Multiple sequence alignment - TraesCS4B01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G291500 chr4B 100.000 2990 0 0 1 2990 576400685 576403674 0.000000e+00 5522.0
1 TraesCS4B01G291500 chr4B 95.745 47 2 0 2831 2877 576446355 576446401 3.200000e-10 76.8
2 TraesCS4B01G291500 chr4D 92.889 2728 119 24 60 2736 461273787 461276490 0.000000e+00 3893.0
3 TraesCS4B01G291500 chr4D 94.470 217 7 4 2777 2990 461276573 461276787 2.220000e-86 329.0
4 TraesCS4B01G291500 chr4D 95.349 43 2 0 1 43 461273581 461273623 5.350000e-08 69.4
5 TraesCS4B01G291500 chr4A 88.953 2616 182 51 78 2655 7327238 7324692 0.000000e+00 3131.0
6 TraesCS4B01G291500 chr4A 87.209 258 13 9 2719 2974 7324659 7324420 2.940000e-70 276.0
7 TraesCS4B01G291500 chr2D 84.735 321 25 7 1258 1571 112556189 112556492 1.740000e-77 300.0
8 TraesCS4B01G291500 chr2D 100.000 33 0 0 1638 1670 112556568 112556600 8.950000e-06 62.1
9 TraesCS4B01G291500 chr5B 79.128 436 75 12 1212 1636 406219584 406219154 1.360000e-73 287.0
10 TraesCS4B01G291500 chr5A 79.128 436 75 12 1212 1636 445578605 445578175 1.360000e-73 287.0
11 TraesCS4B01G291500 chr5D 78.522 433 71 16 1212 1630 345482349 345482773 6.360000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G291500 chr4B 576400685 576403674 2989 False 5522.000000 5522 100.000 1 2990 1 chr4B.!!$F1 2989
1 TraesCS4B01G291500 chr4D 461273581 461276787 3206 False 1430.466667 3893 94.236 1 2990 3 chr4D.!!$F1 2989
2 TraesCS4B01G291500 chr4A 7324420 7327238 2818 True 1703.500000 3131 88.081 78 2974 2 chr4A.!!$R1 2896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 677 0.249868 GCGGGATCGAATCATGTGGA 60.25 55.0 0.0 0.0 39.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2257 0.036294 GCTTCGAGGCTACCTTGGTT 60.036 55.0 12.94 0.0 35.77 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.484203 CGACGACCGACTTCTCCC 59.516 66.667 0.00 0.00 41.76 4.30
45 46 3.048941 GACGACCGACTTCTCCCCG 62.049 68.421 0.00 0.00 0.00 5.73
46 47 3.060615 CGACCGACTTCTCCCCGT 61.061 66.667 0.00 0.00 0.00 5.28
49 50 2.362632 CCGACTTCTCCCCGTCCT 60.363 66.667 0.00 0.00 0.00 3.85
50 51 2.416432 CCGACTTCTCCCCGTCCTC 61.416 68.421 0.00 0.00 0.00 3.71
52 53 0.966370 CGACTTCTCCCCGTCCTCTT 60.966 60.000 0.00 0.00 0.00 2.85
53 54 1.268066 GACTTCTCCCCGTCCTCTTT 58.732 55.000 0.00 0.00 0.00 2.52
54 55 0.977395 ACTTCTCCCCGTCCTCTTTG 59.023 55.000 0.00 0.00 0.00 2.77
55 56 0.977395 CTTCTCCCCGTCCTCTTTGT 59.023 55.000 0.00 0.00 0.00 2.83
56 57 0.685097 TTCTCCCCGTCCTCTTTGTG 59.315 55.000 0.00 0.00 0.00 3.33
57 58 1.376037 CTCCCCGTCCTCTTTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
58 59 1.831652 CTCCCCGTCCTCTTTGTGCT 61.832 60.000 0.00 0.00 0.00 4.40
131 279 4.382320 CGTCGGCCGGGGAAAGAA 62.382 66.667 27.83 0.00 0.00 2.52
135 283 0.678684 TCGGCCGGGGAAAGAAAATC 60.679 55.000 27.83 0.00 0.00 2.17
188 336 2.358247 ATTGGTGACACGACGGCC 60.358 61.111 0.00 0.00 42.67 6.13
208 356 2.203728 TAGTGGGGAGTGTGGCGT 60.204 61.111 0.00 0.00 0.00 5.68
213 361 3.681835 GGGAGTGTGGCGTCGACT 61.682 66.667 14.70 0.00 0.00 4.18
254 419 0.865769 GATGGTTTTCAGACGCACGT 59.134 50.000 0.00 0.00 0.00 4.49
255 420 2.063266 GATGGTTTTCAGACGCACGTA 58.937 47.619 0.00 0.00 0.00 3.57
256 421 1.493772 TGGTTTTCAGACGCACGTAG 58.506 50.000 0.00 0.00 0.00 3.51
309 480 3.238241 GACCGTCGACATCGTGCG 61.238 66.667 17.16 7.46 40.80 5.34
310 481 3.940975 GACCGTCGACATCGTGCGT 62.941 63.158 17.16 0.00 40.80 5.24
321 507 1.713932 CATCGTGCGTCGTATGTATGG 59.286 52.381 2.39 0.00 40.80 2.74
359 545 3.131478 GCGCCGTTATTGTGGGCT 61.131 61.111 0.00 0.00 44.68 5.19
446 632 0.312416 GACCGATCCAGATCCAGTCG 59.688 60.000 8.78 0.00 34.40 4.18
452 638 3.250323 CAGATCCAGTCGCGCACG 61.250 66.667 8.75 0.00 42.01 5.34
462 654 1.135803 AGTCGCGCACGCATTAAAAAT 60.136 42.857 16.04 0.00 42.06 1.82
465 657 3.480668 GTCGCGCACGCATTAAAAATAAT 59.519 39.130 16.04 0.00 42.06 1.28
481 673 4.952262 AATAATGCGGGATCGAATCATG 57.048 40.909 0.00 0.00 32.52 3.07
482 674 2.260844 AATGCGGGATCGAATCATGT 57.739 45.000 0.00 0.00 32.52 3.21
483 675 1.516161 ATGCGGGATCGAATCATGTG 58.484 50.000 0.00 0.00 39.00 3.21
484 676 0.532640 TGCGGGATCGAATCATGTGG 60.533 55.000 0.00 0.00 39.00 4.17
485 677 0.249868 GCGGGATCGAATCATGTGGA 60.250 55.000 0.00 0.00 39.00 4.02
486 678 1.788258 CGGGATCGAATCATGTGGAG 58.212 55.000 0.00 0.00 39.00 3.86
512 704 3.322466 CTTCCCTCCCACACGGCT 61.322 66.667 0.00 0.00 0.00 5.52
764 961 8.211629 ACCAACCCTCTGTATAAATATTCACTC 58.788 37.037 0.00 0.00 0.00 3.51
831 1028 0.471022 TTTCCCCCACTTTCAAGGGC 60.471 55.000 0.00 0.00 44.06 5.19
1128 1338 4.771356 TTCTTCGTCCTCGGCGCG 62.771 66.667 0.00 0.00 37.69 6.86
1464 1674 2.761160 GTTTGGACCCCCGTGGAT 59.239 61.111 0.00 0.00 38.00 3.41
1920 2130 2.279120 GGCTCCATGTCGCTCTCG 60.279 66.667 3.85 0.00 0.00 4.04
2013 2229 2.695666 CGATCCTTCTCACCACTACCAT 59.304 50.000 0.00 0.00 0.00 3.55
2041 2257 1.116308 TCGTTCACCAGGTGACTCAA 58.884 50.000 22.87 4.51 42.60 3.02
2047 2263 1.949525 CACCAGGTGACTCAAACCAAG 59.050 52.381 15.35 0.00 40.21 3.61
2048 2264 1.133792 ACCAGGTGACTCAAACCAAGG 60.134 52.381 0.00 0.00 40.21 3.61
2050 2266 2.105821 CCAGGTGACTCAAACCAAGGTA 59.894 50.000 0.00 0.00 40.21 3.08
2180 2396 1.821753 CGATCTGGTGCTATAGAGGGG 59.178 57.143 3.21 0.00 0.00 4.79
2212 2428 2.972713 AGAACAAGCACTAGAAGGTGGA 59.027 45.455 0.00 0.00 37.65 4.02
2376 2609 5.298527 TGGTGATGAGTACTCCGTATTAGTG 59.701 44.000 20.11 0.00 0.00 2.74
2394 2627 6.875948 TTAGTGTGTGCTTTGTTATGTGAT 57.124 33.333 0.00 0.00 0.00 3.06
2401 2634 7.547019 TGTGTGCTTTGTTATGTGATTGAAAAA 59.453 29.630 0.00 0.00 0.00 1.94
2436 2670 1.205893 CTCTAACTGACTGCCCACTCC 59.794 57.143 0.00 0.00 0.00 3.85
2451 2685 0.320771 ACTCCGTTCATGGTCACTGC 60.321 55.000 0.00 0.00 0.00 4.40
2465 2699 2.823147 CTGCTGTGCTAGGCTGCC 60.823 66.667 11.65 11.65 0.00 4.85
2482 2718 2.661537 CAGCGGCGTCACTGTCAA 60.662 61.111 9.37 0.00 0.00 3.18
2526 2762 1.252904 ACTTGATGTGCACCCATGGC 61.253 55.000 15.69 0.00 0.00 4.40
2528 2764 3.149648 GATGTGCACCCATGGCCC 61.150 66.667 15.69 0.00 0.00 5.80
2529 2765 4.783501 ATGTGCACCCATGGCCCC 62.784 66.667 15.69 0.00 0.00 5.80
2531 2767 4.702274 GTGCACCCATGGCCCCTT 62.702 66.667 6.09 0.00 0.00 3.95
2532 2768 4.380945 TGCACCCATGGCCCCTTC 62.381 66.667 6.09 0.00 0.00 3.46
2548 2792 4.082517 GCCCCTTCTTTCATCAGTTTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
2555 2799 5.692204 TCTTTCATCAGTTTCTTCGTCAGTC 59.308 40.000 0.00 0.00 0.00 3.51
2563 2807 2.861147 TCTTCGTCAGTCCTCTCTCA 57.139 50.000 0.00 0.00 0.00 3.27
2584 2828 4.044317 TCAGGGACTAGAGTTTAGGACAGT 59.956 45.833 0.00 0.00 36.02 3.55
2588 2832 5.254901 GGACTAGAGTTTAGGACAGTGAGA 58.745 45.833 0.00 0.00 0.00 3.27
2598 2842 0.801251 GACAGTGAGAGTGCAATGGC 59.199 55.000 0.00 0.00 38.11 4.40
2618 2862 0.744771 GCCACCTCGATCACTTTCCC 60.745 60.000 0.00 0.00 0.00 3.97
2644 2888 2.424557 CTCCATGGCATGATAGCACTC 58.575 52.381 28.43 0.00 35.83 3.51
2656 2900 6.127897 GCATGATAGCACTCTACCTTTTGTTT 60.128 38.462 0.00 0.00 0.00 2.83
2662 2906 4.574828 GCACTCTACCTTTTGTTTGTGAGA 59.425 41.667 0.00 0.00 0.00 3.27
2663 2907 5.239525 GCACTCTACCTTTTGTTTGTGAGAT 59.760 40.000 0.00 0.00 0.00 2.75
2670 2914 5.066505 ACCTTTTGTTTGTGAGATGACACTC 59.933 40.000 0.00 0.00 40.87 3.51
2671 2915 4.794248 TTTGTTTGTGAGATGACACTCG 57.206 40.909 0.00 0.00 40.87 4.18
2691 2935 0.464373 ACCTGCCGCACAAGATATGG 60.464 55.000 0.00 0.00 0.00 2.74
2742 2986 6.462073 TTCGTTTAATCTCAGAAGAAACCG 57.538 37.500 8.50 5.38 34.49 4.44
2744 2988 5.632347 TCGTTTAATCTCAGAAGAAACCGTC 59.368 40.000 8.50 0.00 34.49 4.79
2746 2990 5.477607 TTAATCTCAGAAGAAACCGTCCA 57.522 39.130 0.00 0.00 34.49 4.02
2747 2991 3.601443 ATCTCAGAAGAAACCGTCCAG 57.399 47.619 0.00 0.00 34.49 3.86
2749 2993 2.698797 TCTCAGAAGAAACCGTCCAGTT 59.301 45.455 0.00 0.00 0.00 3.16
2750 2994 3.893200 TCTCAGAAGAAACCGTCCAGTTA 59.107 43.478 0.00 0.00 0.00 2.24
2761 3015 2.288825 CCGTCCAGTTAGTTGCTGAAGA 60.289 50.000 0.00 0.00 36.12 2.87
2772 3026 5.938438 AGTTGCTGAAGATTGAAGAAGAC 57.062 39.130 0.00 0.00 0.00 3.01
2791 3077 5.683876 AGACCACAGCTGTAAATATCAGT 57.316 39.130 21.20 6.83 35.60 3.41
2807 3093 7.615039 AATATCAGTCTGTGAGAAGATGGAT 57.385 36.000 0.00 0.00 39.07 3.41
2879 3165 0.882042 CGATCAATTCTGCTCCCGGG 60.882 60.000 16.85 16.85 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.977395 CAAAGAGGACGGGGAGAAGT 59.023 55.000 0.00 0.00 0.00 3.01
36 37 0.977395 ACAAAGAGGACGGGGAGAAG 59.023 55.000 0.00 0.00 0.00 2.85
43 44 1.078759 CGCTAGCACAAAGAGGACGG 61.079 60.000 16.45 0.00 0.00 4.79
45 46 1.797025 AACGCTAGCACAAAGAGGAC 58.203 50.000 16.45 0.00 0.00 3.85
46 47 2.143122 CAAACGCTAGCACAAAGAGGA 58.857 47.619 16.45 0.00 0.00 3.71
49 50 2.939756 TCAACAAACGCTAGCACAAAGA 59.060 40.909 16.45 0.40 0.00 2.52
50 51 3.035942 GTCAACAAACGCTAGCACAAAG 58.964 45.455 16.45 0.00 0.00 2.77
52 53 2.285083 AGTCAACAAACGCTAGCACAA 58.715 42.857 16.45 0.00 0.00 3.33
53 54 1.948104 AGTCAACAAACGCTAGCACA 58.052 45.000 16.45 0.00 0.00 4.57
54 55 2.602217 CCAAGTCAACAAACGCTAGCAC 60.602 50.000 16.45 2.29 0.00 4.40
55 56 1.601903 CCAAGTCAACAAACGCTAGCA 59.398 47.619 16.45 0.00 0.00 3.49
56 57 1.602377 ACCAAGTCAACAAACGCTAGC 59.398 47.619 4.06 4.06 0.00 3.42
57 58 3.131396 AGACCAAGTCAACAAACGCTAG 58.869 45.455 0.00 0.00 34.60 3.42
58 59 3.188159 AGACCAAGTCAACAAACGCTA 57.812 42.857 0.00 0.00 34.60 4.26
125 273 2.420372 GCCTCTGACGGGATTTTCTTTC 59.580 50.000 0.00 0.00 0.00 2.62
129 277 2.115343 AAGCCTCTGACGGGATTTTC 57.885 50.000 0.00 0.00 0.00 2.29
131 279 1.209747 GGTAAGCCTCTGACGGGATTT 59.790 52.381 0.00 0.00 34.17 2.17
135 283 0.391263 GTTGGTAAGCCTCTGACGGG 60.391 60.000 0.00 0.00 35.27 5.28
139 287 3.173151 TGATCTGTTGGTAAGCCTCTGA 58.827 45.455 0.00 0.00 35.27 3.27
188 336 1.296715 GCCACACTCCCCACTACAG 59.703 63.158 0.00 0.00 0.00 2.74
213 361 2.626780 CCGGCTGACAGACTCGTCA 61.627 63.158 6.65 7.29 43.54 4.35
225 373 1.339055 TGAAAACCATCTCTCCGGCTG 60.339 52.381 0.00 0.00 0.00 4.85
254 419 1.005037 CCTTGACCACGCAGCACTA 60.005 57.895 0.00 0.00 0.00 2.74
255 420 2.281070 CCTTGACCACGCAGCACT 60.281 61.111 0.00 0.00 0.00 4.40
256 421 1.845809 CTTCCTTGACCACGCAGCAC 61.846 60.000 0.00 0.00 0.00 4.40
257 422 1.597854 CTTCCTTGACCACGCAGCA 60.598 57.895 0.00 0.00 0.00 4.41
258 423 2.970974 GCTTCCTTGACCACGCAGC 61.971 63.158 0.00 0.00 0.00 5.25
259 424 2.328099 GGCTTCCTTGACCACGCAG 61.328 63.158 0.00 0.00 0.00 5.18
260 425 2.281484 GGCTTCCTTGACCACGCA 60.281 61.111 0.00 0.00 0.00 5.24
261 426 2.281484 TGGCTTCCTTGACCACGC 60.281 61.111 0.00 0.00 0.00 5.34
262 427 3.655481 GTGGCTTCCTTGACCACG 58.345 61.111 0.00 0.00 44.02 4.94
264 429 2.429930 CCGTGGCTTCCTTGACCA 59.570 61.111 0.00 0.00 0.00 4.02
309 480 3.298317 GTTCGCTCTCCATACATACGAC 58.702 50.000 0.00 0.00 0.00 4.34
310 481 2.032290 CGTTCGCTCTCCATACATACGA 60.032 50.000 0.00 0.00 0.00 3.43
314 500 1.202417 CCACGTTCGCTCTCCATACAT 60.202 52.381 0.00 0.00 0.00 2.29
321 507 2.273370 TGATTACCACGTTCGCTCTC 57.727 50.000 0.00 0.00 0.00 3.20
453 639 7.807433 TGATTCGATCCCGCATTATTTTTAATG 59.193 33.333 0.00 2.14 39.69 1.90
462 654 3.066380 CACATGATTCGATCCCGCATTA 58.934 45.455 0.00 0.00 35.37 1.90
465 657 0.532640 CCACATGATTCGATCCCGCA 60.533 55.000 0.00 0.00 35.37 5.69
481 673 0.256177 GGGAAGGGATTCCACTCCAC 59.744 60.000 18.97 8.78 42.89 4.02
482 674 0.121197 AGGGAAGGGATTCCACTCCA 59.879 55.000 18.97 0.00 42.89 3.86
483 675 0.840617 GAGGGAAGGGATTCCACTCC 59.159 60.000 12.03 12.03 42.89 3.85
484 676 0.840617 GGAGGGAAGGGATTCCACTC 59.159 60.000 4.80 11.46 42.89 3.51
485 677 0.624795 GGGAGGGAAGGGATTCCACT 60.625 60.000 4.80 4.02 42.89 4.00
486 678 0.919289 TGGGAGGGAAGGGATTCCAC 60.919 60.000 4.80 2.90 42.89 4.02
911 1112 3.133691 CCACGGTGACAAGATCCATATG 58.866 50.000 10.28 0.00 0.00 1.78
1449 1659 2.530661 ACATCCACGGGGGTCCAA 60.531 61.111 2.42 0.00 38.11 3.53
1960 2170 4.115199 GCCCTCCTTGGCCGACAT 62.115 66.667 0.00 0.00 46.11 3.06
2013 2229 0.386352 CTGGTGAACGACGACGCTAA 60.386 55.000 7.30 0.00 43.96 3.09
2041 2257 0.036294 GCTTCGAGGCTACCTTGGTT 60.036 55.000 12.94 0.00 35.77 3.67
2180 2396 0.169009 GCTTGTTCTTCGCCATCCAC 59.831 55.000 0.00 0.00 0.00 4.02
2212 2428 1.062962 CCTGGCATCCTAAAACCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
2376 2609 7.462109 TTTTCAATCACATAACAAAGCACAC 57.538 32.000 0.00 0.00 0.00 3.82
2394 2627 4.464597 AGTTAGGCACACAAGGTTTTTCAA 59.535 37.500 0.00 0.00 0.00 2.69
2401 2634 3.646637 AGTTAGAGTTAGGCACACAAGGT 59.353 43.478 0.00 0.00 0.00 3.50
2436 2670 2.918571 ACAGCAGTGACCATGAACG 58.081 52.632 0.00 0.00 0.00 3.95
2451 2685 2.823147 GCTGGCAGCCTAGCACAG 60.823 66.667 28.87 9.79 39.67 3.66
2482 2718 4.205587 CCTCATTCTATGAAGCAAAGCCT 58.794 43.478 0.00 0.00 39.11 4.58
2526 2762 4.154918 CGAAGAAACTGATGAAAGAAGGGG 59.845 45.833 0.00 0.00 0.00 4.79
2528 2764 5.466728 TGACGAAGAAACTGATGAAAGAAGG 59.533 40.000 0.00 0.00 0.00 3.46
2529 2765 6.201806 ACTGACGAAGAAACTGATGAAAGAAG 59.798 38.462 0.00 0.00 0.00 2.85
2531 2767 5.601662 ACTGACGAAGAAACTGATGAAAGA 58.398 37.500 0.00 0.00 0.00 2.52
2532 2768 5.107298 GGACTGACGAAGAAACTGATGAAAG 60.107 44.000 0.00 0.00 0.00 2.62
2548 2792 0.034960 TCCCTGAGAGAGGACTGACG 60.035 60.000 0.00 0.00 46.33 4.35
2555 2799 3.662759 AACTCTAGTCCCTGAGAGAGG 57.337 52.381 5.93 0.00 41.55 3.69
2563 2807 4.044317 TCACTGTCCTAAACTCTAGTCCCT 59.956 45.833 0.00 0.00 0.00 4.20
2584 2828 2.747460 GGCGCCATTGCACTCTCA 60.747 61.111 24.80 0.00 37.32 3.27
2588 2832 4.666253 AGGTGGCGCCATTGCACT 62.666 61.111 35.23 21.74 40.61 4.40
2598 2842 1.084370 GGAAAGTGATCGAGGTGGCG 61.084 60.000 0.00 0.00 0.00 5.69
2618 2862 2.195741 ATCATGCCATGGAGGAATCG 57.804 50.000 18.40 0.00 41.22 3.34
2644 2888 6.260936 AGTGTCATCTCACAAACAAAAGGTAG 59.739 38.462 0.00 0.00 40.37 3.18
2656 2900 1.541588 CAGGTCGAGTGTCATCTCACA 59.458 52.381 0.00 0.00 40.37 3.58
2662 2906 2.573869 CGGCAGGTCGAGTGTCAT 59.426 61.111 0.63 0.00 0.00 3.06
2663 2907 4.357947 GCGGCAGGTCGAGTGTCA 62.358 66.667 0.00 0.00 0.00 3.58
2670 2914 0.530650 ATATCTTGTGCGGCAGGTCG 60.531 55.000 1.18 0.00 0.00 4.79
2671 2915 0.940126 CATATCTTGTGCGGCAGGTC 59.060 55.000 1.18 0.00 0.00 3.85
2691 2935 3.128349 TGAACGGTTTTCTGTCTAGTGC 58.872 45.455 0.00 0.00 38.64 4.40
2740 2984 2.069273 CTTCAGCAACTAACTGGACGG 58.931 52.381 0.00 0.00 35.78 4.79
2742 2986 4.997395 TCAATCTTCAGCAACTAACTGGAC 59.003 41.667 0.00 0.00 35.78 4.02
2744 2988 5.702670 TCTTCAATCTTCAGCAACTAACTGG 59.297 40.000 0.00 0.00 35.78 4.00
2746 2990 7.172361 GTCTTCTTCAATCTTCAGCAACTAACT 59.828 37.037 0.00 0.00 0.00 2.24
2747 2991 7.294473 GTCTTCTTCAATCTTCAGCAACTAAC 58.706 38.462 0.00 0.00 0.00 2.34
2749 2993 5.934625 GGTCTTCTTCAATCTTCAGCAACTA 59.065 40.000 0.00 0.00 0.00 2.24
2750 2994 4.759183 GGTCTTCTTCAATCTTCAGCAACT 59.241 41.667 0.00 0.00 0.00 3.16
2761 3015 3.498774 ACAGCTGTGGTCTTCTTCAAT 57.501 42.857 20.97 0.00 0.00 2.57
2772 3026 5.423015 ACAGACTGATATTTACAGCTGTGG 58.577 41.667 29.57 10.59 43.46 4.17
2791 3077 2.121948 CCCCATCCATCTTCTCACAGA 58.878 52.381 0.00 0.00 0.00 3.41
2807 3093 3.315949 GCGTCACCACCTACCCCA 61.316 66.667 0.00 0.00 0.00 4.96
2879 3165 3.217681 AGCTAGCTGGTCTACTCTACC 57.782 52.381 18.57 0.00 37.53 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.