Multiple sequence alignment - TraesCS4B01G291200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G291200 chr4B 100.000 2350 0 0 2592 4941 576108831 576111180 0.000000e+00 4340.0
1 TraesCS4B01G291200 chr4B 100.000 2122 0 0 1 2122 576106240 576108361 0.000000e+00 3919.0
2 TraesCS4B01G291200 chr4B 90.909 77 7 0 4336 4412 672446658 672446582 2.430000e-18 104.0
3 TraesCS4B01G291200 chr4D 95.697 1557 52 8 2592 4139 460950239 460951789 0.000000e+00 2490.0
4 TraesCS4B01G291200 chr4D 95.455 462 17 1 899 1356 460948982 460949443 0.000000e+00 734.0
5 TraesCS4B01G291200 chr4D 86.856 563 49 17 1470 2025 460949622 460950166 1.520000e-169 606.0
6 TraesCS4B01G291200 chr4D 94.538 238 10 2 623 858 460948116 460948352 1.010000e-96 364.0
7 TraesCS4B01G291200 chr4D 90.710 183 12 4 4146 4327 460951834 460952012 6.390000e-59 239.0
8 TraesCS4B01G291200 chr4D 88.950 181 13 4 4576 4753 460952089 460952265 3.000000e-52 217.0
9 TraesCS4B01G291200 chr4D 92.857 112 8 0 4782 4893 460952324 460952435 3.960000e-36 163.0
10 TraesCS4B01G291200 chr4D 88.095 84 9 1 4329 4412 48532038 48531956 1.130000e-16 99.0
11 TraesCS4B01G291200 chr4D 90.000 60 5 1 1368 1427 460949559 460949617 5.300000e-10 76.8
12 TraesCS4B01G291200 chr4A 95.917 1445 48 8 2616 4057 7464330 7462894 0.000000e+00 2331.0
13 TraesCS4B01G291200 chr4A 93.057 749 35 5 623 1356 7466034 7465288 0.000000e+00 1079.0
14 TraesCS4B01G291200 chr4A 85.435 563 58 15 1473 2028 7465106 7464561 9.290000e-157 564.0
15 TraesCS4B01G291200 chr4A 93.488 215 8 4 4118 4331 7462877 7462668 1.030000e-81 315.0
16 TraesCS4B01G291200 chr4A 86.667 90 12 0 4329 4418 152575977 152575888 3.150000e-17 100.0
17 TraesCS4B01G291200 chr4A 88.333 60 6 1 1368 1427 7465172 7465114 2.470000e-08 71.3
18 TraesCS4B01G291200 chr5D 85.382 602 82 6 1 599 56803414 56804012 1.950000e-173 619.0
19 TraesCS4B01G291200 chr3B 85.382 602 82 6 1 599 182466732 182467330 1.950000e-173 619.0
20 TraesCS4B01G291200 chr3B 89.024 82 6 2 4331 4411 617254652 617254573 1.130000e-16 99.0
21 TraesCS4B01G291200 chr6B 85.008 607 83 6 1 602 637047216 637046613 1.180000e-170 610.0
22 TraesCS4B01G291200 chr6B 84.080 603 89 4 1 601 179373061 179372464 4.290000e-160 575.0
23 TraesCS4B01G291200 chr6B 79.969 649 95 20 2748 3382 109142374 109143001 3.510000e-121 446.0
24 TraesCS4B01G291200 chr6B 80.420 286 42 12 1003 1275 109141600 109141884 6.480000e-49 206.0
25 TraesCS4B01G291200 chr6B 92.958 71 5 0 4342 4412 66741390 66741320 2.430000e-18 104.0
26 TraesCS4B01G291200 chr2D 86.606 545 67 5 1 541 587269601 587269059 9.150000e-167 597.0
27 TraesCS4B01G291200 chr2D 83.580 609 92 8 1 605 69500192 69500796 9.290000e-157 564.0
28 TraesCS4B01G291200 chr6D 85.263 570 81 3 1 568 93632535 93633103 7.130000e-163 584.0
29 TraesCS4B01G291200 chr6D 90.789 76 6 1 4337 4412 429084337 429084263 3.150000e-17 100.0
30 TraesCS4B01G291200 chr2B 83.828 606 91 7 1 602 158630139 158629537 2.000000e-158 569.0
31 TraesCS4B01G291200 chr1D 83.908 609 85 11 1 603 493867206 493867807 2.000000e-158 569.0
32 TraesCS4B01G291200 chrUn 80.723 664 101 19 2748 3397 97735438 97736088 4.440000e-135 492.0
33 TraesCS4B01G291200 chrUn 83.088 272 32 13 1003 1269 97734594 97734856 8.270000e-58 235.0
34 TraesCS4B01G291200 chr6A 80.184 651 104 16 2748 3384 53114601 53115240 9.690000e-127 464.0
35 TraesCS4B01G291200 chr6A 81.879 298 28 19 1003 1275 53113654 53113950 1.380000e-55 228.0
36 TraesCS4B01G291200 chr5B 88.372 86 9 1 4327 4412 403423369 403423285 8.750000e-18 102.0
37 TraesCS4B01G291200 chr5B 79.000 100 21 0 504 603 122140887 122140788 8.880000e-08 69.4
38 TraesCS4B01G291200 chr7D 90.789 76 6 1 4337 4412 68444697 68444623 3.150000e-17 100.0
39 TraesCS4B01G291200 chr7A 89.024 82 6 3 4333 4412 154328711 154328791 1.130000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G291200 chr4B 576106240 576111180 4940 False 4129.500 4340 100.000000 1 4941 2 chr4B.!!$F1 4940
1 TraesCS4B01G291200 chr4D 460948116 460952435 4319 False 611.225 2490 91.882875 623 4893 8 chr4D.!!$F1 4270
2 TraesCS4B01G291200 chr4A 7462668 7466034 3366 True 872.060 2331 91.246000 623 4331 5 chr4A.!!$R2 3708
3 TraesCS4B01G291200 chr5D 56803414 56804012 598 False 619.000 619 85.382000 1 599 1 chr5D.!!$F1 598
4 TraesCS4B01G291200 chr3B 182466732 182467330 598 False 619.000 619 85.382000 1 599 1 chr3B.!!$F1 598
5 TraesCS4B01G291200 chr6B 637046613 637047216 603 True 610.000 610 85.008000 1 602 1 chr6B.!!$R3 601
6 TraesCS4B01G291200 chr6B 179372464 179373061 597 True 575.000 575 84.080000 1 601 1 chr6B.!!$R2 600
7 TraesCS4B01G291200 chr6B 109141600 109143001 1401 False 326.000 446 80.194500 1003 3382 2 chr6B.!!$F1 2379
8 TraesCS4B01G291200 chr2D 587269059 587269601 542 True 597.000 597 86.606000 1 541 1 chr2D.!!$R1 540
9 TraesCS4B01G291200 chr2D 69500192 69500796 604 False 564.000 564 83.580000 1 605 1 chr2D.!!$F1 604
10 TraesCS4B01G291200 chr6D 93632535 93633103 568 False 584.000 584 85.263000 1 568 1 chr6D.!!$F1 567
11 TraesCS4B01G291200 chr2B 158629537 158630139 602 True 569.000 569 83.828000 1 602 1 chr2B.!!$R1 601
12 TraesCS4B01G291200 chr1D 493867206 493867807 601 False 569.000 569 83.908000 1 603 1 chr1D.!!$F1 602
13 TraesCS4B01G291200 chrUn 97734594 97736088 1494 False 363.500 492 81.905500 1003 3397 2 chrUn.!!$F1 2394
14 TraesCS4B01G291200 chr6A 53113654 53115240 1586 False 346.000 464 81.031500 1003 3384 2 chr6A.!!$F1 2381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 629 0.044092 TTAGGAGAGGTGGCATGGGA 59.956 55.0 0.00 0.0 0.00 4.37 F
1769 2620 0.175073 ATACGTCTGAAAGGGCGTCC 59.825 55.0 0.00 0.0 42.67 4.79 F
2049 2905 0.036388 CCTTGGCCTTTCGCTGAGTA 60.036 55.0 3.32 0.0 37.74 2.59 F
2072 2928 0.108377 TGTGTGCGACAAGTCACAGT 60.108 50.0 0.72 0.0 43.01 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2886 0.036388 TACTCAGCGAAAGGCCAAGG 60.036 55.000 5.01 0.00 45.17 3.61 R
2597 3453 0.037590 TAACCAGCAACAATCCCGCT 59.962 50.000 0.00 0.00 36.10 5.52 R
3859 4738 0.797542 ACGACGATAGAGATAGCGCC 59.202 55.000 2.29 0.00 41.38 6.53 R
3999 4878 1.398390 GCCTGTCATCAACCGAATGAC 59.602 52.381 8.86 8.86 43.50 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.376581 CCCAAAGACAAGAATCAGCTAGAAAT 59.623 38.462 0.00 0.00 0.00 2.17
43 44 6.260493 AGACAAGAATCAGCTAGAAATGATGC 59.740 38.462 0.00 0.00 36.31 3.91
61 62 3.819188 CGAGAGGGCATTTGGAGC 58.181 61.111 0.00 0.00 0.00 4.70
73 74 1.426251 TTTGGAGCTCTTCAGGCCCA 61.426 55.000 14.64 0.00 0.00 5.36
98 99 1.594293 AGTTGTTCGTGGACCTGCG 60.594 57.895 0.00 0.00 0.00 5.18
107 108 1.234821 GTGGACCTGCGAAACAATGA 58.765 50.000 0.00 0.00 0.00 2.57
149 151 3.814842 ACGTGATGACATGTTGTGTGATT 59.185 39.130 0.00 0.00 42.73 2.57
183 185 2.433004 TCGAGGACGAGGGTGACA 59.567 61.111 0.00 0.00 43.81 3.58
223 225 4.229123 AGAATTGGAGAACATGGGTGATCT 59.771 41.667 0.00 0.00 39.84 2.75
237 239 3.134081 GGGTGATCTTATCCAACTTCCGA 59.866 47.826 0.00 0.00 0.00 4.55
239 241 5.183228 GGTGATCTTATCCAACTTCCGAAA 58.817 41.667 0.00 0.00 0.00 3.46
248 250 3.072476 TCCAACTTCCGAAACAGAATCCT 59.928 43.478 0.00 0.00 0.00 3.24
294 297 8.342725 TCAAATGCATCAATAAATTCGACATG 57.657 30.769 0.00 0.00 0.00 3.21
301 304 7.428020 CATCAATAAATTCGACATGGACCAAT 58.572 34.615 0.00 0.00 0.00 3.16
347 350 1.987306 TGAGCATCAGTGGGCGGTA 60.987 57.895 0.00 0.00 42.56 4.02
351 354 0.885196 GCATCAGTGGGCGGTAAAAA 59.115 50.000 0.00 0.00 0.00 1.94
360 364 1.203758 GGGCGGTAAAAAGGGACAATG 59.796 52.381 0.00 0.00 0.00 2.82
373 377 2.428171 GGGACAATGATGTTGGGATGTG 59.572 50.000 0.00 0.00 40.74 3.21
415 420 6.435430 AATTTAAACTAGTGATGCATGCGA 57.565 33.333 14.09 2.48 0.00 5.10
432 437 5.423717 CATGCGACTATTTGAACGTATGTC 58.576 41.667 0.00 0.00 41.28 3.06
464 469 1.014352 GGCAACTTAATCGTGCGGAT 58.986 50.000 0.00 0.00 36.78 4.18
500 510 3.000684 AGACCAGAGTATGCGACTACA 57.999 47.619 0.00 0.00 39.06 2.74
524 534 2.016393 GATGACGTCCTCCCGCATCA 62.016 60.000 14.12 0.00 39.22 3.07
529 539 1.296715 GTCCTCCCGCATCAGTGTT 59.703 57.895 0.00 0.00 0.00 3.32
534 544 0.324614 TCCCGCATCAGTGTTCACAT 59.675 50.000 5.74 0.00 0.00 3.21
544 555 4.096681 TCAGTGTTCACATACTGATCCCT 58.903 43.478 5.74 0.00 45.97 4.20
548 560 4.160439 GTGTTCACATACTGATCCCTCTGA 59.840 45.833 0.00 0.00 0.00 3.27
551 563 2.366916 CACATACTGATCCCTCTGACCC 59.633 54.545 0.00 0.00 0.00 4.46
605 617 4.348168 GGTATTGAAGATGCCCTTAGGAGA 59.652 45.833 0.00 0.00 34.68 3.71
606 618 4.703379 ATTGAAGATGCCCTTAGGAGAG 57.297 45.455 0.00 0.00 34.68 3.20
607 619 2.402564 TGAAGATGCCCTTAGGAGAGG 58.597 52.381 0.00 0.00 34.68 3.69
608 620 2.293184 TGAAGATGCCCTTAGGAGAGGT 60.293 50.000 0.00 0.00 34.68 3.85
609 621 1.799933 AGATGCCCTTAGGAGAGGTG 58.200 55.000 0.00 0.00 34.88 4.00
610 622 0.761802 GATGCCCTTAGGAGAGGTGG 59.238 60.000 0.00 0.00 34.88 4.61
611 623 1.348775 ATGCCCTTAGGAGAGGTGGC 61.349 60.000 0.00 0.00 34.88 5.01
612 624 1.995626 GCCCTTAGGAGAGGTGGCA 60.996 63.158 0.00 0.00 34.88 4.92
613 625 1.348775 GCCCTTAGGAGAGGTGGCAT 61.349 60.000 0.00 0.00 34.88 4.40
614 626 0.471617 CCCTTAGGAGAGGTGGCATG 59.528 60.000 0.00 0.00 34.88 4.06
615 627 0.471617 CCTTAGGAGAGGTGGCATGG 59.528 60.000 0.00 0.00 31.89 3.66
616 628 0.471617 CTTAGGAGAGGTGGCATGGG 59.528 60.000 0.00 0.00 0.00 4.00
617 629 0.044092 TTAGGAGAGGTGGCATGGGA 59.956 55.000 0.00 0.00 0.00 4.37
618 630 0.044092 TAGGAGAGGTGGCATGGGAA 59.956 55.000 0.00 0.00 0.00 3.97
619 631 0.625683 AGGAGAGGTGGCATGGGAAT 60.626 55.000 0.00 0.00 0.00 3.01
620 632 0.466922 GGAGAGGTGGCATGGGAATG 60.467 60.000 0.00 0.00 0.00 2.67
621 633 0.466922 GAGAGGTGGCATGGGAATGG 60.467 60.000 0.00 0.00 0.00 3.16
645 657 3.918328 GAGGGGAACGTGGAGGGGA 62.918 68.421 0.00 0.00 0.00 4.81
649 661 0.393944 GGGAACGTGGAGGGGATTTC 60.394 60.000 0.00 0.00 0.00 2.17
651 663 0.743345 GAACGTGGAGGGGATTTCCG 60.743 60.000 0.00 0.00 37.54 4.30
701 713 1.072489 TCGGCCCATGACAGTAACAAA 59.928 47.619 0.00 0.00 0.00 2.83
732 744 2.781595 GATTGTCCCACCGACGTGCT 62.782 60.000 0.00 0.00 45.23 4.40
981 1584 1.650528 CAAGGGGAGAGAACAGGAGT 58.349 55.000 0.00 0.00 0.00 3.85
1115 1743 1.525596 CGACGTGTTCTCTCGTGATC 58.474 55.000 0.00 0.00 42.45 2.92
1154 1802 3.532155 GCGCTGAGGAGGATCGGT 61.532 66.667 0.00 0.00 34.37 4.69
1303 1951 2.897436 TCTCGTTTCTGCAGGATCATG 58.103 47.619 15.13 2.22 0.00 3.07
1327 2033 6.826231 TGAAACCTGAACTTACATTTCTGTCA 59.174 34.615 0.00 0.00 36.79 3.58
1337 2043 7.056006 ACTTACATTTCTGTCATGGCATATCA 58.944 34.615 0.00 1.52 36.79 2.15
1356 2062 7.009540 GCATATCAAGTACTGCAAAATTGGTTC 59.990 37.037 0.00 0.00 34.77 3.62
1358 2064 6.214191 TCAAGTACTGCAAAATTGGTTCAA 57.786 33.333 0.00 0.00 0.00 2.69
1359 2065 6.272318 TCAAGTACTGCAAAATTGGTTCAAG 58.728 36.000 0.00 0.00 0.00 3.02
1360 2066 5.852282 AGTACTGCAAAATTGGTTCAAGT 57.148 34.783 0.00 0.00 0.00 3.16
1361 2067 5.591099 AGTACTGCAAAATTGGTTCAAGTG 58.409 37.500 0.00 0.00 0.00 3.16
1362 2068 3.795877 ACTGCAAAATTGGTTCAAGTGG 58.204 40.909 0.00 0.00 0.00 4.00
1363 2069 3.450457 ACTGCAAAATTGGTTCAAGTGGA 59.550 39.130 0.00 0.00 0.00 4.02
1364 2070 4.081198 ACTGCAAAATTGGTTCAAGTGGAA 60.081 37.500 0.00 0.00 0.00 3.53
1365 2071 4.836825 TGCAAAATTGGTTCAAGTGGAAA 58.163 34.783 0.00 0.00 37.23 3.13
1367 2073 5.884792 TGCAAAATTGGTTCAAGTGGAAATT 59.115 32.000 0.00 0.00 37.23 1.82
1368 2074 6.183360 TGCAAAATTGGTTCAAGTGGAAATTG 60.183 34.615 0.00 0.00 44.50 2.32
1396 2155 4.467795 TCCACTTGAGGATGAGAAACTAGG 59.532 45.833 0.00 0.00 31.23 3.02
1445 2204 3.890674 GCCACAGGCGAAACTAGG 58.109 61.111 0.00 0.00 39.62 3.02
1446 2205 1.003718 GCCACAGGCGAAACTAGGT 60.004 57.895 0.00 0.00 39.62 3.08
1447 2206 0.605589 GCCACAGGCGAAACTAGGTT 60.606 55.000 0.00 0.00 39.62 3.50
1448 2207 1.439679 CCACAGGCGAAACTAGGTTC 58.560 55.000 10.69 10.69 0.00 3.62
1449 2208 1.270625 CCACAGGCGAAACTAGGTTCA 60.271 52.381 20.24 0.00 0.00 3.18
1450 2209 2.069273 CACAGGCGAAACTAGGTTCAG 58.931 52.381 20.24 13.37 0.00 3.02
1451 2210 1.968493 ACAGGCGAAACTAGGTTCAGA 59.032 47.619 20.24 0.00 0.00 3.27
1452 2211 2.567615 ACAGGCGAAACTAGGTTCAGAT 59.432 45.455 20.24 2.13 0.00 2.90
1453 2212 2.932614 CAGGCGAAACTAGGTTCAGATG 59.067 50.000 20.24 10.69 0.00 2.90
1454 2213 2.832129 AGGCGAAACTAGGTTCAGATGA 59.168 45.455 20.24 0.00 0.00 2.92
1455 2214 3.118956 AGGCGAAACTAGGTTCAGATGAG 60.119 47.826 20.24 4.08 0.00 2.90
1456 2215 3.119101 GGCGAAACTAGGTTCAGATGAGA 60.119 47.826 20.24 0.00 0.00 3.27
1457 2216 4.495422 GCGAAACTAGGTTCAGATGAGAA 58.505 43.478 20.24 0.00 0.00 2.87
1458 2217 4.929808 GCGAAACTAGGTTCAGATGAGAAA 59.070 41.667 20.24 0.00 0.00 2.52
1459 2218 5.163943 GCGAAACTAGGTTCAGATGAGAAAC 60.164 44.000 20.24 0.00 35.44 2.78
1460 2219 6.159988 CGAAACTAGGTTCAGATGAGAAACT 58.840 40.000 20.24 0.00 46.66 2.66
1461 2220 6.647067 CGAAACTAGGTTCAGATGAGAAACTT 59.353 38.462 20.24 0.00 42.70 2.66
1462 2221 7.359598 CGAAACTAGGTTCAGATGAGAAACTTG 60.360 40.741 20.24 1.00 42.70 3.16
1463 2222 6.672266 ACTAGGTTCAGATGAGAAACTTGA 57.328 37.500 9.50 0.00 42.70 3.02
1464 2223 7.251321 ACTAGGTTCAGATGAGAAACTTGAT 57.749 36.000 9.50 0.00 42.70 2.57
1465 2224 7.684529 ACTAGGTTCAGATGAGAAACTTGATT 58.315 34.615 9.50 0.00 42.70 2.57
1466 2225 7.821846 ACTAGGTTCAGATGAGAAACTTGATTC 59.178 37.037 9.50 0.00 42.70 2.52
1467 2226 6.537355 AGGTTCAGATGAGAAACTTGATTCA 58.463 36.000 0.00 0.00 42.70 2.57
1468 2227 6.654161 AGGTTCAGATGAGAAACTTGATTCAG 59.346 38.462 0.00 0.00 42.70 3.02
1469 2228 6.128063 GGTTCAGATGAGAAACTTGATTCAGG 60.128 42.308 0.00 0.00 32.49 3.86
1470 2229 6.119240 TCAGATGAGAAACTTGATTCAGGT 57.881 37.500 0.00 0.00 0.00 4.00
1471 2230 5.936372 TCAGATGAGAAACTTGATTCAGGTG 59.064 40.000 1.78 0.00 0.00 4.00
1492 2251 6.322201 AGGTGATAGGCGAAAAATGATTCAAT 59.678 34.615 0.00 0.00 0.00 2.57
1493 2252 7.502226 AGGTGATAGGCGAAAAATGATTCAATA 59.498 33.333 0.00 0.00 0.00 1.90
1499 2309 7.205297 AGGCGAAAAATGATTCAATAGGATTG 58.795 34.615 0.00 0.00 0.00 2.67
1512 2322 6.454795 TCAATAGGATTGGTTTTTCACTTGC 58.545 36.000 0.00 0.00 0.00 4.01
1513 2323 6.041409 TCAATAGGATTGGTTTTTCACTTGCA 59.959 34.615 0.00 0.00 0.00 4.08
1538 2348 5.183904 GGCAATCAAGTGGATTAGTGAACTT 59.816 40.000 0.00 0.00 44.41 2.66
1549 2359 6.605594 TGGATTAGTGAACTTCCACTTTTTGT 59.394 34.615 1.71 0.00 44.32 2.83
1555 2365 5.516339 GTGAACTTCCACTTTTTGTCATGTG 59.484 40.000 0.00 0.00 34.38 3.21
1607 2429 6.150976 ACAAGTCAACTTTGATCACACTGAAA 59.849 34.615 0.00 0.00 39.73 2.69
1610 2432 5.739161 GTCAACTTTGATCACACTGAAACAC 59.261 40.000 0.00 0.00 39.73 3.32
1619 2441 2.609459 CACACTGAAACACACACTCTCC 59.391 50.000 0.00 0.00 0.00 3.71
1620 2442 2.213499 CACTGAAACACACACTCTCCC 58.787 52.381 0.00 0.00 0.00 4.30
1622 2449 2.158900 ACTGAAACACACACTCTCCCAG 60.159 50.000 0.00 0.00 0.00 4.45
1626 2453 0.469917 ACACACACTCTCCCAGTTGG 59.530 55.000 0.00 0.00 30.26 3.77
1627 2454 0.758734 CACACACTCTCCCAGTTGGA 59.241 55.000 0.00 0.00 42.41 3.53
1654 2481 9.543783 GTACTTTCTTCCTTGTCTCTAAGAAAA 57.456 33.333 9.57 0.00 43.54 2.29
1691 2542 4.202430 GGGTTGGTCAAAAGAAGAGGACTA 60.202 45.833 0.00 0.00 0.00 2.59
1701 2552 4.890499 AGAAGAGGACTAGATGGAAGGA 57.110 45.455 0.00 0.00 0.00 3.36
1703 2554 5.787327 AGAAGAGGACTAGATGGAAGGAAT 58.213 41.667 0.00 0.00 0.00 3.01
1707 2558 8.658840 AAGAGGACTAGATGGAAGGAATATAC 57.341 38.462 0.00 0.00 0.00 1.47
1708 2559 6.887545 AGAGGACTAGATGGAAGGAATATACG 59.112 42.308 0.00 0.00 0.00 3.06
1709 2560 5.952947 AGGACTAGATGGAAGGAATATACGG 59.047 44.000 0.00 0.00 0.00 4.02
1723 2574 7.061688 AGGAATATACGGTTACTCTTCAGTCT 58.938 38.462 0.00 0.00 33.62 3.24
1726 2577 7.876936 ATATACGGTTACTCTTCAGTCTTCA 57.123 36.000 0.00 0.00 33.62 3.02
1732 2583 5.409826 GGTTACTCTTCAGTCTTCAATGTGG 59.590 44.000 0.00 0.00 33.62 4.17
1758 2609 1.135286 TGACTGCTGAGCATACGTCTG 60.135 52.381 20.99 6.48 38.13 3.51
1767 2618 0.739813 GCATACGTCTGAAAGGGCGT 60.740 55.000 4.94 0.00 44.80 5.68
1769 2620 0.175073 ATACGTCTGAAAGGGCGTCC 59.825 55.000 0.00 0.00 42.67 4.79
1787 2638 5.297547 GCGTCCCATCTGATATTTCTGTAA 58.702 41.667 0.00 0.00 0.00 2.41
1788 2639 5.758296 GCGTCCCATCTGATATTTCTGTAAA 59.242 40.000 0.00 0.00 0.00 2.01
1789 2640 6.428159 GCGTCCCATCTGATATTTCTGTAAAT 59.572 38.462 0.00 0.00 38.80 1.40
1790 2641 7.602644 GCGTCCCATCTGATATTTCTGTAAATA 59.397 37.037 0.00 0.00 40.83 1.40
1791 2642 8.926710 CGTCCCATCTGATATTTCTGTAAATAC 58.073 37.037 0.00 0.00 39.71 1.89
1827 2678 8.674607 ACATTCTCGTAATTTTCTACATTTCCC 58.325 33.333 0.00 0.00 0.00 3.97
1836 2687 3.560636 TCTACATTTCCCCTGCTTAGC 57.439 47.619 0.00 0.00 0.00 3.09
1840 2691 1.064463 CATTTCCCCTGCTTAGCTCCA 60.064 52.381 5.60 0.00 0.00 3.86
1990 2846 4.771114 ATTGTAGGCTTGTAGGCATGTA 57.229 40.909 0.00 0.00 44.19 2.29
2006 2862 2.163818 TGTAGTACAGTGCTGGCAAC 57.836 50.000 0.58 0.00 34.19 4.17
2025 2881 3.703001 ACCTGCAAGCTAGTACATGTT 57.297 42.857 2.30 0.00 0.00 2.71
2026 2882 3.600388 ACCTGCAAGCTAGTACATGTTC 58.400 45.455 2.30 0.00 0.00 3.18
2027 2883 3.261897 ACCTGCAAGCTAGTACATGTTCT 59.738 43.478 2.30 7.00 0.00 3.01
2028 2884 3.620374 CCTGCAAGCTAGTACATGTTCTG 59.380 47.826 14.64 6.44 0.00 3.02
2029 2885 3.002791 TGCAAGCTAGTACATGTTCTGC 58.997 45.455 14.64 14.58 0.00 4.26
2030 2886 2.352960 GCAAGCTAGTACATGTTCTGCC 59.647 50.000 14.64 5.82 0.00 4.85
2031 2887 2.939103 CAAGCTAGTACATGTTCTGCCC 59.061 50.000 14.64 3.59 0.00 5.36
2032 2888 2.472029 AGCTAGTACATGTTCTGCCCT 58.528 47.619 14.64 5.61 0.00 5.19
2033 2889 2.840651 AGCTAGTACATGTTCTGCCCTT 59.159 45.455 14.64 0.00 0.00 3.95
2034 2890 2.939103 GCTAGTACATGTTCTGCCCTTG 59.061 50.000 14.64 0.39 0.00 3.61
2035 2891 2.496899 AGTACATGTTCTGCCCTTGG 57.503 50.000 2.30 0.00 0.00 3.61
2045 2901 3.752339 GCCCTTGGCCTTTCGCTG 61.752 66.667 3.32 0.00 44.06 5.18
2046 2902 2.034066 CCCTTGGCCTTTCGCTGA 59.966 61.111 3.32 0.00 37.74 4.26
2047 2903 2.042831 CCCTTGGCCTTTCGCTGAG 61.043 63.158 3.32 0.00 37.74 3.35
2048 2904 1.302832 CCTTGGCCTTTCGCTGAGT 60.303 57.895 3.32 0.00 37.74 3.41
2049 2905 0.036388 CCTTGGCCTTTCGCTGAGTA 60.036 55.000 3.32 0.00 37.74 2.59
2050 2906 1.363744 CTTGGCCTTTCGCTGAGTAG 58.636 55.000 3.32 0.00 37.74 2.57
2051 2907 0.685097 TTGGCCTTTCGCTGAGTAGT 59.315 50.000 3.32 0.00 37.74 2.73
2052 2908 1.552578 TGGCCTTTCGCTGAGTAGTA 58.447 50.000 3.32 0.00 37.74 1.82
2053 2909 2.108168 TGGCCTTTCGCTGAGTAGTAT 58.892 47.619 3.32 0.00 37.74 2.12
2054 2910 2.159099 TGGCCTTTCGCTGAGTAGTATG 60.159 50.000 3.32 0.00 37.74 2.39
2055 2911 2.159085 GGCCTTTCGCTGAGTAGTATGT 60.159 50.000 0.00 0.00 37.74 2.29
2056 2912 2.860735 GCCTTTCGCTGAGTAGTATGTG 59.139 50.000 0.00 0.00 0.00 3.21
2057 2913 3.676324 GCCTTTCGCTGAGTAGTATGTGT 60.676 47.826 0.00 0.00 0.00 3.72
2058 2914 3.859961 CCTTTCGCTGAGTAGTATGTGTG 59.140 47.826 0.00 0.00 0.00 3.82
2059 2915 2.561733 TCGCTGAGTAGTATGTGTGC 57.438 50.000 0.00 0.00 0.00 4.57
2060 2916 1.191944 CGCTGAGTAGTATGTGTGCG 58.808 55.000 0.00 0.00 36.41 5.34
2061 2917 1.202143 CGCTGAGTAGTATGTGTGCGA 60.202 52.381 0.00 0.00 44.02 5.10
2062 2918 2.186076 GCTGAGTAGTATGTGTGCGAC 58.814 52.381 0.00 0.00 0.00 5.19
2063 2919 2.415491 GCTGAGTAGTATGTGTGCGACA 60.415 50.000 0.00 0.00 39.53 4.35
2064 2920 3.833442 CTGAGTAGTATGTGTGCGACAA 58.167 45.455 0.00 0.00 38.36 3.18
2065 2921 3.833442 TGAGTAGTATGTGTGCGACAAG 58.167 45.455 0.00 0.00 38.36 3.16
2066 2922 3.254903 TGAGTAGTATGTGTGCGACAAGT 59.745 43.478 0.00 0.00 38.36 3.16
2067 2923 3.834610 AGTAGTATGTGTGCGACAAGTC 58.165 45.455 0.00 0.00 38.36 3.01
2068 2924 2.812358 AGTATGTGTGCGACAAGTCA 57.188 45.000 0.72 0.00 38.36 3.41
2069 2925 2.404215 AGTATGTGTGCGACAAGTCAC 58.596 47.619 0.72 0.00 38.36 3.67
2070 2926 2.131972 GTATGTGTGCGACAAGTCACA 58.868 47.619 0.72 0.00 43.30 3.58
2071 2927 1.220529 ATGTGTGCGACAAGTCACAG 58.779 50.000 0.72 0.00 43.01 3.66
2072 2928 0.108377 TGTGTGCGACAAGTCACAGT 60.108 50.000 0.72 0.00 43.01 3.55
2073 2929 1.135333 TGTGTGCGACAAGTCACAGTA 59.865 47.619 0.72 0.00 43.01 2.74
2074 2930 1.521423 GTGTGCGACAAGTCACAGTAC 59.479 52.381 0.72 0.00 43.01 2.73
2075 2931 1.135333 TGTGCGACAAGTCACAGTACA 59.865 47.619 0.00 0.00 38.18 2.90
2076 2932 1.521423 GTGCGACAAGTCACAGTACAC 59.479 52.381 0.00 0.00 33.63 2.90
2077 2933 1.135333 TGCGACAAGTCACAGTACACA 59.865 47.619 0.00 0.00 0.00 3.72
2078 2934 1.787155 GCGACAAGTCACAGTACACAG 59.213 52.381 0.00 0.00 0.00 3.66
2079 2935 2.798499 GCGACAAGTCACAGTACACAGT 60.798 50.000 0.00 0.00 0.00 3.55
2096 2952 8.042515 AGTACACAGTACTCTCTAAGGTTCTAG 58.957 40.741 4.09 0.00 0.00 2.43
2610 3466 1.009829 CTAGTGAGCGGGATTGTTGC 58.990 55.000 0.00 0.00 0.00 4.17
2626 3482 6.593382 GGATTGTTGCTGGTTATTTTGCATAA 59.407 34.615 0.00 0.00 35.27 1.90
2633 3489 7.891561 TGCTGGTTATTTTGCATAAAACTAGT 58.108 30.769 18.52 0.00 38.50 2.57
2639 3495 9.353999 GTTATTTTGCATAAAACTAGTTCCAGG 57.646 33.333 8.95 2.77 38.50 4.45
2640 3496 5.385509 TTTGCATAAAACTAGTTCCAGGC 57.614 39.130 8.95 12.97 0.00 4.85
2643 3499 4.261801 GCATAAAACTAGTTCCAGGCTCA 58.738 43.478 8.95 0.00 0.00 4.26
2688 3546 0.670546 ATTGGAAGTGCACCTCGACG 60.671 55.000 14.63 0.00 0.00 5.12
2690 3548 2.649034 GAAGTGCACCTCGACGGA 59.351 61.111 14.63 0.00 36.31 4.69
2743 3601 8.741841 AGAGTACACATCTTCTTAGACTTTACC 58.258 37.037 0.00 0.00 31.99 2.85
2784 3643 5.010820 TGTCCAACATTTCATTTCATCTGCA 59.989 36.000 0.00 0.00 0.00 4.41
2841 3700 0.467290 GAAAGCCTGTGTGGGGAACA 60.467 55.000 0.00 0.00 36.04 3.18
3163 4038 7.028926 TGTACAATAATGTGAACCACGTTTT 57.971 32.000 9.46 0.48 40.16 2.43
3456 4334 1.527034 TCTTGCTGAACCAGATGTGC 58.473 50.000 0.00 0.00 32.44 4.57
3755 4634 3.119531 CCACGGCATGTCATGTATTTTGT 60.120 43.478 14.26 2.18 0.00 2.83
3834 4713 2.746362 GCTTCTTCTTGGACATGGACAG 59.254 50.000 0.00 0.00 0.00 3.51
3859 4738 0.749454 CCCATCCAAAGGCCTTCTCG 60.749 60.000 20.79 10.49 0.00 4.04
3981 4860 6.385649 AGTCTGCCGAACATTTAAGAAAAA 57.614 33.333 0.00 0.00 0.00 1.94
3982 4861 6.438763 AGTCTGCCGAACATTTAAGAAAAAG 58.561 36.000 0.00 0.00 0.00 2.27
4006 4885 9.893305 AAGAAATAACTAAGTTTTGGTCATTCG 57.107 29.630 0.00 0.00 0.00 3.34
4142 5021 8.223769 CAGTTGAATACAAGTCAATACACACTC 58.776 37.037 0.00 0.00 37.54 3.51
4143 5022 8.150945 AGTTGAATACAAGTCAATACACACTCT 58.849 33.333 0.00 0.00 37.34 3.24
4200 5116 7.062605 ACACATTTTTCGTCTGGTTATAGTACG 59.937 37.037 0.00 0.00 34.99 3.67
4246 5162 0.176680 AGCAGCAGGAGGAATGTACG 59.823 55.000 0.00 0.00 0.00 3.67
4248 5164 1.927895 CAGCAGGAGGAATGTACGAC 58.072 55.000 0.00 0.00 0.00 4.34
4260 5176 3.735237 ATGTACGACTCCTGGCTTATG 57.265 47.619 0.00 0.00 0.00 1.90
4265 5183 3.751518 ACGACTCCTGGCTTATGTTTTT 58.248 40.909 0.00 0.00 0.00 1.94
4267 5185 4.003648 CGACTCCTGGCTTATGTTTTTCT 58.996 43.478 0.00 0.00 0.00 2.52
4268 5186 4.142816 CGACTCCTGGCTTATGTTTTTCTG 60.143 45.833 0.00 0.00 0.00 3.02
4322 5240 3.181445 ACTTAATTCACTGGCCTCACACA 60.181 43.478 3.32 0.00 0.00 3.72
4331 5249 1.133823 TGGCCTCACACAACACATCTT 60.134 47.619 3.32 0.00 0.00 2.40
4332 5250 1.956477 GGCCTCACACAACACATCTTT 59.044 47.619 0.00 0.00 0.00 2.52
4333 5251 2.362077 GGCCTCACACAACACATCTTTT 59.638 45.455 0.00 0.00 0.00 2.27
4334 5252 3.181476 GGCCTCACACAACACATCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
4364 5282 3.408288 TTTTGAACACAGTACCAACGC 57.592 42.857 0.00 0.00 0.00 4.84
4365 5283 2.025589 TTGAACACAGTACCAACGCA 57.974 45.000 0.00 0.00 0.00 5.24
4366 5284 2.025589 TGAACACAGTACCAACGCAA 57.974 45.000 0.00 0.00 0.00 4.85
4367 5285 2.357075 TGAACACAGTACCAACGCAAA 58.643 42.857 0.00 0.00 0.00 3.68
4368 5286 2.096174 TGAACACAGTACCAACGCAAAC 59.904 45.455 0.00 0.00 0.00 2.93
4382 5300 2.350616 CGCAAACGTTCATATGTACGC 58.649 47.619 28.06 14.75 41.51 4.42
4383 5301 2.350616 GCAAACGTTCATATGTACGCG 58.649 47.619 28.06 19.59 41.51 6.01
4384 5302 2.350616 CAAACGTTCATATGTACGCGC 58.649 47.619 28.06 0.00 41.51 6.86
4385 5303 1.631284 AACGTTCATATGTACGCGCA 58.369 45.000 28.06 0.00 41.51 6.09
4386 5304 1.847818 ACGTTCATATGTACGCGCAT 58.152 45.000 28.06 11.27 41.51 4.73
4387 5305 3.002708 ACGTTCATATGTACGCGCATA 57.997 42.857 28.06 7.53 41.51 3.14
4388 5306 2.722629 ACGTTCATATGTACGCGCATAC 59.277 45.455 28.06 6.70 41.51 2.39
4389 5307 2.722116 CGTTCATATGTACGCGCATACA 59.278 45.455 19.51 19.51 39.35 2.29
4390 5308 3.420035 CGTTCATATGTACGCGCATACAC 60.420 47.826 19.62 4.03 37.88 2.90
4391 5309 3.636282 TCATATGTACGCGCATACACT 57.364 42.857 19.62 10.64 37.88 3.55
4392 5310 3.561503 TCATATGTACGCGCATACACTC 58.438 45.455 19.62 0.00 37.88 3.51
4393 5311 3.003897 TCATATGTACGCGCATACACTCA 59.996 43.478 19.62 7.64 37.88 3.41
4394 5312 1.556564 ATGTACGCGCATACACTCAC 58.443 50.000 19.62 0.00 37.88 3.51
4395 5313 0.457166 TGTACGCGCATACACTCACC 60.457 55.000 13.00 0.00 29.97 4.02
4396 5314 1.140161 TACGCGCATACACTCACCC 59.860 57.895 5.73 0.00 0.00 4.61
4397 5315 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
4398 5316 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
4399 5317 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
4400 5318 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
4401 5319 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
4402 5320 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
4403 5321 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
4404 5322 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
4405 5323 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
4406 5324 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
4407 5325 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
4408 5326 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
4409 5327 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
4410 5328 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
4411 5329 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
4412 5330 0.398696 ACCCCTATGAACGCACACAA 59.601 50.000 0.00 0.00 0.00 3.33
4421 5339 2.887783 TGAACGCACACAAACCCAATAT 59.112 40.909 0.00 0.00 0.00 1.28
4422 5340 3.241701 GAACGCACACAAACCCAATATG 58.758 45.455 0.00 0.00 0.00 1.78
4431 5349 7.546358 CACACAAACCCAATATGTCATACAAT 58.454 34.615 0.00 0.00 0.00 2.71
4435 5353 7.833682 ACAAACCCAATATGTCATACAATGAGA 59.166 33.333 0.00 0.00 40.53 3.27
4439 5357 7.716998 ACCCAATATGTCATACAATGAGAGAAC 59.283 37.037 0.00 0.00 40.53 3.01
4446 5365 5.625721 GTCATACAATGAGAGAACCGTATCG 59.374 44.000 0.00 0.00 40.53 2.92
4464 5383 6.669278 CGTATCGGATACCATACCTGATATG 58.331 44.000 19.61 0.00 40.52 1.78
4466 5385 7.443272 CGTATCGGATACCATACCTGATATGTA 59.557 40.741 19.61 0.00 39.36 2.29
4467 5386 9.298250 GTATCGGATACCATACCTGATATGTAT 57.702 37.037 15.73 0.00 39.36 2.29
4468 5387 7.582667 TCGGATACCATACCTGATATGTATG 57.417 40.000 0.00 0.00 43.27 2.39
4469 5388 6.040504 TCGGATACCATACCTGATATGTATGC 59.959 42.308 5.16 0.00 42.63 3.14
4471 5390 7.471959 CGGATACCATACCTGATATGTATGCAT 60.472 40.741 3.79 3.79 42.63 3.96
4472 5391 7.875041 GGATACCATACCTGATATGTATGCATC 59.125 40.741 0.19 8.75 42.63 3.91
4473 5392 5.664457 ACCATACCTGATATGTATGCATCG 58.336 41.667 0.19 0.00 42.63 3.84
4476 5395 6.406288 CCATACCTGATATGTATGCATCGAGT 60.406 42.308 0.19 0.00 42.63 4.18
4477 5396 7.201821 CCATACCTGATATGTATGCATCGAGTA 60.202 40.741 0.19 0.00 42.63 2.59
4479 5398 7.175347 ACCTGATATGTATGCATCGAGTATT 57.825 36.000 0.19 0.00 36.58 1.89
4480 5399 7.038048 ACCTGATATGTATGCATCGAGTATTG 58.962 38.462 0.19 0.00 36.58 1.90
4481 5400 6.478016 CCTGATATGTATGCATCGAGTATTGG 59.522 42.308 0.19 0.00 36.58 3.16
4482 5401 6.935167 TGATATGTATGCATCGAGTATTGGT 58.065 36.000 0.19 0.00 36.58 3.67
4483 5402 8.062065 TGATATGTATGCATCGAGTATTGGTA 57.938 34.615 0.19 0.00 36.58 3.25
4484 5403 8.527810 TGATATGTATGCATCGAGTATTGGTAA 58.472 33.333 0.19 0.00 36.58 2.85
4485 5404 9.366216 GATATGTATGCATCGAGTATTGGTAAA 57.634 33.333 0.19 0.00 36.58 2.01
4486 5405 9.890629 ATATGTATGCATCGAGTATTGGTAAAT 57.109 29.630 0.19 0.00 36.58 1.40
4488 5407 9.719355 ATGTATGCATCGAGTATTGGTAAATAA 57.281 29.630 0.19 0.00 30.04 1.40
4489 5408 9.549078 TGTATGCATCGAGTATTGGTAAATAAA 57.451 29.630 0.19 0.00 30.04 1.40
4490 5409 9.807386 GTATGCATCGAGTATTGGTAAATAAAC 57.193 33.333 0.19 0.00 30.04 2.01
4491 5410 7.851387 TGCATCGAGTATTGGTAAATAAACA 57.149 32.000 0.00 0.00 30.04 2.83
4492 5411 8.270080 TGCATCGAGTATTGGTAAATAAACAA 57.730 30.769 0.00 0.00 30.04 2.83
4493 5412 8.731605 TGCATCGAGTATTGGTAAATAAACAAA 58.268 29.630 0.00 0.00 30.04 2.83
4494 5413 9.730420 GCATCGAGTATTGGTAAATAAACAAAT 57.270 29.630 0.00 0.00 30.04 2.32
4514 5433 9.719355 AACAAATAAACATAATTCTTTCCCACC 57.281 29.630 0.00 0.00 0.00 4.61
4515 5434 9.100197 ACAAATAAACATAATTCTTTCCCACCT 57.900 29.630 0.00 0.00 0.00 4.00
4516 5435 9.942850 CAAATAAACATAATTCTTTCCCACCTT 57.057 29.630 0.00 0.00 0.00 3.50
4517 5436 9.942850 AAATAAACATAATTCTTTCCCACCTTG 57.057 29.630 0.00 0.00 0.00 3.61
4518 5437 8.893563 ATAAACATAATTCTTTCCCACCTTGA 57.106 30.769 0.00 0.00 0.00 3.02
4519 5438 7.797121 AAACATAATTCTTTCCCACCTTGAT 57.203 32.000 0.00 0.00 0.00 2.57
4520 5439 8.893563 AAACATAATTCTTTCCCACCTTGATA 57.106 30.769 0.00 0.00 0.00 2.15
4521 5440 7.881775 ACATAATTCTTTCCCACCTTGATAC 57.118 36.000 0.00 0.00 0.00 2.24
4522 5441 7.643123 ACATAATTCTTTCCCACCTTGATACT 58.357 34.615 0.00 0.00 0.00 2.12
4523 5442 8.116026 ACATAATTCTTTCCCACCTTGATACTT 58.884 33.333 0.00 0.00 0.00 2.24
4524 5443 6.840780 AATTCTTTCCCACCTTGATACTTG 57.159 37.500 0.00 0.00 0.00 3.16
4525 5444 3.686016 TCTTTCCCACCTTGATACTTGC 58.314 45.455 0.00 0.00 0.00 4.01
4526 5445 2.507407 TTCCCACCTTGATACTTGCC 57.493 50.000 0.00 0.00 0.00 4.52
4527 5446 1.668826 TCCCACCTTGATACTTGCCT 58.331 50.000 0.00 0.00 0.00 4.75
4528 5447 2.840511 TCCCACCTTGATACTTGCCTA 58.159 47.619 0.00 0.00 0.00 3.93
4529 5448 3.186283 TCCCACCTTGATACTTGCCTAA 58.814 45.455 0.00 0.00 0.00 2.69
4530 5449 3.785887 TCCCACCTTGATACTTGCCTAAT 59.214 43.478 0.00 0.00 0.00 1.73
4531 5450 4.972568 TCCCACCTTGATACTTGCCTAATA 59.027 41.667 0.00 0.00 0.00 0.98
4532 5451 5.063880 CCCACCTTGATACTTGCCTAATAC 58.936 45.833 0.00 0.00 0.00 1.89
4533 5452 5.063880 CCACCTTGATACTTGCCTAATACC 58.936 45.833 0.00 0.00 0.00 2.73
4534 5453 5.163195 CCACCTTGATACTTGCCTAATACCT 60.163 44.000 0.00 0.00 0.00 3.08
4535 5454 5.760253 CACCTTGATACTTGCCTAATACCTG 59.240 44.000 0.00 0.00 0.00 4.00
4536 5455 5.428783 ACCTTGATACTTGCCTAATACCTGT 59.571 40.000 0.00 0.00 0.00 4.00
4537 5456 6.614087 ACCTTGATACTTGCCTAATACCTGTA 59.386 38.462 0.00 0.00 0.00 2.74
4538 5457 7.155328 CCTTGATACTTGCCTAATACCTGTAG 58.845 42.308 0.00 0.00 0.00 2.74
4539 5458 6.665992 TGATACTTGCCTAATACCTGTAGG 57.334 41.667 0.00 0.00 41.08 3.18
4554 5473 5.776173 CCTGTAGGTATGTTTCGATCTCT 57.224 43.478 0.00 0.00 0.00 3.10
4555 5474 6.150396 CCTGTAGGTATGTTTCGATCTCTT 57.850 41.667 0.00 0.00 0.00 2.85
4556 5475 7.273320 CCTGTAGGTATGTTTCGATCTCTTA 57.727 40.000 0.00 0.00 0.00 2.10
4557 5476 7.364200 CCTGTAGGTATGTTTCGATCTCTTAG 58.636 42.308 0.00 0.00 0.00 2.18
4558 5477 7.273320 TGTAGGTATGTTTCGATCTCTTAGG 57.727 40.000 0.00 0.00 0.00 2.69
4559 5478 5.793030 AGGTATGTTTCGATCTCTTAGGG 57.207 43.478 0.00 0.00 0.00 3.53
4560 5479 4.039366 AGGTATGTTTCGATCTCTTAGGGC 59.961 45.833 0.00 0.00 0.00 5.19
4561 5480 4.202223 GGTATGTTTCGATCTCTTAGGGCA 60.202 45.833 0.00 0.00 0.00 5.36
4562 5481 4.696479 ATGTTTCGATCTCTTAGGGCAT 57.304 40.909 0.00 0.00 0.00 4.40
4563 5482 4.060038 TGTTTCGATCTCTTAGGGCATC 57.940 45.455 0.00 0.00 0.00 3.91
4564 5483 3.706594 TGTTTCGATCTCTTAGGGCATCT 59.293 43.478 0.00 0.00 0.00 2.90
4565 5484 4.202161 TGTTTCGATCTCTTAGGGCATCTC 60.202 45.833 0.00 0.00 0.00 2.75
4566 5485 3.517296 TCGATCTCTTAGGGCATCTCT 57.483 47.619 0.00 0.00 0.00 3.10
4567 5486 4.642466 TCGATCTCTTAGGGCATCTCTA 57.358 45.455 0.00 0.00 0.00 2.43
4568 5487 4.584874 TCGATCTCTTAGGGCATCTCTAG 58.415 47.826 0.00 0.00 0.00 2.43
4569 5488 3.128589 CGATCTCTTAGGGCATCTCTAGC 59.871 52.174 0.00 0.00 0.00 3.42
4570 5489 2.509569 TCTCTTAGGGCATCTCTAGCG 58.490 52.381 0.00 0.00 0.00 4.26
4571 5490 1.543802 CTCTTAGGGCATCTCTAGCGG 59.456 57.143 0.00 0.00 0.00 5.52
4572 5491 1.145119 TCTTAGGGCATCTCTAGCGGA 59.855 52.381 0.00 0.00 0.00 5.54
4573 5492 1.964223 CTTAGGGCATCTCTAGCGGAA 59.036 52.381 0.00 0.00 0.00 4.30
4574 5493 1.329256 TAGGGCATCTCTAGCGGAAC 58.671 55.000 0.00 0.00 0.00 3.62
4600 5519 2.721425 AACGGGTTGACTCCTCAAAA 57.279 45.000 0.00 0.00 38.17 2.44
4604 5523 3.581332 ACGGGTTGACTCCTCAAAAGATA 59.419 43.478 0.00 0.00 38.17 1.98
4661 5583 6.954352 ACTCTCTAGTTTAACCCCTCAAAT 57.046 37.500 0.00 0.00 29.00 2.32
4684 5606 1.520342 GAGGAGATGTGTCAGCCGC 60.520 63.158 0.00 0.00 0.00 6.53
4689 5611 1.520342 GATGTGTCAGCCGCCTCTC 60.520 63.158 0.00 0.00 0.00 3.20
4725 5647 4.539870 CGAAAAGCAATCTCAGCAAAAGA 58.460 39.130 0.00 0.00 0.00 2.52
4728 5650 6.183359 CGAAAAGCAATCTCAGCAAAAGATTC 60.183 38.462 5.55 2.93 40.61 2.52
4744 5666 3.976490 TTCCCTCCCCTCGTGCGAT 62.976 63.158 0.00 0.00 0.00 4.58
4746 5668 4.271816 CCTCCCCTCGTGCGATCG 62.272 72.222 11.69 11.69 0.00 3.69
4753 5675 4.847516 TCGTGCGATCGCCTTCCG 62.848 66.667 35.12 28.40 41.09 4.30
4766 5688 3.253061 TTCCGATGGCCACCCACA 61.253 61.111 8.16 0.00 45.77 4.17
4768 5690 4.033776 CCGATGGCCACCCACACT 62.034 66.667 8.16 0.00 45.77 3.55
4769 5691 2.034066 CGATGGCCACCCACACTT 59.966 61.111 8.16 0.00 45.77 3.16
4770 5692 1.603455 CGATGGCCACCCACACTTT 60.603 57.895 8.16 0.00 45.77 2.66
4772 5694 1.228862 ATGGCCACCCACACTTTCC 60.229 57.895 8.16 0.00 45.77 3.13
4773 5695 2.600470 GGCCACCCACACTTTCCC 60.600 66.667 0.00 0.00 0.00 3.97
4774 5696 2.197324 GCCACCCACACTTTCCCA 59.803 61.111 0.00 0.00 0.00 4.37
4775 5697 2.200337 GCCACCCACACTTTCCCAC 61.200 63.158 0.00 0.00 0.00 4.61
4776 5698 1.536676 CCACCCACACTTTCCCACT 59.463 57.895 0.00 0.00 0.00 4.00
4778 5700 0.474184 CACCCACACTTTCCCACTCT 59.526 55.000 0.00 0.00 0.00 3.24
4780 5702 1.143073 ACCCACACTTTCCCACTCTTC 59.857 52.381 0.00 0.00 0.00 2.87
4790 5742 2.286523 CCACTCTTCTCGGCACCCT 61.287 63.158 0.00 0.00 0.00 4.34
4811 5763 2.955881 CGACCTCCCACCCCACTTC 61.956 68.421 0.00 0.00 0.00 3.01
4848 5800 2.819595 GCCGCCAGCTGAAATCGA 60.820 61.111 17.39 0.00 38.99 3.59
4861 5813 3.761657 TGAAATCGATGCATCAAGTTGC 58.238 40.909 25.70 15.14 43.07 4.17
4868 5820 1.445582 GCATCAAGTTGCTGCAGCC 60.446 57.895 34.64 20.80 39.14 4.85
4869 5821 1.154093 CATCAAGTTGCTGCAGCCG 60.154 57.895 34.64 17.83 41.18 5.52
4870 5822 1.601759 ATCAAGTTGCTGCAGCCGT 60.602 52.632 34.64 16.43 41.18 5.68
4871 5823 1.174712 ATCAAGTTGCTGCAGCCGTT 61.175 50.000 34.64 21.74 41.18 4.44
4872 5824 1.659335 CAAGTTGCTGCAGCCGTTG 60.659 57.895 34.64 27.68 41.18 4.10
4873 5825 1.823470 AAGTTGCTGCAGCCGTTGA 60.823 52.632 34.64 14.24 41.18 3.18
4874 5826 1.383456 AAGTTGCTGCAGCCGTTGAA 61.383 50.000 34.64 19.58 41.18 2.69
4875 5827 1.065600 GTTGCTGCAGCCGTTGAAA 59.934 52.632 34.64 18.83 41.18 2.69
4876 5828 0.318955 GTTGCTGCAGCCGTTGAAAT 60.319 50.000 34.64 0.00 41.18 2.17
4877 5829 1.068610 GTTGCTGCAGCCGTTGAAATA 60.069 47.619 34.64 11.00 41.18 1.40
4878 5830 0.804364 TGCTGCAGCCGTTGAAATAG 59.196 50.000 34.64 0.00 41.18 1.73
4879 5831 1.086696 GCTGCAGCCGTTGAAATAGA 58.913 50.000 28.76 0.00 34.31 1.98
4880 5832 1.672881 GCTGCAGCCGTTGAAATAGAT 59.327 47.619 28.76 0.00 34.31 1.98
4881 5833 2.540361 GCTGCAGCCGTTGAAATAGATG 60.540 50.000 28.76 0.00 34.31 2.90
4882 5834 1.401552 TGCAGCCGTTGAAATAGATGC 59.598 47.619 0.00 0.00 0.00 3.91
4883 5835 1.401552 GCAGCCGTTGAAATAGATGCA 59.598 47.619 0.00 0.00 32.79 3.96
4884 5836 2.033801 GCAGCCGTTGAAATAGATGCAT 59.966 45.455 0.00 0.00 32.79 3.96
4885 5837 3.851105 GCAGCCGTTGAAATAGATGCATC 60.851 47.826 19.37 19.37 32.79 3.91
4886 5838 3.313249 CAGCCGTTGAAATAGATGCATCA 59.687 43.478 27.81 14.42 0.00 3.07
4887 5839 3.947196 AGCCGTTGAAATAGATGCATCAA 59.053 39.130 27.81 11.59 0.00 2.57
4888 5840 4.036027 AGCCGTTGAAATAGATGCATCAAG 59.964 41.667 27.81 8.02 32.85 3.02
4889 5841 4.201950 GCCGTTGAAATAGATGCATCAAGT 60.202 41.667 27.81 10.67 32.85 3.16
4890 5842 5.677091 GCCGTTGAAATAGATGCATCAAGTT 60.677 40.000 27.81 17.20 32.85 2.66
4891 5843 5.740569 CCGTTGAAATAGATGCATCAAGTTG 59.259 40.000 27.81 8.50 32.85 3.16
4892 5844 5.228635 CGTTGAAATAGATGCATCAAGTTGC 59.771 40.000 27.81 17.06 43.07 4.17
4893 5845 4.912214 TGAAATAGATGCATCAAGTTGCG 58.088 39.130 27.81 0.00 45.77 4.85
4894 5846 3.976793 AATAGATGCATCAAGTTGCGG 57.023 42.857 27.81 0.00 45.77 5.69
4895 5847 1.016627 TAGATGCATCAAGTTGCGGC 58.983 50.000 27.81 10.53 45.77 6.53
4896 5848 0.961857 AGATGCATCAAGTTGCGGCA 60.962 50.000 27.81 19.12 45.77 5.69
4897 5849 0.109179 GATGCATCAAGTTGCGGCAA 60.109 50.000 21.92 12.11 45.77 4.52
4898 5850 0.108992 ATGCATCAAGTTGCGGCAAG 60.109 50.000 16.97 4.80 45.77 4.01
4926 5878 0.310543 TTGACACATCAAGTTGCCGC 59.689 50.000 0.00 0.00 40.01 6.53
4927 5879 1.154413 GACACATCAAGTTGCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
4928 5880 2.176546 CACATCAAGTTGCCGCGG 59.823 61.111 24.05 24.05 0.00 6.46
4929 5881 3.737172 ACATCAAGTTGCCGCGGC 61.737 61.111 42.35 42.35 42.35 6.53
4930 5882 4.481112 CATCAAGTTGCCGCGGCC 62.481 66.667 44.42 31.00 41.09 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.695147 TCTCGGCATCATTTCTAGCTGA 59.305 45.455 0.00 0.00 39.85 4.26
43 44 1.821332 GCTCCAAATGCCCTCTCGG 60.821 63.158 0.00 0.00 0.00 4.63
61 62 1.203994 CTGCAAAATGGGCCTGAAGAG 59.796 52.381 4.53 0.00 0.00 2.85
73 74 2.223711 GGTCCACGAACAACTGCAAAAT 60.224 45.455 0.00 0.00 0.00 1.82
98 99 5.096443 AGGTCTCCAGATCTCATTGTTTC 57.904 43.478 0.00 0.00 26.79 2.78
107 108 1.079490 TCCCACAAGGTCTCCAGATCT 59.921 52.381 0.00 0.00 37.02 2.75
149 151 1.067495 TCGACGACCATGTTGTGCATA 60.067 47.619 0.00 0.00 35.74 3.14
206 208 4.103153 TGGATAAGATCACCCATGTTCTCC 59.897 45.833 0.00 0.00 34.40 3.71
223 225 5.646360 GGATTCTGTTTCGGAAGTTGGATAA 59.354 40.000 0.00 0.00 31.92 1.75
237 239 3.896888 TCAAATGTGGCAGGATTCTGTTT 59.103 39.130 2.16 0.00 42.78 2.83
239 241 3.087031 CTCAAATGTGGCAGGATTCTGT 58.913 45.455 2.16 0.00 42.78 3.41
248 250 5.076182 TGAATAAACTCCTCAAATGTGGCA 58.924 37.500 0.00 0.00 0.00 4.92
290 293 1.271325 TGCTCGTGAATTGGTCCATGT 60.271 47.619 0.00 0.00 0.00 3.21
294 297 0.674895 AGCTGCTCGTGAATTGGTCC 60.675 55.000 0.00 0.00 0.00 4.46
301 304 0.392706 TTCCTTCAGCTGCTCGTGAA 59.607 50.000 9.47 0.48 0.00 3.18
347 350 4.230455 TCCCAACATCATTGTCCCTTTTT 58.770 39.130 0.00 0.00 34.06 1.94
351 354 2.312741 ACATCCCAACATCATTGTCCCT 59.687 45.455 0.00 0.00 34.06 4.20
360 364 7.775120 AGTTCAAATATTCACATCCCAACATC 58.225 34.615 0.00 0.00 0.00 3.06
406 411 2.677836 ACGTTCAAATAGTCGCATGCAT 59.322 40.909 19.57 5.35 0.00 3.96
415 420 5.431179 AAGGGGACATACGTTCAAATAGT 57.569 39.130 0.00 0.00 0.00 2.12
448 453 4.395959 TCCTAATCCGCACGATTAAGTT 57.604 40.909 0.00 0.00 41.80 2.66
479 485 3.353557 TGTAGTCGCATACTCTGGTCTT 58.646 45.455 0.00 0.00 39.80 3.01
483 489 3.439293 CAACTGTAGTCGCATACTCTGG 58.561 50.000 0.00 0.00 39.80 3.86
484 490 3.128764 TCCAACTGTAGTCGCATACTCTG 59.871 47.826 0.00 0.00 39.80 3.35
486 492 3.777465 TCCAACTGTAGTCGCATACTC 57.223 47.619 0.00 0.00 39.80 2.59
487 493 3.699538 TCATCCAACTGTAGTCGCATACT 59.300 43.478 0.00 0.00 42.62 2.12
524 534 4.161189 CAGAGGGATCAGTATGTGAACACT 59.839 45.833 6.51 0.00 44.15 3.55
529 539 3.300388 GGTCAGAGGGATCAGTATGTGA 58.700 50.000 0.00 0.00 40.38 3.58
534 544 1.015609 TGGGGTCAGAGGGATCAGTA 58.984 55.000 0.00 0.00 0.00 2.74
539 549 1.562672 CCGTTTGGGGTCAGAGGGAT 61.563 60.000 0.00 0.00 35.73 3.85
544 555 1.002624 GCATCCGTTTGGGGTCAGA 60.003 57.895 0.00 0.00 36.01 3.27
548 560 4.733542 CCCGCATCCGTTTGGGGT 62.734 66.667 14.27 0.00 45.65 4.95
551 563 0.748005 AATCTCCCGCATCCGTTTGG 60.748 55.000 0.00 0.00 0.00 3.28
583 595 5.512232 CCTCTCCTAAGGGCATCTTCAATAC 60.512 48.000 0.00 0.00 36.93 1.89
605 617 2.691732 CCCATTCCCATGCCACCT 59.308 61.111 0.00 0.00 0.00 4.00
606 618 2.444517 CCCCATTCCCATGCCACC 60.445 66.667 0.00 0.00 0.00 4.61
607 619 3.156556 GCCCCATTCCCATGCCAC 61.157 66.667 0.00 0.00 0.00 5.01
608 620 4.478796 GGCCCCATTCCCATGCCA 62.479 66.667 0.00 0.00 41.76 4.92
611 623 3.797507 CTCCGGCCCCATTCCCATG 62.798 68.421 0.00 0.00 0.00 3.66
612 624 3.501911 CTCCGGCCCCATTCCCAT 61.502 66.667 0.00 0.00 0.00 4.00
635 647 2.189521 CCGGAAATCCCCTCCACG 59.810 66.667 0.00 0.00 32.77 4.94
645 657 0.550914 TAGCTCATTGGGCCGGAAAT 59.449 50.000 5.05 0.00 0.00 2.17
649 661 1.524621 CACTAGCTCATTGGGCCGG 60.525 63.158 4.51 0.00 0.00 6.13
651 663 0.179034 CCTCACTAGCTCATTGGGCC 60.179 60.000 4.51 0.00 0.00 5.80
870 884 2.124695 GACGATGGAAGGGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
871 885 0.255890 ATTGACGATGGAAGGGGTGG 59.744 55.000 0.00 0.00 0.00 4.61
873 887 1.489230 GGTATTGACGATGGAAGGGGT 59.511 52.381 0.00 0.00 0.00 4.95
878 892 0.179067 GCCGGGTATTGACGATGGAA 60.179 55.000 2.18 0.00 0.00 3.53
879 893 1.331399 TGCCGGGTATTGACGATGGA 61.331 55.000 2.18 0.00 0.00 3.41
981 1584 2.444140 GCTCCCCCGCCTCTCTAA 60.444 66.667 0.00 0.00 0.00 2.10
1154 1802 2.153401 CACCTCCACCCCCTTCACA 61.153 63.158 0.00 0.00 0.00 3.58
1303 1951 7.259290 TGACAGAAATGTAAGTTCAGGTTTC 57.741 36.000 0.00 0.00 44.66 2.78
1327 2033 6.720112 ATTTTGCAGTACTTGATATGCCAT 57.280 33.333 0.00 0.00 37.89 4.40
1337 2043 6.042143 CACTTGAACCAATTTTGCAGTACTT 58.958 36.000 0.00 0.00 0.00 2.24
1360 2066 6.730447 TCCTCAAGTGGATAATCAATTTCCA 58.270 36.000 0.00 0.00 37.20 3.53
1361 2067 7.503566 TCATCCTCAAGTGGATAATCAATTTCC 59.496 37.037 3.56 0.00 44.38 3.13
1362 2068 8.455903 TCATCCTCAAGTGGATAATCAATTTC 57.544 34.615 3.56 0.00 44.38 2.17
1363 2069 8.277197 TCTCATCCTCAAGTGGATAATCAATTT 58.723 33.333 3.56 0.00 44.38 1.82
1364 2070 7.809238 TCTCATCCTCAAGTGGATAATCAATT 58.191 34.615 3.56 0.00 44.38 2.32
1365 2071 7.384524 TCTCATCCTCAAGTGGATAATCAAT 57.615 36.000 3.56 0.00 44.38 2.57
1367 2073 6.813293 TTCTCATCCTCAAGTGGATAATCA 57.187 37.500 3.56 0.00 44.38 2.57
1368 2074 7.278875 AGTTTCTCATCCTCAAGTGGATAATC 58.721 38.462 3.56 0.00 44.38 1.75
1370 2076 6.627087 AGTTTCTCATCCTCAAGTGGATAA 57.373 37.500 3.56 0.00 44.38 1.75
1371 2077 6.325028 CCTAGTTTCTCATCCTCAAGTGGATA 59.675 42.308 3.56 0.00 44.38 2.59
1372 2078 5.130145 CCTAGTTTCTCATCCTCAAGTGGAT 59.870 44.000 0.00 0.00 46.91 3.41
1375 2081 5.413309 ACCTAGTTTCTCATCCTCAAGTG 57.587 43.478 0.00 0.00 0.00 3.16
1378 2084 5.046304 CCTGAACCTAGTTTCTCATCCTCAA 60.046 44.000 1.45 0.00 0.00 3.02
1381 2140 4.223923 CACCTGAACCTAGTTTCTCATCCT 59.776 45.833 1.45 0.00 0.00 3.24
1382 2141 4.223032 TCACCTGAACCTAGTTTCTCATCC 59.777 45.833 1.45 0.00 0.00 3.51
1428 2187 0.605589 AACCTAGTTTCGCCTGTGGC 60.606 55.000 0.00 0.00 46.75 5.01
1430 2189 2.069273 CTGAACCTAGTTTCGCCTGTG 58.931 52.381 0.00 0.00 0.00 3.66
1431 2190 1.968493 TCTGAACCTAGTTTCGCCTGT 59.032 47.619 0.00 0.00 0.00 4.00
1433 2192 2.832129 TCATCTGAACCTAGTTTCGCCT 59.168 45.455 0.00 0.00 0.00 5.52
1434 2193 3.119101 TCTCATCTGAACCTAGTTTCGCC 60.119 47.826 0.00 0.00 0.00 5.54
1435 2194 4.111375 TCTCATCTGAACCTAGTTTCGC 57.889 45.455 0.00 0.00 0.00 4.70
1436 2195 6.159988 AGTTTCTCATCTGAACCTAGTTTCG 58.840 40.000 0.00 0.00 0.00 3.46
1437 2196 7.657761 TCAAGTTTCTCATCTGAACCTAGTTTC 59.342 37.037 0.00 0.00 0.00 2.78
1438 2197 7.509546 TCAAGTTTCTCATCTGAACCTAGTTT 58.490 34.615 0.00 0.00 0.00 2.66
1439 2198 7.067496 TCAAGTTTCTCATCTGAACCTAGTT 57.933 36.000 0.00 0.00 0.00 2.24
1440 2199 6.672266 TCAAGTTTCTCATCTGAACCTAGT 57.328 37.500 0.00 0.00 0.00 2.57
1441 2200 7.821359 TGAATCAAGTTTCTCATCTGAACCTAG 59.179 37.037 0.00 0.00 0.00 3.02
1442 2201 7.679783 TGAATCAAGTTTCTCATCTGAACCTA 58.320 34.615 0.00 0.00 0.00 3.08
1443 2202 6.537355 TGAATCAAGTTTCTCATCTGAACCT 58.463 36.000 0.00 0.00 0.00 3.50
1444 2203 6.128063 CCTGAATCAAGTTTCTCATCTGAACC 60.128 42.308 0.00 0.00 0.00 3.62
1445 2204 6.429385 ACCTGAATCAAGTTTCTCATCTGAAC 59.571 38.462 0.00 0.00 0.00 3.18
1446 2205 6.429078 CACCTGAATCAAGTTTCTCATCTGAA 59.571 38.462 0.00 0.00 0.00 3.02
1447 2206 5.936372 CACCTGAATCAAGTTTCTCATCTGA 59.064 40.000 0.00 0.00 0.00 3.27
1448 2207 5.936372 TCACCTGAATCAAGTTTCTCATCTG 59.064 40.000 0.00 0.00 0.00 2.90
1449 2208 6.119240 TCACCTGAATCAAGTTTCTCATCT 57.881 37.500 0.00 0.00 0.00 2.90
1450 2209 6.998968 ATCACCTGAATCAAGTTTCTCATC 57.001 37.500 0.00 0.00 0.00 2.92
1451 2210 7.052873 CCTATCACCTGAATCAAGTTTCTCAT 58.947 38.462 0.00 0.00 0.00 2.90
1452 2211 6.409704 CCTATCACCTGAATCAAGTTTCTCA 58.590 40.000 0.00 0.00 0.00 3.27
1453 2212 5.295540 GCCTATCACCTGAATCAAGTTTCTC 59.704 44.000 0.00 0.00 0.00 2.87
1454 2213 5.189180 GCCTATCACCTGAATCAAGTTTCT 58.811 41.667 0.00 0.00 0.00 2.52
1455 2214 4.034510 CGCCTATCACCTGAATCAAGTTTC 59.965 45.833 0.00 0.00 0.00 2.78
1456 2215 3.941483 CGCCTATCACCTGAATCAAGTTT 59.059 43.478 0.00 0.00 0.00 2.66
1457 2216 3.197766 TCGCCTATCACCTGAATCAAGTT 59.802 43.478 0.00 0.00 0.00 2.66
1458 2217 2.766263 TCGCCTATCACCTGAATCAAGT 59.234 45.455 0.00 0.00 0.00 3.16
1459 2218 3.459232 TCGCCTATCACCTGAATCAAG 57.541 47.619 0.00 0.00 0.00 3.02
1460 2219 3.904800 TTCGCCTATCACCTGAATCAA 57.095 42.857 0.00 0.00 0.00 2.57
1461 2220 3.904800 TTTCGCCTATCACCTGAATCA 57.095 42.857 0.00 0.00 0.00 2.57
1462 2221 5.296780 TCATTTTTCGCCTATCACCTGAATC 59.703 40.000 0.00 0.00 0.00 2.52
1463 2222 5.192927 TCATTTTTCGCCTATCACCTGAAT 58.807 37.500 0.00 0.00 0.00 2.57
1464 2223 4.584874 TCATTTTTCGCCTATCACCTGAA 58.415 39.130 0.00 0.00 0.00 3.02
1465 2224 4.214986 TCATTTTTCGCCTATCACCTGA 57.785 40.909 0.00 0.00 0.00 3.86
1466 2225 5.066375 TGAATCATTTTTCGCCTATCACCTG 59.934 40.000 0.00 0.00 0.00 4.00
1467 2226 5.192927 TGAATCATTTTTCGCCTATCACCT 58.807 37.500 0.00 0.00 0.00 4.00
1468 2227 5.499139 TGAATCATTTTTCGCCTATCACC 57.501 39.130 0.00 0.00 0.00 4.02
1469 2228 7.805071 CCTATTGAATCATTTTTCGCCTATCAC 59.195 37.037 0.00 0.00 0.00 3.06
1470 2229 7.719193 TCCTATTGAATCATTTTTCGCCTATCA 59.281 33.333 0.00 0.00 0.00 2.15
1471 2230 8.099364 TCCTATTGAATCATTTTTCGCCTATC 57.901 34.615 0.00 0.00 0.00 2.08
1492 2251 4.280677 CCTGCAAGTGAAAAACCAATCCTA 59.719 41.667 0.00 0.00 0.00 2.94
1493 2252 3.070015 CCTGCAAGTGAAAAACCAATCCT 59.930 43.478 0.00 0.00 0.00 3.24
1499 2309 2.307934 TTGCCTGCAAGTGAAAAACC 57.692 45.000 0.00 0.00 0.00 3.27
1512 2322 4.264253 TCACTAATCCACTTGATTGCCTG 58.736 43.478 0.00 0.00 43.57 4.85
1513 2323 4.574674 TCACTAATCCACTTGATTGCCT 57.425 40.909 0.00 0.00 43.57 4.75
1538 2348 3.286353 TCTGCACATGACAAAAAGTGGA 58.714 40.909 0.00 0.00 32.80 4.02
1542 2352 4.556942 TCACTCTGCACATGACAAAAAG 57.443 40.909 0.00 0.00 0.00 2.27
1549 2359 6.225981 ACATACTAATCACTCTGCACATGA 57.774 37.500 0.00 0.00 0.00 3.07
1555 2365 7.708322 TCAAGATGAACATACTAATCACTCTGC 59.292 37.037 0.00 0.00 0.00 4.26
1586 2408 5.739161 GTGTTTCAGTGTGATCAAAGTTGAC 59.261 40.000 0.00 0.00 40.49 3.18
1607 2429 0.469917 CCAACTGGGAGAGTGTGTGT 59.530 55.000 0.00 0.00 40.01 3.72
1619 2441 4.625607 AGGAAGAAAGTACTCCAACTGG 57.374 45.455 0.00 0.00 0.00 4.00
1620 2442 5.368989 ACAAGGAAGAAAGTACTCCAACTG 58.631 41.667 0.00 0.00 0.00 3.16
1622 2449 5.612351 AGACAAGGAAGAAAGTACTCCAAC 58.388 41.667 0.00 0.00 0.00 3.77
1626 2453 8.113173 TCTTAGAGACAAGGAAGAAAGTACTC 57.887 38.462 0.00 0.00 0.00 2.59
1627 2454 8.480133 TTCTTAGAGACAAGGAAGAAAGTACT 57.520 34.615 0.00 0.00 35.53 2.73
1654 2481 2.250924 CCAACCCAAGGAAGCATTTCT 58.749 47.619 0.00 0.00 33.68 2.52
1691 2542 7.011382 AGAGTAACCGTATATTCCTTCCATCT 58.989 38.462 0.00 0.00 0.00 2.90
1701 2552 8.289939 TGAAGACTGAAGAGTAACCGTATATT 57.710 34.615 0.00 0.00 30.16 1.28
1703 2554 7.692460 TTGAAGACTGAAGAGTAACCGTATA 57.308 36.000 0.00 0.00 30.16 1.47
1707 2558 5.119279 CACATTGAAGACTGAAGAGTAACCG 59.881 44.000 0.00 0.00 30.16 4.44
1708 2559 5.409826 CCACATTGAAGACTGAAGAGTAACC 59.590 44.000 0.00 0.00 30.16 2.85
1709 2560 5.992217 ACCACATTGAAGACTGAAGAGTAAC 59.008 40.000 0.00 0.00 30.16 2.50
1723 2574 3.138304 GCAGTCAGTACACCACATTGAA 58.862 45.455 0.00 0.00 0.00 2.69
1726 2577 2.368548 TCAGCAGTCAGTACACCACATT 59.631 45.455 0.00 0.00 0.00 2.71
1732 2583 2.376808 ATGCTCAGCAGTCAGTACAC 57.623 50.000 5.13 0.00 43.65 2.90
1758 2609 0.181350 ATCAGATGGGACGCCCTTTC 59.819 55.000 14.76 11.54 45.70 2.62
1796 2647 8.942338 TGTAGAAAATTACGAGAATGTATGCT 57.058 30.769 0.00 0.00 0.00 3.79
1802 2653 8.129211 GGGGAAATGTAGAAAATTACGAGAATG 58.871 37.037 0.00 0.00 0.00 2.67
1827 2678 1.142748 CGTCCTGGAGCTAAGCAGG 59.857 63.158 0.00 0.00 36.22 4.85
1836 2687 4.087892 CAGGCCACCGTCCTGGAG 62.088 72.222 5.01 0.00 45.62 3.86
1901 2756 8.634335 TTTTTAGGGCGTTTAAGTAATAAGGT 57.366 30.769 0.00 0.00 0.00 3.50
1906 2761 8.113173 TCACATTTTTAGGGCGTTTAAGTAAT 57.887 30.769 0.00 0.00 0.00 1.89
1914 2769 4.321675 GGACATTCACATTTTTAGGGCGTT 60.322 41.667 0.00 0.00 0.00 4.84
1916 2771 3.443681 AGGACATTCACATTTTTAGGGCG 59.556 43.478 0.00 0.00 0.00 6.13
1963 2819 4.199310 GCCTACAAGCCTACAATTCATCA 58.801 43.478 0.00 0.00 0.00 3.07
1990 2846 0.250467 CAGGTTGCCAGCACTGTACT 60.250 55.000 0.00 0.00 0.00 2.73
2006 2862 3.620374 CAGAACATGTACTAGCTTGCAGG 59.380 47.826 0.00 0.00 0.00 4.85
2029 2885 2.034066 TCAGCGAAAGGCCAAGGG 59.966 61.111 5.01 0.00 45.17 3.95
2030 2886 0.036388 TACTCAGCGAAAGGCCAAGG 60.036 55.000 5.01 0.00 45.17 3.61
2031 2887 1.338200 ACTACTCAGCGAAAGGCCAAG 60.338 52.381 5.01 0.00 45.17 3.61
2032 2888 0.685097 ACTACTCAGCGAAAGGCCAA 59.315 50.000 5.01 0.00 45.17 4.52
2033 2889 1.552578 TACTACTCAGCGAAAGGCCA 58.447 50.000 5.01 0.00 45.17 5.36
2034 2890 2.159085 ACATACTACTCAGCGAAAGGCC 60.159 50.000 0.00 0.00 45.17 5.19
2035 2891 2.860735 CACATACTACTCAGCGAAAGGC 59.139 50.000 0.00 0.00 44.05 4.35
2036 2892 3.859961 CACACATACTACTCAGCGAAAGG 59.140 47.826 0.00 0.00 0.00 3.11
2037 2893 3.304559 GCACACATACTACTCAGCGAAAG 59.695 47.826 0.00 0.00 0.00 2.62
2038 2894 3.250744 GCACACATACTACTCAGCGAAA 58.749 45.455 0.00 0.00 0.00 3.46
2039 2895 2.731027 CGCACACATACTACTCAGCGAA 60.731 50.000 0.00 0.00 46.01 4.70
2040 2896 1.202143 CGCACACATACTACTCAGCGA 60.202 52.381 0.00 0.00 46.01 4.93
2041 2897 1.191944 CGCACACATACTACTCAGCG 58.808 55.000 0.00 0.00 37.91 5.18
2042 2898 2.186076 GTCGCACACATACTACTCAGC 58.814 52.381 0.00 0.00 0.00 4.26
2043 2899 3.487563 TGTCGCACACATACTACTCAG 57.512 47.619 0.00 0.00 0.00 3.35
2044 2900 3.254903 ACTTGTCGCACACATACTACTCA 59.745 43.478 0.00 0.00 33.90 3.41
2045 2901 3.834610 ACTTGTCGCACACATACTACTC 58.165 45.455 0.00 0.00 33.90 2.59
2046 2902 3.254903 TGACTTGTCGCACACATACTACT 59.745 43.478 0.00 0.00 33.90 2.57
2047 2903 3.364023 GTGACTTGTCGCACACATACTAC 59.636 47.826 9.16 0.00 33.90 2.73
2048 2904 3.004944 TGTGACTTGTCGCACACATACTA 59.995 43.478 12.29 0.00 39.86 1.82
2049 2905 2.223947 TGTGACTTGTCGCACACATACT 60.224 45.455 12.29 0.00 39.86 2.12
2050 2906 2.131972 TGTGACTTGTCGCACACATAC 58.868 47.619 12.29 0.00 39.86 2.39
2051 2907 2.223947 ACTGTGACTTGTCGCACACATA 60.224 45.455 12.29 0.00 41.32 2.29
2052 2908 1.220529 CTGTGACTTGTCGCACACAT 58.779 50.000 12.29 0.00 41.32 3.21
2053 2909 0.108377 ACTGTGACTTGTCGCACACA 60.108 50.000 12.29 0.00 39.86 3.72
2054 2910 1.521423 GTACTGTGACTTGTCGCACAC 59.479 52.381 12.29 9.75 39.86 3.82
2055 2911 1.135333 TGTACTGTGACTTGTCGCACA 59.865 47.619 12.29 7.30 42.25 4.57
2056 2912 1.521423 GTGTACTGTGACTTGTCGCAC 59.479 52.381 12.29 5.03 35.63 5.34
2057 2913 1.135333 TGTGTACTGTGACTTGTCGCA 59.865 47.619 14.99 14.99 0.00 5.10
2058 2914 1.787155 CTGTGTACTGTGACTTGTCGC 59.213 52.381 7.31 7.31 0.00 5.19
2059 2915 3.079960 ACTGTGTACTGTGACTTGTCG 57.920 47.619 0.00 0.00 0.00 4.35
2060 2916 5.008811 AGAGTACTGTGTACTGTGACTTGTC 59.991 44.000 14.14 0.00 0.00 3.18
2061 2917 4.888239 AGAGTACTGTGTACTGTGACTTGT 59.112 41.667 14.14 0.00 0.00 3.16
2062 2918 5.239744 AGAGAGTACTGTGTACTGTGACTTG 59.760 44.000 14.14 0.00 0.00 3.16
2063 2919 5.378332 AGAGAGTACTGTGTACTGTGACTT 58.622 41.667 14.14 0.00 0.00 3.01
2064 2920 4.975631 AGAGAGTACTGTGTACTGTGACT 58.024 43.478 14.14 5.96 0.00 3.41
2065 2921 6.128227 CCTTAGAGAGTACTGTGTACTGTGAC 60.128 46.154 14.14 1.63 0.00 3.67
2066 2922 5.938710 CCTTAGAGAGTACTGTGTACTGTGA 59.061 44.000 14.14 0.04 0.00 3.58
2067 2923 5.706369 ACCTTAGAGAGTACTGTGTACTGTG 59.294 44.000 14.14 2.49 0.00 3.66
2068 2924 5.878627 ACCTTAGAGAGTACTGTGTACTGT 58.121 41.667 14.14 10.61 0.00 3.55
2069 2925 6.655848 AGAACCTTAGAGAGTACTGTGTACTG 59.344 42.308 14.14 0.00 0.00 2.74
2070 2926 6.781943 AGAACCTTAGAGAGTACTGTGTACT 58.218 40.000 0.00 9.77 0.00 2.73
2071 2927 8.040132 TCTAGAACCTTAGAGAGTACTGTGTAC 58.960 40.741 0.00 0.05 0.00 2.90
2072 2928 8.143673 TCTAGAACCTTAGAGAGTACTGTGTA 57.856 38.462 0.00 0.00 0.00 2.90
2073 2929 7.018487 TCTAGAACCTTAGAGAGTACTGTGT 57.982 40.000 0.00 0.00 0.00 3.72
2074 2930 7.925043 TTCTAGAACCTTAGAGAGTACTGTG 57.075 40.000 0.00 0.00 31.68 3.66
2096 2952 5.858581 GGTCACTTGCATGTCAAACTATTTC 59.141 40.000 1.56 0.00 33.65 2.17
2591 3447 1.009829 GCAACAATCCCGCTCACTAG 58.990 55.000 0.00 0.00 0.00 2.57
2592 3448 0.613260 AGCAACAATCCCGCTCACTA 59.387 50.000 0.00 0.00 0.00 2.74
2593 3449 0.957395 CAGCAACAATCCCGCTCACT 60.957 55.000 0.00 0.00 32.48 3.41
2594 3450 1.503542 CAGCAACAATCCCGCTCAC 59.496 57.895 0.00 0.00 32.48 3.51
2595 3451 1.675310 CCAGCAACAATCCCGCTCA 60.675 57.895 0.00 0.00 32.48 4.26
2596 3452 1.244019 AACCAGCAACAATCCCGCTC 61.244 55.000 0.00 0.00 32.48 5.03
2597 3453 0.037590 TAACCAGCAACAATCCCGCT 59.962 50.000 0.00 0.00 36.10 5.52
2598 3454 1.102978 ATAACCAGCAACAATCCCGC 58.897 50.000 0.00 0.00 0.00 6.13
2599 3455 3.866883 AAATAACCAGCAACAATCCCG 57.133 42.857 0.00 0.00 0.00 5.14
2600 3456 3.684305 GCAAAATAACCAGCAACAATCCC 59.316 43.478 0.00 0.00 0.00 3.85
2610 3466 9.353999 GGAACTAGTTTTATGCAAAATAACCAG 57.646 33.333 10.02 0.00 36.10 4.00
2626 3482 9.125026 CAATTATAATGAGCCTGGAACTAGTTT 57.875 33.333 10.02 0.00 0.00 2.66
2633 3489 8.439971 ACATAGTCAATTATAATGAGCCTGGAA 58.560 33.333 0.00 0.00 0.00 3.53
2664 3522 2.489329 CGAGGTGCACTTCCAATGAAAT 59.511 45.455 21.86 0.00 0.00 2.17
2680 3538 1.321474 TACAAACACTCCGTCGAGGT 58.679 50.000 4.18 0.00 40.77 3.85
2688 3546 8.718734 CAGAGGTATAAAAGTTACAAACACTCC 58.281 37.037 0.00 0.00 0.00 3.85
2742 3600 7.976734 TGTTGGACATTTAACAGTGTAAAAAGG 59.023 33.333 11.83 11.83 33.29 3.11
2743 3601 8.918961 TGTTGGACATTTAACAGTGTAAAAAG 57.081 30.769 0.00 0.00 33.29 2.27
2841 3700 1.188863 GGAAAATGAGCCCAGCACAT 58.811 50.000 0.00 0.00 41.19 3.21
3015 3882 1.961277 GTTCCGGTGGACAGTGCAG 60.961 63.158 0.00 0.00 0.00 4.41
3456 4334 7.786178 TGAATAAAAGGAACATCCAGATACG 57.214 36.000 0.00 0.00 39.61 3.06
3734 4613 4.095410 ACAAAATACATGACATGCCGTG 57.905 40.909 15.49 9.00 0.00 4.94
3755 4634 4.273480 GCTTCAGAGTTAGCAGTGACAAAA 59.727 41.667 0.00 0.00 37.35 2.44
3834 4713 1.216427 AGGCCTTTGGATGGGATTCTC 59.784 52.381 0.00 0.00 0.00 2.87
3859 4738 0.797542 ACGACGATAGAGATAGCGCC 59.202 55.000 2.29 0.00 41.38 6.53
3981 4860 8.512138 CCGAATGACCAAAACTTAGTTATTTCT 58.488 33.333 0.00 0.00 0.00 2.52
3982 4861 8.294577 ACCGAATGACCAAAACTTAGTTATTTC 58.705 33.333 0.00 0.00 0.00 2.17
3999 4878 1.398390 GCCTGTCATCAACCGAATGAC 59.602 52.381 8.86 8.86 43.50 3.06
4006 4885 2.048603 GCCCAGCCTGTCATCAACC 61.049 63.158 0.00 0.00 0.00 3.77
4058 4937 7.210174 TGGTATACAATGTCAGTAGCTTGATC 58.790 38.462 5.01 0.00 0.00 2.92
4098 4977 2.106511 ACTGACCAGCTTCCTTTAGCAA 59.893 45.455 0.00 0.00 43.68 3.91
4142 5021 6.313905 AGCAGTTTCGGTTCTCATAATACAAG 59.686 38.462 0.00 0.00 0.00 3.16
4143 5022 6.170506 AGCAGTTTCGGTTCTCATAATACAA 58.829 36.000 0.00 0.00 0.00 2.41
4200 5116 2.352127 GCCCTTCTGATCAAACTTGTGC 60.352 50.000 0.00 0.00 0.00 4.57
4239 5155 3.451178 ACATAAGCCAGGAGTCGTACATT 59.549 43.478 0.00 0.00 0.00 2.71
4246 5162 4.156739 CCAGAAAAACATAAGCCAGGAGTC 59.843 45.833 0.00 0.00 0.00 3.36
4248 5164 4.082125 ACCAGAAAAACATAAGCCAGGAG 58.918 43.478 0.00 0.00 0.00 3.69
4260 5176 3.386402 TGGACCCAATCAACCAGAAAAAC 59.614 43.478 0.00 0.00 0.00 2.43
4343 5261 3.190744 TGCGTTGGTACTGTGTTCAAAAA 59.809 39.130 0.00 0.00 0.00 1.94
4344 5262 2.747989 TGCGTTGGTACTGTGTTCAAAA 59.252 40.909 0.00 0.00 0.00 2.44
4345 5263 2.357075 TGCGTTGGTACTGTGTTCAAA 58.643 42.857 0.00 0.00 0.00 2.69
4346 5264 2.025589 TGCGTTGGTACTGTGTTCAA 57.974 45.000 0.00 0.00 0.00 2.69
4347 5265 2.025589 TTGCGTTGGTACTGTGTTCA 57.974 45.000 0.00 0.00 0.00 3.18
4348 5266 2.711885 GTTTGCGTTGGTACTGTGTTC 58.288 47.619 0.00 0.00 0.00 3.18
4349 5267 1.062880 CGTTTGCGTTGGTACTGTGTT 59.937 47.619 0.00 0.00 0.00 3.32
4350 5268 0.653636 CGTTTGCGTTGGTACTGTGT 59.346 50.000 0.00 0.00 0.00 3.72
4351 5269 3.431068 CGTTTGCGTTGGTACTGTG 57.569 52.632 0.00 0.00 0.00 3.66
4362 5280 2.350616 GCGTACATATGAACGTTTGCG 58.649 47.619 10.38 1.53 41.10 4.85
4363 5281 2.350616 CGCGTACATATGAACGTTTGC 58.649 47.619 10.38 2.68 41.10 3.68
4364 5282 2.222618 TGCGCGTACATATGAACGTTTG 60.223 45.455 10.38 0.00 41.10 2.93
4365 5283 1.994074 TGCGCGTACATATGAACGTTT 59.006 42.857 10.38 0.00 41.10 3.60
4366 5284 1.631284 TGCGCGTACATATGAACGTT 58.369 45.000 10.38 0.00 41.10 3.99
4367 5285 1.847818 ATGCGCGTACATATGAACGT 58.152 45.000 10.38 0.00 41.10 3.99
4368 5286 2.722116 TGTATGCGCGTACATATGAACG 59.278 45.455 32.99 8.22 41.92 3.95
4369 5287 3.734231 AGTGTATGCGCGTACATATGAAC 59.266 43.478 37.10 25.40 36.98 3.18
4370 5288 3.972403 AGTGTATGCGCGTACATATGAA 58.028 40.909 37.10 16.75 36.98 2.57
4371 5289 3.003897 TGAGTGTATGCGCGTACATATGA 59.996 43.478 37.10 23.71 36.98 2.15
4372 5290 3.119628 GTGAGTGTATGCGCGTACATATG 59.880 47.826 37.10 0.00 36.98 1.78
4373 5291 3.305964 GTGAGTGTATGCGCGTACATAT 58.694 45.455 37.10 29.55 36.98 1.78
4374 5292 2.542205 GGTGAGTGTATGCGCGTACATA 60.542 50.000 37.10 25.61 36.98 2.29
4375 5293 1.556564 GTGAGTGTATGCGCGTACAT 58.443 50.000 37.10 27.03 36.98 2.29
4376 5294 0.457166 GGTGAGTGTATGCGCGTACA 60.457 55.000 32.99 32.99 32.43 2.90
4377 5295 1.143969 GGGTGAGTGTATGCGCGTAC 61.144 60.000 28.80 28.80 0.00 3.67
4378 5296 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
4379 5297 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
4380 5298 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
4381 5299 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
4382 5300 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
4383 5301 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
4384 5302 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
4385 5303 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
4386 5304 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
4387 5305 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
4388 5306 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
4389 5307 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
4390 5308 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
4391 5309 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
4392 5310 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
4393 5311 0.398696 TTGTGTGCGTTCATAGGGGT 59.601 50.000 0.00 0.00 0.00 4.95
4394 5312 1.199097 GTTTGTGTGCGTTCATAGGGG 59.801 52.381 0.00 0.00 0.00 4.79
4395 5313 1.199097 GGTTTGTGTGCGTTCATAGGG 59.801 52.381 0.00 0.00 0.00 3.53
4396 5314 1.199097 GGGTTTGTGTGCGTTCATAGG 59.801 52.381 0.00 0.00 0.00 2.57
4397 5315 1.876799 TGGGTTTGTGTGCGTTCATAG 59.123 47.619 0.00 0.00 0.00 2.23
4398 5316 1.968704 TGGGTTTGTGTGCGTTCATA 58.031 45.000 0.00 0.00 0.00 2.15
4399 5317 1.107114 TTGGGTTTGTGTGCGTTCAT 58.893 45.000 0.00 0.00 0.00 2.57
4400 5318 1.107114 ATTGGGTTTGTGTGCGTTCA 58.893 45.000 0.00 0.00 0.00 3.18
4401 5319 3.241701 CATATTGGGTTTGTGTGCGTTC 58.758 45.455 0.00 0.00 0.00 3.95
4402 5320 2.625790 ACATATTGGGTTTGTGTGCGTT 59.374 40.909 0.00 0.00 0.00 4.84
4403 5321 2.227865 GACATATTGGGTTTGTGTGCGT 59.772 45.455 0.00 0.00 0.00 5.24
4404 5322 2.227626 TGACATATTGGGTTTGTGTGCG 59.772 45.455 0.00 0.00 0.00 5.34
4405 5323 3.932545 TGACATATTGGGTTTGTGTGC 57.067 42.857 0.00 0.00 0.00 4.57
4406 5324 6.507958 TGTATGACATATTGGGTTTGTGTG 57.492 37.500 0.00 0.00 0.00 3.82
4407 5325 7.395772 TCATTGTATGACATATTGGGTTTGTGT 59.604 33.333 0.00 0.00 33.59 3.72
4408 5326 7.770201 TCATTGTATGACATATTGGGTTTGTG 58.230 34.615 0.00 0.00 33.59 3.33
4409 5327 7.833682 TCTCATTGTATGACATATTGGGTTTGT 59.166 33.333 0.00 0.00 35.06 2.83
4410 5328 8.224389 TCTCATTGTATGACATATTGGGTTTG 57.776 34.615 0.00 0.00 35.06 2.93
4411 5329 8.274322 TCTCTCATTGTATGACATATTGGGTTT 58.726 33.333 0.00 0.00 35.06 3.27
4412 5330 7.805163 TCTCTCATTGTATGACATATTGGGTT 58.195 34.615 0.00 0.00 35.06 4.11
4421 5339 4.801330 ACGGTTCTCTCATTGTATGACA 57.199 40.909 0.00 0.00 35.06 3.58
4422 5340 5.625721 CGATACGGTTCTCTCATTGTATGAC 59.374 44.000 0.00 0.00 35.06 3.06
4439 5357 6.294010 CATATCAGGTATGGTATCCGATACGG 60.294 46.154 11.58 3.66 41.27 4.02
4446 5365 7.124573 TGCATACATATCAGGTATGGTATCC 57.875 40.000 11.58 0.00 45.17 2.59
4452 5371 6.567959 ACTCGATGCATACATATCAGGTATG 58.432 40.000 0.00 6.61 46.85 2.39
4453 5372 6.782082 ACTCGATGCATACATATCAGGTAT 57.218 37.500 0.00 0.00 36.35 2.73
4462 5381 9.719355 TTATTTACCAATACTCGATGCATACAT 57.281 29.630 0.00 0.00 39.98 2.29
4464 5383 9.807386 GTTTATTTACCAATACTCGATGCATAC 57.193 33.333 0.00 0.00 0.00 2.39
4466 5385 8.445275 TGTTTATTTACCAATACTCGATGCAT 57.555 30.769 0.00 0.00 0.00 3.96
4467 5386 7.851387 TGTTTATTTACCAATACTCGATGCA 57.149 32.000 0.00 0.00 0.00 3.96
4468 5387 9.730420 ATTTGTTTATTTACCAATACTCGATGC 57.270 29.630 0.00 0.00 0.00 3.91
4488 5407 9.719355 GGTGGGAAAGAATTATGTTTATTTGTT 57.281 29.630 0.00 0.00 0.00 2.83
4489 5408 9.100197 AGGTGGGAAAGAATTATGTTTATTTGT 57.900 29.630 0.00 0.00 0.00 2.83
4490 5409 9.942850 AAGGTGGGAAAGAATTATGTTTATTTG 57.057 29.630 0.00 0.00 0.00 2.32
4491 5410 9.942850 CAAGGTGGGAAAGAATTATGTTTATTT 57.057 29.630 0.00 0.00 0.00 1.40
4492 5411 9.320295 TCAAGGTGGGAAAGAATTATGTTTATT 57.680 29.630 0.00 0.00 0.00 1.40
4493 5412 8.893563 TCAAGGTGGGAAAGAATTATGTTTAT 57.106 30.769 0.00 0.00 0.00 1.40
4494 5413 8.893563 ATCAAGGTGGGAAAGAATTATGTTTA 57.106 30.769 0.00 0.00 0.00 2.01
4495 5414 7.797121 ATCAAGGTGGGAAAGAATTATGTTT 57.203 32.000 0.00 0.00 0.00 2.83
4496 5415 8.116026 AGTATCAAGGTGGGAAAGAATTATGTT 58.884 33.333 0.00 0.00 0.00 2.71
4497 5416 7.643123 AGTATCAAGGTGGGAAAGAATTATGT 58.357 34.615 0.00 0.00 0.00 2.29
4498 5417 8.408601 CAAGTATCAAGGTGGGAAAGAATTATG 58.591 37.037 0.00 0.00 0.00 1.90
4499 5418 7.068716 GCAAGTATCAAGGTGGGAAAGAATTAT 59.931 37.037 0.00 0.00 0.00 1.28
4500 5419 6.377146 GCAAGTATCAAGGTGGGAAAGAATTA 59.623 38.462 0.00 0.00 0.00 1.40
4501 5420 5.185828 GCAAGTATCAAGGTGGGAAAGAATT 59.814 40.000 0.00 0.00 0.00 2.17
4502 5421 4.706962 GCAAGTATCAAGGTGGGAAAGAAT 59.293 41.667 0.00 0.00 0.00 2.40
4503 5422 4.079253 GCAAGTATCAAGGTGGGAAAGAA 58.921 43.478 0.00 0.00 0.00 2.52
4504 5423 3.561313 GGCAAGTATCAAGGTGGGAAAGA 60.561 47.826 0.00 0.00 0.00 2.52
4505 5424 2.755103 GGCAAGTATCAAGGTGGGAAAG 59.245 50.000 0.00 0.00 0.00 2.62
4506 5425 2.378547 AGGCAAGTATCAAGGTGGGAAA 59.621 45.455 0.00 0.00 0.00 3.13
4507 5426 1.992557 AGGCAAGTATCAAGGTGGGAA 59.007 47.619 0.00 0.00 0.00 3.97
4508 5427 1.668826 AGGCAAGTATCAAGGTGGGA 58.331 50.000 0.00 0.00 0.00 4.37
4509 5428 3.644966 TTAGGCAAGTATCAAGGTGGG 57.355 47.619 0.00 0.00 0.00 4.61
4510 5429 5.063880 GGTATTAGGCAAGTATCAAGGTGG 58.936 45.833 0.00 0.00 0.00 4.61
4511 5430 5.760253 CAGGTATTAGGCAAGTATCAAGGTG 59.240 44.000 0.00 0.00 0.00 4.00
4512 5431 5.428783 ACAGGTATTAGGCAAGTATCAAGGT 59.571 40.000 0.00 0.00 0.00 3.50
4513 5432 5.930135 ACAGGTATTAGGCAAGTATCAAGG 58.070 41.667 0.00 0.00 0.00 3.61
4514 5433 7.155328 CCTACAGGTATTAGGCAAGTATCAAG 58.845 42.308 0.00 0.00 29.85 3.02
4515 5434 7.062749 CCTACAGGTATTAGGCAAGTATCAA 57.937 40.000 0.00 0.00 29.85 2.57
4516 5435 6.665992 CCTACAGGTATTAGGCAAGTATCA 57.334 41.667 0.00 0.00 29.85 2.15
4532 5451 5.776173 AGAGATCGAAACATACCTACAGG 57.224 43.478 0.00 0.00 42.17 4.00
4533 5452 7.364200 CCTAAGAGATCGAAACATACCTACAG 58.636 42.308 0.00 0.00 0.00 2.74
4534 5453 6.264744 CCCTAAGAGATCGAAACATACCTACA 59.735 42.308 0.00 0.00 0.00 2.74
4535 5454 6.679843 CCCTAAGAGATCGAAACATACCTAC 58.320 44.000 0.00 0.00 0.00 3.18
4536 5455 5.243283 GCCCTAAGAGATCGAAACATACCTA 59.757 44.000 0.00 0.00 0.00 3.08
4537 5456 4.039366 GCCCTAAGAGATCGAAACATACCT 59.961 45.833 0.00 0.00 0.00 3.08
4538 5457 4.202223 TGCCCTAAGAGATCGAAACATACC 60.202 45.833 0.00 0.00 0.00 2.73
4539 5458 4.945246 TGCCCTAAGAGATCGAAACATAC 58.055 43.478 0.00 0.00 0.00 2.39
4540 5459 5.540337 AGATGCCCTAAGAGATCGAAACATA 59.460 40.000 0.00 0.00 0.00 2.29
4541 5460 4.346418 AGATGCCCTAAGAGATCGAAACAT 59.654 41.667 0.00 0.00 0.00 2.71
4542 5461 3.706594 AGATGCCCTAAGAGATCGAAACA 59.293 43.478 0.00 0.00 0.00 2.83
4543 5462 4.038642 AGAGATGCCCTAAGAGATCGAAAC 59.961 45.833 0.00 0.00 0.00 2.78
4544 5463 4.219115 AGAGATGCCCTAAGAGATCGAAA 58.781 43.478 0.00 0.00 0.00 3.46
4545 5464 3.838565 AGAGATGCCCTAAGAGATCGAA 58.161 45.455 0.00 0.00 0.00 3.71
4546 5465 3.517296 AGAGATGCCCTAAGAGATCGA 57.483 47.619 0.00 0.00 0.00 3.59
4547 5466 3.128589 GCTAGAGATGCCCTAAGAGATCG 59.871 52.174 0.00 0.00 0.00 3.69
4548 5467 3.128589 CGCTAGAGATGCCCTAAGAGATC 59.871 52.174 0.00 0.00 0.00 2.75
4549 5468 3.088532 CGCTAGAGATGCCCTAAGAGAT 58.911 50.000 0.00 0.00 0.00 2.75
4550 5469 2.509569 CGCTAGAGATGCCCTAAGAGA 58.490 52.381 0.00 0.00 0.00 3.10
4551 5470 1.543802 CCGCTAGAGATGCCCTAAGAG 59.456 57.143 0.00 0.00 0.00 2.85
4552 5471 1.145119 TCCGCTAGAGATGCCCTAAGA 59.855 52.381 0.00 0.00 0.00 2.10
4553 5472 1.621992 TCCGCTAGAGATGCCCTAAG 58.378 55.000 0.00 0.00 0.00 2.18
4554 5473 1.687123 GTTCCGCTAGAGATGCCCTAA 59.313 52.381 0.00 0.00 0.00 2.69
4555 5474 1.133450 AGTTCCGCTAGAGATGCCCTA 60.133 52.381 0.00 0.00 0.00 3.53
4556 5475 0.397816 AGTTCCGCTAGAGATGCCCT 60.398 55.000 0.00 0.00 0.00 5.19
4557 5476 0.466124 AAGTTCCGCTAGAGATGCCC 59.534 55.000 0.00 0.00 0.00 5.36
4558 5477 1.410882 AGAAGTTCCGCTAGAGATGCC 59.589 52.381 0.00 0.00 0.00 4.40
4559 5478 2.880963 AGAAGTTCCGCTAGAGATGC 57.119 50.000 0.00 0.00 0.00 3.91
4560 5479 5.230306 CGTTTTAGAAGTTCCGCTAGAGATG 59.770 44.000 0.00 0.00 0.00 2.90
4561 5480 5.341617 CGTTTTAGAAGTTCCGCTAGAGAT 58.658 41.667 0.00 0.00 0.00 2.75
4562 5481 4.380233 CCGTTTTAGAAGTTCCGCTAGAGA 60.380 45.833 0.00 0.00 0.00 3.10
4563 5482 3.858238 CCGTTTTAGAAGTTCCGCTAGAG 59.142 47.826 0.00 0.00 0.00 2.43
4564 5483 3.367703 CCCGTTTTAGAAGTTCCGCTAGA 60.368 47.826 0.00 0.00 0.00 2.43
4565 5484 2.928116 CCCGTTTTAGAAGTTCCGCTAG 59.072 50.000 0.00 0.00 0.00 3.42
4566 5485 2.299867 ACCCGTTTTAGAAGTTCCGCTA 59.700 45.455 0.00 0.00 0.00 4.26
4567 5486 1.071228 ACCCGTTTTAGAAGTTCCGCT 59.929 47.619 0.00 0.00 0.00 5.52
4568 5487 1.516161 ACCCGTTTTAGAAGTTCCGC 58.484 50.000 0.00 0.00 0.00 5.54
4569 5488 3.059393 GTCAACCCGTTTTAGAAGTTCCG 60.059 47.826 0.00 0.00 0.00 4.30
4570 5489 4.132336 AGTCAACCCGTTTTAGAAGTTCC 58.868 43.478 0.00 0.00 0.00 3.62
4571 5490 4.212847 GGAGTCAACCCGTTTTAGAAGTTC 59.787 45.833 0.00 0.00 0.00 3.01
4572 5491 4.132336 GGAGTCAACCCGTTTTAGAAGTT 58.868 43.478 0.00 0.00 0.00 2.66
4573 5492 3.390311 AGGAGTCAACCCGTTTTAGAAGT 59.610 43.478 0.00 0.00 0.00 3.01
4574 5493 3.995048 GAGGAGTCAACCCGTTTTAGAAG 59.005 47.826 0.00 0.00 0.00 2.85
4612 5531 1.368374 AGGTGCAGCTTAACCCCTAA 58.632 50.000 13.85 0.00 37.13 2.69
4613 5532 1.835531 GTAGGTGCAGCTTAACCCCTA 59.164 52.381 25.47 7.58 37.13 3.53
4661 5583 3.430790 CGGCTGACACATCTCCTCAAATA 60.431 47.826 0.00 0.00 0.00 1.40
4669 5591 1.520342 GAGGCGGCTGACACATCTC 60.520 63.158 19.63 0.00 0.00 2.75
4670 5592 1.954362 GAGAGGCGGCTGACACATCT 61.954 60.000 19.63 5.04 0.00 2.90
4671 5593 1.520342 GAGAGGCGGCTGACACATC 60.520 63.158 19.63 0.00 0.00 3.06
4672 5594 1.830587 TTGAGAGGCGGCTGACACAT 61.831 55.000 19.63 0.00 0.00 3.21
4673 5595 2.038814 TTTGAGAGGCGGCTGACACA 62.039 55.000 19.63 4.76 0.00 3.72
4689 5611 1.720852 CTTTTCGGCCGCTCAAATTTG 59.279 47.619 23.51 12.15 0.00 2.32
4700 5622 0.179153 GCTGAGATTGCTTTTCGGCC 60.179 55.000 0.00 0.00 37.27 6.13
4703 5625 4.539870 TCTTTTGCTGAGATTGCTTTTCG 58.460 39.130 0.00 0.00 0.00 3.46
4725 5647 3.470888 CGCACGAGGGGAGGGAAT 61.471 66.667 0.00 0.00 0.00 3.01
4728 5650 3.917760 GATCGCACGAGGGGAGGG 61.918 72.222 0.00 0.00 42.26 4.30
4753 5675 1.250840 GGAAAGTGTGGGTGGCCATC 61.251 60.000 9.72 8.70 0.00 3.51
4754 5676 1.228862 GGAAAGTGTGGGTGGCCAT 60.229 57.895 9.72 0.00 0.00 4.40
4755 5677 2.197324 GGAAAGTGTGGGTGGCCA 59.803 61.111 0.00 0.00 0.00 5.36
4756 5678 2.600470 GGGAAAGTGTGGGTGGCC 60.600 66.667 0.00 0.00 0.00 5.36
4757 5679 2.197324 TGGGAAAGTGTGGGTGGC 59.803 61.111 0.00 0.00 0.00 5.01
4760 5682 1.143073 GAAGAGTGGGAAAGTGTGGGT 59.857 52.381 0.00 0.00 0.00 4.51
4761 5683 1.421646 AGAAGAGTGGGAAAGTGTGGG 59.578 52.381 0.00 0.00 0.00 4.61
4766 5688 0.321996 GCCGAGAAGAGTGGGAAAGT 59.678 55.000 0.00 0.00 0.00 2.66
4768 5690 0.034896 GTGCCGAGAAGAGTGGGAAA 59.965 55.000 0.00 0.00 0.00 3.13
4769 5691 1.671742 GTGCCGAGAAGAGTGGGAA 59.328 57.895 0.00 0.00 0.00 3.97
4770 5692 2.283529 GGTGCCGAGAAGAGTGGGA 61.284 63.158 0.00 0.00 0.00 4.37
4772 5694 0.970937 TAGGGTGCCGAGAAGAGTGG 60.971 60.000 0.00 0.00 0.00 4.00
4773 5695 0.173708 GTAGGGTGCCGAGAAGAGTG 59.826 60.000 0.00 0.00 0.00 3.51
4774 5696 0.971447 GGTAGGGTGCCGAGAAGAGT 60.971 60.000 0.00 0.00 0.00 3.24
4775 5697 1.817209 GGTAGGGTGCCGAGAAGAG 59.183 63.158 0.00 0.00 0.00 2.85
4776 5698 4.029472 GGTAGGGTGCCGAGAAGA 57.971 61.111 0.00 0.00 0.00 2.87
4790 5742 3.603080 TGGGGTGGGAGGTCGGTA 61.603 66.667 0.00 0.00 0.00 4.02
4861 5813 2.540361 GCATCTATTTCAACGGCTGCAG 60.540 50.000 10.11 10.11 0.00 4.41
4868 5820 5.228635 GCAACTTGATGCATCTATTTCAACG 59.771 40.000 26.32 8.69 45.70 4.10
4869 5821 5.228635 CGCAACTTGATGCATCTATTTCAAC 59.771 40.000 26.32 10.53 46.76 3.18
4870 5822 5.334319 CGCAACTTGATGCATCTATTTCAA 58.666 37.500 26.32 12.53 46.76 2.69
4871 5823 4.201940 CCGCAACTTGATGCATCTATTTCA 60.202 41.667 26.32 4.69 46.76 2.69
4872 5824 4.285292 CCGCAACTTGATGCATCTATTTC 58.715 43.478 26.32 11.72 46.76 2.17
4873 5825 3.489738 GCCGCAACTTGATGCATCTATTT 60.490 43.478 26.32 16.60 46.76 1.40
4874 5826 2.033801 GCCGCAACTTGATGCATCTATT 59.966 45.455 26.32 14.94 46.76 1.73
4875 5827 1.605710 GCCGCAACTTGATGCATCTAT 59.394 47.619 26.32 9.86 46.76 1.98
4876 5828 1.016627 GCCGCAACTTGATGCATCTA 58.983 50.000 26.32 18.53 46.76 1.98
4877 5829 0.961857 TGCCGCAACTTGATGCATCT 60.962 50.000 26.32 4.61 46.76 2.90
4878 5830 0.109179 TTGCCGCAACTTGATGCATC 60.109 50.000 20.14 20.14 46.76 3.91
4879 5831 0.108992 CTTGCCGCAACTTGATGCAT 60.109 50.000 0.00 0.00 46.76 3.96
4880 5832 1.286570 CTTGCCGCAACTTGATGCA 59.713 52.632 0.38 0.00 46.76 3.96
4881 5833 2.090524 GCTTGCCGCAACTTGATGC 61.091 57.895 0.38 0.00 42.94 3.91
4882 5834 1.798725 CGCTTGCCGCAACTTGATG 60.799 57.895 0.38 0.00 39.08 3.07
4883 5835 2.562912 CGCTTGCCGCAACTTGAT 59.437 55.556 0.38 0.00 39.08 2.57
4892 5844 1.067199 GTCAATTTCAGCGCTTGCCG 61.067 55.000 7.50 0.00 40.41 5.69
4893 5845 0.039256 TGTCAATTTCAGCGCTTGCC 60.039 50.000 7.50 0.00 40.41 4.52
4894 5846 1.055338 GTGTCAATTTCAGCGCTTGC 58.945 50.000 7.50 0.19 39.58 4.01
4895 5847 2.404265 TGTGTCAATTTCAGCGCTTG 57.596 45.000 7.50 2.66 0.00 4.01
4896 5848 2.553602 TGATGTGTCAATTTCAGCGCTT 59.446 40.909 7.50 0.00 0.00 4.68
4897 5849 2.153645 TGATGTGTCAATTTCAGCGCT 58.846 42.857 2.64 2.64 0.00 5.92
4898 5850 2.617250 TGATGTGTCAATTTCAGCGC 57.383 45.000 0.00 0.00 0.00 5.92
4908 5860 1.840630 CGCGGCAACTTGATGTGTCA 61.841 55.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.