Multiple sequence alignment - TraesCS4B01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G292100 chr4B 100.000 6323 0 0 1 6323 577650119 577656441 0.000000e+00 11677.0
1 TraesCS4B01G292100 chr4D 94.923 4156 154 15 832 4955 461780730 461784860 0.000000e+00 6453.0
2 TraesCS4B01G292100 chr4D 91.707 627 46 5 2780 3402 136757407 136756783 0.000000e+00 865.0
3 TraesCS4B01G292100 chr4D 93.750 272 15 2 330 601 461776055 461776324 2.120000e-109 407.0
4 TraesCS4B01G292100 chr4D 89.759 332 11 7 5565 5873 461785455 461785786 2.750000e-108 403.0
5 TraesCS4B01G292100 chr4D 85.250 400 40 12 4975 5365 461784933 461785322 1.650000e-105 394.0
6 TraesCS4B01G292100 chr4D 96.212 132 5 0 597 728 461778380 461778511 3.840000e-52 217.0
7 TraesCS4B01G292100 chr4D 87.574 169 5 4 5868 6020 461787881 461788049 1.400000e-41 182.0
8 TraesCS4B01G292100 chr4D 96.774 62 2 0 742 803 461778631 461778692 3.120000e-18 104.0
9 TraesCS4B01G292100 chr4D 93.548 62 3 1 802 863 461778853 461778913 2.430000e-14 91.6
10 TraesCS4B01G292100 chr4D 97.368 38 1 0 1477 1514 461781328 461781365 1.470000e-06 65.8
11 TraesCS4B01G292100 chr4A 94.654 2974 118 15 2609 5557 6935475 6932518 0.000000e+00 4573.0
12 TraesCS4B01G292100 chr4A 93.804 694 31 5 784 1474 6937871 6937187 0.000000e+00 1033.0
13 TraesCS4B01G292100 chr4A 96.408 529 18 1 2100 2627 6936171 6935643 0.000000e+00 870.0
14 TraesCS4B01G292100 chr4A 80.176 1024 144 34 4524 5530 737224315 737223334 0.000000e+00 712.0
15 TraesCS4B01G292100 chr4A 94.792 384 18 2 1814 2196 6936554 6936172 1.170000e-166 597.0
16 TraesCS4B01G292100 chr4A 90.476 399 37 1 330 728 6938735 6938338 5.620000e-145 525.0
17 TraesCS4B01G292100 chr4A 91.239 331 16 3 1477 1798 6937224 6936898 7.530000e-119 438.0
18 TraesCS4B01G292100 chr4A 85.941 441 19 13 5565 5962 6932323 6931883 1.260000e-116 431.0
19 TraesCS4B01G292100 chr4A 83.616 354 17 14 5982 6323 6931823 6931499 1.720000e-75 294.0
20 TraesCS4B01G292100 chr5D 92.344 627 42 5 2780 3402 3683758 3683134 0.000000e+00 887.0
21 TraesCS4B01G292100 chr3D 92.344 627 43 4 2780 3402 236203761 236204386 0.000000e+00 887.0
22 TraesCS4B01G292100 chr3D 91.866 627 46 4 2780 3402 236248508 236249133 0.000000e+00 870.0
23 TraesCS4B01G292100 chr3D 91.793 329 20 6 9 334 172978093 172978417 9.670000e-123 451.0
24 TraesCS4B01G292100 chr5B 92.185 627 44 4 2780 3402 521517998 521517373 0.000000e+00 881.0
25 TraesCS4B01G292100 chr5B 91.720 628 46 5 2780 3402 521537001 521536375 0.000000e+00 867.0
26 TraesCS4B01G292100 chr5B 90.590 627 54 4 2780 3402 521584869 521584244 0.000000e+00 826.0
27 TraesCS4B01G292100 chr5B 91.793 329 19 7 9 333 228234711 228235035 9.670000e-123 451.0
28 TraesCS4B01G292100 chr6B 79.785 1024 137 37 4524 5531 520734412 520733443 0.000000e+00 680.0
29 TraesCS4B01G292100 chr2A 80.829 772 99 25 4524 5287 404604468 404603738 1.540000e-155 560.0
30 TraesCS4B01G292100 chr2A 80.603 763 100 26 4533 5287 402685538 402684816 4.310000e-151 545.0
31 TraesCS4B01G292100 chr2A 80.868 737 97 28 4813 5531 139432042 139431332 2.010000e-149 540.0
32 TraesCS4B01G292100 chr7A 80.966 725 101 22 4821 5531 718476735 718476034 2.010000e-149 540.0
33 TraesCS4B01G292100 chr2D 92.966 327 15 7 10 333 276950606 276950927 2.670000e-128 470.0
34 TraesCS4B01G292100 chr2D 92.705 329 15 7 9 333 5782603 5782280 3.450000e-127 466.0
35 TraesCS4B01G292100 chr2D 91.975 324 20 5 11 333 200880380 200880698 3.480000e-122 449.0
36 TraesCS4B01G292100 chr2D 91.768 328 20 6 9 333 356758749 356758426 3.480000e-122 449.0
37 TraesCS4B01G292100 chr2D 91.768 328 20 6 9 333 582121559 582121236 3.480000e-122 449.0
38 TraesCS4B01G292100 chr2D 90.855 339 20 9 9 341 308017944 308018277 1.620000e-120 444.0
39 TraesCS4B01G292100 chr1D 91.743 327 21 5 9 333 160993905 160994227 3.480000e-122 449.0
40 TraesCS4B01G292100 chr1B 94.118 68 4 0 4597 4664 513248873 513248806 3.120000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G292100 chr4B 577650119 577656441 6322 False 11677.000000 11677 100.000000 1 6323 1 chr4B.!!$F1 6322
1 TraesCS4B01G292100 chr4D 461776055 461788049 11994 False 924.155556 6453 92.795333 330 6020 9 chr4D.!!$F1 5690
2 TraesCS4B01G292100 chr4D 136756783 136757407 624 True 865.000000 865 91.707000 2780 3402 1 chr4D.!!$R1 622
3 TraesCS4B01G292100 chr4A 6931499 6938735 7236 True 1095.125000 4573 91.366250 330 6323 8 chr4A.!!$R2 5993
4 TraesCS4B01G292100 chr4A 737223334 737224315 981 True 712.000000 712 80.176000 4524 5530 1 chr4A.!!$R1 1006
5 TraesCS4B01G292100 chr5D 3683134 3683758 624 True 887.000000 887 92.344000 2780 3402 1 chr5D.!!$R1 622
6 TraesCS4B01G292100 chr3D 236203761 236204386 625 False 887.000000 887 92.344000 2780 3402 1 chr3D.!!$F2 622
7 TraesCS4B01G292100 chr3D 236248508 236249133 625 False 870.000000 870 91.866000 2780 3402 1 chr3D.!!$F3 622
8 TraesCS4B01G292100 chr5B 521517373 521517998 625 True 881.000000 881 92.185000 2780 3402 1 chr5B.!!$R1 622
9 TraesCS4B01G292100 chr5B 521536375 521537001 626 True 867.000000 867 91.720000 2780 3402 1 chr5B.!!$R2 622
10 TraesCS4B01G292100 chr5B 521584244 521584869 625 True 826.000000 826 90.590000 2780 3402 1 chr5B.!!$R3 622
11 TraesCS4B01G292100 chr6B 520733443 520734412 969 True 680.000000 680 79.785000 4524 5531 1 chr6B.!!$R1 1007
12 TraesCS4B01G292100 chr2A 404603738 404604468 730 True 560.000000 560 80.829000 4524 5287 1 chr2A.!!$R3 763
13 TraesCS4B01G292100 chr2A 402684816 402685538 722 True 545.000000 545 80.603000 4533 5287 1 chr2A.!!$R2 754
14 TraesCS4B01G292100 chr2A 139431332 139432042 710 True 540.000000 540 80.868000 4813 5531 1 chr2A.!!$R1 718
15 TraesCS4B01G292100 chr7A 718476034 718476735 701 True 540.000000 540 80.966000 4821 5531 1 chr7A.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.108615 CGTGGCTCTTCCGACTTGAT 60.109 55.000 0.00 0.00 37.80 2.57 F
154 155 0.178533 TCGTTTGGACTCCGTTTGGT 59.821 50.000 0.00 0.00 36.30 3.67 F
435 437 0.744414 CACAAATCGCCACCTCGGAT 60.744 55.000 0.00 0.00 36.56 4.18 F
1455 5872 0.108424 GCCAGCTCTGTCAGTACCAG 60.108 60.000 0.00 0.00 0.00 4.00 F
2048 6814 0.179048 TGGCACCACTCACTTCTGTG 60.179 55.000 0.00 0.00 45.07 3.66 F
2681 7733 2.168503 GTGACACACGACAACGCCA 61.169 57.895 0.00 0.00 43.96 5.69 F
2690 7742 2.671619 ACAACGCCAACCGGATGG 60.672 61.111 25.72 25.72 43.70 3.51 F
3190 8247 3.036633 CACAAGATCTTCGACGTATCCG 58.963 50.000 4.57 0.00 40.83 4.18 F
4716 9798 2.787473 ACTCATCATTCCGCTTCCAA 57.213 45.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1231 5648 0.029700 CCGACCCGAAACAAAACCAC 59.970 55.000 0.00 0.0 0.00 4.16 R
1436 5853 0.108424 CTGGTACTGACAGAGCTGGC 60.108 60.000 10.08 0.0 38.20 4.85 R
1594 6020 1.421268 TCACCAGTCAGTCAAGGCAAT 59.579 47.619 0.00 0.0 0.00 3.56 R
3345 8402 2.290641 GCAGAACTGAACGAACAATGGT 59.709 45.455 5.97 0.0 0.00 3.55 R
3346 8403 2.549754 AGCAGAACTGAACGAACAATGG 59.450 45.455 5.97 0.0 0.00 3.16 R
4181 9253 1.221466 GCAACACGAGTACTGCAGCA 61.221 55.000 15.27 0.0 32.90 4.41 R
4587 9668 6.291648 ACAGAAGCAGAGAAGATGTAATGA 57.708 37.500 0.00 0.0 0.00 2.57 R
5043 10180 0.240945 ATGCCAACAGTTAAGCGCAC 59.759 50.000 11.47 0.0 0.00 5.34 R
5631 10977 0.179081 GGGTACATCTTCCGTGCCTC 60.179 60.000 0.00 0.0 38.97 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.355115 CACAAGGGTGGGTAGGGC 59.645 66.667 0.00 0.00 41.45 5.19
35 36 3.327404 ACAAGGGTGGGTAGGGCG 61.327 66.667 0.00 0.00 0.00 6.13
36 37 4.796495 CAAGGGTGGGTAGGGCGC 62.796 72.222 0.00 0.00 0.00 6.53
52 53 4.785453 GCGCCCTCCTCCTTGTGG 62.785 72.222 0.00 0.00 0.00 4.17
53 54 4.785453 CGCCCTCCTCCTTGTGGC 62.785 72.222 0.00 0.00 38.74 5.01
54 55 4.432741 GCCCTCCTCCTTGTGGCC 62.433 72.222 0.00 0.00 36.07 5.36
55 56 2.935481 CCCTCCTCCTTGTGGCCA 60.935 66.667 0.00 0.00 0.00 5.36
56 57 2.352805 CCTCCTCCTTGTGGCCAC 59.647 66.667 29.67 29.67 0.00 5.01
57 58 2.352805 CTCCTCCTTGTGGCCACC 59.647 66.667 32.62 15.42 0.00 4.61
58 59 2.121963 TCCTCCTTGTGGCCACCT 60.122 61.111 32.62 0.00 0.00 4.00
59 60 2.190488 CTCCTCCTTGTGGCCACCTC 62.190 65.000 32.62 9.38 0.00 3.85
60 61 2.046892 CTCCTTGTGGCCACCTCG 60.047 66.667 32.62 19.56 0.00 4.63
61 62 2.847234 TCCTTGTGGCCACCTCGT 60.847 61.111 32.62 0.00 0.00 4.18
62 63 2.669569 CCTTGTGGCCACCTCGTG 60.670 66.667 32.62 16.76 0.00 4.35
71 72 2.125912 CACCTCGTGGCTCTTCCG 60.126 66.667 2.76 0.00 37.80 4.30
72 73 2.282958 ACCTCGTGGCTCTTCCGA 60.283 61.111 2.76 0.00 37.80 4.55
73 74 2.182030 CCTCGTGGCTCTTCCGAC 59.818 66.667 0.00 0.00 37.80 4.79
74 75 2.344203 CCTCGTGGCTCTTCCGACT 61.344 63.158 0.00 0.00 37.80 4.18
75 76 1.587054 CTCGTGGCTCTTCCGACTT 59.413 57.895 0.00 0.00 37.80 3.01
76 77 0.734253 CTCGTGGCTCTTCCGACTTG 60.734 60.000 0.00 0.00 37.80 3.16
77 78 1.176619 TCGTGGCTCTTCCGACTTGA 61.177 55.000 0.00 0.00 37.80 3.02
78 79 0.108615 CGTGGCTCTTCCGACTTGAT 60.109 55.000 0.00 0.00 37.80 2.57
79 80 1.646189 GTGGCTCTTCCGACTTGATC 58.354 55.000 0.00 0.00 37.80 2.92
80 81 1.205893 GTGGCTCTTCCGACTTGATCT 59.794 52.381 0.00 0.00 37.80 2.75
81 82 1.902508 TGGCTCTTCCGACTTGATCTT 59.097 47.619 0.00 0.00 37.80 2.40
82 83 2.093973 TGGCTCTTCCGACTTGATCTTC 60.094 50.000 0.00 0.00 37.80 2.87
83 84 2.093973 GGCTCTTCCGACTTGATCTTCA 60.094 50.000 0.00 0.00 0.00 3.02
84 85 3.589988 GCTCTTCCGACTTGATCTTCAA 58.410 45.455 0.00 0.00 34.79 2.69
94 95 3.871485 CTTGATCTTCAAGTCTCTGGGG 58.129 50.000 8.72 0.00 46.50 4.96
95 96 2.907892 TGATCTTCAAGTCTCTGGGGT 58.092 47.619 0.00 0.00 0.00 4.95
96 97 2.568956 TGATCTTCAAGTCTCTGGGGTG 59.431 50.000 0.00 0.00 0.00 4.61
97 98 2.103153 TCTTCAAGTCTCTGGGGTGT 57.897 50.000 0.00 0.00 0.00 4.16
98 99 1.971357 TCTTCAAGTCTCTGGGGTGTC 59.029 52.381 0.00 0.00 0.00 3.67
99 100 1.974236 CTTCAAGTCTCTGGGGTGTCT 59.026 52.381 0.00 0.00 0.00 3.41
100 101 2.103153 TCAAGTCTCTGGGGTGTCTT 57.897 50.000 0.00 0.00 0.00 3.01
101 102 1.971357 TCAAGTCTCTGGGGTGTCTTC 59.029 52.381 0.00 0.00 0.00 2.87
102 103 1.974236 CAAGTCTCTGGGGTGTCTTCT 59.026 52.381 0.00 0.00 0.00 2.85
103 104 1.638529 AGTCTCTGGGGTGTCTTCTG 58.361 55.000 0.00 0.00 0.00 3.02
104 105 0.610687 GTCTCTGGGGTGTCTTCTGG 59.389 60.000 0.00 0.00 0.00 3.86
105 106 0.191064 TCTCTGGGGTGTCTTCTGGT 59.809 55.000 0.00 0.00 0.00 4.00
106 107 0.610687 CTCTGGGGTGTCTTCTGGTC 59.389 60.000 0.00 0.00 0.00 4.02
107 108 0.836400 TCTGGGGTGTCTTCTGGTCC 60.836 60.000 0.00 0.00 0.00 4.46
108 109 1.074090 TGGGGTGTCTTCTGGTCCA 60.074 57.895 0.00 0.00 0.00 4.02
109 110 0.696143 TGGGGTGTCTTCTGGTCCAA 60.696 55.000 0.00 0.00 0.00 3.53
110 111 0.476771 GGGGTGTCTTCTGGTCCAAA 59.523 55.000 0.00 0.00 0.00 3.28
111 112 1.133606 GGGGTGTCTTCTGGTCCAAAA 60.134 52.381 0.00 0.00 0.00 2.44
112 113 2.661718 GGGTGTCTTCTGGTCCAAAAA 58.338 47.619 0.00 0.00 0.00 1.94
132 133 4.497473 AAAAATCATCGCGAAGGTTTCA 57.503 36.364 21.33 0.00 0.00 2.69
133 134 4.701956 AAAATCATCGCGAAGGTTTCAT 57.298 36.364 21.33 5.80 0.00 2.57
134 135 4.701956 AAATCATCGCGAAGGTTTCATT 57.298 36.364 16.21 3.32 0.00 2.57
135 136 4.701956 AATCATCGCGAAGGTTTCATTT 57.298 36.364 15.24 0.00 0.00 2.32
136 137 3.740044 TCATCGCGAAGGTTTCATTTC 57.260 42.857 15.24 0.00 0.00 2.17
137 138 2.093625 TCATCGCGAAGGTTTCATTTCG 59.906 45.455 15.24 2.55 46.51 3.46
138 139 1.504359 TCGCGAAGGTTTCATTTCGT 58.496 45.000 6.20 0.00 45.76 3.85
139 140 1.868498 TCGCGAAGGTTTCATTTCGTT 59.132 42.857 6.20 0.00 45.76 3.85
140 141 2.288458 TCGCGAAGGTTTCATTTCGTTT 59.712 40.909 6.20 0.00 45.76 3.60
141 142 2.400408 CGCGAAGGTTTCATTTCGTTTG 59.600 45.455 0.00 0.00 45.76 2.93
142 143 2.724174 GCGAAGGTTTCATTTCGTTTGG 59.276 45.455 8.20 0.00 45.76 3.28
143 144 3.549221 GCGAAGGTTTCATTTCGTTTGGA 60.549 43.478 8.20 0.00 45.76 3.53
144 145 3.972502 CGAAGGTTTCATTTCGTTTGGAC 59.027 43.478 0.00 0.00 40.79 4.02
145 146 4.261031 CGAAGGTTTCATTTCGTTTGGACT 60.261 41.667 0.00 0.00 40.79 3.85
146 147 4.830826 AGGTTTCATTTCGTTTGGACTC 57.169 40.909 0.00 0.00 0.00 3.36
147 148 3.568430 AGGTTTCATTTCGTTTGGACTCC 59.432 43.478 0.00 0.00 0.00 3.85
148 149 3.551551 GTTTCATTTCGTTTGGACTCCG 58.448 45.455 0.00 0.00 0.00 4.63
149 150 2.536761 TCATTTCGTTTGGACTCCGT 57.463 45.000 0.00 0.00 0.00 4.69
150 151 2.841215 TCATTTCGTTTGGACTCCGTT 58.159 42.857 0.00 0.00 0.00 4.44
151 152 3.207778 TCATTTCGTTTGGACTCCGTTT 58.792 40.909 0.00 0.00 0.00 3.60
152 153 3.002862 TCATTTCGTTTGGACTCCGTTTG 59.997 43.478 0.00 0.00 0.00 2.93
153 154 1.301423 TTCGTTTGGACTCCGTTTGG 58.699 50.000 0.00 0.00 0.00 3.28
154 155 0.178533 TCGTTTGGACTCCGTTTGGT 59.821 50.000 0.00 0.00 36.30 3.67
155 156 1.411977 TCGTTTGGACTCCGTTTGGTA 59.588 47.619 0.00 0.00 36.30 3.25
156 157 2.037511 TCGTTTGGACTCCGTTTGGTAT 59.962 45.455 0.00 0.00 36.30 2.73
157 158 2.809696 CGTTTGGACTCCGTTTGGTATT 59.190 45.455 0.00 0.00 36.30 1.89
158 159 3.120442 CGTTTGGACTCCGTTTGGTATTC 60.120 47.826 0.00 0.00 36.30 1.75
159 160 2.773993 TGGACTCCGTTTGGTATTCC 57.226 50.000 0.00 0.00 36.30 3.01
160 161 2.262637 TGGACTCCGTTTGGTATTCCT 58.737 47.619 0.00 0.00 36.30 3.36
161 162 2.640826 TGGACTCCGTTTGGTATTCCTT 59.359 45.455 0.00 0.00 36.30 3.36
162 163 3.073356 TGGACTCCGTTTGGTATTCCTTT 59.927 43.478 0.00 0.00 36.30 3.11
163 164 4.077108 GGACTCCGTTTGGTATTCCTTTT 58.923 43.478 0.00 0.00 36.30 2.27
164 165 4.155462 GGACTCCGTTTGGTATTCCTTTTC 59.845 45.833 0.00 0.00 36.30 2.29
165 166 4.981812 ACTCCGTTTGGTATTCCTTTTCT 58.018 39.130 0.00 0.00 36.30 2.52
166 167 4.760204 ACTCCGTTTGGTATTCCTTTTCTG 59.240 41.667 0.00 0.00 36.30 3.02
167 168 3.504520 TCCGTTTGGTATTCCTTTTCTGC 59.495 43.478 0.00 0.00 36.30 4.26
168 169 3.488489 CGTTTGGTATTCCTTTTCTGCG 58.512 45.455 0.00 0.00 34.23 5.18
169 170 3.187637 CGTTTGGTATTCCTTTTCTGCGA 59.812 43.478 0.00 0.00 34.23 5.10
170 171 4.319911 CGTTTGGTATTCCTTTTCTGCGAA 60.320 41.667 0.00 0.00 34.23 4.70
171 172 5.525199 GTTTGGTATTCCTTTTCTGCGAAA 58.475 37.500 0.00 0.55 34.23 3.46
172 173 4.759516 TGGTATTCCTTTTCTGCGAAAC 57.240 40.909 3.71 0.00 34.23 2.78
173 174 4.394729 TGGTATTCCTTTTCTGCGAAACT 58.605 39.130 3.71 0.00 34.23 2.66
174 175 4.454504 TGGTATTCCTTTTCTGCGAAACTC 59.545 41.667 3.71 0.00 34.23 3.01
175 176 4.454504 GGTATTCCTTTTCTGCGAAACTCA 59.545 41.667 3.71 0.00 0.00 3.41
176 177 5.048991 GGTATTCCTTTTCTGCGAAACTCAA 60.049 40.000 3.71 0.00 0.00 3.02
177 178 4.974368 TTCCTTTTCTGCGAAACTCAAA 57.026 36.364 3.71 0.00 0.00 2.69
178 179 4.974368 TCCTTTTCTGCGAAACTCAAAA 57.026 36.364 3.71 0.00 0.00 2.44
179 180 5.317733 TCCTTTTCTGCGAAACTCAAAAA 57.682 34.783 3.71 0.00 0.00 1.94
180 181 5.099575 TCCTTTTCTGCGAAACTCAAAAAC 58.900 37.500 3.71 0.00 0.00 2.43
181 182 4.862018 CCTTTTCTGCGAAACTCAAAAACA 59.138 37.500 3.71 0.00 0.00 2.83
182 183 5.347364 CCTTTTCTGCGAAACTCAAAAACAA 59.653 36.000 3.71 0.00 0.00 2.83
183 184 6.388259 TTTTCTGCGAAACTCAAAAACAAG 57.612 33.333 3.71 0.00 0.00 3.16
184 185 4.027572 TCTGCGAAACTCAAAAACAAGG 57.972 40.909 0.00 0.00 0.00 3.61
185 186 3.692101 TCTGCGAAACTCAAAAACAAGGA 59.308 39.130 0.00 0.00 0.00 3.36
186 187 4.156922 TCTGCGAAACTCAAAAACAAGGAA 59.843 37.500 0.00 0.00 0.00 3.36
187 188 4.810790 TGCGAAACTCAAAAACAAGGAAA 58.189 34.783 0.00 0.00 0.00 3.13
188 189 5.230942 TGCGAAACTCAAAAACAAGGAAAA 58.769 33.333 0.00 0.00 0.00 2.29
189 190 5.696724 TGCGAAACTCAAAAACAAGGAAAAA 59.303 32.000 0.00 0.00 0.00 1.94
206 207 3.525268 AAAAACAGAAACTGGCACTGG 57.475 42.857 7.62 0.00 35.51 4.00
207 208 1.402787 AAACAGAAACTGGCACTGGG 58.597 50.000 7.62 0.00 35.51 4.45
208 209 1.109323 AACAGAAACTGGCACTGGGC 61.109 55.000 7.62 0.00 43.74 5.36
220 221 3.790089 GCACTGGGCCTAGGTTAATAT 57.210 47.619 21.53 0.00 36.11 1.28
221 222 3.412386 GCACTGGGCCTAGGTTAATATG 58.588 50.000 21.53 8.61 36.11 1.78
222 223 3.181443 GCACTGGGCCTAGGTTAATATGT 60.181 47.826 21.53 0.00 36.11 2.29
223 224 4.688874 GCACTGGGCCTAGGTTAATATGTT 60.689 45.833 21.53 0.00 36.11 2.71
224 225 5.455612 GCACTGGGCCTAGGTTAATATGTTA 60.456 44.000 21.53 0.00 36.11 2.41
225 226 6.231211 CACTGGGCCTAGGTTAATATGTTAG 58.769 44.000 21.53 0.00 0.00 2.34
226 227 5.909417 ACTGGGCCTAGGTTAATATGTTAGT 59.091 40.000 21.53 0.00 0.00 2.24
227 228 6.042897 ACTGGGCCTAGGTTAATATGTTAGTC 59.957 42.308 21.53 0.00 0.00 2.59
228 229 5.308759 TGGGCCTAGGTTAATATGTTAGTCC 59.691 44.000 11.31 0.00 0.00 3.85
229 230 5.280368 GGGCCTAGGTTAATATGTTAGTCCC 60.280 48.000 11.31 3.05 0.00 4.46
230 231 5.280368 GGCCTAGGTTAATATGTTAGTCCCC 60.280 48.000 11.31 0.00 0.00 4.81
231 232 5.308759 GCCTAGGTTAATATGTTAGTCCCCA 59.691 44.000 11.31 0.00 0.00 4.96
232 233 6.183361 GCCTAGGTTAATATGTTAGTCCCCAA 60.183 42.308 11.31 0.00 0.00 4.12
233 234 7.638638 GCCTAGGTTAATATGTTAGTCCCCAAA 60.639 40.741 11.31 0.00 0.00 3.28
234 235 8.276477 CCTAGGTTAATATGTTAGTCCCCAAAA 58.724 37.037 0.00 0.00 0.00 2.44
235 236 9.689501 CTAGGTTAATATGTTAGTCCCCAAAAA 57.310 33.333 3.28 0.00 0.00 1.94
334 335 7.761038 ATACATATGTTGGAGACGTATCAGA 57.239 36.000 14.77 0.00 38.18 3.27
349 350 2.941453 TCAGACGCGAGCTAAAGAAT 57.059 45.000 15.93 0.00 0.00 2.40
369 370 1.768275 TGAGAAGACAAAGACTGGCCA 59.232 47.619 4.71 4.71 30.58 5.36
371 372 1.771255 AGAAGACAAAGACTGGCCAGT 59.229 47.619 38.42 38.42 45.84 4.00
412 413 2.202236 ATTCGCCACCACCATCTGCT 62.202 55.000 0.00 0.00 0.00 4.24
435 437 0.744414 CACAAATCGCCACCTCGGAT 60.744 55.000 0.00 0.00 36.56 4.18
447 449 2.430694 CACCTCGGATGACACTTCCATA 59.569 50.000 0.00 0.00 32.45 2.74
490 492 1.221840 CCGACATCCACAAGGGGAG 59.778 63.158 0.00 0.00 41.08 4.30
674 2736 4.862902 GCATGAGCTATCTAGGTGAAGA 57.137 45.455 0.00 0.00 37.91 2.87
730 2792 4.382320 GTGTCGGGGCGCCACTAA 62.382 66.667 29.20 12.48 0.00 2.24
733 2818 1.300697 GTCGGGGCGCCACTAATAG 60.301 63.158 29.20 11.16 0.00 1.73
794 2962 6.500684 TCAATAGGTTGCTCTTCAATTCAC 57.499 37.500 0.00 0.00 36.99 3.18
856 3425 1.799258 GCAAGACAAGTGCCACCAGG 61.799 60.000 0.00 0.00 35.91 4.45
935 5352 2.526046 CGGAAGACCCAACCACCCT 61.526 63.158 0.00 0.00 34.14 4.34
988 5405 1.515736 GCGCTACACTACACCGTCC 60.516 63.158 0.00 0.00 0.00 4.79
989 5406 1.138247 CGCTACACTACACCGTCCC 59.862 63.158 0.00 0.00 0.00 4.46
990 5407 1.514553 GCTACACTACACCGTCCCC 59.485 63.158 0.00 0.00 0.00 4.81
991 5408 1.805254 CTACACTACACCGTCCCCG 59.195 63.158 0.00 0.00 0.00 5.73
992 5409 0.962356 CTACACTACACCGTCCCCGT 60.962 60.000 0.00 0.00 0.00 5.28
993 5410 0.960364 TACACTACACCGTCCCCGTC 60.960 60.000 0.00 0.00 0.00 4.79
994 5411 1.975407 CACTACACCGTCCCCGTCT 60.975 63.158 0.00 0.00 0.00 4.18
1227 5644 1.961180 CTCCCCGGTTCGAGCTGATT 61.961 60.000 9.99 0.00 0.00 2.57
1436 5853 2.073816 ACGAACGAAGCCCTGTTATTG 58.926 47.619 0.14 0.00 0.00 1.90
1455 5872 0.108424 GCCAGCTCTGTCAGTACCAG 60.108 60.000 0.00 0.00 0.00 4.00
1492 5909 1.889829 AGTGACCAGCTCTGTCAGTAC 59.110 52.381 17.61 7.40 0.00 2.73
1581 6007 5.411669 CGGGAATTTATGGGTAGAAGCATAC 59.588 44.000 0.00 0.00 0.00 2.39
1585 6011 8.376270 GGAATTTATGGGTAGAAGCATACTACT 58.624 37.037 12.26 0.00 39.77 2.57
1594 6020 6.016192 GGTAGAAGCATACTACTGTAGCATCA 60.016 42.308 14.55 0.00 39.77 3.07
1597 6023 6.927936 AGAAGCATACTACTGTAGCATCATTG 59.072 38.462 14.55 5.18 30.57 2.82
1754 6180 3.119495 CCCCTTCTTAACGCAATGAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
1766 6192 3.737774 GCAATGAAAGGAGTGAAAACTGC 59.262 43.478 0.00 0.00 0.00 4.40
1769 6195 4.836125 TGAAAGGAGTGAAAACTGCATC 57.164 40.909 0.20 0.00 0.00 3.91
1826 6584 6.151312 TGCTCTCAAAGTTAGACTGTACTAGG 59.849 42.308 0.00 0.00 0.00 3.02
1888 6646 5.857517 GTCCGACAGTTCTTGAGTTACTAAG 59.142 44.000 0.00 0.00 0.00 2.18
1889 6647 4.621886 CCGACAGTTCTTGAGTTACTAAGC 59.378 45.833 0.00 0.00 0.00 3.09
2048 6814 0.179048 TGGCACCACTCACTTCTGTG 60.179 55.000 0.00 0.00 45.07 3.66
2071 6837 3.621558 AGCTTGCCCAATACTTACCTTC 58.378 45.455 0.00 0.00 0.00 3.46
2158 6925 7.634522 ACTTCAGTTTCTCATTTTTCTTCTCG 58.365 34.615 0.00 0.00 0.00 4.04
2207 7071 6.604396 TGATATCATTTCCACATCTTGTGCTT 59.396 34.615 0.00 0.00 46.51 3.91
2234 7098 4.981806 TTTAACATGCATTCACTAGGCC 57.018 40.909 0.00 0.00 0.00 5.19
2332 7197 6.909550 TTTATTACCTTTCACCTGTTGCAT 57.090 33.333 0.00 0.00 0.00 3.96
2351 7216 7.488150 TGTTGCATTTTCGTGTTTTTATGTGTA 59.512 29.630 0.00 0.00 0.00 2.90
2681 7733 2.168503 GTGACACACGACAACGCCA 61.169 57.895 0.00 0.00 43.96 5.69
2690 7742 2.671619 ACAACGCCAACCGGATGG 60.672 61.111 25.72 25.72 43.70 3.51
2803 7855 4.925646 TGTGATTCTCTTCTGACGAATGTG 59.074 41.667 0.00 0.00 0.00 3.21
2887 7940 5.585047 ACGCAAGATAATTAGTGAACTTCCC 59.415 40.000 0.00 0.00 43.62 3.97
3027 8083 3.204306 TCATGAATGCAGGTCCATCTC 57.796 47.619 0.00 0.00 0.00 2.75
3190 8247 3.036633 CACAAGATCTTCGACGTATCCG 58.963 50.000 4.57 0.00 40.83 4.18
3209 8266 3.135167 TCCGTAACTTTTTGTCTGGGTCT 59.865 43.478 0.00 0.00 0.00 3.85
3221 8278 8.934023 TTTTGTCTGGGTCTTATGAATTAAGT 57.066 30.769 0.00 0.00 38.76 2.24
3384 8441 6.013812 AGTTCTGCTTCCTAGATTTCTTCTGT 60.014 38.462 0.00 0.00 35.79 3.41
3436 8493 7.589221 GTCATCTTTGTTCTGCTTTAGTTTCTG 59.411 37.037 0.00 0.00 0.00 3.02
3676 8735 8.696043 AATACATCTAGGATTGCTTTAATGCA 57.304 30.769 11.69 11.69 39.36 3.96
3691 8753 7.441760 TGCTTTAATGCACACTTCATTTGATTT 59.558 29.630 11.69 0.00 38.12 2.17
3978 9048 4.511826 ACAGCGAAGAACCTGTCTAAAAAG 59.488 41.667 0.00 0.00 37.77 2.27
4035 9107 9.516314 TGACTCAAGTTTTATGAGATATACGTG 57.484 33.333 10.27 0.00 45.74 4.49
4155 9227 6.551385 ACTAAAATGAGTTGAGAGTTGCTG 57.449 37.500 0.00 0.00 0.00 4.41
4281 9353 5.779806 ACATAATACGTGCAACTTCACTC 57.220 39.130 0.00 0.00 34.92 3.51
4468 9549 9.445878 AGCAGATACATAATGAGGTTGAATATG 57.554 33.333 0.00 0.00 0.00 1.78
4481 9562 9.817809 TGAGGTTGAATATGTTGTACTTCTATC 57.182 33.333 0.00 0.00 0.00 2.08
4716 9798 2.787473 ACTCATCATTCCGCTTCCAA 57.213 45.000 0.00 0.00 0.00 3.53
4723 9805 5.185635 TCATCATTCCGCTTCCAATTTTTCT 59.814 36.000 0.00 0.00 0.00 2.52
5041 10178 7.559590 AAACTCTATTTCAGTGATGGTATGC 57.440 36.000 0.00 0.00 0.00 3.14
5042 10179 5.292765 ACTCTATTTCAGTGATGGTATGCG 58.707 41.667 0.00 0.00 0.00 4.73
5043 10180 4.631131 TCTATTTCAGTGATGGTATGCGG 58.369 43.478 0.00 0.00 0.00 5.69
5044 10181 2.779755 TTTCAGTGATGGTATGCGGT 57.220 45.000 0.00 0.00 0.00 5.68
5045 10182 2.022764 TTCAGTGATGGTATGCGGTG 57.977 50.000 0.00 0.00 0.00 4.94
5091 10233 1.001974 CCAGTTTGGTGAGGTGATCGA 59.998 52.381 0.00 0.00 31.35 3.59
5208 10354 5.643379 TTTCATGGTGTTTATTCTCAGCC 57.357 39.130 0.00 0.00 0.00 4.85
5224 10370 0.683973 AGCCTGATCTAATCGCCTGG 59.316 55.000 0.00 0.00 0.00 4.45
5290 10436 2.139118 GGCGTGGAGATCTTTATCAGC 58.861 52.381 0.00 0.00 34.28 4.26
5327 10473 0.606604 TCGGGTTCCAAGTAGACTGC 59.393 55.000 0.00 0.00 0.00 4.40
5453 10606 0.892755 ATTTGCACTCCTGGCACATG 59.107 50.000 0.00 0.00 41.75 3.21
5557 10714 3.733727 CGGGAACAAAAATCGAAAACTGG 59.266 43.478 0.00 0.00 0.00 4.00
5558 10715 4.055360 GGGAACAAAAATCGAAAACTGGG 58.945 43.478 0.00 0.00 0.00 4.45
5559 10716 4.442332 GGGAACAAAAATCGAAAACTGGGT 60.442 41.667 0.00 0.00 0.00 4.51
5561 10718 6.274579 GGAACAAAAATCGAAAACTGGGTTA 58.725 36.000 0.00 0.00 0.00 2.85
5562 10719 6.199531 GGAACAAAAATCGAAAACTGGGTTAC 59.800 38.462 0.00 0.00 0.00 2.50
5563 10720 6.459670 ACAAAAATCGAAAACTGGGTTACT 57.540 33.333 0.00 0.00 0.00 2.24
5612 10958 4.199310 CAGGGTTACATTACATGAGTGGG 58.801 47.826 0.00 0.00 0.00 4.61
5631 10977 2.162681 GGGTGAGTTGAAGAACATGGG 58.837 52.381 0.00 0.00 34.17 4.00
5665 11028 1.201414 GTACCCCATGTTTTCGGCTTG 59.799 52.381 0.00 0.00 0.00 4.01
5666 11029 1.079888 CCCCATGTTTTCGGCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
5772 11141 2.452491 AAGGAGGTGCCCCCTGTT 60.452 61.111 0.00 0.00 46.51 3.16
5828 11197 0.458025 GGCTTCTGAAGACGGTACCG 60.458 60.000 32.22 32.22 46.03 4.02
5962 13449 4.776322 CGCCCATCACGCCTTCCA 62.776 66.667 0.00 0.00 0.00 3.53
5964 13451 1.754234 GCCCATCACGCCTTCCATT 60.754 57.895 0.00 0.00 0.00 3.16
5965 13452 0.465460 GCCCATCACGCCTTCCATTA 60.465 55.000 0.00 0.00 0.00 1.90
5970 13457 4.216257 CCCATCACGCCTTCCATTAATTAG 59.784 45.833 0.00 0.00 0.00 1.73
5971 13458 5.063204 CCATCACGCCTTCCATTAATTAGA 58.937 41.667 0.00 0.00 0.00 2.10
5972 13459 5.530915 CCATCACGCCTTCCATTAATTAGAA 59.469 40.000 0.00 0.00 0.00 2.10
5975 13462 7.639113 TCACGCCTTCCATTAATTAGAAAAT 57.361 32.000 0.00 0.00 0.00 1.82
6014 13546 6.391227 TTCAACTTTCAAATCCACTTCTCC 57.609 37.500 0.00 0.00 0.00 3.71
6015 13547 5.445069 TCAACTTTCAAATCCACTTCTCCA 58.555 37.500 0.00 0.00 0.00 3.86
6016 13548 5.890985 TCAACTTTCAAATCCACTTCTCCAA 59.109 36.000 0.00 0.00 0.00 3.53
6017 13549 6.550854 TCAACTTTCAAATCCACTTCTCCAAT 59.449 34.615 0.00 0.00 0.00 3.16
6018 13550 6.336842 ACTTTCAAATCCACTTCTCCAATG 57.663 37.500 0.00 0.00 0.00 2.82
6019 13551 4.789012 TTCAAATCCACTTCTCCAATGC 57.211 40.909 0.00 0.00 0.00 3.56
6020 13552 3.091545 TCAAATCCACTTCTCCAATGCC 58.908 45.455 0.00 0.00 0.00 4.40
6021 13553 2.827322 CAAATCCACTTCTCCAATGCCA 59.173 45.455 0.00 0.00 0.00 4.92
6022 13554 3.393426 AATCCACTTCTCCAATGCCAT 57.607 42.857 0.00 0.00 0.00 4.40
6023 13555 2.425143 TCCACTTCTCCAATGCCATC 57.575 50.000 0.00 0.00 0.00 3.51
6024 13556 1.019673 CCACTTCTCCAATGCCATCG 58.980 55.000 0.00 0.00 0.00 3.84
6025 13557 0.379669 CACTTCTCCAATGCCATCGC 59.620 55.000 0.00 0.00 0.00 4.58
6026 13558 0.254178 ACTTCTCCAATGCCATCGCT 59.746 50.000 0.00 0.00 35.36 4.93
6027 13559 1.486310 ACTTCTCCAATGCCATCGCTA 59.514 47.619 0.00 0.00 35.36 4.26
6028 13560 1.869767 CTTCTCCAATGCCATCGCTAC 59.130 52.381 0.00 0.00 35.36 3.58
6029 13561 1.123077 TCTCCAATGCCATCGCTACT 58.877 50.000 0.00 0.00 35.36 2.57
6030 13562 1.202568 TCTCCAATGCCATCGCTACTG 60.203 52.381 0.00 0.00 35.36 2.74
6031 13563 0.815213 TCCAATGCCATCGCTACTGC 60.815 55.000 0.00 0.00 35.36 4.40
6032 13564 0.816825 CCAATGCCATCGCTACTGCT 60.817 55.000 0.00 0.00 36.97 4.24
6041 13583 2.513435 GCTACTGCTCCTGCTGCC 60.513 66.667 0.00 0.00 41.07 4.85
6042 13584 2.984623 CTACTGCTCCTGCTGCCA 59.015 61.111 0.00 0.00 41.07 4.92
6069 13611 3.711425 CGTCGATCGAAGAAAAAGTGTG 58.289 45.455 24.15 0.00 43.58 3.82
6070 13612 3.421826 CGTCGATCGAAGAAAAAGTGTGG 60.422 47.826 24.15 0.00 43.58 4.17
6071 13613 2.478894 TCGATCGAAGAAAAAGTGTGGC 59.521 45.455 16.99 0.00 43.58 5.01
6072 13614 2.412847 CGATCGAAGAAAAAGTGTGGCC 60.413 50.000 10.26 0.00 43.58 5.36
6073 13615 2.045561 TCGAAGAAAAAGTGTGGCCA 57.954 45.000 0.00 0.00 0.00 5.36
6074 13616 1.946768 TCGAAGAAAAAGTGTGGCCAG 59.053 47.619 5.11 0.00 0.00 4.85
6075 13617 1.600413 CGAAGAAAAAGTGTGGCCAGC 60.600 52.381 5.11 1.39 0.00 4.85
6076 13618 0.752658 AAGAAAAAGTGTGGCCAGCC 59.247 50.000 5.11 0.38 0.00 4.85
6077 13619 1.007387 GAAAAAGTGTGGCCAGCCG 60.007 57.895 5.11 0.00 39.42 5.52
6078 13620 2.420466 GAAAAAGTGTGGCCAGCCGG 62.420 60.000 5.11 0.00 39.42 6.13
6100 13642 0.720027 GATGAGATCGATGCATGGCG 59.280 55.000 2.46 1.89 0.00 5.69
6134 13676 2.899044 GAGACGATCGAGCTCCCCG 61.899 68.421 24.34 11.46 0.00 5.73
6141 13683 3.933722 CGAGCTCCCCGGATGCAT 61.934 66.667 8.47 0.00 0.00 3.96
6178 13720 1.302832 CCACCACTGGTCCTGCTTC 60.303 63.158 0.00 0.00 31.02 3.86
6189 13731 4.093952 CTGCTTCGTGCTTGCGGG 62.094 66.667 5.00 0.00 43.37 6.13
6199 13741 0.604243 TGCTTGCGGGTGTTAATCGT 60.604 50.000 0.00 0.00 0.00 3.73
6202 13744 1.127951 CTTGCGGGTGTTAATCGTGTC 59.872 52.381 0.00 0.00 0.00 3.67
6203 13745 1.009903 TGCGGGTGTTAATCGTGTCG 61.010 55.000 0.00 0.00 0.00 4.35
6205 13747 1.732077 GCGGGTGTTAATCGTGTCGTA 60.732 52.381 0.00 0.00 0.00 3.43
6206 13748 2.179589 CGGGTGTTAATCGTGTCGTAG 58.820 52.381 0.00 0.00 0.00 3.51
6207 13749 2.159531 CGGGTGTTAATCGTGTCGTAGA 60.160 50.000 0.00 0.00 0.00 2.59
6208 13750 3.670359 CGGGTGTTAATCGTGTCGTAGAA 60.670 47.826 0.00 0.00 39.69 2.10
6209 13751 3.609807 GGGTGTTAATCGTGTCGTAGAAC 59.390 47.826 0.00 0.00 39.69 3.01
6210 13752 3.609807 GGTGTTAATCGTGTCGTAGAACC 59.390 47.826 0.00 0.00 39.69 3.62
6211 13753 4.229096 GTGTTAATCGTGTCGTAGAACCA 58.771 43.478 0.00 0.00 39.69 3.67
6212 13754 4.322804 GTGTTAATCGTGTCGTAGAACCAG 59.677 45.833 0.00 0.00 39.69 4.00
6213 13755 4.022935 TGTTAATCGTGTCGTAGAACCAGT 60.023 41.667 0.00 0.00 39.69 4.00
6214 13756 3.655276 AATCGTGTCGTAGAACCAGTT 57.345 42.857 0.00 0.00 39.69 3.16
6215 13757 4.771590 AATCGTGTCGTAGAACCAGTTA 57.228 40.909 0.00 0.00 39.69 2.24
6216 13758 3.818961 TCGTGTCGTAGAACCAGTTAG 57.181 47.619 0.00 0.00 39.69 2.34
6217 13759 3.141398 TCGTGTCGTAGAACCAGTTAGT 58.859 45.455 0.00 0.00 39.69 2.24
6218 13760 4.314961 TCGTGTCGTAGAACCAGTTAGTA 58.685 43.478 0.00 0.00 39.69 1.82
6239 13781 4.058721 ACTGAATTTTGGTGGTTTCAGC 57.941 40.909 10.53 0.00 45.66 4.26
6264 13806 2.652382 TTCTCGTTTGAGCCACGGCA 62.652 55.000 11.35 0.00 44.88 5.69
6280 13823 3.376078 CAATGCAAGCCCAGCCGT 61.376 61.111 0.00 0.00 0.00 5.68
6283 13826 0.684153 AATGCAAGCCCAGCCGTAAT 60.684 50.000 0.00 0.00 0.00 1.89
6313 13856 0.826715 ACTATCACCATCGCACAGCT 59.173 50.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.355115 GCCCTACCCACCCTTGTG 59.645 66.667 0.00 0.00 42.39 3.33
18 19 3.327404 CGCCCTACCCACCCTTGT 61.327 66.667 0.00 0.00 0.00 3.16
19 20 4.796495 GCGCCCTACCCACCCTTG 62.796 72.222 0.00 0.00 0.00 3.61
35 36 4.785453 CCACAAGGAGGAGGGCGC 62.785 72.222 0.00 0.00 36.89 6.53
36 37 4.785453 GCCACAAGGAGGAGGGCG 62.785 72.222 0.00 0.00 36.89 6.13
37 38 4.432741 GGCCACAAGGAGGAGGGC 62.433 72.222 0.00 0.00 43.86 5.19
38 39 2.935481 TGGCCACAAGGAGGAGGG 60.935 66.667 0.00 0.00 36.89 4.30
39 40 2.352805 GTGGCCACAAGGAGGAGG 59.647 66.667 31.23 0.00 36.89 4.30
40 41 2.190488 GAGGTGGCCACAAGGAGGAG 62.190 65.000 35.78 0.00 36.89 3.69
41 42 2.121963 AGGTGGCCACAAGGAGGA 60.122 61.111 35.78 0.00 36.89 3.71
42 43 2.352805 GAGGTGGCCACAAGGAGG 59.647 66.667 35.78 0.00 36.89 4.30
43 44 2.046892 CGAGGTGGCCACAAGGAG 60.047 66.667 35.78 18.20 36.89 3.69
44 45 2.847234 ACGAGGTGGCCACAAGGA 60.847 61.111 35.78 0.00 36.89 3.36
45 46 2.669569 CACGAGGTGGCCACAAGG 60.670 66.667 35.78 24.67 38.23 3.61
54 55 2.125912 CGGAAGAGCCACGAGGTG 60.126 66.667 0.00 0.00 37.19 4.00
55 56 2.282958 TCGGAAGAGCCACGAGGT 60.283 61.111 0.00 0.00 35.94 3.85
56 57 1.878656 AAGTCGGAAGAGCCACGAGG 61.879 60.000 0.00 0.00 43.49 4.63
57 58 0.734253 CAAGTCGGAAGAGCCACGAG 60.734 60.000 0.00 0.00 43.49 4.18
58 59 1.176619 TCAAGTCGGAAGAGCCACGA 61.177 55.000 0.00 0.00 43.49 4.35
59 60 0.108615 ATCAAGTCGGAAGAGCCACG 60.109 55.000 0.00 0.00 43.49 4.94
60 61 1.205893 AGATCAAGTCGGAAGAGCCAC 59.794 52.381 0.00 0.00 43.49 5.01
61 62 1.561643 AGATCAAGTCGGAAGAGCCA 58.438 50.000 0.00 0.00 43.49 4.75
62 63 2.093973 TGAAGATCAAGTCGGAAGAGCC 60.094 50.000 0.00 0.00 43.49 4.70
63 64 3.238108 TGAAGATCAAGTCGGAAGAGC 57.762 47.619 0.00 0.00 43.49 4.09
74 75 3.008375 CACCCCAGAGACTTGAAGATCAA 59.992 47.826 0.00 0.00 34.79 2.57
75 76 2.568956 CACCCCAGAGACTTGAAGATCA 59.431 50.000 0.00 0.00 0.00 2.92
76 77 2.569404 ACACCCCAGAGACTTGAAGATC 59.431 50.000 0.00 0.00 0.00 2.75
77 78 2.569404 GACACCCCAGAGACTTGAAGAT 59.431 50.000 0.00 0.00 0.00 2.40
78 79 1.971357 GACACCCCAGAGACTTGAAGA 59.029 52.381 0.00 0.00 0.00 2.87
79 80 1.974236 AGACACCCCAGAGACTTGAAG 59.026 52.381 0.00 0.00 0.00 3.02
80 81 2.103153 AGACACCCCAGAGACTTGAA 57.897 50.000 0.00 0.00 0.00 2.69
81 82 1.971357 GAAGACACCCCAGAGACTTGA 59.029 52.381 0.00 0.00 0.00 3.02
82 83 1.974236 AGAAGACACCCCAGAGACTTG 59.026 52.381 0.00 0.00 0.00 3.16
83 84 1.974236 CAGAAGACACCCCAGAGACTT 59.026 52.381 0.00 0.00 0.00 3.01
84 85 1.638529 CAGAAGACACCCCAGAGACT 58.361 55.000 0.00 0.00 0.00 3.24
85 86 0.610687 CCAGAAGACACCCCAGAGAC 59.389 60.000 0.00 0.00 0.00 3.36
86 87 0.191064 ACCAGAAGACACCCCAGAGA 59.809 55.000 0.00 0.00 0.00 3.10
87 88 0.610687 GACCAGAAGACACCCCAGAG 59.389 60.000 0.00 0.00 0.00 3.35
88 89 0.836400 GGACCAGAAGACACCCCAGA 60.836 60.000 0.00 0.00 0.00 3.86
89 90 1.127567 TGGACCAGAAGACACCCCAG 61.128 60.000 0.00 0.00 0.00 4.45
90 91 0.696143 TTGGACCAGAAGACACCCCA 60.696 55.000 0.00 0.00 0.00 4.96
91 92 0.476771 TTTGGACCAGAAGACACCCC 59.523 55.000 0.00 0.00 0.00 4.95
92 93 2.358322 TTTTGGACCAGAAGACACCC 57.642 50.000 0.00 0.00 0.00 4.61
111 112 4.497473 TGAAACCTTCGCGATGATTTTT 57.503 36.364 22.25 16.62 0.00 1.94
112 113 4.701956 ATGAAACCTTCGCGATGATTTT 57.298 36.364 22.25 18.75 0.00 1.82
113 114 4.701956 AATGAAACCTTCGCGATGATTT 57.298 36.364 22.25 18.05 0.00 2.17
114 115 4.662145 GAAATGAAACCTTCGCGATGATT 58.338 39.130 22.25 15.98 0.00 2.57
115 116 3.242413 CGAAATGAAACCTTCGCGATGAT 60.242 43.478 22.25 2.80 38.13 2.45
116 117 2.093625 CGAAATGAAACCTTCGCGATGA 59.906 45.455 22.25 1.48 38.13 2.92
117 118 2.159707 ACGAAATGAAACCTTCGCGATG 60.160 45.455 10.88 13.11 46.46 3.84
118 119 2.073816 ACGAAATGAAACCTTCGCGAT 58.926 42.857 10.88 0.00 46.46 4.58
119 120 1.504359 ACGAAATGAAACCTTCGCGA 58.496 45.000 3.71 3.71 46.46 5.87
120 121 2.309898 AACGAAATGAAACCTTCGCG 57.690 45.000 0.00 0.00 46.46 5.87
121 122 2.724174 CCAAACGAAATGAAACCTTCGC 59.276 45.455 4.26 0.00 46.46 4.70
123 124 5.183014 AGTCCAAACGAAATGAAACCTTC 57.817 39.130 0.00 0.00 0.00 3.46
124 125 4.037565 GGAGTCCAAACGAAATGAAACCTT 59.962 41.667 3.60 0.00 0.00 3.50
125 126 3.568430 GGAGTCCAAACGAAATGAAACCT 59.432 43.478 3.60 0.00 0.00 3.50
126 127 3.608474 CGGAGTCCAAACGAAATGAAACC 60.608 47.826 10.49 0.00 0.00 3.27
127 128 3.002965 ACGGAGTCCAAACGAAATGAAAC 59.997 43.478 10.49 0.00 29.74 2.78
128 129 3.207778 ACGGAGTCCAAACGAAATGAAA 58.792 40.909 10.49 0.00 29.74 2.69
129 130 2.841215 ACGGAGTCCAAACGAAATGAA 58.159 42.857 10.49 0.00 29.74 2.57
130 131 2.536761 ACGGAGTCCAAACGAAATGA 57.463 45.000 10.49 0.00 29.74 2.57
131 132 3.296628 CAAACGGAGTCCAAACGAAATG 58.703 45.455 10.49 0.00 45.00 2.32
132 133 2.292292 CCAAACGGAGTCCAAACGAAAT 59.708 45.455 10.49 0.00 45.00 2.17
133 134 1.671845 CCAAACGGAGTCCAAACGAAA 59.328 47.619 10.49 0.00 45.00 3.46
134 135 1.301423 CCAAACGGAGTCCAAACGAA 58.699 50.000 10.49 0.00 45.00 3.85
135 136 0.178533 ACCAAACGGAGTCCAAACGA 59.821 50.000 10.49 0.00 45.00 3.85
136 137 1.868469 TACCAAACGGAGTCCAAACG 58.132 50.000 10.49 0.00 45.00 3.60
137 138 3.189910 GGAATACCAAACGGAGTCCAAAC 59.810 47.826 10.49 0.00 36.19 2.93
138 139 3.073356 AGGAATACCAAACGGAGTCCAAA 59.927 43.478 10.49 0.00 38.33 3.28
139 140 2.640826 AGGAATACCAAACGGAGTCCAA 59.359 45.455 10.49 0.00 38.33 3.53
140 141 2.262637 AGGAATACCAAACGGAGTCCA 58.737 47.619 10.49 0.00 38.33 4.02
141 142 3.345508 AAGGAATACCAAACGGAGTCC 57.654 47.619 0.00 0.00 38.33 3.85
142 143 5.001874 AGAAAAGGAATACCAAACGGAGTC 58.998 41.667 0.00 0.00 38.33 3.36
143 144 4.760204 CAGAAAAGGAATACCAAACGGAGT 59.240 41.667 0.00 0.00 40.63 3.85
144 145 4.379499 GCAGAAAAGGAATACCAAACGGAG 60.379 45.833 0.00 0.00 38.94 4.63
145 146 3.504520 GCAGAAAAGGAATACCAAACGGA 59.495 43.478 0.00 0.00 38.94 4.69
146 147 3.669557 CGCAGAAAAGGAATACCAAACGG 60.670 47.826 0.00 0.00 38.94 4.44
147 148 3.187637 TCGCAGAAAAGGAATACCAAACG 59.812 43.478 0.00 0.00 38.94 3.60
148 149 4.759516 TCGCAGAAAAGGAATACCAAAC 57.240 40.909 0.00 0.00 38.94 2.93
149 150 5.300792 AGTTTCGCAGAAAAGGAATACCAAA 59.699 36.000 5.51 0.00 45.90 3.28
150 151 4.825085 AGTTTCGCAGAAAAGGAATACCAA 59.175 37.500 5.51 0.00 45.90 3.67
151 152 4.394729 AGTTTCGCAGAAAAGGAATACCA 58.605 39.130 5.51 0.00 45.90 3.25
152 153 4.454504 TGAGTTTCGCAGAAAAGGAATACC 59.545 41.667 5.51 0.00 45.90 2.73
153 154 5.607119 TGAGTTTCGCAGAAAAGGAATAC 57.393 39.130 5.51 0.00 45.90 1.89
154 155 6.627395 TTTGAGTTTCGCAGAAAAGGAATA 57.373 33.333 5.51 0.00 45.90 1.75
155 156 5.514274 TTTGAGTTTCGCAGAAAAGGAAT 57.486 34.783 5.51 0.00 45.90 3.01
156 157 4.974368 TTTGAGTTTCGCAGAAAAGGAA 57.026 36.364 5.51 0.00 45.90 3.36
157 158 4.974368 TTTTGAGTTTCGCAGAAAAGGA 57.026 36.364 5.51 0.00 45.90 3.36
158 159 4.862018 TGTTTTTGAGTTTCGCAGAAAAGG 59.138 37.500 5.51 0.00 45.90 3.11
159 160 6.388259 TTGTTTTTGAGTTTCGCAGAAAAG 57.612 33.333 5.51 0.00 45.90 2.27
160 161 5.347364 CCTTGTTTTTGAGTTTCGCAGAAAA 59.653 36.000 5.51 0.00 45.90 2.29
161 162 4.862018 CCTTGTTTTTGAGTTTCGCAGAAA 59.138 37.500 0.55 0.55 45.90 2.52
162 163 4.156922 TCCTTGTTTTTGAGTTTCGCAGAA 59.843 37.500 0.00 0.00 45.90 3.02
163 164 3.692101 TCCTTGTTTTTGAGTTTCGCAGA 59.308 39.130 0.00 0.00 0.00 4.26
164 165 4.027572 TCCTTGTTTTTGAGTTTCGCAG 57.972 40.909 0.00 0.00 0.00 5.18
165 166 4.442375 TTCCTTGTTTTTGAGTTTCGCA 57.558 36.364 0.00 0.00 0.00 5.10
166 167 5.771602 TTTTCCTTGTTTTTGAGTTTCGC 57.228 34.783 0.00 0.00 0.00 4.70
186 187 2.168313 CCCAGTGCCAGTTTCTGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
187 188 1.756538 CCCAGTGCCAGTTTCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
188 189 1.402787 CCCAGTGCCAGTTTCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
189 190 1.109323 GCCCAGTGCCAGTTTCTGTT 61.109 55.000 0.00 0.00 0.00 3.16
190 191 1.529244 GCCCAGTGCCAGTTTCTGT 60.529 57.895 0.00 0.00 0.00 3.41
191 192 3.359002 GCCCAGTGCCAGTTTCTG 58.641 61.111 0.00 0.00 0.00 3.02
200 201 3.181443 ACATATTAACCTAGGCCCAGTGC 60.181 47.826 9.30 0.00 40.16 4.40
201 202 4.706842 ACATATTAACCTAGGCCCAGTG 57.293 45.455 9.30 3.95 0.00 3.66
202 203 5.909417 ACTAACATATTAACCTAGGCCCAGT 59.091 40.000 9.30 0.00 0.00 4.00
203 204 6.435292 ACTAACATATTAACCTAGGCCCAG 57.565 41.667 9.30 0.00 0.00 4.45
204 205 5.308759 GGACTAACATATTAACCTAGGCCCA 59.691 44.000 9.30 0.00 32.38 5.36
205 206 5.802465 GGACTAACATATTAACCTAGGCCC 58.198 45.833 9.30 0.00 32.38 5.80
206 207 5.280368 GGGGACTAACATATTAACCTAGGCC 60.280 48.000 9.30 0.00 37.09 5.19
207 208 5.308759 TGGGGACTAACATATTAACCTAGGC 59.691 44.000 9.30 0.00 0.00 3.93
208 209 7.383156 TTGGGGACTAACATATTAACCTAGG 57.617 40.000 7.41 7.41 0.00 3.02
209 210 9.689501 TTTTTGGGGACTAACATATTAACCTAG 57.310 33.333 0.00 0.00 0.00 3.02
308 309 9.292195 TCTGATACGTCTCCAACATATGTATAA 57.708 33.333 9.21 0.00 0.00 0.98
309 310 8.727910 GTCTGATACGTCTCCAACATATGTATA 58.272 37.037 9.21 0.00 0.00 1.47
310 311 7.573283 CGTCTGATACGTCTCCAACATATGTAT 60.573 40.741 9.21 0.00 46.72 2.29
311 312 6.293244 CGTCTGATACGTCTCCAACATATGTA 60.293 42.308 9.21 0.00 46.72 2.29
312 313 5.505819 CGTCTGATACGTCTCCAACATATGT 60.506 44.000 1.41 1.41 46.72 2.29
313 314 4.912187 CGTCTGATACGTCTCCAACATATG 59.088 45.833 0.00 0.00 46.72 1.78
314 315 5.109662 CGTCTGATACGTCTCCAACATAT 57.890 43.478 0.00 0.00 46.72 1.78
315 316 4.547406 CGTCTGATACGTCTCCAACATA 57.453 45.455 0.00 0.00 46.72 2.29
316 317 3.422417 CGTCTGATACGTCTCCAACAT 57.578 47.619 0.00 0.00 46.72 2.71
317 318 2.913777 CGTCTGATACGTCTCCAACA 57.086 50.000 0.00 0.00 46.72 3.33
327 328 3.335786 TCTTTAGCTCGCGTCTGATAC 57.664 47.619 5.77 0.00 0.00 2.24
328 329 4.036380 TCATTCTTTAGCTCGCGTCTGATA 59.964 41.667 5.77 0.00 0.00 2.15
329 330 2.941453 TTCTTTAGCTCGCGTCTGAT 57.059 45.000 5.77 0.00 0.00 2.90
330 331 2.163613 TCATTCTTTAGCTCGCGTCTGA 59.836 45.455 5.77 0.00 0.00 3.27
331 332 2.530177 TCATTCTTTAGCTCGCGTCTG 58.470 47.619 5.77 0.00 0.00 3.51
332 333 2.423892 TCTCATTCTTTAGCTCGCGTCT 59.576 45.455 5.77 7.47 0.00 4.18
333 334 2.798680 TCTCATTCTTTAGCTCGCGTC 58.201 47.619 5.77 0.00 0.00 5.19
334 335 2.941453 TCTCATTCTTTAGCTCGCGT 57.059 45.000 5.77 0.00 0.00 6.01
338 339 7.602265 AGTCTTTGTCTTCTCATTCTTTAGCTC 59.398 37.037 0.00 0.00 0.00 4.09
349 350 1.768275 TGGCCAGTCTTTGTCTTCTCA 59.232 47.619 0.00 0.00 0.00 3.27
369 370 8.627208 ATTGTTCATTGTTCTACATCTTCACT 57.373 30.769 0.00 0.00 0.00 3.41
371 372 8.229811 CGAATTGTTCATTGTTCTACATCTTCA 58.770 33.333 0.00 0.00 0.00 3.02
412 413 1.243902 GAGGTGGCGATTTGTGGAAA 58.756 50.000 0.00 0.00 0.00 3.13
435 437 2.026262 GCTCCCCTTTATGGAAGTGTCA 60.026 50.000 0.00 0.00 38.35 3.58
447 449 3.948719 TTGGCGTCGCTCCCCTTT 61.949 61.111 18.11 0.00 0.00 3.11
490 492 1.813178 GCTTTAGGTGAAAGTCCTGGC 59.187 52.381 0.00 0.00 45.56 4.85
520 522 1.141881 CCTCCCACGTTCCTCATCG 59.858 63.158 0.00 0.00 0.00 3.84
674 2736 0.109873 GTCCGATTCGACTGTGACGT 60.110 55.000 7.83 0.00 0.00 4.34
821 3390 2.687425 TCTTGCTTGCTTTGCTTGTGTA 59.313 40.909 0.00 0.00 0.00 2.90
822 3391 1.477700 TCTTGCTTGCTTTGCTTGTGT 59.522 42.857 0.00 0.00 0.00 3.72
824 3393 1.477700 TGTCTTGCTTGCTTTGCTTGT 59.522 42.857 0.00 0.00 0.00 3.16
825 3394 2.212869 TGTCTTGCTTGCTTTGCTTG 57.787 45.000 0.00 0.00 0.00 4.01
856 3425 2.203153 ACGGTTGACTGTGGTGGC 60.203 61.111 0.00 0.00 33.47 5.01
895 5312 4.802051 GATGGGCTTCGGCTGGCA 62.802 66.667 1.08 0.00 41.44 4.92
906 5323 3.849951 TCTTCCGAGCGGATGGGC 61.850 66.667 20.25 0.00 44.74 5.36
918 5335 1.379146 GAGGGTGGTTGGGTCTTCC 59.621 63.158 0.00 0.00 0.00 3.46
935 5352 4.124351 GTGACGCCGACCGGATGA 62.124 66.667 9.46 0.00 42.52 2.92
988 5405 2.123854 TCTCATCGGGGAGACGGG 60.124 66.667 3.28 0.00 38.95 5.28
989 5406 2.851071 GCTCTCATCGGGGAGACGG 61.851 68.421 3.28 0.00 38.95 4.79
990 5407 2.725008 GCTCTCATCGGGGAGACG 59.275 66.667 3.28 0.00 38.95 4.18
991 5408 2.851071 CGGCTCTCATCGGGGAGAC 61.851 68.421 3.28 0.00 38.95 3.36
992 5409 2.519541 CGGCTCTCATCGGGGAGA 60.520 66.667 6.74 6.74 41.47 3.71
993 5410 4.292178 GCGGCTCTCATCGGGGAG 62.292 72.222 0.00 0.00 36.21 4.30
1011 5428 1.001641 GAAGGCTGTGGATGTGGCT 60.002 57.895 0.00 0.00 38.25 4.75
1227 5644 0.457851 CCCGAAACAAAACCACAGCA 59.542 50.000 0.00 0.00 0.00 4.41
1231 5648 0.029700 CCGACCCGAAACAAAACCAC 59.970 55.000 0.00 0.00 0.00 4.16
1315 5732 4.980805 GCCTTGTCCGCCGTCACA 62.981 66.667 0.00 0.00 0.00 3.58
1436 5853 0.108424 CTGGTACTGACAGAGCTGGC 60.108 60.000 10.08 0.00 38.20 4.85
1594 6020 1.421268 TCACCAGTCAGTCAAGGCAAT 59.579 47.619 0.00 0.00 0.00 3.56
1597 6023 1.808945 CAATCACCAGTCAGTCAAGGC 59.191 52.381 0.00 0.00 0.00 4.35
1656 6082 4.533707 TGATTCAGTGATATGATCCTCCCC 59.466 45.833 0.00 0.00 0.00 4.81
1657 6083 5.752036 TGATTCAGTGATATGATCCTCCC 57.248 43.478 0.00 0.00 0.00 4.30
1658 6084 8.702819 TGATATGATTCAGTGATATGATCCTCC 58.297 37.037 0.00 0.00 0.00 4.30
1754 6180 5.591643 TTTACGAGATGCAGTTTTCACTC 57.408 39.130 0.00 0.00 0.00 3.51
1782 6212 4.127907 AGCACATCTCAATATCACAGCTG 58.872 43.478 13.48 13.48 0.00 4.24
1807 6505 8.407064 CCTGTATCCTAGTACAGTCTAACTTTG 58.593 40.741 15.62 0.00 46.44 2.77
2048 6814 4.152284 AGGTAAGTATTGGGCAAGCTAC 57.848 45.455 0.00 0.00 0.00 3.58
2158 6925 4.112634 GGTTCAAAAGTCAAAGCCTGTTC 58.887 43.478 0.00 0.00 0.00 3.18
2207 7071 7.469043 GCCTAGTGAATGCATGTTAAATCATGA 60.469 37.037 0.00 0.00 45.41 3.07
2332 7197 9.491675 TCTCCTATACACATAAAAACACGAAAA 57.508 29.630 0.00 0.00 0.00 2.29
2669 7721 4.007940 CCGGTTGGCGTTGTCGTG 62.008 66.667 0.00 0.00 39.49 4.35
2672 7724 2.686816 CCATCCGGTTGGCGTTGTC 61.687 63.158 18.49 0.00 34.14 3.18
2681 7733 3.992943 TCAAACATAGTCCATCCGGTT 57.007 42.857 0.00 0.00 0.00 4.44
2690 7742 8.474006 AAAACTGTGGTTTTTCAAACATAGTC 57.526 30.769 3.25 0.00 46.16 2.59
2803 7855 7.434897 TGTGACTTTGCAAGAACATTATGTTTC 59.565 33.333 12.13 5.85 41.28 2.78
2818 7870 2.355756 GTGCTTCTCTTGTGACTTTGCA 59.644 45.455 0.00 0.00 0.00 4.08
2913 7966 2.952978 ACAAAATGCCACGAGGTGTAAA 59.047 40.909 0.00 0.00 37.19 2.01
2918 7971 2.306847 AGAAACAAAATGCCACGAGGT 58.693 42.857 0.00 0.00 37.19 3.85
3000 8056 4.022068 TGGACCTGCATTCATGAAAAGTTC 60.022 41.667 13.09 8.41 0.00 3.01
3027 8083 8.284945 TCTTTCCTGGAATATCAATGTCAAAG 57.715 34.615 10.45 0.00 0.00 2.77
3190 8247 7.739498 TCATAAGACCCAGACAAAAAGTTAC 57.261 36.000 0.00 0.00 0.00 2.50
3345 8402 2.290641 GCAGAACTGAACGAACAATGGT 59.709 45.455 5.97 0.00 0.00 3.55
3346 8403 2.549754 AGCAGAACTGAACGAACAATGG 59.450 45.455 5.97 0.00 0.00 3.16
3384 8441 8.447833 CCGAATTCAACTAGCTACAACAAATTA 58.552 33.333 6.22 0.00 0.00 1.40
3436 8493 9.855021 ACAAAATAAATTAGTTGTGCTGTATCC 57.145 29.630 4.64 0.00 33.09 2.59
3483 8540 7.255242 CGGCCTACATCTGAAAATAATTGACAT 60.255 37.037 0.00 0.00 0.00 3.06
3492 8549 4.339247 CCAATTCGGCCTACATCTGAAAAT 59.661 41.667 0.00 0.00 33.11 1.82
3559 8616 2.687700 AGACCTCTTGCAGCATACAG 57.312 50.000 0.00 0.00 0.00 2.74
3676 8735 5.242393 AGCTGCTACAAATCAAATGAAGTGT 59.758 36.000 0.00 7.30 0.00 3.55
3712 8774 6.564709 ATGTGATCCATTATGCACATACAC 57.435 37.500 12.80 0.00 46.65 2.90
3780 8850 6.331837 ACCAGGCCCATAGTACAAGTAAATAT 59.668 38.462 0.00 0.00 0.00 1.28
3958 9028 3.188667 CCCTTTTTAGACAGGTTCTTCGC 59.811 47.826 0.00 0.00 35.55 4.70
3978 9048 6.293680 GCTAGCTGCATAGTTTTAAGATTCCC 60.294 42.308 7.70 0.00 42.31 3.97
3998 9068 5.557891 AAACTTGAGTCAATCATGCTAGC 57.442 39.130 8.10 8.10 37.89 3.42
4035 9107 6.978659 ACTTTAACTAGAAAGGCAAACAAAGC 59.021 34.615 0.00 0.00 40.17 3.51
4181 9253 1.221466 GCAACACGAGTACTGCAGCA 61.221 55.000 15.27 0.00 32.90 4.41
4222 9294 6.934048 AAATCTAGAGGTTGCAAGCTATTC 57.066 37.500 29.74 18.16 36.78 1.75
4530 9611 8.543774 ACTCCTAGAGAAATTTTGATAGAAGCA 58.456 33.333 0.00 0.00 33.32 3.91
4587 9668 6.291648 ACAGAAGCAGAGAAGATGTAATGA 57.708 37.500 0.00 0.00 0.00 2.57
4707 9788 4.870363 TGAAAGAGAAAAATTGGAAGCGG 58.130 39.130 0.00 0.00 0.00 5.52
5041 10178 1.206578 CCAACAGTTAAGCGCACCG 59.793 57.895 11.47 0.00 0.00 4.94
5042 10179 1.081442 GCCAACAGTTAAGCGCACC 60.081 57.895 11.47 0.00 0.00 5.01
5043 10180 0.240945 ATGCCAACAGTTAAGCGCAC 59.759 50.000 11.47 0.00 0.00 5.34
5044 10181 0.958091 AATGCCAACAGTTAAGCGCA 59.042 45.000 11.47 2.08 0.00 6.09
5045 10182 2.064573 AAATGCCAACAGTTAAGCGC 57.935 45.000 0.00 0.00 31.04 5.92
5091 10233 2.138320 CTTCGTCATGCTCAGTTGTGT 58.862 47.619 0.00 0.00 0.00 3.72
5181 10324 7.288810 TGAGAATAAACACCATGAAAAAGCT 57.711 32.000 0.00 0.00 0.00 3.74
5208 10354 0.394192 TGGCCAGGCGATTAGATCAG 59.606 55.000 0.00 0.00 0.00 2.90
5224 10370 2.802247 GCCTGAACAAAAAGATGTTGGC 59.198 45.455 5.97 5.97 43.31 4.52
5307 10453 1.672145 GCAGTCTACTTGGAACCCGAC 60.672 57.143 0.00 0.00 0.00 4.79
5327 10473 0.815615 GCCTACCCGAGCAATTCAGG 60.816 60.000 0.00 0.00 0.00 3.86
5453 10606 4.368315 GTTTTGTCCCCTTTTCACACATC 58.632 43.478 0.00 0.00 0.00 3.06
5612 10958 3.077359 CTCCCATGTTCTTCAACTCACC 58.923 50.000 0.00 0.00 33.17 4.02
5631 10977 0.179081 GGGTACATCTTCCGTGCCTC 60.179 60.000 0.00 0.00 38.97 4.70
5723 11092 3.694072 TCATTTATGCTTACCACAGTGCC 59.306 43.478 0.00 0.00 0.00 5.01
5858 11234 1.524355 CTGCTGTCTCAGTGTTTCACG 59.476 52.381 0.00 0.00 39.64 4.35
5859 11235 2.799412 CTCTGCTGTCTCAGTGTTTCAC 59.201 50.000 0.00 0.00 35.63 3.18
5986 13518 4.100963 AGTGGATTTGAAAGTTGAAACCCC 59.899 41.667 0.00 0.00 0.00 4.95
6024 13556 2.513435 GGCAGCAGGAGCAGTAGC 60.513 66.667 0.00 0.00 45.49 3.58
6025 13557 1.449246 GTGGCAGCAGGAGCAGTAG 60.449 63.158 0.00 0.00 45.49 2.57
6026 13558 2.176314 CTGTGGCAGCAGGAGCAGTA 62.176 60.000 8.60 0.00 45.49 2.74
6027 13559 3.548306 CTGTGGCAGCAGGAGCAGT 62.548 63.158 8.60 0.00 45.49 4.40
6028 13560 2.746671 CTGTGGCAGCAGGAGCAG 60.747 66.667 8.60 0.00 45.49 4.24
6041 13583 2.839438 CTTCGATCGACGCGCTGTG 61.839 63.158 19.26 0.00 42.26 3.66
6042 13584 2.523184 TTCTTCGATCGACGCGCTGT 62.523 55.000 19.26 5.01 42.26 4.40
6069 13611 2.049627 ATCTCATCTTCCGGCTGGCC 62.050 60.000 6.73 0.00 34.14 5.36
6070 13612 0.602372 GATCTCATCTTCCGGCTGGC 60.602 60.000 6.73 0.00 34.14 4.85
6071 13613 0.319383 CGATCTCATCTTCCGGCTGG 60.319 60.000 4.71 4.71 0.00 4.85
6072 13614 0.670706 TCGATCTCATCTTCCGGCTG 59.329 55.000 0.00 0.00 0.00 4.85
6073 13615 1.271934 CATCGATCTCATCTTCCGGCT 59.728 52.381 0.00 0.00 0.00 5.52
6074 13616 1.707632 CATCGATCTCATCTTCCGGC 58.292 55.000 0.00 0.00 0.00 6.13
6075 13617 1.000171 TGCATCGATCTCATCTTCCGG 60.000 52.381 0.00 0.00 0.00 5.14
6076 13618 2.428888 TGCATCGATCTCATCTTCCG 57.571 50.000 0.00 0.00 0.00 4.30
6077 13619 3.001414 CCATGCATCGATCTCATCTTCC 58.999 50.000 0.00 0.00 0.00 3.46
6078 13620 2.415857 GCCATGCATCGATCTCATCTTC 59.584 50.000 0.00 0.00 0.00 2.87
6134 13676 1.009829 GACGAACCACTGATGCATCC 58.990 55.000 23.67 6.71 0.00 3.51
6161 13703 1.669115 CGAAGCAGGACCAGTGGTG 60.669 63.158 22.50 6.73 35.25 4.17
6162 13704 2.140792 ACGAAGCAGGACCAGTGGT 61.141 57.895 16.70 16.70 39.44 4.16
6178 13720 0.179200 GATTAACACCCGCAAGCACG 60.179 55.000 0.00 0.00 0.00 5.34
6189 13731 4.229096 TGGTTCTACGACACGATTAACAC 58.771 43.478 0.00 0.00 0.00 3.32
6211 13753 7.558444 TGAAACCACCAAAATTCAGTACTAACT 59.442 33.333 0.00 0.00 35.91 2.24
6212 13754 7.708998 TGAAACCACCAAAATTCAGTACTAAC 58.291 34.615 0.00 0.00 0.00 2.34
6213 13755 7.469456 GCTGAAACCACCAAAATTCAGTACTAA 60.469 37.037 13.87 0.00 46.56 2.24
6214 13756 6.016610 GCTGAAACCACCAAAATTCAGTACTA 60.017 38.462 13.87 0.00 46.56 1.82
6215 13757 5.221244 GCTGAAACCACCAAAATTCAGTACT 60.221 40.000 13.87 0.00 46.56 2.73
6216 13758 4.982295 GCTGAAACCACCAAAATTCAGTAC 59.018 41.667 13.87 0.00 46.56 2.73
6217 13759 4.892934 AGCTGAAACCACCAAAATTCAGTA 59.107 37.500 13.87 0.00 46.56 2.74
6218 13760 3.706086 AGCTGAAACCACCAAAATTCAGT 59.294 39.130 13.87 1.60 46.56 3.41
6239 13781 2.158449 GTGGCTCAAACGAGAATCACAG 59.842 50.000 0.00 0.00 32.56 3.66
6264 13806 0.684153 ATTACGGCTGGGCTTGCATT 60.684 50.000 0.00 0.00 0.00 3.56
6280 13823 5.498393 TGGTGATAGTTTTGGGCGTTATTA 58.502 37.500 0.00 0.00 0.00 0.98
6283 13826 3.420300 TGGTGATAGTTTTGGGCGTTA 57.580 42.857 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.