.187 47.619 0.00 0.00 37.28 3.56
182 185 3.366273 CCAACTTGACAATCGGGACATTG 60.366 47.826 0.00 0.00 39.35 2.82
183 186 2.819608 CCAACTTGACAATCGGGACATT 59.180 45.455 0.00 0.00 0.00 2.71
184 187 2.039746 TCCAACTTGACAATCGGGACAT 59.960 45.455 0.00 0.00 0.00 3.06
186 189 2.178912 TCCAACTTGACAATCGGGAC 57.821 50.000 0.00 0.00 0.00 4.46
189 192 3.367292 CCCAAATCCAACTTGACAATCGG 60.367 47.826 0.00 0.00 0.00 4.18
190 193 3.255642 ACCCAAATCCAACTTGACAATCG 59.744 43.478 0.00 0.00 0.00 3.34
191 194 4.871933 ACCCAAATCCAACTTGACAATC 57.128 40.909 0.00 0.00 0.00 2.67
197 200 3.328505 GCATCAACCCAAATCCAACTTG 58.671 45.455 0.00 0.00 0.00 3.16
226 229 4.760204 ACATTAGCTAATTACCGAATGGGC 59.240 41.667 16.46 1.20 40.62 5.36
240 243 8.394877 CGAAATATCCACAAAACACATTAGCTA 58.605 33.333 0.00 0.00 0.00 3.32
241 244 7.250569 CGAAATATCCACAAAACACATTAGCT 58.749 34.615 0.00 0.00 0.00 3.32
255 258 4.558538 AATTCTGCTGCGAAATATCCAC 57.441 40.909 10.06 0.00 0.00 4.02
288 291 3.559238 GTGGACATCATTTCACCACAC 57.441 47.619 0.00 0.00 46.75 3.82
390 393 1.067295 TTCTGGAGTGATGTGCCCTT 58.933 50.000 0.00 0.00 0.00 3.95
455 458 3.426787 AATCCCATGTCGTTGTGGTTA 57.573 42.857 0.00 0.00 33.55 2.85
555 710 2.621055 TCACCTTTTGTTCATCCAACGG 59.379 45.455 0.00 0.00 37.90 4.44
556 711 3.980646 TCACCTTTTGTTCATCCAACG 57.019 42.857 0.00 0.00 37.90 4.10
635 792 4.594123 TTCAGTGTGTCCTCGTGAATTA 57.406 40.909 0.00 0.00 0.00 1.40
703 860 7.869937 GTGTATGCACAGTCAGACAGATATAAT 59.130 37.037 9.26 0.00 44.64 1.28
712 869 2.065993 ACGTGTATGCACAGTCAGAC 57.934 50.000 14.55 0.00 45.50 3.51
741 898 6.388689 AGGTGATCCTAATTACACAATACCCA 59.611 38.462 0.00 0.00 43.12 4.51
856 1014 6.237279 GCATAAATTACACTGCATGTTGAACG 60.237 38.462 7.02 0.00 43.19 3.95
885 1043 3.980775 CGAGCAAAACCAACATAACAAGG 59.019 43.478 0.00 0.00 0.00 3.61
932 1090 6.779860 ACAACATACAGGATTACTTGGAACT 58.220 36.000 0.00 0.00 0.00 3.01
939 1097 5.183140 GCACCAAACAACATACAGGATTACT 59.817 40.000 0.00 0.00 0.00 2.24
958 1116 5.323382 ACTGGATTAATGATATGGCACCA 57.677 39.130 0.00 0.00 0.00 4.17
984 1142 2.042162 AGCCATCTGGACCAAAGATTGT 59.958 45.455 0.00 0.00 37.39 2.71
1101 1261 2.906389 TCTAGACCTTGGAGCATTGTGT 59.094 45.455 0.00 0.00 0.00 3.72
1302 1462 1.226746 GGCGGAATAATGGAAGACGG 58.773 55.000 0.00 0.00 0.00 4.79
1328 1488 8.566260 AGATAACAGATAACCGTATCACACTAC 58.434 37.037 0.00 0.00 38.95 2.73
1384 1544 5.794687 CAACTTGCATTGCATGATCATTT 57.205 34.783 25.94 10.42 38.76 2.32
1464 1624 4.916983 AAAGACAACATAAGCAACAGCA 57.083 36.364 0.00 0.00 0.00 4.41
1529 1689 6.163476 ACATCACTGCTCTGTTCGTTTTATA 58.837 36.000 0.00 0.00 0.00 0.98
1565 1725 8.964420 TTATATTTGTCACTAAAAGCAACAGC 57.036 30.769 0.00 0.00 0.00 4.40
1602 1762 5.508825 CCACCAGTATCTGATAACTGAGAGC 60.509 48.000 19.69 1.13 44.79 4.09
1711 1871 7.012421 GTCTGACATTAAGCTAATAAGTTGGGG 59.988 40.741 2.24 0.00 0.00 4.96
1712 1872 7.770897 AGTCTGACATTAAGCTAATAAGTTGGG 59.229 37.037 10.88 0.00 0.00 4.12
2028 2190 4.861883 TCTTTCGCGACGGAAGAG 57.138 55.556 15.80 5.34 45.10 2.85
2030 2192 1.136611 CAAAGTCTTTCGCGACGGAAG 60.137 52.381 9.15 10.87 43.13 3.46
2061 2223 5.060506 CGGGTCAATATGCAACCTAATGTA 58.939 41.667 4.57 0.00 33.42 2.29
2356 2520 9.521503 GCTAAAAGATCCCAACATTAAAATCTC 57.478 33.333 0.00 0.00 0.00 2.75
2421 2586 6.069088 TGGAACATAACCAATGGAATCCTACT 60.069 38.462 6.16 0.00 40.16 2.57
2422 2587 6.126409 TGGAACATAACCAATGGAATCCTAC 58.874 40.000 6.16 0.00 40.16 3.18
2489 2654 4.935205 CGAGATCCTGTTAATTGTTCCACA 59.065 41.667 0.00 0.00 0.00 4.17
2490 2655 5.175859 TCGAGATCCTGTTAATTGTTCCAC 58.824 41.667 0.00 0.00 0.00 4.02
2507 2672 4.762289 AACCTCCATAAAAGCTCGAGAT 57.238 40.909 18.75 7.13 0.00 2.75
2556 2721 3.370978 CCAATAACCACTAGAAGTGCACG 59.629 47.826 12.01 0.00 44.63 5.34
2603 2768 6.620678 TCAAGTTCAATTATTTACCAGCAGC 58.379 36.000 0.00 0.00 0.00 5.25
2831 2997 6.375174 TGCTCTATTTATCTGCAGCAAAGAAA 59.625 34.615 9.47 2.26 34.01 2.52
2879 3045 6.925718 CGATCTGCCTAGTTTCAATATCTTGA 59.074 38.462 0.00 0.00 39.62 3.02
2927 3093 3.804036 TGACTCCACAAAGTAACACCAG 58.196 45.455 0.00 0.00 0.00 4.00
2946 3112 3.754850 CACCAATGCAATGAAGAGACTGA 59.245 43.478 2.50 0.00 0.00 3.41
2949 3115 3.503363 TCACACCAATGCAATGAAGAGAC 59.497 43.478 2.50 0.00 0.00 3.36
2963 3149 3.569194 TTCCTAGTTTGCTCACACCAA 57.431 42.857 0.00 0.00 0.00 3.67
2978 3172 3.388024 CGGACTTCTGGGATGAATTCCTA 59.612 47.826 2.27 0.00 44.75 2.94
2988 3182 3.832490 CCATATACATCGGACTTCTGGGA 59.168 47.826 0.00 0.00 0.00 4.37
2999 3193 6.791887 ACAAGATTTCAGCCATATACATCG 57.208 37.500 0.00 0.00 0.00 3.84
3003 3197 6.912591 CGGAAAACAAGATTTCAGCCATATAC 59.087 38.462 5.39 0.00 40.34 1.47
3020 3214 0.179032 TTGAGAGCCTGCGGAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
3211 3405 2.594303 TCGGTTGCTGGCTTGTGG 60.594 61.111 0.00 0.00 0.00 4.17
3385 3579 1.588674 TGCCCCGAAACTTATATGCG 58.411 50.000 0.00 0.00 0.00 4.73
3408 3602 0.035152 TTGCGAGCTCCCACATGAAT 60.035 50.000 8.47 0.00 0.00 2.57
3518 3713 9.347240 GATATATAACAAGCATAAGCATCCCAT 57.653 33.333 0.00 0.00 45.49 4.00
3564 3759 5.950758 TTTTATACAGGAACGCACAATGT 57.049 34.783 0.00 0.00 0.00 2.71
3592 3787 6.088824 GTCGCTTGTTCATCTCAATTCATTT 58.911 36.000 0.00 0.00 0.00 2.32
3643 3841 5.206587 TGGGACAGAGGGAGTAGTAATAAC 58.793 45.833 0.00 0.00 0.00 1.89
3654 3852 7.099427 ATGTCTTACATTATGGGACAGAGGGA 61.099 42.308 17.20 1.33 37.35 4.20
3655 3853 5.072329 ATGTCTTACATTATGGGACAGAGGG 59.928 44.000 17.20 0.00 37.35 4.30
3656 3854 6.179906 ATGTCTTACATTATGGGACAGAGG 57.820 41.667 17.20 0.00 37.35 3.69
3704 3902 3.628942 GTCCCACAAGGTAAGACGTTTTT 59.371 43.478 0.00 0.00 36.75 1.94
3705 3903 3.208594 GTCCCACAAGGTAAGACGTTTT 58.791 45.455 0.00 0.00 36.75 2.43
3706 3904 2.804212 CGTCCCACAAGGTAAGACGTTT 60.804 50.000 10.44 0.00 40.20 3.60
3707 3905 1.269936 CGTCCCACAAGGTAAGACGTT 60.270 52.381 10.44 0.00 40.20 3.99
3708 3906 0.316204 CGTCCCACAAGGTAAGACGT 59.684 55.000 10.44 0.00 40.20 4.34
3709 3907 0.389426 CCGTCCCACAAGGTAAGACG 60.389 60.000 11.26 11.26 42.83 4.18
3710 3908 0.971386 TCCGTCCCACAAGGTAAGAC 59.029 55.000 0.00 0.00 36.75 3.01
3711 3909 1.263356 CTCCGTCCCACAAGGTAAGA 58.737 55.000 0.00 0.00 36.75 2.10
3712 3910 0.249398 CCTCCGTCCCACAAGGTAAG 59.751 60.000 0.00 0.00 36.75 2.34
3713 3911 1.196104 CCCTCCGTCCCACAAGGTAA 61.196 60.000 0.00 0.00 36.75 2.85
3714 3912 1.611261 CCCTCCGTCCCACAAGGTA 60.611 63.158 0.00 0.00 36.75 3.08
3715 3913 2.928396 CCCTCCGTCCCACAAGGT 60.928 66.667 0.00 0.00 36.75 3.50
3716 3914 2.606519 TCCCTCCGTCCCACAAGG 60.607 66.667 0.00 0.00 0.00 3.61
3717 3915 0.613853 TACTCCCTCCGTCCCACAAG 60.614 60.000 0.00 0.00 0.00 3.16
3718 3916 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
3719 3917 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
3720 3918 0.686769 ATGTACTCCCTCCGTCCCAC 60.687 60.000 0.00 0.00 0.00 4.61
3721 3919 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3722 3920 1.400530 CCATGTACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
3723 3921 2.029307 GCCATGTACTCCCTCCGTCC 62.029 65.000 0.00 0.00 0.00 4.79
3724 3922 1.327690 TGCCATGTACTCCCTCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
3725 3923 0.907704 TTGCCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
3726 3924 0.469917 ATTGCCATGTACTCCCTCCG 59.530 55.000 0.00 0.00 0.00 4.63
3727 3925 2.689983 CAAATTGCCATGTACTCCCTCC 59.310 50.000 0.00 0.00 0.00 4.30
3728 3926 3.129287 CACAAATTGCCATGTACTCCCTC 59.871 47.826 0.00 0.00 0.00 4.30
3729 3927 3.091545 CACAAATTGCCATGTACTCCCT 58.908 45.455 0.00 0.00 0.00 4.20
3730 3928 3.088532 TCACAAATTGCCATGTACTCCC 58.911 45.455 0.00 0.00 0.00 4.30
3731 3929 3.129287 CCTCACAAATTGCCATGTACTCC 59.871 47.826 0.00 0.00 0.00 3.85
3732 3930 3.758554 ACCTCACAAATTGCCATGTACTC 59.241 43.478 0.00 0.00 0.00 2.59
3733 3931 3.766545 ACCTCACAAATTGCCATGTACT 58.233 40.909 0.00 0.00 0.00 2.73
3734 3932 4.142469 GGTACCTCACAAATTGCCATGTAC 60.142 45.833 4.06 0.96 0.00 2.90
3735 3933 4.013728 GGTACCTCACAAATTGCCATGTA 58.986 43.478 4.06 0.00 0.00 2.29
3736 3934 2.825532 GGTACCTCACAAATTGCCATGT 59.174 45.455 4.06 0.00 0.00 3.21
3737 3935 2.159393 CGGTACCTCACAAATTGCCATG 60.159 50.000 10.90 0.00 0.00 3.66
3783 3989 8.318412 ACAGTATTGACATTATTACACTGGTGA 58.682 33.333 7.78 0.00 37.15 4.02
3807 4013 7.051623 ACACTGGTGACATAAAAAGAAGTACA 58.948 34.615 7.78 0.00 41.51 2.90
3808 4014 7.492352 ACACTGGTGACATAAAAAGAAGTAC 57.508 36.000 7.78 0.00 41.51 2.73
3816 4022 9.508642 TGACATTATTACACTGGTGACATAAAA 57.491 29.630 7.78 0.00 41.51 1.52
3817 4023 9.508642 TTGACATTATTACACTGGTGACATAAA 57.491 29.630 7.78 0.00 41.51 1.40
3818 4024 9.679661 ATTGACATTATTACACTGGTGACATAA 57.320 29.630 7.78 9.04 41.51 1.90
3820 4026 9.109393 GTATTGACATTATTACACTGGTGACAT 57.891 33.333 7.78 1.96 41.51 3.06
3821 4027 8.318412 AGTATTGACATTATTACACTGGTGACA 58.682 33.333 7.78 0.00 39.59 3.58
3822 4028 8.604035 CAGTATTGACATTATTACACTGGTGAC 58.396 37.037 7.78 0.00 0.00 3.67
3823 4029 8.318412 ACAGTATTGACATTATTACACTGGTGA 58.682 33.333 7.78 0.00 37.15 4.02
3824 4030 8.492673 ACAGTATTGACATTATTACACTGGTG 57.507 34.615 0.00 0.00 37.15 4.17
3825 4031 9.595823 GTACAGTATTGACATTATTACACTGGT 57.404 33.333 0.00 0.00 37.15 4.00
3826 4032 9.817809 AGTACAGTATTGACATTATTACACTGG 57.182 33.333 0.00 0.00 37.15 4.00
3847 4053 9.151471 CGAATCCTTCTCATAAAAAGAAGTACA 57.849 33.333 10.90 0.00 45.41 2.90
3848 4054 8.604890 CCGAATCCTTCTCATAAAAAGAAGTAC 58.395 37.037 10.90 0.00 45.41 2.73
3849 4055 8.537016 TCCGAATCCTTCTCATAAAAAGAAGTA 58.463 33.333 10.90 0.00 45.41 2.24
3850 4056 7.394816 TCCGAATCCTTCTCATAAAAAGAAGT 58.605 34.615 10.90 0.00 45.41 3.01
3851 4057 7.849804 TCCGAATCCTTCTCATAAAAAGAAG 57.150 36.000 6.01 6.01 46.09 2.85
3852 4058 7.224753 CGATCCGAATCCTTCTCATAAAAAGAA 59.775 37.037 0.00 0.00 0.00 2.52
3853 4059 6.701841 CGATCCGAATCCTTCTCATAAAAAGA 59.298 38.462 0.00 0.00 0.00 2.52
3854 4060 6.701841 TCGATCCGAATCCTTCTCATAAAAAG 59.298 38.462 0.00 0.00 31.06 2.27
3855 4061 6.578944 TCGATCCGAATCCTTCTCATAAAAA 58.421 36.000 0.00 0.00 31.06 1.94
3856 4062 6.156748 TCGATCCGAATCCTTCTCATAAAA 57.843 37.500 0.00 0.00 31.06 1.52
3857 4063 5.784578 TCGATCCGAATCCTTCTCATAAA 57.215 39.130 0.00 0.00 31.06 1.40
3864 4070 7.097834 ACCTTTATAATCGATCCGAATCCTTC 58.902 38.462 0.00 0.00 39.99 3.46
3887 4093 4.072131 TGCTTTGTACTTCTGATGGAACC 58.928 43.478 0.00 0.00 0.00 3.62
3892 4098 4.573900 AGGAGTGCTTTGTACTTCTGATG 58.426 43.478 0.00 0.00 32.97 3.07
3907 4113 1.402984 CGTTCACTGGTCTAGGAGTGC 60.403 57.143 10.82 0.00 39.61 4.40
3910 4116 1.473278 GGTCGTTCACTGGTCTAGGAG 59.527 57.143 0.00 0.00 0.00 3.69
3911 4117 1.202964 TGGTCGTTCACTGGTCTAGGA 60.203 52.381 0.00 0.00 0.00 2.94
3932 4138 1.738099 CTTGTTCCGGCGGAGACAG 60.738 63.158 29.30 20.36 27.25 3.51
3943 4149 2.479198 GCGTTAGCGGCTTGTTCC 59.521 61.111 8.26 0.00 38.78 3.62
3953 4159 6.324561 ACTAAATAGTACCCTAGCGTTAGC 57.675 41.667 0.00 0.00 38.07 3.09
3970 4176 6.338937 CGAGGGAGTACAAAGCTAACTAAAT 58.661 40.000 0.00 0.00 0.00 1.40
3980 4186 0.175989 GGAGCCGAGGGAGTACAAAG 59.824 60.000 0.00 0.00 0.00 2.77
3984 4190 0.611714 TTTTGGAGCCGAGGGAGTAC 59.388 55.000 0.00 0.00 0.00 2.73
3985 4191 1.580059 ATTTTGGAGCCGAGGGAGTA 58.420 50.000 0.00 0.00 0.00 2.59
3986 4192 1.580059 TATTTTGGAGCCGAGGGAGT 58.420 50.000 0.00 0.00 0.00 3.85
3987 4193 2.938956 ATATTTTGGAGCCGAGGGAG 57.061 50.000 0.00 0.00 0.00 4.30
3988 4194 3.071023 CACTATATTTTGGAGCCGAGGGA 59.929 47.826 0.00 0.00 0.00 4.20
3989 4195 3.403038 CACTATATTTTGGAGCCGAGGG 58.597 50.000 0.00 0.00 0.00 4.30
3990 4196 2.808543 GCACTATATTTTGGAGCCGAGG 59.191 50.000 0.00 0.00 0.00 4.63
3991 4197 3.733337 AGCACTATATTTTGGAGCCGAG 58.267 45.455 0.00 0.00 0.00 4.63
3992 4198 3.838244 AGCACTATATTTTGGAGCCGA 57.162 42.857 0.00 0.00 0.00 5.54
3993 4199 5.934625 AGAATAGCACTATATTTTGGAGCCG 59.065 40.000 0.00 0.00 0.00 5.52
3994 4200 6.091441 CGAGAATAGCACTATATTTTGGAGCC 59.909 42.308 0.00 0.00 0.00 4.70
3995 4201 6.647067 ACGAGAATAGCACTATATTTTGGAGC 59.353 38.462 0.00 0.00 0.00 4.70
3996 4202 7.359598 GCACGAGAATAGCACTATATTTTGGAG 60.360 40.741 0.00 0.00 0.00 3.86
3997 4203 6.423905 GCACGAGAATAGCACTATATTTTGGA 59.576 38.462 0.00 0.00 0.00 3.53
3998 4204 6.425114 AGCACGAGAATAGCACTATATTTTGG 59.575 38.462 0.00 0.00 0.00 3.28
3999 4205 7.413475 AGCACGAGAATAGCACTATATTTTG 57.587 36.000 0.00 0.00 0.00 2.44
4000 4206 7.710907 TGAAGCACGAGAATAGCACTATATTTT 59.289 33.333 0.00 0.00 0.00 1.82
4001 4207 7.210174 TGAAGCACGAGAATAGCACTATATTT 58.790 34.615 0.00 0.00 0.00 1.40
4002 4208 6.749139 TGAAGCACGAGAATAGCACTATATT 58.251 36.000 0.00 0.00 0.00 1.28
4003 4209 6.332735 TGAAGCACGAGAATAGCACTATAT 57.667 37.500 0.00 0.00 0.00 0.86
4004 4210 5.767816 TGAAGCACGAGAATAGCACTATA 57.232 39.130 0.00 0.00 0.00 1.31
4005 4211 4.655762 TGAAGCACGAGAATAGCACTAT 57.344 40.909 0.00 0.00 0.00 2.12
4006 4212 4.082190 AGTTGAAGCACGAGAATAGCACTA 60.082 41.667 0.00 0.00 0.00 2.74
4007 4213 2.996621 GTTGAAGCACGAGAATAGCACT 59.003 45.455 0.00 0.00 0.00 4.40
4008 4214 2.996621 AGTTGAAGCACGAGAATAGCAC 59.003 45.455 0.00 0.00 0.00 4.40
4009 4215 3.319137 AGTTGAAGCACGAGAATAGCA 57.681 42.857 0.00 0.00 0.00 3.49
4010 4216 4.152402 TCAAAGTTGAAGCACGAGAATAGC 59.848 41.667 0.00 0.00 33.55 2.97
4011 4217 5.389935 GGTCAAAGTTGAAGCACGAGAATAG 60.390 44.000 0.00 0.00 39.21 1.73
4012 4218 4.451096 GGTCAAAGTTGAAGCACGAGAATA 59.549 41.667 0.00 0.00 39.21 1.75
4013 4219 3.251004 GGTCAAAGTTGAAGCACGAGAAT 59.749 43.478 0.00 0.00 39.21 2.40
4014 4220 2.612212 GGTCAAAGTTGAAGCACGAGAA 59.388 45.455 0.00 0.00 39.21 2.87
4015 4221 2.210116 GGTCAAAGTTGAAGCACGAGA 58.790 47.619 0.00 0.00 39.21 4.04
4016 4222 1.939934 TGGTCAAAGTTGAAGCACGAG 59.060 47.619 0.00 0.00 39.21 4.18
4017 4223 2.031258 TGGTCAAAGTTGAAGCACGA 57.969 45.000 0.00 0.00 39.21 4.35
4018 4224 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
4019 4225 7.713764 AAATTTATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
4020 4226 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
4021 4227 9.476202 AGTTAAATTTATGGTCAAAGTTGAAGC 57.524 29.630 0.00 0.00 39.21 3.86
4025 4231 9.061610 CGCTAGTTAAATTTATGGTCAAAGTTG 57.938 33.333 0.00 0.00 29.44 3.16
4026 4232 9.005777 TCGCTAGTTAAATTTATGGTCAAAGTT 57.994 29.630 0.00 0.00 31.36 2.66
4027 4233 8.556213 TCGCTAGTTAAATTTATGGTCAAAGT 57.444 30.769 0.00 0.00 0.00 2.66
4028 4234 8.879759 TCTCGCTAGTTAAATTTATGGTCAAAG 58.120 33.333 0.00 0.00 0.00 2.77
4029 4235 8.662141 GTCTCGCTAGTTAAATTTATGGTCAAA 58.338 33.333 0.00 0.00 0.00 2.69
4030 4236 7.279313 GGTCTCGCTAGTTAAATTTATGGTCAA 59.721 37.037 0.00 0.00 0.00 3.18
4031 4237 6.759827 GGTCTCGCTAGTTAAATTTATGGTCA 59.240 38.462 0.00 0.00 0.00 4.02
4032 4238 6.074463 CGGTCTCGCTAGTTAAATTTATGGTC 60.074 42.308 0.00 0.00 0.00 4.02
4033 4239 5.751990 CGGTCTCGCTAGTTAAATTTATGGT 59.248 40.000 0.00 0.00 0.00 3.55
4034 4240 5.981315 TCGGTCTCGCTAGTTAAATTTATGG 59.019 40.000 0.00 0.00 36.13 2.74
4035 4241 6.474427 TGTCGGTCTCGCTAGTTAAATTTATG 59.526 38.462 0.00 0.00 36.13 1.90
4036 4242 6.567050 TGTCGGTCTCGCTAGTTAAATTTAT 58.433 36.000 0.00 0.00 36.13 1.40
4037 4243 5.953183 TGTCGGTCTCGCTAGTTAAATTTA 58.047 37.500 0.00 0.00 36.13 1.40
4038 4244 4.813027 TGTCGGTCTCGCTAGTTAAATTT 58.187 39.130 0.00 0.00 36.13 1.82
4039 4245 4.445452 TGTCGGTCTCGCTAGTTAAATT 57.555 40.909 0.00 0.00 36.13 1.82
4040 4246 4.171754 GTTGTCGGTCTCGCTAGTTAAAT 58.828 43.478 0.00 0.00 36.13 1.40
4041 4247 3.568538 GTTGTCGGTCTCGCTAGTTAAA 58.431 45.455 0.00 0.00 36.13 1.52
4042 4248 2.413239 CGTTGTCGGTCTCGCTAGTTAA 60.413 50.000 0.00 0.00 36.13 2.01
4043 4249 1.129251 CGTTGTCGGTCTCGCTAGTTA 59.871 52.381 0.00 0.00 36.13 2.24
4044 4250 0.109873 CGTTGTCGGTCTCGCTAGTT 60.110 55.000 0.00 0.00 36.13 2.24
4045 4251 1.500844 CGTTGTCGGTCTCGCTAGT 59.499 57.895 0.00 0.00 36.13 2.57
4046 4252 4.361827 CGTTGTCGGTCTCGCTAG 57.638 61.111 0.00 0.00 36.13 3.42
4057 4263 2.458006 CTTTTGCTCCCGCCGTTGTC 62.458 60.000 0.00 0.00 34.43 3.18
4058 4264 2.517402 TTTTGCTCCCGCCGTTGT 60.517 55.556 0.00 0.00 34.43 3.32
4059 4265 2.070654 AACTTTTGCTCCCGCCGTTG 62.071 55.000 0.00 0.00 34.43 4.10
4060 4266 0.535553 TAACTTTTGCTCCCGCCGTT 60.536 50.000 0.00 0.00 34.43 4.44
4061 4267 0.322187 ATAACTTTTGCTCCCGCCGT 60.322 50.000 0.00 0.00 34.43 5.68
4062 4268 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
4063 4269 1.674441 GGTATAACTTTTGCTCCCGCC 59.326 52.381 0.00 0.00 34.43 6.13
4064 4270 2.354821 CTGGTATAACTTTTGCTCCCGC 59.645 50.000 0.00 0.00 0.00 6.13
4065 4271 3.374058 CACTGGTATAACTTTTGCTCCCG 59.626 47.826 0.00 0.00 0.00 5.14
4066 4272 4.585879 TCACTGGTATAACTTTTGCTCCC 58.414 43.478 0.00 0.00 0.00 4.30
4067 4273 6.759497 ATTCACTGGTATAACTTTTGCTCC 57.241 37.500 0.00 0.00 0.00 4.70
4068 4274 6.961554 CGAATTCACTGGTATAACTTTTGCTC 59.038 38.462 6.22 0.00 0.00 4.26
4069 4275 6.430000 ACGAATTCACTGGTATAACTTTTGCT 59.570 34.615 6.22 0.00 0.00 3.91
4070 4276 6.608610 ACGAATTCACTGGTATAACTTTTGC 58.391 36.000 6.22 0.00 0.00 3.68
4123 4329 1.652012 CCTCCGTTGCGCAGAAAAA 59.348 52.632 11.31 0.00 0.00 1.94
4124 4330 2.258013 CCCTCCGTTGCGCAGAAAA 61.258 57.895 11.31 0.00 0.00 2.29
4125 4331 2.668212 CCCTCCGTTGCGCAGAAA 60.668 61.111 11.31 0.00 0.00 2.52
4126 4332 3.589654 CTCCCTCCGTTGCGCAGAA 62.590 63.158 11.31 0.00 0.00 3.02
4127 4333 4.069232 CTCCCTCCGTTGCGCAGA 62.069 66.667 11.31 3.53 0.00 4.26
4128 4334 3.001902 TACTCCCTCCGTTGCGCAG 62.002 63.158 11.31 0.00 0.00 5.18
4129 4335 2.992689 TACTCCCTCCGTTGCGCA 60.993 61.111 5.66 5.66 0.00 6.09
4130 4336 1.660560 TAGTACTCCCTCCGTTGCGC 61.661 60.000 0.00 0.00 0.00 6.09
4131 4337 0.813184 TTAGTACTCCCTCCGTTGCG 59.187 55.000 0.00 0.00 0.00 4.85
4132 4338 3.323751 TTTTAGTACTCCCTCCGTTGC 57.676 47.619 0.00 0.00 0.00 4.17
4133 4339 4.081309 TGGATTTTAGTACTCCCTCCGTTG 60.081 45.833 0.00 0.00 0.00 4.10
4134 4340 4.098894 TGGATTTTAGTACTCCCTCCGTT 58.901 43.478 0.00 0.00 0.00 4.44
4135 4341 3.716431 TGGATTTTAGTACTCCCTCCGT 58.284 45.455 0.00 0.00 0.00 4.69
4136 4342 4.589374 AGATGGATTTTAGTACTCCCTCCG 59.411 45.833 0.00 0.00 0.00 4.63
4137 4343 6.294620 CGTAGATGGATTTTAGTACTCCCTCC 60.295 46.154 0.00 2.73 0.00 4.30
4138 4344 6.489361 TCGTAGATGGATTTTAGTACTCCCTC 59.511 42.308 0.00 0.00 0.00 4.30
4139 4345 6.371278 TCGTAGATGGATTTTAGTACTCCCT 58.629 40.000 0.00 0.00 0.00 4.20
4140 4346 6.645790 TCGTAGATGGATTTTAGTACTCCC 57.354 41.667 0.00 0.00 0.00 4.30
4141 4347 7.808856 GTGATCGTAGATGGATTTTAGTACTCC 59.191 40.741 0.00 0.00 45.12 3.85
4142 4348 8.569641 AGTGATCGTAGATGGATTTTAGTACTC 58.430 37.037 0.00 0.00 45.12 2.59
4143 4349 8.466617 AGTGATCGTAGATGGATTTTAGTACT 57.533 34.615 0.00 0.00 45.12 2.73
4159 4365 5.926542 GCATGAGCCTAATTTAGTGATCGTA 59.073 40.000 0.00 0.00 33.58 3.43
4161 4367 4.751600 TGCATGAGCCTAATTTAGTGATCG 59.248 41.667 0.00 0.00 41.13 3.69
4174 4380 1.072806 TCAAAGTGACTGCATGAGCCT 59.927 47.619 0.00 0.00 41.13 4.58
4177 4383 4.001652 AGTGATCAAAGTGACTGCATGAG 58.998 43.478 0.00 0.00 0.00 2.90
4187 4393 7.173907 ACAGTCTAAAATCCAGTGATCAAAGTG 59.826 37.037 0.00 0.00 0.00 3.16
4210 4416 8.446273 CAACCTTACTGATTGTAAATCAGACAG 58.554 37.037 28.08 22.00 46.25 3.51
4237 4443 1.939934 GCCATCATAGCTGCACGTAAA 59.060 47.619 1.02 0.00 0.00 2.01
4241 4447 0.237498 CATGCCATCATAGCTGCACG 59.763 55.000 1.02 0.00 36.41 5.34
4249 4456 4.170449 ACCCTAGTGATCATGCCATCATA 58.830 43.478 0.00 0.00 35.23 2.15
4275 4482 2.094675 CAAATCCAGTAGCCAACCCTG 58.905 52.381 0.00 0.00 0.00 4.45
4279 4486 1.165270 ACGCAAATCCAGTAGCCAAC 58.835 50.000 0.00 0.00 0.00 3.77
4297 4504 8.684973 ATTCTTCAGACTGTATGTTACGTTAC 57.315 34.615 1.59 0.00 0.00 2.50
4302 4509 7.813852 ACGAATTCTTCAGACTGTATGTTAC 57.186 36.000 3.52 0.00 0.00 2.50
4303 4510 8.737175 AGTACGAATTCTTCAGACTGTATGTTA 58.263 33.333 3.52 0.00 0.00 2.41
4305 4512 7.159322 AGTACGAATTCTTCAGACTGTATGT 57.841 36.000 3.52 0.00 0.00 2.29
4310 4517 4.082190 TGGGAGTACGAATTCTTCAGACTG 60.082 45.833 3.52 0.00 0.00 3.51
4314 4521 3.557595 GCATGGGAGTACGAATTCTTCAG 59.442 47.826 3.52 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.