Multiple sequence alignment - TraesCS4B01G291800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G291800 chr4B 100.000 2594 0 0 1 2594 577011957 577014550 0.000000e+00 4791.0
1 TraesCS4B01G291800 chr4B 84.766 256 30 5 60 312 545236566 545236815 5.540000e-62 248.0
2 TraesCS4B01G291800 chr4B 84.375 256 33 3 56 309 233235706 233235956 7.170000e-61 244.0
3 TraesCS4B01G291800 chr4B 84.170 259 31 6 56 309 641406729 641406476 2.580000e-60 243.0
4 TraesCS4B01G291800 chr4B 86.719 128 17 0 528 655 527673077 527672950 2.690000e-30 143.0
5 TraesCS4B01G291800 chr4A 94.407 894 42 5 863 1754 7157753 7156866 0.000000e+00 1367.0
6 TraesCS4B01G291800 chr4A 90.717 474 36 2 2129 2594 7156471 7155998 2.190000e-175 625.0
7 TraesCS4B01G291800 chr4A 86.630 359 28 6 1774 2112 7156814 7156456 1.880000e-101 379.0
8 TraesCS4B01G291800 chr4A 93.750 112 6 1 736 846 7157850 7157739 1.600000e-37 167.0
9 TraesCS4B01G291800 chr4D 93.583 748 36 9 863 1599 461557294 461558040 0.000000e+00 1105.0
10 TraesCS4B01G291800 chr4D 91.354 347 29 1 1766 2112 461559572 461559917 8.400000e-130 473.0
11 TraesCS4B01G291800 chr4D 94.118 306 16 2 2290 2594 461560186 461560490 5.060000e-127 464.0
12 TraesCS4B01G291800 chr4D 93.491 169 11 0 2129 2297 461559902 461560070 4.290000e-63 252.0
13 TraesCS4B01G291800 chr4D 94.268 157 9 0 1598 1754 461559373 461559529 9.280000e-60 241.0
14 TraesCS4B01G291800 chr4D 96.396 111 4 0 736 846 461557198 461557308 1.590000e-42 183.0
15 TraesCS4B01G291800 chr4D 89.189 111 12 0 730 840 461498095 461498205 3.480000e-29 139.0
16 TraesCS4B01G291800 chr4D 91.837 49 3 1 351 398 461497682 461497730 1.670000e-07 67.6
17 TraesCS4B01G291800 chr4D 91.837 49 3 1 351 398 461557035 461557083 1.670000e-07 67.6
18 TraesCS4B01G291800 chr6B 85.714 252 29 3 60 309 134106923 134106677 2.560000e-65 259.0
19 TraesCS4B01G291800 chr7B 85.156 256 29 5 58 311 199982941 199983189 1.190000e-63 254.0
20 TraesCS4B01G291800 chr7B 84.980 253 26 9 60 307 468145289 468145044 1.990000e-61 246.0
21 TraesCS4B01G291800 chr3B 84.980 253 30 4 60 309 335120207 335120454 1.540000e-62 250.0
22 TraesCS4B01G291800 chr3B 80.385 260 40 7 476 725 768574282 768574024 1.230000e-43 187.0
23 TraesCS4B01G291800 chr3B 84.049 163 25 1 479 641 145454394 145454233 3.460000e-34 156.0
24 TraesCS4B01G291800 chr2B 85.039 254 29 5 59 309 481884130 481884377 1.540000e-62 250.0
25 TraesCS4B01G291800 chr2B 79.231 260 41 9 474 722 62375005 62375262 4.440000e-38 169.0
26 TraesCS4B01G291800 chr5A 83.146 267 37 5 45 309 644939255 644939515 1.200000e-58 237.0
27 TraesCS4B01G291800 chr7D 86.145 166 22 1 476 641 182954603 182954767 7.380000e-41 178.0
28 TraesCS4B01G291800 chr7D 78.261 253 51 4 473 725 123149679 123149927 2.670000e-35 159.0
29 TraesCS4B01G291800 chr5B 85.714 168 23 1 474 641 509463906 509463740 2.650000e-40 176.0
30 TraesCS4B01G291800 chr5B 83.929 168 23 4 476 641 115420919 115420754 9.610000e-35 158.0
31 TraesCS4B01G291800 chr2D 85.542 166 23 1 476 641 570917175 570917011 3.430000e-39 172.0
32 TraesCS4B01G291800 chr3D 84.940 166 23 1 476 641 352521830 352521993 1.600000e-37 167.0
33 TraesCS4B01G291800 chr5D 89.333 75 7 1 592 666 230412795 230412722 2.750000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G291800 chr4B 577011957 577014550 2593 False 4791.000000 4791 100.000000 1 2594 1 chr4B.!!$F3 2593
1 TraesCS4B01G291800 chr4A 7155998 7157850 1852 True 634.500000 1367 91.376000 736 2594 4 chr4A.!!$R1 1858
2 TraesCS4B01G291800 chr4D 461557035 461560490 3455 False 397.942857 1105 93.578143 351 2594 7 chr4D.!!$F2 2243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.026933 CTGTAAAACGCACACACGCA 59.973 50.0 0.0 0.0 36.19 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 3395 0.035343 GTAGCAGGTGTCCCTTTCCC 60.035 60.0 0.0 0.0 39.89 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.233789 CACACCATTAATGTGGGAAAACG 58.766 43.478 14.25 0.00 43.11 3.60
23 24 3.892588 ACACCATTAATGTGGGAAAACGT 59.107 39.130 14.25 0.00 43.77 3.99
24 25 4.342665 ACACCATTAATGTGGGAAAACGTT 59.657 37.500 14.25 0.00 43.77 3.99
25 26 5.163395 ACACCATTAATGTGGGAAAACGTTT 60.163 36.000 7.96 7.96 43.77 3.60
26 27 6.040616 ACACCATTAATGTGGGAAAACGTTTA 59.959 34.615 15.03 0.00 43.77 2.01
27 28 6.584563 CACCATTAATGTGGGAAAACGTTTAG 59.415 38.462 15.03 0.00 43.77 1.85
28 29 5.575218 CCATTAATGTGGGAAAACGTTTAGC 59.425 40.000 15.03 9.48 35.55 3.09
29 30 6.386654 CATTAATGTGGGAAAACGTTTAGCT 58.613 36.000 15.03 0.00 31.77 3.32
30 31 4.499037 AATGTGGGAAAACGTTTAGCTC 57.501 40.909 15.03 10.17 0.00 4.09
31 32 2.223745 TGTGGGAAAACGTTTAGCTCC 58.776 47.619 15.03 16.88 0.00 4.70
32 33 2.158726 TGTGGGAAAACGTTTAGCTCCT 60.159 45.455 23.00 5.43 0.00 3.69
33 34 2.483106 GTGGGAAAACGTTTAGCTCCTC 59.517 50.000 23.00 16.01 0.00 3.71
34 35 2.370849 TGGGAAAACGTTTAGCTCCTCT 59.629 45.455 23.00 4.08 0.00 3.69
35 36 2.742589 GGGAAAACGTTTAGCTCCTCTG 59.257 50.000 23.00 0.00 0.00 3.35
36 37 3.400255 GGAAAACGTTTAGCTCCTCTGT 58.600 45.455 15.03 0.00 0.00 3.41
37 38 4.562143 GGGAAAACGTTTAGCTCCTCTGTA 60.562 45.833 23.00 0.00 0.00 2.74
38 39 4.992951 GGAAAACGTTTAGCTCCTCTGTAA 59.007 41.667 15.03 0.00 0.00 2.41
39 40 5.467735 GGAAAACGTTTAGCTCCTCTGTAAA 59.532 40.000 15.03 0.00 0.00 2.01
40 41 6.017687 GGAAAACGTTTAGCTCCTCTGTAAAA 60.018 38.462 15.03 0.00 0.00 1.52
41 42 5.919272 AACGTTTAGCTCCTCTGTAAAAC 57.081 39.130 0.00 0.00 0.00 2.43
42 43 4.563524 CGTTTAGCTCCTCTGTAAAACG 57.436 45.455 11.19 11.19 41.84 3.60
43 44 3.181533 CGTTTAGCTCCTCTGTAAAACGC 60.182 47.826 12.32 0.00 41.49 4.84
44 45 3.671008 TTAGCTCCTCTGTAAAACGCA 57.329 42.857 0.00 0.00 0.00 5.24
45 46 1.797025 AGCTCCTCTGTAAAACGCAC 58.203 50.000 0.00 0.00 0.00 5.34
46 47 1.070134 AGCTCCTCTGTAAAACGCACA 59.930 47.619 0.00 0.00 0.00 4.57
47 48 1.194772 GCTCCTCTGTAAAACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
48 49 2.479837 CTCCTCTGTAAAACGCACACA 58.520 47.619 0.00 0.00 0.00 3.72
49 50 2.206750 TCCTCTGTAAAACGCACACAC 58.793 47.619 0.00 0.00 0.00 3.82
50 51 1.070843 CCTCTGTAAAACGCACACACG 60.071 52.381 0.00 0.00 39.50 4.49
51 52 0.302288 TCTGTAAAACGCACACACGC 59.698 50.000 0.00 0.00 36.19 5.34
52 53 0.026933 CTGTAAAACGCACACACGCA 59.973 50.000 0.00 0.00 36.19 5.24
53 54 0.658368 TGTAAAACGCACACACGCAT 59.342 45.000 0.00 0.00 36.19 4.73
54 55 1.041726 GTAAAACGCACACACGCATG 58.958 50.000 0.00 0.00 36.19 4.06
55 56 0.658829 TAAAACGCACACACGCATGC 60.659 50.000 7.91 7.91 38.52 4.06
56 57 2.604644 AAAACGCACACACGCATGCA 62.605 50.000 19.57 0.00 42.17 3.96
57 58 2.405061 AAACGCACACACGCATGCAT 62.405 50.000 19.57 0.00 42.17 3.96
58 59 2.872463 CGCACACACGCATGCATG 60.872 61.111 22.70 22.70 42.17 4.06
59 60 2.256158 GCACACACGCATGCATGT 59.744 55.556 26.79 14.69 41.65 3.21
60 61 1.501292 GCACACACGCATGCATGTA 59.499 52.632 26.79 0.00 41.65 2.29
61 62 0.109827 GCACACACGCATGCATGTAA 60.110 50.000 26.79 0.00 41.65 2.41
62 63 1.886037 CACACACGCATGCATGTAAG 58.114 50.000 26.79 19.82 0.00 2.34
63 64 0.804364 ACACACGCATGCATGTAAGG 59.196 50.000 26.79 10.11 0.00 2.69
64 65 0.099259 CACACGCATGCATGTAAGGG 59.901 55.000 26.79 20.74 0.00 3.95
65 66 1.064621 CACGCATGCATGTAAGGGC 59.935 57.895 26.79 11.22 0.00 5.19
66 67 1.378382 ACGCATGCATGTAAGGGCA 60.378 52.632 26.79 0.00 45.23 5.36
72 73 2.797177 TGCATGTAAGGGCATGTACA 57.203 45.000 0.00 0.00 45.75 2.90
73 74 3.078891 TGCATGTAAGGGCATGTACAA 57.921 42.857 0.00 0.00 45.75 2.41
74 75 3.630168 TGCATGTAAGGGCATGTACAAT 58.370 40.909 0.00 0.00 45.75 2.71
75 76 4.786425 TGCATGTAAGGGCATGTACAATA 58.214 39.130 0.00 0.00 45.75 1.90
76 77 5.196695 TGCATGTAAGGGCATGTACAATAA 58.803 37.500 0.00 0.00 45.75 1.40
77 78 5.832595 TGCATGTAAGGGCATGTACAATAAT 59.167 36.000 0.00 0.00 45.75 1.28
78 79 6.323482 TGCATGTAAGGGCATGTACAATAATT 59.677 34.615 0.00 0.00 45.75 1.40
79 80 6.642131 GCATGTAAGGGCATGTACAATAATTG 59.358 38.462 0.00 0.00 45.75 2.32
80 81 7.469870 GCATGTAAGGGCATGTACAATAATTGA 60.470 37.037 0.00 0.00 45.75 2.57
81 82 8.579006 CATGTAAGGGCATGTACAATAATTGAT 58.421 33.333 0.00 0.00 40.81 2.57
82 83 9.806448 ATGTAAGGGCATGTACAATAATTGATA 57.194 29.630 0.00 0.00 34.08 2.15
83 84 9.634021 TGTAAGGGCATGTACAATAATTGATAA 57.366 29.630 0.00 0.00 0.00 1.75
85 86 8.995027 AAGGGCATGTACAATAATTGATAAGA 57.005 30.769 0.00 0.00 0.00 2.10
86 87 9.592196 AAGGGCATGTACAATAATTGATAAGAT 57.408 29.630 0.00 0.00 0.00 2.40
89 90 9.994432 GGCATGTACAATAATTGATAAGATAGC 57.006 33.333 0.00 0.00 0.00 2.97
125 126 9.851686 AATCTTGCATATAATTTAGAGGTGACA 57.148 29.630 0.00 0.00 0.00 3.58
126 127 8.893219 TCTTGCATATAATTTAGAGGTGACAG 57.107 34.615 0.00 0.00 0.00 3.51
127 128 8.704668 TCTTGCATATAATTTAGAGGTGACAGA 58.295 33.333 0.00 0.00 0.00 3.41
128 129 9.330063 CTTGCATATAATTTAGAGGTGACAGAA 57.670 33.333 0.00 0.00 0.00 3.02
129 130 9.679661 TTGCATATAATTTAGAGGTGACAGAAA 57.320 29.630 0.00 0.00 0.00 2.52
130 131 9.679661 TGCATATAATTTAGAGGTGACAGAAAA 57.320 29.630 0.00 0.00 0.00 2.29
159 160 7.633018 TTTATAATGGGTCATCTCTTAGCCT 57.367 36.000 0.00 0.00 34.30 4.58
160 161 7.633018 TTATAATGGGTCATCTCTTAGCCTT 57.367 36.000 0.00 0.00 34.30 4.35
161 162 8.736097 TTATAATGGGTCATCTCTTAGCCTTA 57.264 34.615 0.00 0.00 34.30 2.69
162 163 7.821134 ATAATGGGTCATCTCTTAGCCTTAT 57.179 36.000 0.00 0.00 34.30 1.73
163 164 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
164 165 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
165 166 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
166 167 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
167 168 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
168 169 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
169 170 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
170 171 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
171 172 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
173 174 9.995003 CATCTCTTAGCCTTATCTTCAATAAGT 57.005 33.333 4.59 0.00 34.13 2.24
182 183 9.438228 GCCTTATCTTCAATAAGTAGTTATCCC 57.562 37.037 3.27 0.00 34.13 3.85
189 190 9.769093 CTTCAATAAGTAGTTATCCCAAAAACG 57.231 33.333 3.27 0.00 0.00 3.60
190 191 8.851541 TCAATAAGTAGTTATCCCAAAAACGT 57.148 30.769 3.27 0.00 0.00 3.99
191 192 8.723311 TCAATAAGTAGTTATCCCAAAAACGTG 58.277 33.333 3.27 0.00 0.00 4.49
192 193 5.952526 AAGTAGTTATCCCAAAAACGTGG 57.047 39.130 0.00 0.00 38.51 4.94
193 194 4.976864 AGTAGTTATCCCAAAAACGTGGT 58.023 39.130 0.00 0.00 36.90 4.16
194 195 4.758165 AGTAGTTATCCCAAAAACGTGGTG 59.242 41.667 0.00 0.00 36.90 4.17
195 196 3.822940 AGTTATCCCAAAAACGTGGTGA 58.177 40.909 0.00 0.00 36.90 4.02
196 197 3.818773 AGTTATCCCAAAAACGTGGTGAG 59.181 43.478 0.00 0.00 36.90 3.51
197 198 2.649531 ATCCCAAAAACGTGGTGAGA 57.350 45.000 0.00 0.00 36.90 3.27
198 199 1.670791 TCCCAAAAACGTGGTGAGAC 58.329 50.000 0.00 0.00 36.90 3.36
199 200 1.065345 TCCCAAAAACGTGGTGAGACA 60.065 47.619 0.00 0.00 36.90 3.41
200 201 1.953686 CCCAAAAACGTGGTGAGACAT 59.046 47.619 0.00 0.00 36.90 3.06
201 202 3.142951 CCCAAAAACGTGGTGAGACATA 58.857 45.455 0.00 0.00 36.90 2.29
202 203 3.756434 CCCAAAAACGTGGTGAGACATAT 59.244 43.478 0.00 0.00 36.90 1.78
203 204 4.217550 CCCAAAAACGTGGTGAGACATATT 59.782 41.667 0.00 0.00 36.90 1.28
204 205 5.153513 CCAAAAACGTGGTGAGACATATTG 58.846 41.667 0.00 0.00 33.63 1.90
205 206 5.278266 CCAAAAACGTGGTGAGACATATTGT 60.278 40.000 0.00 0.00 33.63 2.71
206 207 5.356882 AAAACGTGGTGAGACATATTGTG 57.643 39.130 0.00 0.00 0.00 3.33
207 208 2.346803 ACGTGGTGAGACATATTGTGC 58.653 47.619 0.00 0.00 0.00 4.57
208 209 2.028112 ACGTGGTGAGACATATTGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
209 210 3.194755 ACGTGGTGAGACATATTGTGCTA 59.805 43.478 0.00 0.00 0.00 3.49
210 211 4.141937 ACGTGGTGAGACATATTGTGCTAT 60.142 41.667 0.00 0.00 0.00 2.97
211 212 4.209911 CGTGGTGAGACATATTGTGCTATG 59.790 45.833 0.00 0.00 35.61 2.23
212 213 4.024556 GTGGTGAGACATATTGTGCTATGC 60.025 45.833 0.00 0.00 33.26 3.14
213 214 4.141642 TGGTGAGACATATTGTGCTATGCT 60.142 41.667 0.00 0.00 33.26 3.79
214 215 5.070313 TGGTGAGACATATTGTGCTATGCTA 59.930 40.000 0.00 0.00 33.26 3.49
215 216 5.991606 GGTGAGACATATTGTGCTATGCTAA 59.008 40.000 0.00 0.00 33.26 3.09
216 217 6.146837 GGTGAGACATATTGTGCTATGCTAAG 59.853 42.308 0.00 0.00 33.26 2.18
217 218 6.925718 GTGAGACATATTGTGCTATGCTAAGA 59.074 38.462 0.00 0.00 33.26 2.10
218 219 7.116090 GTGAGACATATTGTGCTATGCTAAGAG 59.884 40.741 0.00 0.00 33.26 2.85
219 220 7.014615 TGAGACATATTGTGCTATGCTAAGAGA 59.985 37.037 0.00 0.00 33.26 3.10
220 221 7.151308 AGACATATTGTGCTATGCTAAGAGAC 58.849 38.462 0.00 0.00 33.26 3.36
221 222 6.226787 ACATATTGTGCTATGCTAAGAGACC 58.773 40.000 0.00 0.00 33.26 3.85
222 223 4.760530 ATTGTGCTATGCTAAGAGACCA 57.239 40.909 0.00 0.00 0.00 4.02
223 224 4.760530 TTGTGCTATGCTAAGAGACCAT 57.239 40.909 0.00 0.00 0.00 3.55
224 225 4.327982 TGTGCTATGCTAAGAGACCATC 57.672 45.455 0.00 0.00 0.00 3.51
225 226 3.963374 TGTGCTATGCTAAGAGACCATCT 59.037 43.478 0.00 0.00 41.27 2.90
227 228 5.104776 TGTGCTATGCTAAGAGACCATCTTT 60.105 40.000 0.00 0.00 46.49 2.52
228 229 5.819901 GTGCTATGCTAAGAGACCATCTTTT 59.180 40.000 0.00 0.00 46.49 2.27
229 230 5.819379 TGCTATGCTAAGAGACCATCTTTTG 59.181 40.000 0.00 0.00 46.49 2.44
230 231 5.819901 GCTATGCTAAGAGACCATCTTTTGT 59.180 40.000 0.00 0.00 46.49 2.83
231 232 6.986817 GCTATGCTAAGAGACCATCTTTTGTA 59.013 38.462 0.00 0.00 46.49 2.41
232 233 7.659390 GCTATGCTAAGAGACCATCTTTTGTAT 59.341 37.037 0.00 0.00 46.49 2.29
233 234 9.553064 CTATGCTAAGAGACCATCTTTTGTATT 57.447 33.333 0.00 0.00 46.49 1.89
234 235 7.849804 TGCTAAGAGACCATCTTTTGTATTC 57.150 36.000 0.00 0.00 46.49 1.75
235 236 7.624549 TGCTAAGAGACCATCTTTTGTATTCT 58.375 34.615 0.00 0.00 46.49 2.40
236 237 7.550551 TGCTAAGAGACCATCTTTTGTATTCTG 59.449 37.037 0.00 0.00 46.49 3.02
237 238 7.550906 GCTAAGAGACCATCTTTTGTATTCTGT 59.449 37.037 0.00 0.00 46.49 3.41
238 239 9.442047 CTAAGAGACCATCTTTTGTATTCTGTT 57.558 33.333 0.00 0.00 46.49 3.16
240 241 9.793259 AAGAGACCATCTTTTGTATTCTGTTAA 57.207 29.630 0.00 0.00 46.49 2.01
241 242 9.793259 AGAGACCATCTTTTGTATTCTGTTAAA 57.207 29.630 0.00 0.00 32.99 1.52
286 287 9.442047 TTTTTATGAATTCTCTCTTCTCCACTC 57.558 33.333 7.05 0.00 0.00 3.51
287 288 7.724490 TTATGAATTCTCTCTTCTCCACTCA 57.276 36.000 7.05 0.00 0.00 3.41
288 289 5.398603 TGAATTCTCTCTTCTCCACTCAC 57.601 43.478 7.05 0.00 0.00 3.51
289 290 4.221703 TGAATTCTCTCTTCTCCACTCACC 59.778 45.833 7.05 0.00 0.00 4.02
290 291 2.980246 TCTCTCTTCTCCACTCACCA 57.020 50.000 0.00 0.00 0.00 4.17
291 292 3.464720 TCTCTCTTCTCCACTCACCAT 57.535 47.619 0.00 0.00 0.00 3.55
292 293 3.784178 TCTCTCTTCTCCACTCACCATT 58.216 45.455 0.00 0.00 0.00 3.16
293 294 4.163427 TCTCTCTTCTCCACTCACCATTT 58.837 43.478 0.00 0.00 0.00 2.32
294 295 5.333581 TCTCTCTTCTCCACTCACCATTTA 58.666 41.667 0.00 0.00 0.00 1.40
295 296 5.960811 TCTCTCTTCTCCACTCACCATTTAT 59.039 40.000 0.00 0.00 0.00 1.40
296 297 6.097554 TCTCTCTTCTCCACTCACCATTTATC 59.902 42.308 0.00 0.00 0.00 1.75
297 298 5.129485 TCTCTTCTCCACTCACCATTTATCC 59.871 44.000 0.00 0.00 0.00 2.59
298 299 5.032846 TCTTCTCCACTCACCATTTATCCT 58.967 41.667 0.00 0.00 0.00 3.24
299 300 6.202331 TCTTCTCCACTCACCATTTATCCTA 58.798 40.000 0.00 0.00 0.00 2.94
300 301 5.871396 TCTCCACTCACCATTTATCCTAC 57.129 43.478 0.00 0.00 0.00 3.18
301 302 5.277250 TCTCCACTCACCATTTATCCTACA 58.723 41.667 0.00 0.00 0.00 2.74
302 303 5.905331 TCTCCACTCACCATTTATCCTACAT 59.095 40.000 0.00 0.00 0.00 2.29
303 304 5.928976 TCCACTCACCATTTATCCTACATG 58.071 41.667 0.00 0.00 0.00 3.21
304 305 5.665360 TCCACTCACCATTTATCCTACATGA 59.335 40.000 0.00 0.00 0.00 3.07
305 306 5.760253 CCACTCACCATTTATCCTACATGAC 59.240 44.000 0.00 0.00 0.00 3.06
306 307 6.348498 CACTCACCATTTATCCTACATGACA 58.652 40.000 0.00 0.00 0.00 3.58
307 308 6.258727 CACTCACCATTTATCCTACATGACAC 59.741 42.308 0.00 0.00 0.00 3.67
308 309 6.156949 ACTCACCATTTATCCTACATGACACT 59.843 38.462 0.00 0.00 0.00 3.55
309 310 6.957631 TCACCATTTATCCTACATGACACTT 58.042 36.000 0.00 0.00 0.00 3.16
310 311 7.047891 TCACCATTTATCCTACATGACACTTC 58.952 38.462 0.00 0.00 0.00 3.01
311 312 6.260936 CACCATTTATCCTACATGACACTTCC 59.739 42.308 0.00 0.00 0.00 3.46
312 313 5.466728 CCATTTATCCTACATGACACTTCCG 59.533 44.000 0.00 0.00 0.00 4.30
313 314 4.665833 TTATCCTACATGACACTTCCGG 57.334 45.455 0.00 0.00 0.00 5.14
314 315 1.933021 TCCTACATGACACTTCCGGT 58.067 50.000 0.00 0.00 0.00 5.28
325 326 3.099267 CACTTCCGGTGCTATCTTAGG 57.901 52.381 0.00 0.00 39.22 2.69
326 327 2.693591 CACTTCCGGTGCTATCTTAGGA 59.306 50.000 0.00 0.00 39.22 2.94
327 328 2.959707 ACTTCCGGTGCTATCTTAGGAG 59.040 50.000 0.00 0.00 0.00 3.69
328 329 2.750141 TCCGGTGCTATCTTAGGAGT 57.250 50.000 0.00 0.00 0.00 3.85
329 330 2.307768 TCCGGTGCTATCTTAGGAGTG 58.692 52.381 0.00 0.00 0.00 3.51
330 331 2.032620 CCGGTGCTATCTTAGGAGTGT 58.967 52.381 0.00 0.00 0.00 3.55
331 332 2.034812 CCGGTGCTATCTTAGGAGTGTC 59.965 54.545 0.00 0.00 0.00 3.67
332 333 2.688446 CGGTGCTATCTTAGGAGTGTCA 59.312 50.000 0.00 0.00 0.00 3.58
333 334 3.489398 CGGTGCTATCTTAGGAGTGTCAC 60.489 52.174 0.00 0.00 0.00 3.67
334 335 3.489398 GGTGCTATCTTAGGAGTGTCACG 60.489 52.174 0.00 0.00 0.00 4.35
335 336 2.099263 TGCTATCTTAGGAGTGTCACGC 59.901 50.000 0.00 0.00 0.00 5.34
336 337 2.099263 GCTATCTTAGGAGTGTCACGCA 59.901 50.000 9.04 0.00 0.00 5.24
337 338 2.949451 ATCTTAGGAGTGTCACGCAG 57.051 50.000 9.04 0.00 0.00 5.18
338 339 0.888619 TCTTAGGAGTGTCACGCAGG 59.111 55.000 9.04 0.00 0.00 4.85
339 340 0.603569 CTTAGGAGTGTCACGCAGGT 59.396 55.000 9.04 0.00 0.00 4.00
340 341 1.816835 CTTAGGAGTGTCACGCAGGTA 59.183 52.381 9.04 0.00 0.00 3.08
341 342 2.139323 TAGGAGTGTCACGCAGGTAT 57.861 50.000 9.04 0.00 0.00 2.73
342 343 2.139323 AGGAGTGTCACGCAGGTATA 57.861 50.000 9.04 0.00 0.00 1.47
343 344 2.667470 AGGAGTGTCACGCAGGTATAT 58.333 47.619 9.04 0.00 0.00 0.86
344 345 3.031736 AGGAGTGTCACGCAGGTATATT 58.968 45.455 9.04 0.00 0.00 1.28
345 346 3.068307 AGGAGTGTCACGCAGGTATATTC 59.932 47.826 9.04 0.00 0.00 1.75
346 347 3.068307 GGAGTGTCACGCAGGTATATTCT 59.932 47.826 9.04 0.00 0.00 2.40
347 348 4.441634 GGAGTGTCACGCAGGTATATTCTT 60.442 45.833 9.04 0.00 0.00 2.52
348 349 4.683832 AGTGTCACGCAGGTATATTCTTC 58.316 43.478 0.00 0.00 0.00 2.87
349 350 4.402793 AGTGTCACGCAGGTATATTCTTCT 59.597 41.667 0.00 0.00 0.00 2.85
398 400 5.909210 CAGTAGCGACACTGCATATTATTG 58.091 41.667 0.00 0.00 39.54 1.90
399 401 4.991056 AGTAGCGACACTGCATATTATTGG 59.009 41.667 0.00 0.00 37.31 3.16
400 402 4.071961 AGCGACACTGCATATTATTGGA 57.928 40.909 0.00 0.00 37.31 3.53
403 405 5.871524 AGCGACACTGCATATTATTGGATAG 59.128 40.000 0.00 0.00 37.31 2.08
404 406 5.869344 GCGACACTGCATATTATTGGATAGA 59.131 40.000 0.00 0.00 34.15 1.98
406 408 7.065085 GCGACACTGCATATTATTGGATAGATT 59.935 37.037 0.00 0.00 34.15 2.40
450 491 1.592669 GACGCCATGGTCCATCTCG 60.593 63.158 14.67 16.61 0.00 4.04
455 496 1.620819 GCCATGGTCCATCTCGATAGT 59.379 52.381 14.67 0.00 37.40 2.12
456 497 2.611473 GCCATGGTCCATCTCGATAGTG 60.611 54.545 14.67 0.00 37.40 2.74
457 498 2.630098 CCATGGTCCATCTCGATAGTGT 59.370 50.000 2.57 0.00 37.40 3.55
476 517 4.024048 AGTGTTGTTGTTCGATGGCTTTAG 60.024 41.667 0.00 0.00 0.00 1.85
477 518 3.252215 TGTTGTTGTTCGATGGCTTTAGG 59.748 43.478 0.00 0.00 0.00 2.69
478 519 2.432444 TGTTGTTCGATGGCTTTAGGG 58.568 47.619 0.00 0.00 0.00 3.53
479 520 1.132453 GTTGTTCGATGGCTTTAGGGC 59.868 52.381 0.00 0.00 41.27 5.19
490 531 5.317600 TGGCTTTAGGGCATATACAATGA 57.682 39.130 0.00 0.00 45.79 2.57
491 532 5.891198 TGGCTTTAGGGCATATACAATGAT 58.109 37.500 0.00 0.00 45.79 2.45
492 533 7.026697 TGGCTTTAGGGCATATACAATGATA 57.973 36.000 0.00 0.00 45.79 2.15
493 534 7.112122 TGGCTTTAGGGCATATACAATGATAG 58.888 38.462 0.00 0.00 45.79 2.08
494 535 7.037658 TGGCTTTAGGGCATATACAATGATAGA 60.038 37.037 0.00 0.00 45.79 1.98
495 536 7.995488 GGCTTTAGGGCATATACAATGATAGAT 59.005 37.037 0.00 0.00 40.53 1.98
501 542 9.271921 AGGGCATATACAATGATAGATAAGACA 57.728 33.333 0.00 0.00 0.00 3.41
502 543 9.539825 GGGCATATACAATGATAGATAAGACAG 57.460 37.037 0.00 0.00 0.00 3.51
503 544 9.039870 GGCATATACAATGATAGATAAGACAGC 57.960 37.037 0.00 0.00 0.00 4.40
504 545 9.039870 GCATATACAATGATAGATAAGACAGCC 57.960 37.037 0.00 0.00 0.00 4.85
509 550 8.256356 ACAATGATAGATAAGACAGCCTTACT 57.744 34.615 0.00 0.00 39.93 2.24
510 551 8.709308 ACAATGATAGATAAGACAGCCTTACTT 58.291 33.333 0.00 0.00 39.93 2.24
511 552 9.553064 CAATGATAGATAAGACAGCCTTACTTT 57.447 33.333 0.00 0.00 39.93 2.66
520 561 6.502136 AGACAGCCTTACTTTAAATCTTGC 57.498 37.500 0.00 0.00 0.00 4.01
521 562 6.003950 AGACAGCCTTACTTTAAATCTTGCA 58.996 36.000 0.00 0.00 0.00 4.08
522 563 6.660949 AGACAGCCTTACTTTAAATCTTGCAT 59.339 34.615 0.00 0.00 0.00 3.96
523 564 7.177392 AGACAGCCTTACTTTAAATCTTGCATT 59.823 33.333 0.00 0.00 0.00 3.56
524 565 7.315890 ACAGCCTTACTTTAAATCTTGCATTC 58.684 34.615 0.00 0.00 0.00 2.67
525 566 7.039784 ACAGCCTTACTTTAAATCTTGCATTCA 60.040 33.333 0.00 0.00 0.00 2.57
526 567 7.814107 CAGCCTTACTTTAAATCTTGCATTCAA 59.186 33.333 0.00 0.00 0.00 2.69
527 568 8.534496 AGCCTTACTTTAAATCTTGCATTCAAT 58.466 29.630 0.00 0.00 0.00 2.57
528 569 9.154847 GCCTTACTTTAAATCTTGCATTCAATT 57.845 29.630 0.00 0.00 0.00 2.32
610 651 9.948964 ATAACTAGTTATTCCTAAAAACACGGT 57.051 29.630 20.27 0.00 32.21 4.83
612 653 9.777297 AACTAGTTATTCCTAAAAACACGGTAA 57.223 29.630 6.26 0.00 0.00 2.85
613 654 9.428097 ACTAGTTATTCCTAAAAACACGGTAAG 57.572 33.333 0.00 0.00 0.00 2.34
614 655 9.643693 CTAGTTATTCCTAAAAACACGGTAAGA 57.356 33.333 0.00 0.00 0.00 2.10
615 656 8.315391 AGTTATTCCTAAAAACACGGTAAGAC 57.685 34.615 0.00 0.00 0.00 3.01
616 657 7.933033 AGTTATTCCTAAAAACACGGTAAGACA 59.067 33.333 0.00 0.00 0.00 3.41
617 658 8.724229 GTTATTCCTAAAAACACGGTAAGACAT 58.276 33.333 0.00 0.00 0.00 3.06
618 659 9.941325 TTATTCCTAAAAACACGGTAAGACATA 57.059 29.630 0.00 0.00 0.00 2.29
620 661 8.851541 TTCCTAAAAACACGGTAAGACATATT 57.148 30.769 0.00 0.00 0.00 1.28
621 662 9.941325 TTCCTAAAAACACGGTAAGACATATTA 57.059 29.630 0.00 0.00 0.00 0.98
624 665 9.646336 CTAAAAACACGGTAAGACATATTATGC 57.354 33.333 3.52 0.00 0.00 3.14
625 666 7.859325 AAAACACGGTAAGACATATTATGCT 57.141 32.000 3.52 0.04 0.00 3.79
626 667 8.951787 AAAACACGGTAAGACATATTATGCTA 57.048 30.769 3.52 0.00 0.00 3.49
627 668 8.951787 AAACACGGTAAGACATATTATGCTAA 57.048 30.769 3.52 0.00 0.00 3.09
628 669 8.589335 AACACGGTAAGACATATTATGCTAAG 57.411 34.615 3.52 0.00 0.00 2.18
629 670 7.948357 ACACGGTAAGACATATTATGCTAAGA 58.052 34.615 3.52 0.00 0.00 2.10
630 671 8.082852 ACACGGTAAGACATATTATGCTAAGAG 58.917 37.037 3.52 0.00 0.00 2.85
631 672 8.297426 CACGGTAAGACATATTATGCTAAGAGA 58.703 37.037 3.52 0.00 0.00 3.10
632 673 9.026121 ACGGTAAGACATATTATGCTAAGAGAT 57.974 33.333 3.52 0.00 0.00 2.75
633 674 9.509855 CGGTAAGACATATTATGCTAAGAGATC 57.490 37.037 3.52 0.00 0.00 2.75
668 709 9.578439 AATAAGATAAGACAAGCATTTTCTTGC 57.422 29.630 3.67 0.00 45.43 4.01
678 719 4.374990 GCATTTTCTTGCGGTTTCTTTC 57.625 40.909 0.00 0.00 32.06 2.62
679 720 4.051237 GCATTTTCTTGCGGTTTCTTTCT 58.949 39.130 0.00 0.00 32.06 2.52
680 721 4.148871 GCATTTTCTTGCGGTTTCTTTCTC 59.851 41.667 0.00 0.00 32.06 2.87
681 722 3.982576 TTTCTTGCGGTTTCTTTCTCC 57.017 42.857 0.00 0.00 0.00 3.71
682 723 2.930826 TCTTGCGGTTTCTTTCTCCT 57.069 45.000 0.00 0.00 0.00 3.69
683 724 2.767505 TCTTGCGGTTTCTTTCTCCTC 58.232 47.619 0.00 0.00 0.00 3.71
684 725 2.368875 TCTTGCGGTTTCTTTCTCCTCT 59.631 45.455 0.00 0.00 0.00 3.69
685 726 3.576982 TCTTGCGGTTTCTTTCTCCTCTA 59.423 43.478 0.00 0.00 0.00 2.43
686 727 3.314541 TGCGGTTTCTTTCTCCTCTAC 57.685 47.619 0.00 0.00 0.00 2.59
687 728 2.631062 TGCGGTTTCTTTCTCCTCTACA 59.369 45.455 0.00 0.00 0.00 2.74
688 729 3.260884 TGCGGTTTCTTTCTCCTCTACAT 59.739 43.478 0.00 0.00 0.00 2.29
689 730 3.866327 GCGGTTTCTTTCTCCTCTACATC 59.134 47.826 0.00 0.00 0.00 3.06
690 731 4.620803 GCGGTTTCTTTCTCCTCTACATCA 60.621 45.833 0.00 0.00 0.00 3.07
691 732 5.479306 CGGTTTCTTTCTCCTCTACATCAA 58.521 41.667 0.00 0.00 0.00 2.57
692 733 5.348997 CGGTTTCTTTCTCCTCTACATCAAC 59.651 44.000 0.00 0.00 0.00 3.18
693 734 5.348997 GGTTTCTTTCTCCTCTACATCAACG 59.651 44.000 0.00 0.00 0.00 4.10
694 735 5.723672 TTCTTTCTCCTCTACATCAACGT 57.276 39.130 0.00 0.00 0.00 3.99
695 736 5.723672 TCTTTCTCCTCTACATCAACGTT 57.276 39.130 0.00 0.00 0.00 3.99
696 737 6.097915 TCTTTCTCCTCTACATCAACGTTT 57.902 37.500 0.00 0.00 0.00 3.60
697 738 7.223260 TCTTTCTCCTCTACATCAACGTTTA 57.777 36.000 0.00 0.00 0.00 2.01
698 739 7.837863 TCTTTCTCCTCTACATCAACGTTTAT 58.162 34.615 0.00 0.00 0.00 1.40
699 740 7.759886 TCTTTCTCCTCTACATCAACGTTTATG 59.240 37.037 18.53 18.53 0.00 1.90
700 741 5.348986 TCTCCTCTACATCAACGTTTATGC 58.651 41.667 19.74 0.00 0.00 3.14
701 742 5.127194 TCTCCTCTACATCAACGTTTATGCT 59.873 40.000 19.74 11.08 0.00 3.79
702 743 6.320418 TCTCCTCTACATCAACGTTTATGCTA 59.680 38.462 19.74 11.52 0.00 3.49
703 744 6.869695 TCCTCTACATCAACGTTTATGCTAA 58.130 36.000 19.74 7.29 0.00 3.09
704 745 6.978659 TCCTCTACATCAACGTTTATGCTAAG 59.021 38.462 19.74 14.88 0.00 2.18
705 746 6.757010 CCTCTACATCAACGTTTATGCTAAGT 59.243 38.462 19.74 5.32 0.00 2.24
706 747 7.254117 CCTCTACATCAACGTTTATGCTAAGTG 60.254 40.741 19.74 14.74 0.00 3.16
707 748 5.545658 ACATCAACGTTTATGCTAAGTGG 57.454 39.130 19.74 0.00 0.00 4.00
708 749 4.142687 ACATCAACGTTTATGCTAAGTGGC 60.143 41.667 19.74 0.00 0.00 5.01
709 750 3.403968 TCAACGTTTATGCTAAGTGGCA 58.596 40.909 0.00 0.00 46.63 4.92
710 751 3.187637 TCAACGTTTATGCTAAGTGGCAC 59.812 43.478 10.29 10.29 45.36 5.01
711 752 3.053831 ACGTTTATGCTAAGTGGCACT 57.946 42.857 15.88 15.88 45.36 4.40
712 753 3.000727 ACGTTTATGCTAAGTGGCACTC 58.999 45.455 22.31 9.33 45.36 3.51
713 754 2.351726 CGTTTATGCTAAGTGGCACTCC 59.648 50.000 22.31 12.76 45.36 3.85
714 755 3.610911 GTTTATGCTAAGTGGCACTCCT 58.389 45.455 22.31 9.00 45.36 3.69
715 756 4.679639 CGTTTATGCTAAGTGGCACTCCTA 60.680 45.833 22.31 9.76 45.36 2.94
716 757 5.183228 GTTTATGCTAAGTGGCACTCCTAA 58.817 41.667 22.31 9.23 45.36 2.69
717 758 3.550437 ATGCTAAGTGGCACTCCTAAG 57.450 47.619 22.31 16.14 45.36 2.18
718 759 2.536066 TGCTAAGTGGCACTCCTAAGA 58.464 47.619 22.31 0.15 37.29 2.10
719 760 3.107601 TGCTAAGTGGCACTCCTAAGAT 58.892 45.455 22.31 5.74 37.29 2.40
720 761 4.286707 TGCTAAGTGGCACTCCTAAGATA 58.713 43.478 22.31 6.70 37.29 1.98
721 762 4.342378 TGCTAAGTGGCACTCCTAAGATAG 59.658 45.833 22.31 16.91 37.29 2.08
722 763 3.828875 AAGTGGCACTCCTAAGATAGC 57.171 47.619 22.31 0.00 0.00 2.97
723 764 2.752030 AGTGGCACTCCTAAGATAGCA 58.248 47.619 15.88 0.00 0.00 3.49
724 765 2.432510 AGTGGCACTCCTAAGATAGCAC 59.567 50.000 15.88 0.00 0.00 4.40
725 766 1.409064 TGGCACTCCTAAGATAGCACG 59.591 52.381 0.00 0.00 0.00 5.34
726 767 1.409427 GGCACTCCTAAGATAGCACGT 59.591 52.381 0.00 0.00 0.00 4.49
727 768 2.464865 GCACTCCTAAGATAGCACGTG 58.535 52.381 12.28 12.28 0.00 4.49
728 769 2.464865 CACTCCTAAGATAGCACGTGC 58.535 52.381 32.79 32.79 42.49 5.34
729 770 2.100197 ACTCCTAAGATAGCACGTGCA 58.900 47.619 39.21 25.93 45.16 4.57
730 771 2.695666 ACTCCTAAGATAGCACGTGCAT 59.304 45.455 39.21 29.00 45.16 3.96
731 772 3.055591 CTCCTAAGATAGCACGTGCATG 58.944 50.000 39.21 20.15 45.16 4.06
732 773 1.528586 CCTAAGATAGCACGTGCATGC 59.471 52.381 39.21 26.64 46.50 4.06
761 802 3.686916 TTAACGATGACCATCACCACA 57.313 42.857 10.24 0.00 37.69 4.17
764 805 0.721154 CGATGACCATCACCACAACG 59.279 55.000 10.24 0.00 37.69 4.10
806 847 8.985805 CGTACATAATTACCATTCCTTTCCTAC 58.014 37.037 0.00 0.00 0.00 3.18
846 888 6.595326 TCGTCATCAACTAATGAGAATTGCTT 59.405 34.615 0.00 0.00 42.53 3.91
847 889 7.763985 TCGTCATCAACTAATGAGAATTGCTTA 59.236 33.333 0.00 0.00 42.53 3.09
848 890 8.554528 CGTCATCAACTAATGAGAATTGCTTAT 58.445 33.333 0.00 0.00 42.53 1.73
851 893 9.378597 CATCAACTAATGAGAATTGCTTATTCG 57.621 33.333 6.51 0.00 45.99 3.34
852 894 7.409697 TCAACTAATGAGAATTGCTTATTCGC 58.590 34.615 8.25 8.25 45.99 4.70
924 966 3.825014 TGTGCGTCCTATATAACTCCTCC 59.175 47.826 0.00 0.00 0.00 4.30
932 974 7.443477 GTCCTATATAACTCCTCCCAGTTTTC 58.557 42.308 0.00 0.00 37.75 2.29
935 977 1.834540 AACTCCTCCCAGTTTTCCCT 58.165 50.000 0.00 0.00 32.34 4.20
936 978 2.735259 ACTCCTCCCAGTTTTCCCTA 57.265 50.000 0.00 0.00 0.00 3.53
938 980 1.560146 CTCCTCCCAGTTTTCCCTACC 59.440 57.143 0.00 0.00 0.00 3.18
939 981 1.153565 TCCTCCCAGTTTTCCCTACCT 59.846 52.381 0.00 0.00 0.00 3.08
940 982 1.560146 CCTCCCAGTTTTCCCTACCTC 59.440 57.143 0.00 0.00 0.00 3.85
941 983 2.266279 CTCCCAGTTTTCCCTACCTCA 58.734 52.381 0.00 0.00 0.00 3.86
942 984 2.846827 CTCCCAGTTTTCCCTACCTCAT 59.153 50.000 0.00 0.00 0.00 2.90
943 985 2.844348 TCCCAGTTTTCCCTACCTCATC 59.156 50.000 0.00 0.00 0.00 2.92
944 986 2.846827 CCCAGTTTTCCCTACCTCATCT 59.153 50.000 0.00 0.00 0.00 2.90
945 987 4.037927 CCCAGTTTTCCCTACCTCATCTA 58.962 47.826 0.00 0.00 0.00 1.98
946 988 4.660771 CCCAGTTTTCCCTACCTCATCTAT 59.339 45.833 0.00 0.00 0.00 1.98
947 989 5.844516 CCCAGTTTTCCCTACCTCATCTATA 59.155 44.000 0.00 0.00 0.00 1.31
948 990 6.014156 CCCAGTTTTCCCTACCTCATCTATAG 60.014 46.154 0.00 0.00 0.00 1.31
977 1020 1.068748 TCAGTAGTCGTTCGCCACTTC 60.069 52.381 0.00 0.00 0.00 3.01
980 1023 2.816087 AGTAGTCGTTCGCCACTTCTAA 59.184 45.455 0.00 0.00 0.00 2.10
1029 1089 1.830145 GGCCGCCTTGATCCTTCTA 59.170 57.895 0.71 0.00 0.00 2.10
1242 1302 2.610859 GCAACCTCCTCCTCCCCA 60.611 66.667 0.00 0.00 0.00 4.96
1281 1341 1.204062 CGTGATGAACAACGCGCTT 59.796 52.632 5.73 0.00 33.62 4.68
1387 1447 1.591703 CTAAGCCTGCACCTCGTGA 59.408 57.895 0.00 0.00 35.23 4.35
1389 1449 0.108186 TAAGCCTGCACCTCGTGATG 60.108 55.000 0.00 0.00 35.23 3.07
1401 1461 4.467084 GTGATGGAGGCCGGCGAA 62.467 66.667 22.54 5.83 0.00 4.70
1417 1477 1.821258 GAATACGGGGGAAGCTCGT 59.179 57.895 2.81 2.81 40.40 4.18
1625 3019 2.890474 CATGTCTGGCCGGCGTAC 60.890 66.667 22.54 18.26 0.00 3.67
1650 3044 4.259570 CGTCGAGTGAGCATACTGAATTTG 60.260 45.833 0.00 0.00 0.00 2.32
1651 3045 4.627467 GTCGAGTGAGCATACTGAATTTGT 59.373 41.667 0.00 0.00 0.00 2.83
1674 3068 1.743772 CGATGACATCCAGGGGACAAC 60.744 57.143 9.87 0.00 32.98 3.32
1720 3114 4.202040 TGAGCAACCTCACAATTTCAAGTG 60.202 41.667 0.00 0.00 42.98 3.16
1756 3150 8.915871 AGACACATGTGTTGCAAAAATATATC 57.084 30.769 31.03 13.67 45.05 1.63
1757 3151 7.697710 AGACACATGTGTTGCAAAAATATATCG 59.302 33.333 31.03 0.00 45.05 2.92
1758 3152 7.534282 ACACATGTGTTGCAAAAATATATCGA 58.466 30.769 25.76 0.00 41.83 3.59
1759 3153 7.697710 ACACATGTGTTGCAAAAATATATCGAG 59.302 33.333 25.76 0.00 41.83 4.04
1760 3154 7.166307 CACATGTGTTGCAAAAATATATCGAGG 59.834 37.037 18.03 0.00 0.00 4.63
1761 3155 6.993786 TGTGTTGCAAAAATATATCGAGGA 57.006 33.333 0.00 0.00 0.00 3.71
1763 3157 7.471721 TGTGTTGCAAAAATATATCGAGGAAG 58.528 34.615 0.00 0.00 0.00 3.46
1764 3158 7.335673 TGTGTTGCAAAAATATATCGAGGAAGA 59.664 33.333 0.00 0.00 0.00 2.87
1765 3159 7.640240 GTGTTGCAAAAATATATCGAGGAAGAC 59.360 37.037 0.00 0.00 0.00 3.01
1766 3160 7.335673 TGTTGCAAAAATATATCGAGGAAGACA 59.664 33.333 0.00 0.00 0.00 3.41
1767 3161 7.857734 TGCAAAAATATATCGAGGAAGACAA 57.142 32.000 0.00 0.00 0.00 3.18
1768 3162 7.919690 TGCAAAAATATATCGAGGAAGACAAG 58.080 34.615 0.00 0.00 0.00 3.16
1769 3163 7.012327 TGCAAAAATATATCGAGGAAGACAAGG 59.988 37.037 0.00 0.00 0.00 3.61
1770 3164 7.355778 CAAAAATATATCGAGGAAGACAAGGC 58.644 38.462 0.00 0.00 0.00 4.35
1779 3205 2.965831 AGGAAGACAAGGCGCTGATATA 59.034 45.455 7.64 0.00 0.00 0.86
1786 3212 6.940739 AGACAAGGCGCTGATATATATCTTT 58.059 36.000 20.74 6.04 33.88 2.52
1791 3217 7.425224 AGGCGCTGATATATATCTTTTACCT 57.575 36.000 20.74 16.97 33.88 3.08
1816 3242 8.142994 TGATATTTATCGAGGAAAACAAGAGC 57.857 34.615 0.00 0.00 35.48 4.09
1819 3245 2.169832 TCGAGGAAAACAAGAGCTGG 57.830 50.000 0.00 0.00 0.00 4.85
1838 3264 4.278419 GCTGGTACAAAGGAATGACAACTT 59.722 41.667 0.00 0.00 38.70 2.66
1857 3283 7.976826 ACAACTTATCACAAAACGACTTGTAA 58.023 30.769 6.57 0.00 37.43 2.41
1890 3316 3.226777 ACCCCGAAAATCACATTTGTCA 58.773 40.909 0.00 0.00 31.77 3.58
1908 3334 6.721571 TTGTCATCTTCCTTCGATTGTTAC 57.278 37.500 0.00 0.00 0.00 2.50
1938 3385 5.376625 ACCAGAGCATGAAACTTACTGAAA 58.623 37.500 0.00 0.00 0.00 2.69
1942 3389 6.361748 CAGAGCATGAAACTTACTGAAAAAGC 59.638 38.462 0.00 0.00 0.00 3.51
1960 3407 1.351350 AGCAGTAAGGGAAAGGGACAC 59.649 52.381 0.00 0.00 0.00 3.67
1975 3422 0.685097 GACACCTGCTACACTCCCAA 59.315 55.000 0.00 0.00 0.00 4.12
1985 3432 4.225042 TGCTACACTCCCAACATACAAGAT 59.775 41.667 0.00 0.00 0.00 2.40
1993 3440 6.209391 ACTCCCAACATACAAGATTTTGAAGG 59.791 38.462 2.48 0.00 37.73 3.46
2021 3468 0.999406 CCACTCACTGCGAATAACGG 59.001 55.000 0.00 0.00 42.83 4.44
2070 3517 1.832167 GGACAAGCACCCCAAGCAA 60.832 57.895 0.00 0.00 0.00 3.91
2106 3553 3.700538 TCTTCACCATCAATCCAAAGGG 58.299 45.455 0.00 0.00 0.00 3.95
2107 3554 3.075882 TCTTCACCATCAATCCAAAGGGT 59.924 43.478 0.00 0.00 34.93 4.34
2108 3555 3.541242 TCACCATCAATCCAAAGGGTT 57.459 42.857 0.00 0.00 34.93 4.11
2109 3556 3.164268 TCACCATCAATCCAAAGGGTTG 58.836 45.455 2.61 2.61 34.93 3.77
2122 3569 4.167597 GGTTGGACCCTCGCAAAA 57.832 55.556 0.00 0.00 30.04 2.44
2123 3570 2.421220 GGTTGGACCCTCGCAAAAA 58.579 52.632 0.00 0.00 30.04 1.94
2178 3625 4.411327 TGTCGCTGAACAAAACAAAAGAG 58.589 39.130 0.00 0.00 0.00 2.85
2184 3631 6.035975 CGCTGAACAAAACAAAAGAGGAATTT 59.964 34.615 0.00 0.00 0.00 1.82
2211 3658 0.245539 CAGCACCAAAATCCAGCCAG 59.754 55.000 0.00 0.00 0.00 4.85
2297 3744 1.153756 CCCTCACTTGCCCTTTGGT 59.846 57.895 0.00 0.00 0.00 3.67
2316 3886 1.029408 TGGGGGCGAATCAAACATCG 61.029 55.000 0.00 0.00 41.81 3.84
2360 3930 3.412386 AGACTTTAGTCCAACATGCCAC 58.588 45.455 6.28 0.00 45.85 5.01
2413 3990 6.693113 GCAGGAACAAAGTTTAAGAGAAACAG 59.307 38.462 3.26 0.00 32.81 3.16
2426 4003 3.149196 GAGAAACAGGAGGACATGCAAA 58.851 45.455 0.00 0.00 0.00 3.68
2472 4050 4.229718 ACCCACTCCCCTAGCTATTAAT 57.770 45.455 0.00 0.00 0.00 1.40
2482 4060 2.175878 AGCTATTAATGAGGCTGCCG 57.824 50.000 13.96 0.00 33.50 5.69
2498 4076 2.625314 CTGCCGGACATGAGATAAGAGA 59.375 50.000 5.05 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.233789 CGTTTTCCCACATTAATGGTGTG 58.766 43.478 19.37 10.17 44.99 3.82
1 2 3.892588 ACGTTTTCCCACATTAATGGTGT 59.107 39.130 19.37 0.00 38.16 4.16
2 3 4.513198 ACGTTTTCCCACATTAATGGTG 57.487 40.909 19.37 13.81 38.16 4.17
3 4 5.538849 AAACGTTTTCCCACATTAATGGT 57.461 34.783 19.37 2.87 38.16 3.55
4 5 5.575218 GCTAAACGTTTTCCCACATTAATGG 59.425 40.000 20.19 4.25 39.71 3.16
5 6 6.386654 AGCTAAACGTTTTCCCACATTAATG 58.613 36.000 20.19 14.01 0.00 1.90
6 7 6.349860 GGAGCTAAACGTTTTCCCACATTAAT 60.350 38.462 20.19 0.00 0.00 1.40
7 8 5.048573 GGAGCTAAACGTTTTCCCACATTAA 60.049 40.000 20.19 0.00 0.00 1.40
8 9 4.456566 GGAGCTAAACGTTTTCCCACATTA 59.543 41.667 20.19 0.00 0.00 1.90
9 10 3.254903 GGAGCTAAACGTTTTCCCACATT 59.745 43.478 20.19 0.00 0.00 2.71
10 11 2.817844 GGAGCTAAACGTTTTCCCACAT 59.182 45.455 20.19 0.00 0.00 3.21
11 12 2.158726 AGGAGCTAAACGTTTTCCCACA 60.159 45.455 20.19 0.00 0.00 4.17
12 13 2.483106 GAGGAGCTAAACGTTTTCCCAC 59.517 50.000 20.19 12.66 0.00 4.61
13 14 2.370849 AGAGGAGCTAAACGTTTTCCCA 59.629 45.455 20.19 0.00 0.00 4.37
14 15 2.742589 CAGAGGAGCTAAACGTTTTCCC 59.257 50.000 20.19 14.28 0.00 3.97
15 16 3.400255 ACAGAGGAGCTAAACGTTTTCC 58.600 45.455 20.19 19.20 0.00 3.13
16 17 6.535274 TTTACAGAGGAGCTAAACGTTTTC 57.465 37.500 20.19 10.67 0.00 2.29
17 18 6.510638 CGTTTTACAGAGGAGCTAAACGTTTT 60.511 38.462 20.19 0.19 41.43 2.43
18 19 5.050567 CGTTTTACAGAGGAGCTAAACGTTT 60.051 40.000 18.90 18.90 41.43 3.60
19 20 4.446719 CGTTTTACAGAGGAGCTAAACGTT 59.553 41.667 15.30 0.00 41.43 3.99
20 21 3.985925 CGTTTTACAGAGGAGCTAAACGT 59.014 43.478 15.30 0.78 41.43 3.99
21 22 3.181533 GCGTTTTACAGAGGAGCTAAACG 60.182 47.826 17.96 17.96 46.07 3.60
22 23 3.744426 TGCGTTTTACAGAGGAGCTAAAC 59.256 43.478 0.00 0.00 0.00 2.01
23 24 3.744426 GTGCGTTTTACAGAGGAGCTAAA 59.256 43.478 0.00 0.00 0.00 1.85
24 25 3.243941 TGTGCGTTTTACAGAGGAGCTAA 60.244 43.478 0.00 0.00 0.00 3.09
25 26 2.297880 TGTGCGTTTTACAGAGGAGCTA 59.702 45.455 0.00 0.00 0.00 3.32
26 27 1.070134 TGTGCGTTTTACAGAGGAGCT 59.930 47.619 0.00 0.00 0.00 4.09
27 28 1.194772 GTGTGCGTTTTACAGAGGAGC 59.805 52.381 0.00 0.00 0.00 4.70
28 29 2.221055 GTGTGTGCGTTTTACAGAGGAG 59.779 50.000 0.00 0.00 0.00 3.69
29 30 2.206750 GTGTGTGCGTTTTACAGAGGA 58.793 47.619 0.00 0.00 0.00 3.71
30 31 1.070843 CGTGTGTGCGTTTTACAGAGG 60.071 52.381 0.00 0.00 0.00 3.69
31 32 1.656429 GCGTGTGTGCGTTTTACAGAG 60.656 52.381 0.00 0.00 0.00 3.35
32 33 0.302288 GCGTGTGTGCGTTTTACAGA 59.698 50.000 0.00 0.00 0.00 3.41
33 34 0.026933 TGCGTGTGTGCGTTTTACAG 59.973 50.000 0.00 0.00 37.81 2.74
34 35 0.658368 ATGCGTGTGTGCGTTTTACA 59.342 45.000 0.00 0.00 37.81 2.41
35 36 1.041726 CATGCGTGTGTGCGTTTTAC 58.958 50.000 0.00 0.00 37.81 2.01
36 37 0.658829 GCATGCGTGTGTGCGTTTTA 60.659 50.000 0.00 0.00 37.81 1.52
37 38 1.943693 GCATGCGTGTGTGCGTTTT 60.944 52.632 0.00 0.00 37.81 2.43
38 39 2.353376 GCATGCGTGTGTGCGTTT 60.353 55.556 0.00 0.00 37.81 3.60
39 40 2.906939 ATGCATGCGTGTGTGCGTT 61.907 52.632 12.68 0.00 44.11 4.84
40 41 3.356267 ATGCATGCGTGTGTGCGT 61.356 55.556 12.68 0.00 44.11 5.24
41 42 2.238071 TACATGCATGCGTGTGTGCG 62.238 55.000 42.08 20.50 44.79 5.34
42 43 0.109827 TTACATGCATGCGTGTGTGC 60.110 50.000 42.08 9.77 44.79 4.57
43 44 1.466192 CCTTACATGCATGCGTGTGTG 60.466 52.381 42.08 33.50 44.79 3.82
44 45 0.804364 CCTTACATGCATGCGTGTGT 59.196 50.000 42.08 31.57 44.79 3.72
45 46 0.099259 CCCTTACATGCATGCGTGTG 59.901 55.000 42.08 30.47 44.79 3.82
46 47 1.656818 GCCCTTACATGCATGCGTGT 61.657 55.000 39.17 39.17 46.53 4.49
47 48 1.064621 GCCCTTACATGCATGCGTG 59.935 57.895 33.18 33.18 38.78 5.34
48 49 0.752743 ATGCCCTTACATGCATGCGT 60.753 50.000 26.53 10.53 45.96 5.24
49 50 2.035421 ATGCCCTTACATGCATGCG 58.965 52.632 26.53 14.49 45.96 4.73
56 57 8.710749 ATCAATTATTGTACATGCCCTTACAT 57.289 30.769 4.77 0.00 0.00 2.29
57 58 9.634021 TTATCAATTATTGTACATGCCCTTACA 57.366 29.630 4.77 0.00 0.00 2.41
60 61 8.995027 TCTTATCAATTATTGTACATGCCCTT 57.005 30.769 4.77 0.00 0.00 3.95
63 64 9.994432 GCTATCTTATCAATTATTGTACATGCC 57.006 33.333 4.77 0.00 0.00 4.40
99 100 9.851686 TGTCACCTCTAAATTATATGCAAGATT 57.148 29.630 0.00 0.00 0.00 2.40
100 101 9.499479 CTGTCACCTCTAAATTATATGCAAGAT 57.501 33.333 0.00 0.00 0.00 2.40
101 102 8.704668 TCTGTCACCTCTAAATTATATGCAAGA 58.295 33.333 0.00 0.00 0.00 3.02
102 103 8.893219 TCTGTCACCTCTAAATTATATGCAAG 57.107 34.615 0.00 0.00 0.00 4.01
103 104 9.679661 TTTCTGTCACCTCTAAATTATATGCAA 57.320 29.630 0.00 0.00 0.00 4.08
104 105 9.679661 TTTTCTGTCACCTCTAAATTATATGCA 57.320 29.630 0.00 0.00 0.00 3.96
133 134 9.338968 AGGCTAAGAGATGACCCATTATAAATA 57.661 33.333 0.00 0.00 0.00 1.40
134 135 8.224620 AGGCTAAGAGATGACCCATTATAAAT 57.775 34.615 0.00 0.00 0.00 1.40
135 136 7.633018 AGGCTAAGAGATGACCCATTATAAA 57.367 36.000 0.00 0.00 0.00 1.40
136 137 7.633018 AAGGCTAAGAGATGACCCATTATAA 57.367 36.000 0.00 0.00 0.00 0.98
137 138 8.917414 ATAAGGCTAAGAGATGACCCATTATA 57.083 34.615 0.00 0.00 0.00 0.98
138 139 7.682028 AGATAAGGCTAAGAGATGACCCATTAT 59.318 37.037 0.00 0.00 0.00 1.28
139 140 7.019388 AGATAAGGCTAAGAGATGACCCATTA 58.981 38.462 0.00 0.00 0.00 1.90
140 141 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
141 142 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
142 143 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
143 144 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
144 145 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
145 146 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
147 148 9.995003 ACTTATTGAAGATAAGGCTAAGAGATG 57.005 33.333 9.76 0.00 36.26 2.90
156 157 9.438228 GGGATAACTACTTATTGAAGATAAGGC 57.562 37.037 9.76 0.00 36.26 4.35
163 164 9.769093 CGTTTTTGGGATAACTACTTATTGAAG 57.231 33.333 0.00 0.00 38.76 3.02
164 165 9.287373 ACGTTTTTGGGATAACTACTTATTGAA 57.713 29.630 0.00 0.00 0.00 2.69
165 166 8.723311 CACGTTTTTGGGATAACTACTTATTGA 58.277 33.333 0.00 0.00 0.00 2.57
166 167 7.966204 CCACGTTTTTGGGATAACTACTTATTG 59.034 37.037 0.00 0.00 32.35 1.90
167 168 7.666804 ACCACGTTTTTGGGATAACTACTTATT 59.333 33.333 0.00 0.00 41.49 1.40
168 169 7.120138 CACCACGTTTTTGGGATAACTACTTAT 59.880 37.037 0.00 0.00 41.49 1.73
169 170 6.427547 CACCACGTTTTTGGGATAACTACTTA 59.572 38.462 0.00 0.00 41.49 2.24
170 171 5.239963 CACCACGTTTTTGGGATAACTACTT 59.760 40.000 0.00 0.00 41.49 2.24
171 172 4.758165 CACCACGTTTTTGGGATAACTACT 59.242 41.667 0.00 0.00 41.49 2.57
172 173 4.756135 TCACCACGTTTTTGGGATAACTAC 59.244 41.667 0.00 0.00 41.49 2.73
173 174 4.970711 TCACCACGTTTTTGGGATAACTA 58.029 39.130 0.00 0.00 41.49 2.24
174 175 3.818773 CTCACCACGTTTTTGGGATAACT 59.181 43.478 0.00 0.00 41.49 2.24
175 176 3.816523 TCTCACCACGTTTTTGGGATAAC 59.183 43.478 0.00 0.00 41.49 1.89
176 177 3.816523 GTCTCACCACGTTTTTGGGATAA 59.183 43.478 0.00 0.00 41.49 1.75
177 178 3.181453 TGTCTCACCACGTTTTTGGGATA 60.181 43.478 0.00 0.00 41.49 2.59
178 179 2.227194 GTCTCACCACGTTTTTGGGAT 58.773 47.619 0.00 0.00 41.49 3.85
179 180 1.065345 TGTCTCACCACGTTTTTGGGA 60.065 47.619 0.00 0.00 41.49 4.37
180 181 1.384525 TGTCTCACCACGTTTTTGGG 58.615 50.000 0.00 0.00 41.49 4.12
181 182 5.153513 CAATATGTCTCACCACGTTTTTGG 58.846 41.667 0.00 0.00 43.04 3.28
182 183 5.624900 CACAATATGTCTCACCACGTTTTTG 59.375 40.000 0.00 0.00 0.00 2.44
183 184 5.757886 CACAATATGTCTCACCACGTTTTT 58.242 37.500 0.00 0.00 0.00 1.94
184 185 4.320202 GCACAATATGTCTCACCACGTTTT 60.320 41.667 0.00 0.00 0.00 2.43
185 186 3.188460 GCACAATATGTCTCACCACGTTT 59.812 43.478 0.00 0.00 0.00 3.60
186 187 2.742053 GCACAATATGTCTCACCACGTT 59.258 45.455 0.00 0.00 0.00 3.99
187 188 2.028112 AGCACAATATGTCTCACCACGT 60.028 45.455 0.00 0.00 0.00 4.49
188 189 2.621338 AGCACAATATGTCTCACCACG 58.379 47.619 0.00 0.00 0.00 4.94
189 190 4.024556 GCATAGCACAATATGTCTCACCAC 60.025 45.833 0.00 0.00 35.87 4.16
190 191 4.129380 GCATAGCACAATATGTCTCACCA 58.871 43.478 0.00 0.00 35.87 4.17
191 192 4.384056 AGCATAGCACAATATGTCTCACC 58.616 43.478 0.00 0.00 35.87 4.02
192 193 6.925718 TCTTAGCATAGCACAATATGTCTCAC 59.074 38.462 0.00 0.00 35.87 3.51
193 194 7.014615 TCTCTTAGCATAGCACAATATGTCTCA 59.985 37.037 0.00 0.00 35.87 3.27
194 195 7.328249 GTCTCTTAGCATAGCACAATATGTCTC 59.672 40.741 0.00 0.00 35.87 3.36
195 196 7.151308 GTCTCTTAGCATAGCACAATATGTCT 58.849 38.462 0.00 0.00 35.87 3.41
196 197 6.367422 GGTCTCTTAGCATAGCACAATATGTC 59.633 42.308 0.00 0.00 35.87 3.06
197 198 6.183361 TGGTCTCTTAGCATAGCACAATATGT 60.183 38.462 0.00 0.00 35.87 2.29
198 199 6.226052 TGGTCTCTTAGCATAGCACAATATG 58.774 40.000 0.00 0.00 36.43 1.78
199 200 6.425210 TGGTCTCTTAGCATAGCACAATAT 57.575 37.500 0.00 0.00 0.00 1.28
200 201 5.869649 TGGTCTCTTAGCATAGCACAATA 57.130 39.130 0.00 0.00 0.00 1.90
201 202 4.760530 TGGTCTCTTAGCATAGCACAAT 57.239 40.909 0.00 0.00 0.00 2.71
202 203 4.406972 AGATGGTCTCTTAGCATAGCACAA 59.593 41.667 0.00 0.00 46.22 3.33
203 204 3.963374 AGATGGTCTCTTAGCATAGCACA 59.037 43.478 0.00 0.00 46.22 4.57
204 205 4.599047 AGATGGTCTCTTAGCATAGCAC 57.401 45.455 0.00 0.00 46.22 4.40
205 206 5.620738 AAAGATGGTCTCTTAGCATAGCA 57.379 39.130 0.00 0.00 46.22 3.49
206 207 5.819901 ACAAAAGATGGTCTCTTAGCATAGC 59.180 40.000 0.00 0.00 46.22 2.97
207 208 9.553064 AATACAAAAGATGGTCTCTTAGCATAG 57.447 33.333 0.00 0.00 46.22 2.23
208 209 9.547753 GAATACAAAAGATGGTCTCTTAGCATA 57.452 33.333 0.00 0.00 46.22 3.14
210 211 7.550551 CAGAATACAAAAGATGGTCTCTTAGCA 59.449 37.037 0.00 0.00 43.60 3.49
211 212 7.550906 ACAGAATACAAAAGATGGTCTCTTAGC 59.449 37.037 0.00 0.00 43.60 3.09
212 213 9.442047 AACAGAATACAAAAGATGGTCTCTTAG 57.558 33.333 0.00 0.00 43.60 2.18
214 215 9.793259 TTAACAGAATACAAAAGATGGTCTCTT 57.207 29.630 0.00 0.00 46.44 2.85
215 216 9.793259 TTTAACAGAATACAAAAGATGGTCTCT 57.207 29.630 0.00 0.00 34.96 3.10
260 261 9.442047 GAGTGGAGAAGAGAGAATTCATAAAAA 57.558 33.333 8.44 0.00 0.00 1.94
261 262 8.597167 TGAGTGGAGAAGAGAGAATTCATAAAA 58.403 33.333 8.44 0.00 0.00 1.52
262 263 8.037758 GTGAGTGGAGAAGAGAGAATTCATAAA 58.962 37.037 8.44 0.00 0.00 1.40
263 264 7.364232 GGTGAGTGGAGAAGAGAGAATTCATAA 60.364 40.741 8.44 0.00 0.00 1.90
264 265 6.097554 GGTGAGTGGAGAAGAGAGAATTCATA 59.902 42.308 8.44 0.00 0.00 2.15
265 266 5.104982 GGTGAGTGGAGAAGAGAGAATTCAT 60.105 44.000 8.44 0.00 0.00 2.57
266 267 4.221703 GGTGAGTGGAGAAGAGAGAATTCA 59.778 45.833 8.44 0.00 0.00 2.57
267 268 4.221703 TGGTGAGTGGAGAAGAGAGAATTC 59.778 45.833 0.00 0.00 0.00 2.17
268 269 4.163427 TGGTGAGTGGAGAAGAGAGAATT 58.837 43.478 0.00 0.00 0.00 2.17
269 270 3.784178 TGGTGAGTGGAGAAGAGAGAAT 58.216 45.455 0.00 0.00 0.00 2.40
270 271 3.244887 TGGTGAGTGGAGAAGAGAGAA 57.755 47.619 0.00 0.00 0.00 2.87
271 272 2.980246 TGGTGAGTGGAGAAGAGAGA 57.020 50.000 0.00 0.00 0.00 3.10
272 273 4.550076 AAATGGTGAGTGGAGAAGAGAG 57.450 45.455 0.00 0.00 0.00 3.20
273 274 5.129485 GGATAAATGGTGAGTGGAGAAGAGA 59.871 44.000 0.00 0.00 0.00 3.10
274 275 5.130145 AGGATAAATGGTGAGTGGAGAAGAG 59.870 44.000 0.00 0.00 0.00 2.85
275 276 5.032846 AGGATAAATGGTGAGTGGAGAAGA 58.967 41.667 0.00 0.00 0.00 2.87
276 277 5.365021 AGGATAAATGGTGAGTGGAGAAG 57.635 43.478 0.00 0.00 0.00 2.85
277 278 5.724370 TGTAGGATAAATGGTGAGTGGAGAA 59.276 40.000 0.00 0.00 0.00 2.87
278 279 5.277250 TGTAGGATAAATGGTGAGTGGAGA 58.723 41.667 0.00 0.00 0.00 3.71
279 280 5.614324 TGTAGGATAAATGGTGAGTGGAG 57.386 43.478 0.00 0.00 0.00 3.86
280 281 5.665360 TCATGTAGGATAAATGGTGAGTGGA 59.335 40.000 0.00 0.00 36.91 4.02
281 282 5.760253 GTCATGTAGGATAAATGGTGAGTGG 59.240 44.000 0.00 0.00 36.91 4.00
282 283 6.258727 GTGTCATGTAGGATAAATGGTGAGTG 59.741 42.308 0.00 0.00 36.91 3.51
283 284 6.156949 AGTGTCATGTAGGATAAATGGTGAGT 59.843 38.462 0.00 0.00 36.91 3.41
284 285 6.586344 AGTGTCATGTAGGATAAATGGTGAG 58.414 40.000 0.00 0.00 36.91 3.51
285 286 6.560003 AGTGTCATGTAGGATAAATGGTGA 57.440 37.500 0.00 0.00 36.91 4.02
286 287 6.260936 GGAAGTGTCATGTAGGATAAATGGTG 59.739 42.308 0.00 0.00 36.91 4.17
287 288 6.357367 GGAAGTGTCATGTAGGATAAATGGT 58.643 40.000 0.00 0.00 36.91 3.55
288 289 5.466728 CGGAAGTGTCATGTAGGATAAATGG 59.533 44.000 0.00 0.00 36.91 3.16
289 290 5.466728 CCGGAAGTGTCATGTAGGATAAATG 59.533 44.000 0.00 0.00 37.65 2.32
290 291 5.130477 ACCGGAAGTGTCATGTAGGATAAAT 59.870 40.000 9.46 0.00 0.00 1.40
291 292 4.468510 ACCGGAAGTGTCATGTAGGATAAA 59.531 41.667 9.46 0.00 0.00 1.40
292 293 4.028131 ACCGGAAGTGTCATGTAGGATAA 58.972 43.478 9.46 0.00 0.00 1.75
293 294 3.383505 CACCGGAAGTGTCATGTAGGATA 59.616 47.826 9.46 0.00 41.93 2.59
294 295 2.168521 CACCGGAAGTGTCATGTAGGAT 59.831 50.000 9.46 0.00 41.93 3.24
295 296 1.548719 CACCGGAAGTGTCATGTAGGA 59.451 52.381 9.46 0.00 41.93 2.94
296 297 2.010145 CACCGGAAGTGTCATGTAGG 57.990 55.000 9.46 0.00 41.93 3.18
306 307 2.959707 CTCCTAAGATAGCACCGGAAGT 59.040 50.000 9.46 0.00 0.00 3.01
307 308 2.959707 ACTCCTAAGATAGCACCGGAAG 59.040 50.000 9.46 0.15 0.00 3.46
308 309 2.693591 CACTCCTAAGATAGCACCGGAA 59.306 50.000 9.46 0.00 0.00 4.30
309 310 2.307768 CACTCCTAAGATAGCACCGGA 58.692 52.381 9.46 0.00 0.00 5.14
310 311 2.032620 ACACTCCTAAGATAGCACCGG 58.967 52.381 0.00 0.00 0.00 5.28
311 312 2.688446 TGACACTCCTAAGATAGCACCG 59.312 50.000 0.00 0.00 0.00 4.94
312 313 3.489398 CGTGACACTCCTAAGATAGCACC 60.489 52.174 3.68 0.00 0.00 5.01
313 314 3.696898 CGTGACACTCCTAAGATAGCAC 58.303 50.000 3.68 0.00 0.00 4.40
314 315 2.099263 GCGTGACACTCCTAAGATAGCA 59.901 50.000 3.68 0.00 0.00 3.49
315 316 2.099263 TGCGTGACACTCCTAAGATAGC 59.901 50.000 3.68 0.00 0.00 2.97
316 317 3.243234 CCTGCGTGACACTCCTAAGATAG 60.243 52.174 3.68 0.00 0.00 2.08
317 318 2.688446 CCTGCGTGACACTCCTAAGATA 59.312 50.000 3.68 0.00 0.00 1.98
318 319 1.478510 CCTGCGTGACACTCCTAAGAT 59.521 52.381 3.68 0.00 0.00 2.40
319 320 0.888619 CCTGCGTGACACTCCTAAGA 59.111 55.000 3.68 0.00 0.00 2.10
320 321 0.603569 ACCTGCGTGACACTCCTAAG 59.396 55.000 3.68 0.00 0.00 2.18
321 322 1.913778 TACCTGCGTGACACTCCTAA 58.086 50.000 3.68 0.00 0.00 2.69
322 323 2.139323 ATACCTGCGTGACACTCCTA 57.861 50.000 3.68 0.00 0.00 2.94
323 324 2.139323 TATACCTGCGTGACACTCCT 57.861 50.000 3.68 0.00 0.00 3.69
324 325 3.068307 AGAATATACCTGCGTGACACTCC 59.932 47.826 3.68 0.00 0.00 3.85
325 326 4.308899 AGAATATACCTGCGTGACACTC 57.691 45.455 3.68 0.00 0.00 3.51
326 327 4.402793 AGAAGAATATACCTGCGTGACACT 59.597 41.667 3.68 0.00 0.00 3.55
327 328 4.683832 AGAAGAATATACCTGCGTGACAC 58.316 43.478 0.00 0.00 0.00 3.67
328 329 4.401202 TGAGAAGAATATACCTGCGTGACA 59.599 41.667 0.00 0.00 0.00 3.58
329 330 4.933330 TGAGAAGAATATACCTGCGTGAC 58.067 43.478 0.00 0.00 0.00 3.67
330 331 5.592104 TTGAGAAGAATATACCTGCGTGA 57.408 39.130 0.00 0.00 0.00 4.35
331 332 6.090088 GCTATTGAGAAGAATATACCTGCGTG 59.910 42.308 0.00 0.00 0.00 5.34
332 333 6.159988 GCTATTGAGAAGAATATACCTGCGT 58.840 40.000 0.00 0.00 0.00 5.24
333 334 6.159293 TGCTATTGAGAAGAATATACCTGCG 58.841 40.000 0.00 0.00 0.00 5.18
334 335 8.040132 AGATGCTATTGAGAAGAATATACCTGC 58.960 37.037 0.00 0.00 0.00 4.85
335 336 9.941325 AAGATGCTATTGAGAAGAATATACCTG 57.059 33.333 0.00 0.00 0.00 4.00
344 345 9.601217 GGTAAAACTAAGATGCTATTGAGAAGA 57.399 33.333 0.00 0.00 0.00 2.87
345 346 9.383519 TGGTAAAACTAAGATGCTATTGAGAAG 57.616 33.333 0.00 0.00 0.00 2.85
346 347 9.733556 TTGGTAAAACTAAGATGCTATTGAGAA 57.266 29.630 0.00 0.00 0.00 2.87
347 348 9.733556 TTTGGTAAAACTAAGATGCTATTGAGA 57.266 29.630 0.00 0.00 0.00 3.27
364 365 4.877251 AGTGTCGCTACTGTTTTGGTAAAA 59.123 37.500 0.00 0.00 0.00 1.52
369 371 2.949714 CAGTGTCGCTACTGTTTTGG 57.050 50.000 9.79 0.00 42.38 3.28
406 408 8.081633 CACTTTTGTAGCATATGTGAGGAAAAA 58.918 33.333 4.29 4.35 0.00 1.94
411 413 5.220472 CGTCACTTTTGTAGCATATGTGAGG 60.220 44.000 4.29 9.51 33.22 3.86
413 415 4.092821 GCGTCACTTTTGTAGCATATGTGA 59.907 41.667 4.29 0.00 31.37 3.58
414 416 4.334443 GCGTCACTTTTGTAGCATATGTG 58.666 43.478 4.29 0.00 0.00 3.21
415 417 3.374058 GGCGTCACTTTTGTAGCATATGT 59.626 43.478 4.29 0.00 0.00 2.29
416 418 3.373748 TGGCGTCACTTTTGTAGCATATG 59.626 43.478 0.00 0.00 0.00 1.78
426 467 0.179004 TGGACCATGGCGTCACTTTT 60.179 50.000 13.04 0.00 34.24 2.27
450 491 3.684788 AGCCATCGAACAACAACACTATC 59.315 43.478 0.00 0.00 0.00 2.08
455 496 3.252215 CCTAAAGCCATCGAACAACAACA 59.748 43.478 0.00 0.00 0.00 3.33
456 497 3.365969 CCCTAAAGCCATCGAACAACAAC 60.366 47.826 0.00 0.00 0.00 3.32
457 498 2.817258 CCCTAAAGCCATCGAACAACAA 59.183 45.455 0.00 0.00 0.00 2.83
476 517 9.539825 CTGTCTTATCTATCATTGTATATGCCC 57.460 37.037 0.00 0.00 0.00 5.36
477 518 9.039870 GCTGTCTTATCTATCATTGTATATGCC 57.960 37.037 0.00 0.00 0.00 4.40
478 519 9.039870 GGCTGTCTTATCTATCATTGTATATGC 57.960 37.037 0.00 0.00 0.00 3.14
483 524 9.368416 AGTAAGGCTGTCTTATCTATCATTGTA 57.632 33.333 4.87 0.00 39.82 2.41
484 525 8.256356 AGTAAGGCTGTCTTATCTATCATTGT 57.744 34.615 4.87 0.00 39.82 2.71
485 526 9.553064 AAAGTAAGGCTGTCTTATCTATCATTG 57.447 33.333 4.87 0.00 39.82 2.82
494 535 8.678199 GCAAGATTTAAAGTAAGGCTGTCTTAT 58.322 33.333 4.87 0.00 39.82 1.73
495 536 7.663905 TGCAAGATTTAAAGTAAGGCTGTCTTA 59.336 33.333 0.00 0.00 36.93 2.10
496 537 6.490040 TGCAAGATTTAAAGTAAGGCTGTCTT 59.510 34.615 0.00 0.00 39.40 3.01
497 538 6.003950 TGCAAGATTTAAAGTAAGGCTGTCT 58.996 36.000 0.00 0.00 0.00 3.41
498 539 6.254281 TGCAAGATTTAAAGTAAGGCTGTC 57.746 37.500 0.00 0.00 0.00 3.51
499 540 6.840780 ATGCAAGATTTAAAGTAAGGCTGT 57.159 33.333 0.00 0.00 0.00 4.40
500 541 7.315142 TGAATGCAAGATTTAAAGTAAGGCTG 58.685 34.615 0.00 0.00 0.00 4.85
501 542 7.466746 TGAATGCAAGATTTAAAGTAAGGCT 57.533 32.000 0.00 0.00 0.00 4.58
502 543 8.707938 ATTGAATGCAAGATTTAAAGTAAGGC 57.292 30.769 0.00 0.00 37.45 4.35
584 625 9.948964 ACCGTGTTTTTAGGAATAACTAGTTAT 57.051 29.630 20.27 20.27 37.36 1.89
586 627 9.777297 TTACCGTGTTTTTAGGAATAACTAGTT 57.223 29.630 13.68 13.68 0.00 2.24
587 628 9.428097 CTTACCGTGTTTTTAGGAATAACTAGT 57.572 33.333 0.00 0.00 0.00 2.57
588 629 9.643693 TCTTACCGTGTTTTTAGGAATAACTAG 57.356 33.333 0.00 0.00 0.00 2.57
589 630 9.423061 GTCTTACCGTGTTTTTAGGAATAACTA 57.577 33.333 0.00 0.00 0.00 2.24
590 631 7.933033 TGTCTTACCGTGTTTTTAGGAATAACT 59.067 33.333 0.00 0.00 0.00 2.24
591 632 8.086851 TGTCTTACCGTGTTTTTAGGAATAAC 57.913 34.615 0.00 0.00 0.00 1.89
592 633 8.851541 ATGTCTTACCGTGTTTTTAGGAATAA 57.148 30.769 0.00 0.00 0.00 1.40
594 635 9.457436 AATATGTCTTACCGTGTTTTTAGGAAT 57.543 29.630 0.00 0.00 0.00 3.01
595 636 8.851541 AATATGTCTTACCGTGTTTTTAGGAA 57.148 30.769 0.00 0.00 0.00 3.36
598 639 9.646336 GCATAATATGTCTTACCGTGTTTTTAG 57.354 33.333 1.92 0.00 0.00 1.85
599 640 9.386010 AGCATAATATGTCTTACCGTGTTTTTA 57.614 29.630 1.92 0.00 0.00 1.52
600 641 8.276252 AGCATAATATGTCTTACCGTGTTTTT 57.724 30.769 1.92 0.00 0.00 1.94
601 642 7.859325 AGCATAATATGTCTTACCGTGTTTT 57.141 32.000 1.92 0.00 0.00 2.43
602 643 8.951787 TTAGCATAATATGTCTTACCGTGTTT 57.048 30.769 1.92 0.00 0.00 2.83
603 644 8.418662 TCTTAGCATAATATGTCTTACCGTGTT 58.581 33.333 1.92 0.00 0.00 3.32
604 645 7.948357 TCTTAGCATAATATGTCTTACCGTGT 58.052 34.615 1.92 0.00 0.00 4.49
605 646 8.297426 TCTCTTAGCATAATATGTCTTACCGTG 58.703 37.037 1.92 0.00 0.00 4.94
606 647 8.405418 TCTCTTAGCATAATATGTCTTACCGT 57.595 34.615 1.92 0.00 0.00 4.83
607 648 9.509855 GATCTCTTAGCATAATATGTCTTACCG 57.490 37.037 1.92 0.00 0.00 4.02
642 683 9.578439 GCAAGAAAATGCTTGTCTTATCTTATT 57.422 29.630 3.18 0.00 45.41 1.40
643 684 7.912250 CGCAAGAAAATGCTTGTCTTATCTTAT 59.088 33.333 3.18 0.00 45.41 1.73
644 685 7.243487 CGCAAGAAAATGCTTGTCTTATCTTA 58.757 34.615 3.18 0.00 45.41 2.10
645 686 6.088824 CGCAAGAAAATGCTTGTCTTATCTT 58.911 36.000 3.18 0.00 45.41 2.40
646 687 5.392380 CCGCAAGAAAATGCTTGTCTTATCT 60.392 40.000 3.18 0.00 45.41 1.98
647 688 4.795278 CCGCAAGAAAATGCTTGTCTTATC 59.205 41.667 3.18 0.00 45.41 1.75
648 689 4.218417 ACCGCAAGAAAATGCTTGTCTTAT 59.782 37.500 3.18 0.00 45.41 1.73
649 690 3.568007 ACCGCAAGAAAATGCTTGTCTTA 59.432 39.130 3.18 0.00 45.41 2.10
650 691 2.362077 ACCGCAAGAAAATGCTTGTCTT 59.638 40.909 3.18 0.00 45.41 3.01
651 692 1.956477 ACCGCAAGAAAATGCTTGTCT 59.044 42.857 3.18 0.00 45.41 3.41
652 693 2.422276 ACCGCAAGAAAATGCTTGTC 57.578 45.000 3.18 0.00 45.41 3.18
653 694 2.888834 AACCGCAAGAAAATGCTTGT 57.111 40.000 3.18 0.00 45.41 3.16
654 695 3.383761 AGAAACCGCAAGAAAATGCTTG 58.616 40.909 0.00 0.00 46.18 4.01
655 696 3.733443 AGAAACCGCAAGAAAATGCTT 57.267 38.095 0.00 0.00 44.21 3.91
656 697 3.733443 AAGAAACCGCAAGAAAATGCT 57.267 38.095 0.00 0.00 44.21 3.79
657 698 4.051237 AGAAAGAAACCGCAAGAAAATGC 58.949 39.130 0.00 0.00 42.94 3.56
658 699 4.681483 GGAGAAAGAAACCGCAAGAAAATG 59.319 41.667 0.00 0.00 43.02 2.32
659 700 4.584743 AGGAGAAAGAAACCGCAAGAAAAT 59.415 37.500 0.00 0.00 43.02 1.82
660 701 3.951680 AGGAGAAAGAAACCGCAAGAAAA 59.048 39.130 0.00 0.00 43.02 2.29
661 702 3.551846 AGGAGAAAGAAACCGCAAGAAA 58.448 40.909 0.00 0.00 43.02 2.52
662 703 3.139077 GAGGAGAAAGAAACCGCAAGAA 58.861 45.455 0.00 0.00 43.02 2.52
663 704 2.368875 AGAGGAGAAAGAAACCGCAAGA 59.631 45.455 0.00 0.00 43.02 3.02
664 705 2.772287 AGAGGAGAAAGAAACCGCAAG 58.228 47.619 0.00 0.00 0.00 4.01
665 706 2.930826 AGAGGAGAAAGAAACCGCAA 57.069 45.000 0.00 0.00 0.00 4.85
666 707 2.631062 TGTAGAGGAGAAAGAAACCGCA 59.369 45.455 0.00 0.00 0.00 5.69
667 708 3.314541 TGTAGAGGAGAAAGAAACCGC 57.685 47.619 0.00 0.00 0.00 5.68
668 709 5.073311 TGATGTAGAGGAGAAAGAAACCG 57.927 43.478 0.00 0.00 0.00 4.44
669 710 5.348997 CGTTGATGTAGAGGAGAAAGAAACC 59.651 44.000 0.00 0.00 0.00 3.27
670 711 5.927115 ACGTTGATGTAGAGGAGAAAGAAAC 59.073 40.000 0.00 0.00 0.00 2.78
671 712 6.097915 ACGTTGATGTAGAGGAGAAAGAAA 57.902 37.500 0.00 0.00 0.00 2.52
672 713 5.723672 ACGTTGATGTAGAGGAGAAAGAA 57.276 39.130 0.00 0.00 0.00 2.52
673 714 5.723672 AACGTTGATGTAGAGGAGAAAGA 57.276 39.130 0.00 0.00 0.00 2.52
674 715 7.464710 GCATAAACGTTGATGTAGAGGAGAAAG 60.465 40.741 23.62 0.00 0.00 2.62
675 716 6.312918 GCATAAACGTTGATGTAGAGGAGAAA 59.687 38.462 23.62 0.00 0.00 2.52
676 717 5.810587 GCATAAACGTTGATGTAGAGGAGAA 59.189 40.000 23.62 0.00 0.00 2.87
677 718 5.127194 AGCATAAACGTTGATGTAGAGGAGA 59.873 40.000 23.62 0.00 0.00 3.71
678 719 5.352284 AGCATAAACGTTGATGTAGAGGAG 58.648 41.667 23.62 0.00 0.00 3.69
679 720 5.339008 AGCATAAACGTTGATGTAGAGGA 57.661 39.130 23.62 0.00 0.00 3.71
680 721 6.757010 ACTTAGCATAAACGTTGATGTAGAGG 59.243 38.462 23.62 13.34 0.00 3.69
681 722 7.254117 CCACTTAGCATAAACGTTGATGTAGAG 60.254 40.741 23.62 19.37 0.00 2.43
682 723 6.533723 CCACTTAGCATAAACGTTGATGTAGA 59.466 38.462 23.62 9.22 0.00 2.59
683 724 6.705782 CCACTTAGCATAAACGTTGATGTAG 58.294 40.000 23.62 19.53 0.00 2.74
684 725 5.064198 GCCACTTAGCATAAACGTTGATGTA 59.936 40.000 23.62 13.42 0.00 2.29
685 726 4.142687 GCCACTTAGCATAAACGTTGATGT 60.143 41.667 23.62 14.27 0.00 3.06
686 727 4.142708 TGCCACTTAGCATAAACGTTGATG 60.143 41.667 19.74 19.74 38.00 3.07
687 728 4.006989 TGCCACTTAGCATAAACGTTGAT 58.993 39.130 0.00 0.00 38.00 2.57
688 729 3.187637 GTGCCACTTAGCATAAACGTTGA 59.812 43.478 0.00 0.00 46.24 3.18
689 730 3.188460 AGTGCCACTTAGCATAAACGTTG 59.812 43.478 0.00 0.00 46.24 4.10
690 731 3.408634 AGTGCCACTTAGCATAAACGTT 58.591 40.909 0.00 0.00 46.24 3.99
691 732 3.000727 GAGTGCCACTTAGCATAAACGT 58.999 45.455 0.00 0.00 46.24 3.99
692 733 2.351726 GGAGTGCCACTTAGCATAAACG 59.648 50.000 0.00 0.00 46.24 3.60
693 734 3.610911 AGGAGTGCCACTTAGCATAAAC 58.389 45.455 0.00 0.00 46.24 2.01
694 735 5.188948 TCTTAGGAGTGCCACTTAGCATAAA 59.811 40.000 0.00 0.00 46.24 1.40
695 736 4.714802 TCTTAGGAGTGCCACTTAGCATAA 59.285 41.667 0.00 0.00 46.24 1.90
696 737 4.286707 TCTTAGGAGTGCCACTTAGCATA 58.713 43.478 0.00 0.00 46.24 3.14
697 738 3.107601 TCTTAGGAGTGCCACTTAGCAT 58.892 45.455 0.00 0.00 46.24 3.79
698 739 2.536066 TCTTAGGAGTGCCACTTAGCA 58.464 47.619 0.00 0.00 41.46 3.49
699 740 3.828875 ATCTTAGGAGTGCCACTTAGC 57.171 47.619 0.00 0.00 36.29 3.09
700 741 4.342378 TGCTATCTTAGGAGTGCCACTTAG 59.658 45.833 0.00 0.00 36.29 2.18
701 742 4.099573 GTGCTATCTTAGGAGTGCCACTTA 59.900 45.833 0.00 0.00 36.29 2.24
702 743 3.107601 TGCTATCTTAGGAGTGCCACTT 58.892 45.455 0.00 0.00 36.29 3.16
703 744 2.432510 GTGCTATCTTAGGAGTGCCACT 59.567 50.000 0.00 0.00 36.29 4.00
704 745 2.799917 CGTGCTATCTTAGGAGTGCCAC 60.800 54.545 0.00 0.00 36.29 5.01
705 746 1.409064 CGTGCTATCTTAGGAGTGCCA 59.591 52.381 0.00 0.00 36.29 4.92
706 747 1.409427 ACGTGCTATCTTAGGAGTGCC 59.591 52.381 0.00 0.00 0.00 5.01
707 748 2.464865 CACGTGCTATCTTAGGAGTGC 58.535 52.381 0.82 0.00 0.00 4.40
708 749 2.159240 TGCACGTGCTATCTTAGGAGTG 60.159 50.000 37.59 0.00 42.66 3.51
709 750 2.100197 TGCACGTGCTATCTTAGGAGT 58.900 47.619 37.59 0.00 42.66 3.85
710 751 2.871182 TGCACGTGCTATCTTAGGAG 57.129 50.000 37.59 0.00 42.66 3.69
711 752 2.803133 GCATGCACGTGCTATCTTAGGA 60.803 50.000 37.59 17.38 41.82 2.94
712 753 1.528586 GCATGCACGTGCTATCTTAGG 59.471 52.381 37.59 21.02 41.82 2.69
713 754 1.528586 GGCATGCACGTGCTATCTTAG 59.471 52.381 37.59 20.53 44.45 2.18
714 755 1.581934 GGCATGCACGTGCTATCTTA 58.418 50.000 37.59 19.65 44.45 2.10
715 756 1.097547 GGGCATGCACGTGCTATCTT 61.098 55.000 37.59 16.66 44.45 2.40
716 757 1.524621 GGGCATGCACGTGCTATCT 60.525 57.895 37.59 18.89 44.45 1.98
717 758 1.097547 AAGGGCATGCACGTGCTATC 61.098 55.000 37.59 25.17 44.45 2.08
718 759 0.180171 TAAGGGCATGCACGTGCTAT 59.820 50.000 37.59 26.22 44.45 2.97
719 760 0.180171 ATAAGGGCATGCACGTGCTA 59.820 50.000 37.59 25.26 44.45 3.49
720 761 0.180171 TATAAGGGCATGCACGTGCT 59.820 50.000 37.59 22.19 44.45 4.40
721 762 1.021202 TTATAAGGGCATGCACGTGC 58.979 50.000 33.11 33.11 44.31 5.34
722 763 3.988379 AATTATAAGGGCATGCACGTG 57.012 42.857 19.23 12.28 0.00 4.49
723 764 4.024387 CGTTAATTATAAGGGCATGCACGT 60.024 41.667 21.36 17.76 0.00 4.49
724 765 4.212425 TCGTTAATTATAAGGGCATGCACG 59.788 41.667 21.36 15.45 0.00 5.34
725 766 5.682943 TCGTTAATTATAAGGGCATGCAC 57.317 39.130 21.36 17.78 0.00 4.57
726 767 6.000840 TCATCGTTAATTATAAGGGCATGCA 58.999 36.000 21.36 0.00 0.00 3.96
727 768 6.314784 GTCATCGTTAATTATAAGGGCATGC 58.685 40.000 9.90 9.90 0.00 4.06
728 769 6.429692 TGGTCATCGTTAATTATAAGGGCATG 59.570 38.462 0.00 0.00 0.00 4.06
729 770 6.539173 TGGTCATCGTTAATTATAAGGGCAT 58.461 36.000 0.00 0.00 0.00 4.40
730 771 5.931294 TGGTCATCGTTAATTATAAGGGCA 58.069 37.500 0.00 0.00 0.00 5.36
731 772 6.653320 TGATGGTCATCGTTAATTATAAGGGC 59.347 38.462 6.49 0.00 40.63 5.19
732 773 7.119262 GGTGATGGTCATCGTTAATTATAAGGG 59.881 40.741 6.49 0.00 40.63 3.95
733 774 7.659799 TGGTGATGGTCATCGTTAATTATAAGG 59.340 37.037 6.49 0.00 40.63 2.69
734 775 8.495949 GTGGTGATGGTCATCGTTAATTATAAG 58.504 37.037 6.49 0.00 40.63 1.73
761 802 1.827789 TGCAGGAAAAGGCAGCGTT 60.828 52.632 0.00 0.00 34.58 4.84
764 805 1.234615 TACGTGCAGGAAAAGGCAGC 61.235 55.000 14.38 0.00 41.35 5.25
856 898 9.771534 GGTAGTAGCAATTCTCATTAGATCTTT 57.228 33.333 0.00 0.00 0.00 2.52
857 899 8.928448 TGGTAGTAGCAATTCTCATTAGATCTT 58.072 33.333 0.00 0.00 0.00 2.40
858 900 8.484214 TGGTAGTAGCAATTCTCATTAGATCT 57.516 34.615 0.00 0.00 0.00 2.75
859 901 8.364142 ACTGGTAGTAGCAATTCTCATTAGATC 58.636 37.037 3.25 0.00 0.00 2.75
860 902 8.256356 ACTGGTAGTAGCAATTCTCATTAGAT 57.744 34.615 3.25 0.00 0.00 1.98
861 903 7.661536 ACTGGTAGTAGCAATTCTCATTAGA 57.338 36.000 3.25 0.00 0.00 2.10
862 904 7.225538 CCAACTGGTAGTAGCAATTCTCATTAG 59.774 40.741 3.25 0.00 0.00 1.73
863 905 7.047891 CCAACTGGTAGTAGCAATTCTCATTA 58.952 38.462 3.25 0.00 0.00 1.90
864 906 5.882557 CCAACTGGTAGTAGCAATTCTCATT 59.117 40.000 3.25 0.00 0.00 2.57
865 907 5.431765 CCAACTGGTAGTAGCAATTCTCAT 58.568 41.667 3.25 0.00 0.00 2.90
866 908 4.832248 CCAACTGGTAGTAGCAATTCTCA 58.168 43.478 3.25 0.00 0.00 3.27
867 909 3.623510 GCCAACTGGTAGTAGCAATTCTC 59.376 47.826 3.25 0.00 37.57 2.87
868 910 3.009033 TGCCAACTGGTAGTAGCAATTCT 59.991 43.478 3.25 0.00 35.51 2.40
869 911 3.127030 GTGCCAACTGGTAGTAGCAATTC 59.873 47.826 3.25 0.00 38.71 2.17
870 912 3.081804 GTGCCAACTGGTAGTAGCAATT 58.918 45.455 3.25 0.00 38.71 2.32
871 913 2.711542 GTGCCAACTGGTAGTAGCAAT 58.288 47.619 3.25 0.00 38.71 3.56
872 914 1.606994 CGTGCCAACTGGTAGTAGCAA 60.607 52.381 3.25 0.00 38.71 3.91
873 915 0.037697 CGTGCCAACTGGTAGTAGCA 60.038 55.000 1.44 1.44 35.90 3.49
874 916 0.739813 CCGTGCCAACTGGTAGTAGC 60.740 60.000 0.00 0.00 37.57 3.58
875 917 0.606604 ACCGTGCCAACTGGTAGTAG 59.393 55.000 0.00 0.00 37.57 2.57
876 918 1.820519 CTACCGTGCCAACTGGTAGTA 59.179 52.381 9.04 0.00 42.41 1.82
924 966 5.896073 ATAGATGAGGTAGGGAAAACTGG 57.104 43.478 0.00 0.00 0.00 4.00
932 974 7.410174 AGATGAGTTCTATAGATGAGGTAGGG 58.590 42.308 2.58 0.00 30.96 3.53
935 977 8.664992 ACTGAGATGAGTTCTATAGATGAGGTA 58.335 37.037 2.58 0.00 33.74 3.08
936 978 7.526041 ACTGAGATGAGTTCTATAGATGAGGT 58.474 38.462 2.58 0.00 33.74 3.85
938 980 9.725019 ACTACTGAGATGAGTTCTATAGATGAG 57.275 37.037 2.58 0.00 33.74 2.90
939 981 9.719355 GACTACTGAGATGAGTTCTATAGATGA 57.281 37.037 2.58 0.00 33.74 2.92
940 982 8.655970 CGACTACTGAGATGAGTTCTATAGATG 58.344 40.741 2.58 0.00 33.74 2.90
941 983 8.372459 ACGACTACTGAGATGAGTTCTATAGAT 58.628 37.037 2.58 0.00 33.74 1.98
942 984 7.728148 ACGACTACTGAGATGAGTTCTATAGA 58.272 38.462 0.00 0.00 33.74 1.98
943 985 7.956420 ACGACTACTGAGATGAGTTCTATAG 57.044 40.000 0.00 0.00 33.74 1.31
944 986 7.169476 CGAACGACTACTGAGATGAGTTCTATA 59.831 40.741 0.00 0.00 35.82 1.31
945 987 6.018588 CGAACGACTACTGAGATGAGTTCTAT 60.019 42.308 0.00 0.00 35.82 1.98
946 988 5.291371 CGAACGACTACTGAGATGAGTTCTA 59.709 44.000 0.00 0.00 35.82 2.10
947 989 4.093703 CGAACGACTACTGAGATGAGTTCT 59.906 45.833 0.00 0.00 35.82 3.01
948 990 4.336101 CGAACGACTACTGAGATGAGTTC 58.664 47.826 0.00 0.00 34.96 3.01
1029 1089 1.342819 GCTAGCAGGACCGATGAGATT 59.657 52.381 10.63 0.00 0.00 2.40
1242 1302 3.352338 GATGTCGCCGAACCTCCGT 62.352 63.158 0.00 0.00 0.00 4.69
1387 1447 2.426023 GTATTCGCCGGCCTCCAT 59.574 61.111 23.46 10.18 0.00 3.41
1389 1449 4.963428 CCGTATTCGCCGGCCTCC 62.963 72.222 23.46 3.33 38.85 4.30
1401 1461 1.520666 CAACGAGCTTCCCCCGTAT 59.479 57.895 0.00 0.00 35.28 3.06
1417 1477 4.659172 CCTGCCCTTCACCGCCAA 62.659 66.667 0.00 0.00 0.00 4.52
1463 1523 2.964925 TGCCGCCGACGATTATGC 60.965 61.111 0.00 0.00 43.93 3.14
1625 3019 1.062685 AGTATGCTCACTCGACGCG 59.937 57.895 3.53 3.53 0.00 6.01
1650 3044 0.393077 CCCCTGGATGTCATCGGTAC 59.607 60.000 6.74 0.00 0.00 3.34
1651 3045 0.263468 TCCCCTGGATGTCATCGGTA 59.737 55.000 6.74 0.00 0.00 4.02
1674 3068 9.378597 CTCACGCAATTATCTCTTTATTTCATG 57.621 33.333 0.00 0.00 0.00 3.07
1754 3148 1.153549 GCGCCTTGTCTTCCTCGAT 60.154 57.895 0.00 0.00 0.00 3.59
1755 3149 2.261671 GCGCCTTGTCTTCCTCGA 59.738 61.111 0.00 0.00 0.00 4.04
1756 3150 2.097038 CAGCGCCTTGTCTTCCTCG 61.097 63.158 2.29 0.00 0.00 4.63
1757 3151 0.107945 ATCAGCGCCTTGTCTTCCTC 60.108 55.000 2.29 0.00 0.00 3.71
1758 3152 1.195115 TATCAGCGCCTTGTCTTCCT 58.805 50.000 2.29 0.00 0.00 3.36
1759 3153 2.246719 ATATCAGCGCCTTGTCTTCC 57.753 50.000 2.29 0.00 0.00 3.46
1760 3154 6.568869 AGATATATATCAGCGCCTTGTCTTC 58.431 40.000 21.95 0.00 35.17 2.87
1761 3155 6.537453 AGATATATATCAGCGCCTTGTCTT 57.463 37.500 21.95 0.00 35.17 3.01
1763 3157 7.602517 AAAAGATATATATCAGCGCCTTGTC 57.397 36.000 21.95 0.00 35.17 3.18
1764 3158 7.549488 GGTAAAAGATATATATCAGCGCCTTGT 59.451 37.037 21.95 6.74 35.17 3.16
1765 3159 7.766278 AGGTAAAAGATATATATCAGCGCCTTG 59.234 37.037 21.95 0.00 35.17 3.61
1766 3160 7.766278 CAGGTAAAAGATATATATCAGCGCCTT 59.234 37.037 21.95 6.24 35.17 4.35
1767 3161 7.124298 TCAGGTAAAAGATATATATCAGCGCCT 59.876 37.037 21.95 17.71 35.17 5.52
1768 3162 7.265673 TCAGGTAAAAGATATATATCAGCGCC 58.734 38.462 21.95 16.19 35.17 6.53
1769 3163 8.879342 ATCAGGTAAAAGATATATATCAGCGC 57.121 34.615 21.95 0.00 35.17 5.92
1786 3212 9.893634 TTGTTTTCCTCGATAAATATCAGGTAA 57.106 29.630 13.69 10.21 34.95 2.85
1791 3217 7.987458 AGCTCTTGTTTTCCTCGATAAATATCA 59.013 33.333 1.70 0.00 32.98 2.15
1802 3228 3.740115 TGTACCAGCTCTTGTTTTCCTC 58.260 45.455 0.00 0.00 0.00 3.71
1816 3242 7.390440 TGATAAGTTGTCATTCCTTTGTACCAG 59.610 37.037 0.00 0.00 0.00 4.00
1819 3245 8.094798 TGTGATAAGTTGTCATTCCTTTGTAC 57.905 34.615 5.55 0.00 0.00 2.90
1857 3283 8.422566 TGTGATTTTCGGGGTAACTTTATTTTT 58.577 29.630 0.00 0.00 0.00 1.94
1861 3287 7.712204 AATGTGATTTTCGGGGTAACTTTAT 57.288 32.000 0.00 0.00 0.00 1.40
1872 3298 5.801947 GGAAGATGACAAATGTGATTTTCGG 59.198 40.000 9.12 0.00 34.97 4.30
1890 3316 3.793559 CGGGTAACAATCGAAGGAAGAT 58.206 45.455 0.00 0.00 39.74 2.40
1908 3334 1.971505 TTCATGCTCTGGTAGGCGGG 61.972 60.000 0.00 0.00 0.00 6.13
1938 3385 2.445525 TGTCCCTTTCCCTTACTGCTTT 59.554 45.455 0.00 0.00 0.00 3.51
1942 3389 1.985895 AGGTGTCCCTTTCCCTTACTG 59.014 52.381 0.00 0.00 38.13 2.74
1945 3392 0.696501 GCAGGTGTCCCTTTCCCTTA 59.303 55.000 0.00 0.00 39.89 2.69
1948 3395 0.035343 GTAGCAGGTGTCCCTTTCCC 60.035 60.000 0.00 0.00 39.89 3.97
1960 3407 2.236146 TGTATGTTGGGAGTGTAGCAGG 59.764 50.000 0.00 0.00 0.00 4.85
1975 3422 3.758554 AGCGCCTTCAAAATCTTGTATGT 59.241 39.130 2.29 0.00 33.94 2.29
1993 3440 1.218230 GCAGTGAGTGGCTATAGCGC 61.218 60.000 18.30 13.29 43.26 5.92
2021 3468 1.997606 CGTTCAACGGTTACCAGATCC 59.002 52.381 0.61 0.00 38.08 3.36
2070 3517 3.553508 GGTGAAGAATTGCAAGCATGTGT 60.554 43.478 4.94 0.00 0.00 3.72
2150 3597 5.940192 TGTTTTGTTCAGCGACAAGATAT 57.060 34.783 0.00 0.00 40.33 1.63
2151 3598 5.743026 TTGTTTTGTTCAGCGACAAGATA 57.257 34.783 0.00 0.00 40.33 1.98
2158 3605 3.692101 TCCTCTTTTGTTTTGTTCAGCGA 59.308 39.130 0.00 0.00 0.00 4.93
2178 3625 1.401539 GGTGCTGCGACTTCAAATTCC 60.402 52.381 0.00 0.00 0.00 3.01
2184 3631 1.266718 GATTTTGGTGCTGCGACTTCA 59.733 47.619 0.00 0.00 0.00 3.02
2211 3658 0.833287 TGCCCATCAGGAGAAGTAGC 59.167 55.000 0.00 0.00 38.24 3.58
2297 3744 1.029408 CGATGTTTGATTCGCCCCCA 61.029 55.000 0.00 0.00 0.00 4.96
2316 3886 5.235516 TCTTCGGTTTCTTCCTACATCAAC 58.764 41.667 0.00 0.00 0.00 3.18
2360 3930 0.806102 CAACTAGATGGTGGCGACGG 60.806 60.000 0.00 0.00 0.00 4.79
2413 3990 5.649831 AGATTTTAGTCTTTGCATGTCCTCC 59.350 40.000 0.00 0.00 0.00 4.30
2426 4003 9.201127 GTACCTGTTTTTCGTAGATTTTAGTCT 57.799 33.333 0.00 0.00 35.04 3.24
2472 4050 3.002583 TCATGTCCGGCAGCCTCA 61.003 61.111 10.54 6.58 0.00 3.86
2482 4060 3.576550 GGTCCCTCTCTTATCTCATGTCC 59.423 52.174 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.