Multiple sequence alignment - TraesCS4B01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G290200 chr4B 100.000 4901 0 0 1 4901 574954438 574949538 0.000000e+00 9051.0
1 TraesCS4B01G290200 chr4B 87.266 267 34 0 1 267 614660626 614660892 6.160000e-79 305.0
2 TraesCS4B01G290200 chr4B 97.917 48 1 0 300 347 574954058 574954011 3.140000e-12 84.2
3 TraesCS4B01G290200 chr4B 97.917 48 1 0 381 428 574954139 574954092 3.140000e-12 84.2
4 TraesCS4B01G290200 chr4A 93.110 2627 117 30 1964 4555 7746348 7748945 0.000000e+00 3790.0
5 TraesCS4B01G290200 chr4A 87.959 1578 136 29 389 1933 7744795 7746351 0.000000e+00 1812.0
6 TraesCS4B01G290200 chr4A 89.506 324 16 4 4590 4901 7749020 7749337 1.280000e-105 394.0
7 TraesCS4B01G290200 chr4D 94.449 2432 108 16 2142 4555 460483196 460480774 0.000000e+00 3718.0
8 TraesCS4B01G290200 chr4D 89.292 1130 76 23 721 1829 460484689 460483584 0.000000e+00 1375.0
9 TraesCS4B01G290200 chr4D 92.169 332 22 4 389 719 460485375 460485047 2.670000e-127 466.0
10 TraesCS4B01G290200 chr4D 88.650 326 17 5 4590 4901 460480701 460480382 3.580000e-101 379.0
11 TraesCS4B01G290200 chr1B 85.668 307 40 4 1 305 373617911 373617607 2.200000e-83 320.0
12 TraesCS4B01G290200 chr1B 86.567 268 36 0 1 268 411576992 411577259 3.710000e-76 296.0
13 TraesCS4B01G290200 chr1B 86.692 263 35 0 1 263 411819949 411820211 4.800000e-75 292.0
14 TraesCS4B01G290200 chr3B 85.099 302 45 0 1 302 297235325 297235626 4.760000e-80 309.0
15 TraesCS4B01G290200 chr3B 87.313 268 32 2 1 268 787392523 787392788 6.160000e-79 305.0
16 TraesCS4B01G290200 chr3B 86.538 260 35 0 1 260 787351876 787352135 2.230000e-73 287.0
17 TraesCS4B01G290200 chr5D 85.821 268 38 0 1 268 193741999 193741732 8.030000e-73 285.0
18 TraesCS4B01G290200 chr2B 86.822 258 30 3 1 256 449619533 449619788 8.030000e-73 285.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G290200 chr4B 574949538 574954438 4900 True 3073.133333 9051 98.611333 1 4901 3 chr4B.!!$R1 4900
1 TraesCS4B01G290200 chr4A 7744795 7749337 4542 False 1998.666667 3790 90.191667 389 4901 3 chr4A.!!$F1 4512
2 TraesCS4B01G290200 chr4D 460480382 460485375 4993 True 1484.500000 3718 91.140000 389 4901 4 chr4D.!!$R1 4512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.027324 GACTCGTCCCATCGTACGAC 59.973 60.0 22.14 7.06 42.74 4.34 F
104 105 0.032130 CCCATCGTACGACCAGGATG 59.968 60.0 26.02 17.57 39.43 3.51 F
379 380 0.040058 TTGCATGCCTGGGTTCATCT 59.960 50.0 16.68 0.00 0.00 2.90 F
1570 1958 0.114364 ACCCCCAACCCAAAGATGTC 59.886 55.0 0.00 0.00 0.00 3.06 F
2159 2651 0.401738 ACTGCTGCTCCTAAAAGGCA 59.598 50.0 0.00 0.00 34.61 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2469 0.254178 AGTGGCCTGGTGCAGATTAG 59.746 55.000 3.32 0.0 43.89 1.73 R
2076 2526 3.784701 AGCGATACACCACTAGTTCAG 57.215 47.619 0.00 0.0 0.00 3.02 R
2334 2838 3.118956 AGAGAAGCGACCAACTGATAAGG 60.119 47.826 0.00 0.0 0.00 2.69 R
2511 3023 0.107703 GAACATGGATCACCGCTCCA 60.108 55.000 0.00 0.0 46.45 3.86 R
3979 4491 0.895100 TGGCAATCAAGGGTGTGCTC 60.895 55.000 0.00 0.0 37.17 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.570181 GCACTGTTGCCATGCCTC 59.430 61.111 0.00 0.00 43.66 4.70
25 26 1.975407 GCACTGTTGCCATGCCTCT 60.975 57.895 0.00 0.00 43.66 3.69
26 27 1.880894 CACTGTTGCCATGCCTCTG 59.119 57.895 0.00 0.00 0.00 3.35
27 28 0.892358 CACTGTTGCCATGCCTCTGT 60.892 55.000 0.00 0.00 0.00 3.41
28 29 0.178981 ACTGTTGCCATGCCTCTGTT 60.179 50.000 0.00 0.00 0.00 3.16
29 30 0.242825 CTGTTGCCATGCCTCTGTTG 59.757 55.000 0.00 0.00 0.00 3.33
30 31 1.180456 TGTTGCCATGCCTCTGTTGG 61.180 55.000 0.00 0.00 0.00 3.77
40 41 4.648007 TCTGTTGGCCAGAGGAGT 57.352 55.556 5.11 0.00 45.34 3.85
41 42 2.854253 TCTGTTGGCCAGAGGAGTT 58.146 52.632 5.11 0.00 45.34 3.01
42 43 0.397941 TCTGTTGGCCAGAGGAGTTG 59.602 55.000 5.11 0.00 45.34 3.16
43 44 0.607489 CTGTTGGCCAGAGGAGTTGG 60.607 60.000 5.11 0.00 44.49 3.77
44 45 1.352622 TGTTGGCCAGAGGAGTTGGT 61.353 55.000 5.11 0.00 38.02 3.67
45 46 0.890996 GTTGGCCAGAGGAGTTGGTG 60.891 60.000 5.11 0.00 38.02 4.17
46 47 2.067932 TTGGCCAGAGGAGTTGGTGG 62.068 60.000 5.11 0.00 38.02 4.61
47 48 2.352805 GCCAGAGGAGTTGGTGGG 59.647 66.667 0.00 0.00 38.02 4.61
48 49 3.081554 CCAGAGGAGTTGGTGGGG 58.918 66.667 0.00 0.00 0.00 4.96
49 50 2.352805 CAGAGGAGTTGGTGGGGC 59.647 66.667 0.00 0.00 0.00 5.80
50 51 2.121963 AGAGGAGTTGGTGGGGCA 60.122 61.111 0.00 0.00 0.00 5.36
51 52 2.034221 GAGGAGTTGGTGGGGCAC 59.966 66.667 0.00 0.00 0.00 5.01
52 53 2.450502 AGGAGTTGGTGGGGCACT 60.451 61.111 0.00 0.00 34.40 4.40
53 54 2.282462 GGAGTTGGTGGGGCACTG 60.282 66.667 0.00 0.00 34.40 3.66
54 55 2.515901 GAGTTGGTGGGGCACTGT 59.484 61.111 0.00 0.00 34.40 3.55
55 56 1.152756 GAGTTGGTGGGGCACTGTT 60.153 57.895 0.00 0.00 34.40 3.16
56 57 1.455383 GAGTTGGTGGGGCACTGTTG 61.455 60.000 0.00 0.00 34.40 3.33
65 66 2.666190 GCACTGTTGCCTCGCTCA 60.666 61.111 0.00 0.00 43.66 4.26
66 67 2.037136 GCACTGTTGCCTCGCTCAT 61.037 57.895 0.00 0.00 43.66 2.90
67 68 1.975363 GCACTGTTGCCTCGCTCATC 61.975 60.000 0.00 0.00 43.66 2.92
68 69 0.390866 CACTGTTGCCTCGCTCATCT 60.391 55.000 0.00 0.00 0.00 2.90
69 70 0.108424 ACTGTTGCCTCGCTCATCTC 60.108 55.000 0.00 0.00 0.00 2.75
70 71 0.175302 CTGTTGCCTCGCTCATCTCT 59.825 55.000 0.00 0.00 0.00 3.10
71 72 0.108472 TGTTGCCTCGCTCATCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
72 73 0.174389 GTTGCCTCGCTCATCTCTGA 59.826 55.000 0.00 0.00 0.00 3.27
73 74 0.897621 TTGCCTCGCTCATCTCTGAA 59.102 50.000 0.00 0.00 0.00 3.02
74 75 1.117994 TGCCTCGCTCATCTCTGAAT 58.882 50.000 0.00 0.00 0.00 2.57
75 76 1.202498 TGCCTCGCTCATCTCTGAATG 60.202 52.381 0.00 0.00 0.00 2.67
76 77 1.873069 GCCTCGCTCATCTCTGAATGG 60.873 57.143 0.00 0.00 0.00 3.16
77 78 1.685517 CCTCGCTCATCTCTGAATGGA 59.314 52.381 0.00 0.00 0.00 3.41
78 79 2.288334 CCTCGCTCATCTCTGAATGGAG 60.288 54.545 0.00 0.00 34.88 3.86
79 80 2.622470 CTCGCTCATCTCTGAATGGAGA 59.378 50.000 0.00 0.00 44.96 3.71
80 81 2.360483 TCGCTCATCTCTGAATGGAGAC 59.640 50.000 0.00 0.00 43.89 3.36
81 82 2.361757 CGCTCATCTCTGAATGGAGACT 59.638 50.000 0.00 0.00 43.89 3.24
82 83 3.550639 CGCTCATCTCTGAATGGAGACTC 60.551 52.174 0.00 0.00 43.89 3.36
83 84 3.550639 GCTCATCTCTGAATGGAGACTCG 60.551 52.174 0.00 0.00 43.89 4.18
84 85 3.625853 TCATCTCTGAATGGAGACTCGT 58.374 45.455 0.00 0.00 43.89 4.18
85 86 3.629855 TCATCTCTGAATGGAGACTCGTC 59.370 47.826 0.00 0.00 43.89 4.20
86 87 2.370349 TCTCTGAATGGAGACTCGTCC 58.630 52.381 0.00 0.00 37.43 4.79
87 88 1.407258 CTCTGAATGGAGACTCGTCCC 59.593 57.143 0.00 0.00 35.49 4.46
88 89 1.186200 CTGAATGGAGACTCGTCCCA 58.814 55.000 8.88 8.88 35.49 4.37
89 90 1.759445 CTGAATGGAGACTCGTCCCAT 59.241 52.381 11.75 11.75 40.18 4.00
90 91 1.757118 TGAATGGAGACTCGTCCCATC 59.243 52.381 15.63 11.56 38.68 3.51
91 92 0.747255 AATGGAGACTCGTCCCATCG 59.253 55.000 15.63 0.00 38.68 3.84
92 93 0.395862 ATGGAGACTCGTCCCATCGT 60.396 55.000 11.75 0.00 36.55 3.73
93 94 0.253894 TGGAGACTCGTCCCATCGTA 59.746 55.000 0.00 0.00 35.49 3.43
94 95 0.662085 GGAGACTCGTCCCATCGTAC 59.338 60.000 0.00 0.00 0.00 3.67
95 96 0.304098 GAGACTCGTCCCATCGTACG 59.696 60.000 9.53 9.53 40.40 3.67
96 97 0.107993 AGACTCGTCCCATCGTACGA 60.108 55.000 21.93 21.93 45.17 3.43
97 98 0.027324 GACTCGTCCCATCGTACGAC 59.973 60.000 22.14 7.06 42.74 4.34
98 99 1.354506 CTCGTCCCATCGTACGACC 59.645 63.158 22.14 5.45 42.74 4.79
99 100 1.371337 CTCGTCCCATCGTACGACCA 61.371 60.000 22.14 0.00 42.74 4.02
100 101 1.063649 CGTCCCATCGTACGACCAG 59.936 63.158 22.14 13.28 41.55 4.00
101 102 1.436336 GTCCCATCGTACGACCAGG 59.564 63.158 22.14 21.09 0.00 4.45
102 103 1.033746 GTCCCATCGTACGACCAGGA 61.034 60.000 26.02 24.15 0.00 3.86
103 104 0.106369 TCCCATCGTACGACCAGGAT 60.106 55.000 26.02 7.74 0.00 3.24
104 105 0.032130 CCCATCGTACGACCAGGATG 59.968 60.000 26.02 17.57 39.43 3.51
137 138 4.323477 CGTGGCCGGGTGAAGGAA 62.323 66.667 2.18 0.00 0.00 3.36
138 139 2.114411 GTGGCCGGGTGAAGGAAA 59.886 61.111 2.18 0.00 0.00 3.13
139 140 1.529713 GTGGCCGGGTGAAGGAAAA 60.530 57.895 2.18 0.00 0.00 2.29
140 141 1.529713 TGGCCGGGTGAAGGAAAAC 60.530 57.895 2.18 0.00 0.00 2.43
141 142 2.622962 GGCCGGGTGAAGGAAAACG 61.623 63.158 2.18 0.00 0.00 3.60
142 143 2.951458 CCGGGTGAAGGAAAACGC 59.049 61.111 0.00 0.00 0.00 4.84
143 144 2.622962 CCGGGTGAAGGAAAACGCC 61.623 63.158 0.00 0.00 36.13 5.68
144 145 2.951458 GGGTGAAGGAAAACGCCG 59.049 61.111 0.00 0.00 37.53 6.46
145 146 2.254350 GGTGAAGGAAAACGCCGC 59.746 61.111 0.00 0.00 0.00 6.53
146 147 2.548295 GGTGAAGGAAAACGCCGCA 61.548 57.895 0.00 0.00 0.00 5.69
147 148 1.082104 GTGAAGGAAAACGCCGCAG 60.082 57.895 0.00 0.00 0.00 5.18
161 162 2.914097 GCAGGGCAGTTGGCTTGT 60.914 61.111 16.91 0.00 46.84 3.16
162 163 2.501602 GCAGGGCAGTTGGCTTGTT 61.502 57.895 16.91 0.00 46.84 2.83
163 164 1.364901 CAGGGCAGTTGGCTTGTTG 59.635 57.895 9.24 0.00 41.65 3.33
164 165 1.833934 AGGGCAGTTGGCTTGTTGG 60.834 57.895 5.63 0.00 44.01 3.77
165 166 2.736531 GGCAGTTGGCTTGTTGGG 59.263 61.111 0.00 0.00 44.01 4.12
166 167 2.736531 GCAGTTGGCTTGTTGGGG 59.263 61.111 0.00 0.00 40.25 4.96
167 168 1.832167 GCAGTTGGCTTGTTGGGGA 60.832 57.895 0.00 0.00 40.25 4.81
168 169 1.398958 GCAGTTGGCTTGTTGGGGAA 61.399 55.000 0.00 0.00 40.25 3.97
169 170 0.675633 CAGTTGGCTTGTTGGGGAAG 59.324 55.000 0.00 0.00 0.00 3.46
170 171 1.115326 AGTTGGCTTGTTGGGGAAGC 61.115 55.000 0.00 0.00 44.32 3.86
173 174 4.198087 GCTTGTTGGGGAAGCCTT 57.802 55.556 0.00 0.00 40.03 4.35
174 175 1.667722 GCTTGTTGGGGAAGCCTTG 59.332 57.895 0.00 0.00 40.03 3.61
175 176 0.827507 GCTTGTTGGGGAAGCCTTGA 60.828 55.000 0.00 0.00 40.03 3.02
176 177 0.961753 CTTGTTGGGGAAGCCTTGAC 59.038 55.000 0.00 0.00 0.00 3.18
177 178 0.821711 TTGTTGGGGAAGCCTTGACG 60.822 55.000 0.00 0.00 0.00 4.35
178 179 1.228154 GTTGGGGAAGCCTTGACGT 60.228 57.895 0.00 0.00 0.00 4.34
179 180 1.228124 TTGGGGAAGCCTTGACGTG 60.228 57.895 0.00 0.00 0.00 4.49
180 181 3.056328 GGGGAAGCCTTGACGTGC 61.056 66.667 0.00 0.00 0.00 5.34
181 182 3.056328 GGGAAGCCTTGACGTGCC 61.056 66.667 0.00 0.00 0.00 5.01
182 183 2.032681 GGAAGCCTTGACGTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
183 184 2.328099 GGAAGCCTTGACGTGCCTG 61.328 63.158 0.00 0.00 0.00 4.85
184 185 2.281761 AAGCCTTGACGTGCCTGG 60.282 61.111 0.00 0.00 0.00 4.45
185 186 3.120086 AAGCCTTGACGTGCCTGGT 62.120 57.895 0.00 0.00 0.00 4.00
186 187 2.594592 GCCTTGACGTGCCTGGTT 60.595 61.111 0.00 0.00 0.00 3.67
187 188 2.617274 GCCTTGACGTGCCTGGTTC 61.617 63.158 0.00 0.00 0.00 3.62
188 189 1.966451 CCTTGACGTGCCTGGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
189 190 2.280524 TTGACGTGCCTGGTTCCG 60.281 61.111 0.00 0.00 0.00 4.30
190 191 4.980805 TGACGTGCCTGGTTCCGC 62.981 66.667 0.00 0.00 0.00 5.54
227 228 4.660938 GGGCCGGGCTGTTGTCTT 62.661 66.667 28.80 0.00 0.00 3.01
228 229 3.365265 GGCCGGGCTGTTGTCTTG 61.365 66.667 22.87 0.00 0.00 3.02
229 230 2.281484 GCCGGGCTGTTGTCTTGA 60.281 61.111 12.87 0.00 0.00 3.02
230 231 1.675641 GCCGGGCTGTTGTCTTGAT 60.676 57.895 12.87 0.00 0.00 2.57
231 232 1.244019 GCCGGGCTGTTGTCTTGATT 61.244 55.000 12.87 0.00 0.00 2.57
232 233 0.523072 CCGGGCTGTTGTCTTGATTG 59.477 55.000 0.00 0.00 0.00 2.67
233 234 1.238439 CGGGCTGTTGTCTTGATTGT 58.762 50.000 0.00 0.00 0.00 2.71
234 235 1.069022 CGGGCTGTTGTCTTGATTGTG 60.069 52.381 0.00 0.00 0.00 3.33
235 236 1.956477 GGGCTGTTGTCTTGATTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
236 237 2.362077 GGGCTGTTGTCTTGATTGTGTT 59.638 45.455 0.00 0.00 0.00 3.32
237 238 3.374745 GGCTGTTGTCTTGATTGTGTTG 58.625 45.455 0.00 0.00 0.00 3.33
238 239 3.066621 GGCTGTTGTCTTGATTGTGTTGA 59.933 43.478 0.00 0.00 0.00 3.18
239 240 4.439974 GGCTGTTGTCTTGATTGTGTTGAA 60.440 41.667 0.00 0.00 0.00 2.69
240 241 4.736793 GCTGTTGTCTTGATTGTGTTGAAG 59.263 41.667 0.00 0.00 0.00 3.02
241 242 5.449041 GCTGTTGTCTTGATTGTGTTGAAGA 60.449 40.000 0.00 0.00 0.00 2.87
242 243 6.122850 TGTTGTCTTGATTGTGTTGAAGAG 57.877 37.500 0.00 0.00 0.00 2.85
243 244 5.647658 TGTTGTCTTGATTGTGTTGAAGAGT 59.352 36.000 0.00 0.00 0.00 3.24
244 245 6.150976 TGTTGTCTTGATTGTGTTGAAGAGTT 59.849 34.615 0.00 0.00 0.00 3.01
245 246 6.363577 TGTCTTGATTGTGTTGAAGAGTTC 57.636 37.500 0.00 0.00 0.00 3.01
246 247 5.006649 TGTCTTGATTGTGTTGAAGAGTTCG 59.993 40.000 0.00 0.00 0.00 3.95
247 248 4.511454 TCTTGATTGTGTTGAAGAGTTCGG 59.489 41.667 0.00 0.00 0.00 4.30
248 249 2.548057 TGATTGTGTTGAAGAGTTCGGC 59.452 45.455 0.00 0.00 0.00 5.54
249 250 1.305201 TTGTGTTGAAGAGTTCGGCC 58.695 50.000 0.00 0.00 0.00 6.13
250 251 0.878523 TGTGTTGAAGAGTTCGGCCG 60.879 55.000 22.12 22.12 0.00 6.13
251 252 1.301401 TGTTGAAGAGTTCGGCCGG 60.301 57.895 27.83 6.80 0.00 6.13
252 253 2.033194 GTTGAAGAGTTCGGCCGGG 61.033 63.158 27.83 0.00 0.00 5.73
253 254 2.513259 TTGAAGAGTTCGGCCGGGT 61.513 57.895 27.83 10.27 0.00 5.28
254 255 2.047213 TTGAAGAGTTCGGCCGGGTT 62.047 55.000 27.83 10.89 0.00 4.11
255 256 2.032071 AAGAGTTCGGCCGGGTTG 59.968 61.111 27.83 0.00 0.00 3.77
256 257 2.444700 GAAGAGTTCGGCCGGGTTGA 62.445 60.000 27.83 1.12 0.00 3.18
257 258 2.434359 GAGTTCGGCCGGGTTGAG 60.434 66.667 27.83 0.00 0.00 3.02
258 259 3.952628 GAGTTCGGCCGGGTTGAGG 62.953 68.421 27.83 0.00 0.00 3.86
275 276 4.373116 GGACTCGGCCAAGCGTGA 62.373 66.667 2.24 0.00 0.00 4.35
276 277 2.357034 GACTCGGCCAAGCGTGAA 60.357 61.111 2.24 0.00 0.00 3.18
277 278 2.665185 ACTCGGCCAAGCGTGAAC 60.665 61.111 2.24 0.00 0.00 3.18
278 279 3.423154 CTCGGCCAAGCGTGAACC 61.423 66.667 2.24 1.21 0.00 3.62
282 283 3.723348 GCCAAGCGTGAACCGGAC 61.723 66.667 9.46 1.77 36.94 4.79
283 284 2.030562 CCAAGCGTGAACCGGACT 59.969 61.111 9.46 0.00 36.94 3.85
284 285 2.317609 CCAAGCGTGAACCGGACTG 61.318 63.158 9.46 0.28 36.94 3.51
285 286 1.300620 CAAGCGTGAACCGGACTGA 60.301 57.895 9.46 0.00 36.94 3.41
286 287 1.006102 AAGCGTGAACCGGACTGAG 60.006 57.895 9.46 0.00 36.94 3.35
287 288 2.432628 GCGTGAACCGGACTGAGG 60.433 66.667 9.46 0.00 36.94 3.86
288 289 2.261671 CGTGAACCGGACTGAGGG 59.738 66.667 9.46 0.00 0.00 4.30
289 290 2.663196 GTGAACCGGACTGAGGGG 59.337 66.667 9.46 0.00 0.00 4.79
290 291 3.319198 TGAACCGGACTGAGGGGC 61.319 66.667 9.46 0.00 0.00 5.80
291 292 4.452733 GAACCGGACTGAGGGGCG 62.453 72.222 9.46 0.00 0.00 6.13
295 296 4.436998 CGGACTGAGGGGCGACAC 62.437 72.222 0.00 0.00 0.00 3.67
307 308 4.082523 CGACACTGGCCCCGACAT 62.083 66.667 0.00 0.00 0.00 3.06
308 309 2.717044 CGACACTGGCCCCGACATA 61.717 63.158 0.00 0.00 0.00 2.29
309 310 1.830145 GACACTGGCCCCGACATAT 59.170 57.895 0.00 0.00 0.00 1.78
310 311 1.045407 GACACTGGCCCCGACATATA 58.955 55.000 0.00 0.00 0.00 0.86
311 312 1.000955 GACACTGGCCCCGACATATAG 59.999 57.143 0.00 0.00 0.00 1.31
312 313 1.048601 CACTGGCCCCGACATATAGT 58.951 55.000 0.00 0.00 0.00 2.12
313 314 1.000955 CACTGGCCCCGACATATAGTC 59.999 57.143 0.00 0.00 44.02 2.59
314 315 1.133136 ACTGGCCCCGACATATAGTCT 60.133 52.381 0.00 0.00 45.32 3.24
315 316 1.273606 CTGGCCCCGACATATAGTCTG 59.726 57.143 0.00 0.00 45.32 3.51
316 317 1.339097 GGCCCCGACATATAGTCTGT 58.661 55.000 0.00 0.00 45.32 3.41
317 318 1.272769 GGCCCCGACATATAGTCTGTC 59.727 57.143 0.00 0.00 45.32 3.51
318 319 2.240279 GCCCCGACATATAGTCTGTCT 58.760 52.381 4.02 0.00 45.32 3.41
319 320 3.418995 GCCCCGACATATAGTCTGTCTA 58.581 50.000 4.02 0.00 45.32 2.59
320 321 3.440872 GCCCCGACATATAGTCTGTCTAG 59.559 52.174 4.02 0.00 45.32 2.43
321 322 4.806625 GCCCCGACATATAGTCTGTCTAGA 60.807 50.000 4.02 0.00 45.32 2.43
322 323 5.314529 CCCCGACATATAGTCTGTCTAGAA 58.685 45.833 0.00 0.00 45.32 2.10
323 324 5.946972 CCCCGACATATAGTCTGTCTAGAAT 59.053 44.000 0.00 0.00 45.32 2.40
324 325 6.434652 CCCCGACATATAGTCTGTCTAGAATT 59.565 42.308 0.00 0.00 45.32 2.17
325 326 7.610692 CCCCGACATATAGTCTGTCTAGAATTA 59.389 40.741 0.00 0.00 45.32 1.40
326 327 9.179909 CCCGACATATAGTCTGTCTAGAATTAT 57.820 37.037 0.00 0.00 45.32 1.28
350 351 8.986477 ATAAGCACATAACATTTGAAAAGACC 57.014 30.769 0.00 0.00 0.00 3.85
351 352 6.403866 AGCACATAACATTTGAAAAGACCA 57.596 33.333 0.00 0.00 0.00 4.02
352 353 6.815089 AGCACATAACATTTGAAAAGACCAA 58.185 32.000 0.00 0.00 0.00 3.67
353 354 6.925165 AGCACATAACATTTGAAAAGACCAAG 59.075 34.615 0.00 0.00 0.00 3.61
354 355 6.146021 GCACATAACATTTGAAAAGACCAAGG 59.854 38.462 0.00 0.00 0.00 3.61
355 356 7.209475 CACATAACATTTGAAAAGACCAAGGT 58.791 34.615 0.00 0.00 0.00 3.50
356 357 7.710475 CACATAACATTTGAAAAGACCAAGGTT 59.290 33.333 0.00 0.00 32.07 3.50
357 358 7.926018 ACATAACATTTGAAAAGACCAAGGTTC 59.074 33.333 0.00 0.00 30.82 3.62
358 359 5.276461 ACATTTGAAAAGACCAAGGTTCC 57.724 39.130 0.00 0.00 0.00 3.62
359 360 4.714308 ACATTTGAAAAGACCAAGGTTCCA 59.286 37.500 0.00 0.00 0.00 3.53
360 361 5.366477 ACATTTGAAAAGACCAAGGTTCCAT 59.634 36.000 0.00 0.00 0.00 3.41
361 362 5.948742 TTTGAAAAGACCAAGGTTCCATT 57.051 34.783 0.00 0.00 0.00 3.16
362 363 4.935352 TGAAAAGACCAAGGTTCCATTG 57.065 40.909 0.00 0.00 0.00 2.82
363 364 3.069443 TGAAAAGACCAAGGTTCCATTGC 59.931 43.478 0.00 0.00 0.00 3.56
364 365 2.380064 AAGACCAAGGTTCCATTGCA 57.620 45.000 0.00 0.00 0.00 4.08
365 366 2.610438 AGACCAAGGTTCCATTGCAT 57.390 45.000 0.00 0.00 0.00 3.96
366 367 2.173519 AGACCAAGGTTCCATTGCATG 58.826 47.619 0.00 0.00 0.00 4.06
367 368 0.609662 ACCAAGGTTCCATTGCATGC 59.390 50.000 11.82 11.82 0.00 4.06
368 369 0.108041 CCAAGGTTCCATTGCATGCC 60.108 55.000 16.68 0.00 0.00 4.40
369 370 0.899720 CAAGGTTCCATTGCATGCCT 59.100 50.000 16.68 0.00 0.00 4.75
370 371 0.899720 AAGGTTCCATTGCATGCCTG 59.100 50.000 16.68 12.62 0.00 4.85
371 372 0.974010 AGGTTCCATTGCATGCCTGG 60.974 55.000 23.80 23.80 0.00 4.45
372 373 1.518774 GTTCCATTGCATGCCTGGG 59.481 57.895 27.14 19.91 0.00 4.45
373 374 1.078891 TTCCATTGCATGCCTGGGT 59.921 52.632 27.14 4.47 0.00 4.51
374 375 0.544833 TTCCATTGCATGCCTGGGTT 60.545 50.000 27.14 1.82 0.00 4.11
375 376 0.971959 TCCATTGCATGCCTGGGTTC 60.972 55.000 27.14 0.00 0.00 3.62
376 377 1.259142 CCATTGCATGCCTGGGTTCA 61.259 55.000 22.63 0.00 0.00 3.18
377 378 0.828022 CATTGCATGCCTGGGTTCAT 59.172 50.000 16.68 0.00 0.00 2.57
378 379 1.117150 ATTGCATGCCTGGGTTCATC 58.883 50.000 16.68 0.00 0.00 2.92
379 380 0.040058 TTGCATGCCTGGGTTCATCT 59.960 50.000 16.68 0.00 0.00 2.90
380 381 0.394762 TGCATGCCTGGGTTCATCTC 60.395 55.000 16.68 0.00 0.00 2.75
381 382 1.105759 GCATGCCTGGGTTCATCTCC 61.106 60.000 6.36 0.00 0.00 3.71
382 383 0.466922 CATGCCTGGGTTCATCTCCC 60.467 60.000 0.00 0.00 44.81 4.30
383 384 1.649271 ATGCCTGGGTTCATCTCCCC 61.649 60.000 0.00 0.00 44.00 4.81
384 385 2.911143 CCTGGGTTCATCTCCCCG 59.089 66.667 0.00 0.00 44.44 5.73
385 386 1.689233 CCTGGGTTCATCTCCCCGA 60.689 63.158 0.00 0.00 44.44 5.14
386 387 1.522569 CTGGGTTCATCTCCCCGAC 59.477 63.158 0.00 0.00 44.44 4.79
387 388 1.229368 TGGGTTCATCTCCCCGACA 60.229 57.895 0.00 0.00 44.44 4.35
407 408 8.307483 CCCGACATATAGTCTGTCAAGAATTAT 58.693 37.037 5.94 0.00 45.32 1.28
474 477 9.956720 ACATTAAGATCAGAAGAACACAAAAAG 57.043 29.630 0.00 0.00 0.00 2.27
475 478 8.909671 CATTAAGATCAGAAGAACACAAAAAGC 58.090 33.333 0.00 0.00 0.00 3.51
477 480 4.889409 AGATCAGAAGAACACAAAAAGCCA 59.111 37.500 0.00 0.00 0.00 4.75
478 481 5.537674 AGATCAGAAGAACACAAAAAGCCAT 59.462 36.000 0.00 0.00 0.00 4.40
479 482 4.935702 TCAGAAGAACACAAAAAGCCATG 58.064 39.130 0.00 0.00 0.00 3.66
480 483 4.644234 TCAGAAGAACACAAAAAGCCATGA 59.356 37.500 0.00 0.00 0.00 3.07
481 484 4.741676 CAGAAGAACACAAAAAGCCATGAC 59.258 41.667 0.00 0.00 0.00 3.06
482 485 4.402155 AGAAGAACACAAAAAGCCATGACA 59.598 37.500 0.00 0.00 0.00 3.58
484 487 5.280654 AGAACACAAAAAGCCATGACAAT 57.719 34.783 0.00 0.00 0.00 2.71
489 492 7.481275 ACACAAAAAGCCATGACAATTAAAG 57.519 32.000 0.00 0.00 0.00 1.85
511 514 5.687780 AGAAACAGATATGATGCATCACCA 58.312 37.500 30.92 21.43 40.03 4.17
595 598 9.030452 TGCAAATCCACAGTAAATAATTAACCT 57.970 29.630 0.00 0.00 0.00 3.50
596 599 9.869757 GCAAATCCACAGTAAATAATTAACCTT 57.130 29.630 0.00 0.00 0.00 3.50
699 705 1.133025 AGCATGTGAAATTGTAGCCGC 59.867 47.619 0.00 0.00 0.00 6.53
724 1087 7.537596 TGAAGGACATCAATGGTTGTAAAAT 57.462 32.000 0.00 0.00 0.00 1.82
729 1092 7.235399 AGGACATCAATGGTTGTAAAATTTCCT 59.765 33.333 0.00 0.00 0.00 3.36
781 1144 7.067372 TGTGTAAGAAAAATATCAGATGGCCAG 59.933 37.037 13.05 0.00 0.00 4.85
785 1148 5.773680 AGAAAAATATCAGATGGCCAGGATG 59.226 40.000 21.38 15.36 0.00 3.51
786 1149 2.803030 ATATCAGATGGCCAGGATGC 57.197 50.000 21.38 6.04 31.97 3.91
787 1150 1.738474 TATCAGATGGCCAGGATGCT 58.262 50.000 21.38 10.65 31.97 3.79
788 1151 0.851469 ATCAGATGGCCAGGATGCTT 59.149 50.000 13.05 0.00 31.97 3.91
789 1152 1.510492 TCAGATGGCCAGGATGCTTA 58.490 50.000 13.05 0.00 31.97 3.09
790 1153 1.419012 TCAGATGGCCAGGATGCTTAG 59.581 52.381 13.05 0.00 31.97 2.18
791 1154 1.142465 CAGATGGCCAGGATGCTTAGT 59.858 52.381 13.05 0.00 31.97 2.24
792 1155 1.849039 AGATGGCCAGGATGCTTAGTT 59.151 47.619 13.05 0.00 31.97 2.24
883 1246 2.024941 ACAAGAGGATCCAATTCCCCAC 60.025 50.000 15.82 0.00 36.35 4.61
890 1253 3.523157 GGATCCAATTCCCCACCATTTTT 59.477 43.478 6.95 0.00 0.00 1.94
950 1320 2.677613 GCCAACGGGATACTTAAACGGA 60.678 50.000 0.00 0.00 35.59 4.69
1304 1674 1.992277 AGGTGAGGAGATGCGGCTT 60.992 57.895 0.00 0.00 0.00 4.35
1318 1688 1.282875 GGCTTGGTCTTTGTCGTGC 59.717 57.895 0.00 0.00 0.00 5.34
1328 1709 2.089887 TTTGTCGTGCGCTCCCTGTA 62.090 55.000 9.73 0.00 0.00 2.74
1357 1738 1.160137 GTCGATTGAAGCTGCTTGGT 58.840 50.000 21.25 5.03 0.00 3.67
1379 1760 1.021390 CACCACTGCGGATTCCAGTC 61.021 60.000 0.00 0.00 41.34 3.51
1441 1824 6.834168 AATAGTTGTTTTGGTGGATCGATT 57.166 33.333 0.00 0.00 0.00 3.34
1523 1907 5.394224 AGAGGTGTGTTTCTTAGTAGAGC 57.606 43.478 0.00 0.00 0.00 4.09
1570 1958 0.114364 ACCCCCAACCCAAAGATGTC 59.886 55.000 0.00 0.00 0.00 3.06
1592 1980 3.967332 ATTCTGGGATTGCTTTGGTTG 57.033 42.857 0.00 0.00 0.00 3.77
1593 1981 1.631405 TCTGGGATTGCTTTGGTTGG 58.369 50.000 0.00 0.00 0.00 3.77
1597 1985 2.978278 TGGGATTGCTTTGGTTGGAAAT 59.022 40.909 0.00 0.00 0.00 2.17
1602 1990 5.065090 GGATTGCTTTGGTTGGAAATTATGC 59.935 40.000 0.00 0.00 0.00 3.14
1603 1991 4.888326 TGCTTTGGTTGGAAATTATGCT 57.112 36.364 0.00 0.00 0.00 3.79
1606 1994 6.162777 TGCTTTGGTTGGAAATTATGCTTAC 58.837 36.000 0.00 0.00 0.00 2.34
1609 1997 7.531857 TTTGGTTGGAAATTATGCTTACTGA 57.468 32.000 0.00 0.00 0.00 3.41
1628 2016 2.290896 TGAAGCTCATGTACAAAGGGGG 60.291 50.000 0.00 0.00 0.00 5.40
1634 2022 4.082408 GCTCATGTACAAAGGGGGTAAAAC 60.082 45.833 0.00 0.00 0.00 2.43
1730 2121 1.304381 ATGCGGGCTGGAACATTGT 60.304 52.632 0.00 0.00 38.20 2.71
1843 2284 5.118990 AGATGGATGTTAGTTTCATGTCCG 58.881 41.667 0.00 0.00 0.00 4.79
1885 2326 1.511850 TGCTTCAACATCTGGTCGTG 58.488 50.000 0.00 0.00 0.00 4.35
1886 2327 0.798776 GCTTCAACATCTGGTCGTGG 59.201 55.000 0.00 0.00 0.00 4.94
1918 2359 3.119990 TGGCGATAAAAGCAGTAAAGCAC 60.120 43.478 0.00 0.00 36.85 4.40
1921 2362 4.569029 CGATAAAAGCAGTAAAGCACGAG 58.431 43.478 0.00 0.00 36.85 4.18
1933 2375 1.583054 AGCACGAGACCACTTTGTTC 58.417 50.000 0.00 0.00 0.00 3.18
1939 2381 2.224079 CGAGACCACTTTGTTCCATGTG 59.776 50.000 0.00 0.00 0.00 3.21
1940 2382 3.476552 GAGACCACTTTGTTCCATGTGA 58.523 45.455 0.00 0.00 32.72 3.58
1941 2383 4.074970 GAGACCACTTTGTTCCATGTGAT 58.925 43.478 0.00 0.00 32.72 3.06
1942 2384 4.473444 AGACCACTTTGTTCCATGTGATT 58.527 39.130 0.00 0.00 32.72 2.57
1946 2388 4.202243 CCACTTTGTTCCATGTGATTTGGT 60.202 41.667 0.00 0.00 35.64 3.67
1947 2389 5.010516 CCACTTTGTTCCATGTGATTTGGTA 59.989 40.000 0.00 0.00 35.64 3.25
1960 2409 9.747293 CATGTGATTTGGTAATATTATGTGCAA 57.253 29.630 0.00 0.00 0.00 4.08
1994 2443 7.147828 TGGTTGGTAAACAATCTGATTTGTTCA 60.148 33.333 14.26 8.69 46.33 3.18
2020 2469 3.756963 CACTTAGGCTTGAGGTTTTACCC 59.243 47.826 0.00 0.00 39.75 3.69
2030 2479 4.585879 TGAGGTTTTACCCTAATCTGCAC 58.414 43.478 0.00 0.00 39.75 4.57
2037 2487 1.609239 CCTAATCTGCACCAGGCCA 59.391 57.895 5.01 0.00 43.89 5.36
2049 2499 2.691663 CAGGCCACTGGGGTACTTA 58.308 57.895 5.01 0.00 41.13 2.24
2071 2521 7.338449 ACTTAGGTTGTTTTGCTTACTCTTTCA 59.662 33.333 0.00 0.00 0.00 2.69
2076 2526 8.328146 GGTTGTTTTGCTTACTCTTTCAATTTC 58.672 33.333 0.00 0.00 0.00 2.17
2112 2570 7.167801 GGTGTATCGCTAGTAATCTTTCAACTC 59.832 40.741 0.00 0.00 0.00 3.01
2132 2590 7.960738 TCAACTCGCAGTTTGTTTATAATAAGC 59.039 33.333 0.00 0.00 36.03 3.09
2133 2591 6.782150 ACTCGCAGTTTGTTTATAATAAGCC 58.218 36.000 0.00 0.00 0.00 4.35
2134 2592 6.373216 ACTCGCAGTTTGTTTATAATAAGCCA 59.627 34.615 0.00 0.00 0.00 4.75
2158 2650 2.403252 TACTGCTGCTCCTAAAAGGC 57.597 50.000 0.00 0.00 34.61 4.35
2159 2651 0.401738 ACTGCTGCTCCTAAAAGGCA 59.598 50.000 0.00 0.00 34.61 4.75
2166 2658 4.517285 CTGCTCCTAAAAGGCAATGTCTA 58.483 43.478 0.00 0.00 34.61 2.59
2200 2700 7.225931 GTGAGTTTAATATGGCGTCATTCCTTA 59.774 37.037 8.30 1.50 34.96 2.69
2225 2725 7.807198 AGATTAGTTTAGATTCCCCTTTCCTC 58.193 38.462 0.00 0.00 0.00 3.71
2326 2830 8.980596 TGAATAAAATTCTTGGGATGTAGCATT 58.019 29.630 1.70 0.00 0.00 3.56
2332 2836 6.553953 TTCTTGGGATGTAGCATTAGTACA 57.446 37.500 0.00 0.00 34.92 2.90
2347 2859 6.992715 GCATTAGTACATCCTTATCAGTTGGT 59.007 38.462 0.00 0.00 0.00 3.67
2349 2861 5.263968 AGTACATCCTTATCAGTTGGTCG 57.736 43.478 0.00 0.00 0.00 4.79
2359 2871 4.744795 ATCAGTTGGTCGCTTCTCTTAT 57.255 40.909 0.00 0.00 0.00 1.73
2454 2966 3.893813 ACTCTGAAGGCAAGAAATTTGCT 59.106 39.130 11.18 0.00 44.36 3.91
2472 2984 3.614092 TGCTCTTCATCTTGTTCCATCC 58.386 45.455 0.00 0.00 0.00 3.51
2511 3023 1.824230 ACACTGTGTGTTGTTGGCAAT 59.176 42.857 13.50 0.00 45.08 3.56
2544 3056 1.895131 CATGTTCCAGGGTTCTTTGGG 59.105 52.381 0.00 0.00 35.13 4.12
2586 3098 2.751259 CAATGGAGTCAGTTGTGATGGG 59.249 50.000 0.00 0.00 34.36 4.00
2595 3107 5.958380 AGTCAGTTGTGATGGGAGAATACTA 59.042 40.000 0.00 0.00 34.36 1.82
2598 3110 6.440647 TCAGTTGTGATGGGAGAATACTAGTT 59.559 38.462 0.00 0.00 0.00 2.24
2604 3116 7.345653 TGTGATGGGAGAATACTAGTTTCTGAT 59.654 37.037 18.82 11.14 33.65 2.90
2610 3122 4.039366 AGAATACTAGTTTCTGATCGGGCC 59.961 45.833 15.24 0.00 32.30 5.80
2628 3140 3.290710 GGCCCATTTGCTCTTTGATCTA 58.709 45.455 0.00 0.00 0.00 1.98
2658 3170 3.964031 CTGTAGATGGACTTAGGGAAGCT 59.036 47.826 0.00 0.00 35.97 3.74
3063 3575 3.661648 ACCGGCCTTGGGATTGCT 61.662 61.111 0.00 0.00 0.00 3.91
3138 3650 9.855823 AATCCAGCCCTCATCTATGATATATAT 57.144 33.333 0.00 0.00 36.02 0.86
3388 3900 3.262420 CTTGATGTTCTGTCCGGGTTAG 58.738 50.000 0.00 0.00 0.00 2.34
3509 4021 7.771183 AGTGTCATAGTTTGTTCATTGTGTTT 58.229 30.769 0.00 0.00 0.00 2.83
3510 4022 8.250332 AGTGTCATAGTTTGTTCATTGTGTTTT 58.750 29.630 0.00 0.00 0.00 2.43
3523 4035 6.902341 TCATTGTGTTTTTACATCTCTGAGC 58.098 36.000 0.00 0.00 0.00 4.26
3544 4056 7.706159 TGAGCAGTACCTTTGCATAATTTATG 58.294 34.615 11.35 11.35 43.92 1.90
3609 4121 5.100751 AGATGCGATTTAGTTGCTAATGC 57.899 39.130 0.00 0.00 38.13 3.56
3627 4139 3.762407 TGCACTGGCTTTAGTTCTGTA 57.238 42.857 0.00 0.00 41.91 2.74
3747 4259 2.497675 TCAGGTCAACTATGAGGTGCTC 59.502 50.000 0.00 0.00 35.88 4.26
3795 4307 4.823442 TCTGTCCGAAGTTACAGTGAACTA 59.177 41.667 0.00 0.00 42.96 2.24
3840 4352 3.219281 GGAGAGGATAGAAGAGCTCGTT 58.781 50.000 8.37 2.98 0.00 3.85
3870 4382 1.274167 GTCCACTACATTGGTGTCGGA 59.726 52.381 0.00 0.00 39.77 4.55
3901 4413 7.093112 GGAGGGATGCTCTGATATACAAGTAAT 60.093 40.741 0.00 0.00 0.00 1.89
3936 4448 4.572985 TTGGTACTATTGTATCGGACGG 57.427 45.455 0.00 0.00 32.63 4.79
4149 4661 3.040147 TGTCTTTCGACTCCACCAATC 57.960 47.619 0.00 0.00 40.86 2.67
4186 4699 6.976088 TGTCACAATTCACCGTCATATTTTT 58.024 32.000 0.00 0.00 0.00 1.94
4244 4757 5.679906 CAAGTCTGATGTAAGTTTTCACCG 58.320 41.667 0.00 0.00 0.00 4.94
4245 4758 4.957296 AGTCTGATGTAAGTTTTCACCGT 58.043 39.130 0.00 0.00 0.00 4.83
4258 4771 5.236911 AGTTTTCACCGTGTTTATTTCGCTA 59.763 36.000 0.00 0.00 0.00 4.26
4267 4780 3.244981 TGTTTATTTCGCTAGTTGGGGGT 60.245 43.478 0.00 0.00 0.00 4.95
4318 4831 4.554330 GCATCGATCTTCTTGCTTTGGATC 60.554 45.833 0.00 0.00 32.41 3.36
4442 4958 2.558359 GTCTCATTTTCCTGGTTGTGGG 59.442 50.000 0.00 0.00 0.00 4.61
4444 4960 3.075882 TCTCATTTTCCTGGTTGTGGGAT 59.924 43.478 0.00 0.00 0.00 3.85
4524 5040 6.506500 AACAGATCTAAAACTTCATGCCAG 57.493 37.500 0.00 0.00 0.00 4.85
4539 5055 4.511527 CATGCCAGACTACATGAAGAACT 58.488 43.478 10.71 0.00 45.23 3.01
4555 5071 4.984146 AGAACTTGGAAGCTAAACCTCT 57.016 40.909 0.00 0.00 0.00 3.69
4556 5072 4.900684 AGAACTTGGAAGCTAAACCTCTC 58.099 43.478 0.00 0.00 0.00 3.20
4558 5074 4.917906 ACTTGGAAGCTAAACCTCTCAT 57.082 40.909 0.00 0.00 0.00 2.90
4559 5075 4.837972 ACTTGGAAGCTAAACCTCTCATC 58.162 43.478 0.00 0.00 0.00 2.92
4560 5076 4.287067 ACTTGGAAGCTAAACCTCTCATCA 59.713 41.667 0.00 0.00 0.00 3.07
4561 5077 4.478206 TGGAAGCTAAACCTCTCATCAG 57.522 45.455 0.00 0.00 0.00 2.90
4565 5081 5.163364 GGAAGCTAAACCTCTCATCAGATCA 60.163 44.000 0.00 0.00 0.00 2.92
4566 5082 5.534207 AGCTAAACCTCTCATCAGATCAG 57.466 43.478 0.00 0.00 0.00 2.90
4567 5083 5.207354 AGCTAAACCTCTCATCAGATCAGA 58.793 41.667 0.00 0.00 0.00 3.27
4569 5085 5.068987 GCTAAACCTCTCATCAGATCAGACT 59.931 44.000 0.00 0.00 0.00 3.24
4571 5087 2.694628 ACCTCTCATCAGATCAGACTGC 59.305 50.000 0.00 0.00 37.75 4.40
4572 5088 2.694109 CCTCTCATCAGATCAGACTGCA 59.306 50.000 0.00 0.00 37.75 4.41
4573 5089 3.322541 CCTCTCATCAGATCAGACTGCAT 59.677 47.826 0.00 0.00 37.75 3.96
4574 5090 4.303282 CTCTCATCAGATCAGACTGCATG 58.697 47.826 0.00 0.00 37.75 4.06
4575 5091 3.705072 TCTCATCAGATCAGACTGCATGT 59.295 43.478 0.00 0.00 37.75 3.21
4576 5092 4.891756 TCTCATCAGATCAGACTGCATGTA 59.108 41.667 0.00 0.00 37.75 2.29
4577 5093 5.009811 TCTCATCAGATCAGACTGCATGTAG 59.990 44.000 9.50 9.50 37.75 2.74
4579 5095 5.539193 TCATCAGATCAGACTGCATGTAGAT 59.461 40.000 18.40 0.07 37.75 1.98
4580 5096 5.450592 TCAGATCAGACTGCATGTAGATC 57.549 43.478 18.40 9.87 39.03 2.75
4581 5097 4.023365 TCAGATCAGACTGCATGTAGATCG 60.023 45.833 18.40 4.94 41.37 3.69
4582 5098 3.255395 AGATCAGACTGCATGTAGATCGG 59.745 47.826 18.40 11.42 41.37 4.18
4583 5099 2.654863 TCAGACTGCATGTAGATCGGA 58.345 47.619 18.40 13.32 0.00 4.55
4584 5100 3.023832 TCAGACTGCATGTAGATCGGAA 58.976 45.455 18.40 0.92 0.00 4.30
4585 5101 3.067320 TCAGACTGCATGTAGATCGGAAG 59.933 47.826 18.40 5.28 0.00 3.46
4586 5102 3.027412 AGACTGCATGTAGATCGGAAGT 58.973 45.455 18.40 0.00 0.00 3.01
4587 5103 3.067461 AGACTGCATGTAGATCGGAAGTC 59.933 47.826 18.40 2.76 34.40 3.01
4589 5105 3.449018 ACTGCATGTAGATCGGAAGTCTT 59.551 43.478 18.40 0.00 0.00 3.01
4591 5107 5.127194 ACTGCATGTAGATCGGAAGTCTTAA 59.873 40.000 18.40 0.00 0.00 1.85
4592 5108 5.592054 TGCATGTAGATCGGAAGTCTTAAG 58.408 41.667 0.00 0.00 0.00 1.85
4593 5109 5.359860 TGCATGTAGATCGGAAGTCTTAAGA 59.640 40.000 0.00 0.00 0.00 2.10
4595 5111 6.926272 GCATGTAGATCGGAAGTCTTAAGAAT 59.074 38.462 6.78 2.45 0.00 2.40
4596 5112 8.082852 GCATGTAGATCGGAAGTCTTAAGAATA 58.917 37.037 6.78 0.00 0.00 1.75
4630 5188 3.556306 ATACGGGGATGGGCACGG 61.556 66.667 0.00 0.00 0.00 4.94
4749 5310 2.126031 GCGTCCCAGTCGAACTCC 60.126 66.667 0.00 0.00 0.00 3.85
4794 5355 4.712425 CCGAACCCGAACGCGTCT 62.712 66.667 14.44 2.25 38.22 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.588082 CCAACAGAGGCATGGCAAC 59.412 57.895 22.64 14.54 0.00 4.17
13 14 4.100479 CCAACAGAGGCATGGCAA 57.900 55.556 22.64 0.00 0.00 4.52
25 26 1.352622 ACCAACTCCTCTGGCCAACA 61.353 55.000 7.01 0.00 37.48 3.33
26 27 0.890996 CACCAACTCCTCTGGCCAAC 60.891 60.000 7.01 0.00 37.48 3.77
27 28 1.455849 CACCAACTCCTCTGGCCAA 59.544 57.895 7.01 0.00 37.48 4.52
28 29 2.528818 CCACCAACTCCTCTGGCCA 61.529 63.158 4.71 4.71 37.48 5.36
29 30 2.352805 CCACCAACTCCTCTGGCC 59.647 66.667 0.00 0.00 37.48 5.36
30 31 2.352805 CCCACCAACTCCTCTGGC 59.647 66.667 0.00 0.00 37.48 4.85
31 32 3.081554 CCCCACCAACTCCTCTGG 58.918 66.667 0.00 0.00 40.05 3.86
32 33 2.352805 GCCCCACCAACTCCTCTG 59.647 66.667 0.00 0.00 0.00 3.35
33 34 2.121963 TGCCCCACCAACTCCTCT 60.122 61.111 0.00 0.00 0.00 3.69
34 35 2.034221 GTGCCCCACCAACTCCTC 59.966 66.667 0.00 0.00 0.00 3.71
35 36 2.450502 AGTGCCCCACCAACTCCT 60.451 61.111 0.00 0.00 34.49 3.69
36 37 2.282462 CAGTGCCCCACCAACTCC 60.282 66.667 0.00 0.00 34.49 3.85
37 38 1.152756 AACAGTGCCCCACCAACTC 60.153 57.895 0.00 0.00 34.49 3.01
38 39 1.455587 CAACAGTGCCCCACCAACT 60.456 57.895 0.00 0.00 34.49 3.16
39 40 3.128375 CAACAGTGCCCCACCAAC 58.872 61.111 0.00 0.00 34.49 3.77
40 41 2.837291 GCAACAGTGCCCCACCAA 60.837 61.111 0.00 0.00 45.68 3.67
49 50 0.390866 AGATGAGCGAGGCAACAGTG 60.391 55.000 0.00 0.00 41.41 3.66
50 51 0.108424 GAGATGAGCGAGGCAACAGT 60.108 55.000 0.00 0.00 41.41 3.55
51 52 0.175302 AGAGATGAGCGAGGCAACAG 59.825 55.000 0.00 0.00 41.41 3.16
52 53 0.108472 CAGAGATGAGCGAGGCAACA 60.108 55.000 0.00 0.00 41.41 3.33
53 54 0.174389 TCAGAGATGAGCGAGGCAAC 59.826 55.000 0.00 0.00 0.00 4.17
54 55 0.897621 TTCAGAGATGAGCGAGGCAA 59.102 50.000 0.00 0.00 0.00 4.52
55 56 1.117994 ATTCAGAGATGAGCGAGGCA 58.882 50.000 0.00 0.00 0.00 4.75
56 57 1.500108 CATTCAGAGATGAGCGAGGC 58.500 55.000 0.00 0.00 0.00 4.70
57 58 1.685517 TCCATTCAGAGATGAGCGAGG 59.314 52.381 0.00 0.00 0.00 4.63
58 59 2.622470 TCTCCATTCAGAGATGAGCGAG 59.378 50.000 0.00 0.00 37.98 5.03
59 60 2.360483 GTCTCCATTCAGAGATGAGCGA 59.640 50.000 0.00 0.00 44.46 4.93
60 61 2.361757 AGTCTCCATTCAGAGATGAGCG 59.638 50.000 0.00 0.00 44.46 5.03
61 62 3.550639 CGAGTCTCCATTCAGAGATGAGC 60.551 52.174 0.00 0.00 44.46 4.26
62 63 3.631686 ACGAGTCTCCATTCAGAGATGAG 59.368 47.826 0.00 0.00 44.46 2.90
63 64 3.625853 ACGAGTCTCCATTCAGAGATGA 58.374 45.455 0.00 0.00 44.46 2.92
64 65 3.243367 GGACGAGTCTCCATTCAGAGATG 60.243 52.174 3.09 0.00 44.46 2.90
65 66 2.955660 GGACGAGTCTCCATTCAGAGAT 59.044 50.000 3.09 0.00 44.46 2.75
66 67 2.370349 GGACGAGTCTCCATTCAGAGA 58.630 52.381 3.09 0.00 40.62 3.10
67 68 1.407258 GGGACGAGTCTCCATTCAGAG 59.593 57.143 3.09 0.00 35.04 3.35
68 69 1.272480 TGGGACGAGTCTCCATTCAGA 60.272 52.381 0.10 0.00 30.97 3.27
69 70 1.186200 TGGGACGAGTCTCCATTCAG 58.814 55.000 0.10 0.00 30.97 3.02
70 71 1.757118 GATGGGACGAGTCTCCATTCA 59.243 52.381 19.72 5.58 39.27 2.57
71 72 1.269309 CGATGGGACGAGTCTCCATTC 60.269 57.143 19.72 14.28 39.27 2.67
72 73 0.747255 CGATGGGACGAGTCTCCATT 59.253 55.000 19.72 9.64 39.27 3.16
73 74 0.395862 ACGATGGGACGAGTCTCCAT 60.396 55.000 19.17 19.17 40.72 3.41
74 75 0.253894 TACGATGGGACGAGTCTCCA 59.746 55.000 13.20 13.20 35.47 3.86
75 76 0.662085 GTACGATGGGACGAGTCTCC 59.338 60.000 0.10 2.70 37.03 3.71
76 77 0.304098 CGTACGATGGGACGAGTCTC 59.696 60.000 10.44 0.00 41.60 3.36
77 78 0.107993 TCGTACGATGGGACGAGTCT 60.108 55.000 15.28 0.00 42.80 3.24
78 79 2.387309 TCGTACGATGGGACGAGTC 58.613 57.895 15.28 0.00 42.80 3.36
79 80 4.623814 TCGTACGATGGGACGAGT 57.376 55.556 15.28 0.00 42.80 4.18
81 82 1.371337 CTGGTCGTACGATGGGACGA 61.371 60.000 22.57 11.52 45.28 4.20
82 83 1.063649 CTGGTCGTACGATGGGACG 59.936 63.158 22.57 6.07 40.43 4.79
83 84 1.033746 TCCTGGTCGTACGATGGGAC 61.034 60.000 22.57 8.42 0.00 4.46
84 85 0.106369 ATCCTGGTCGTACGATGGGA 60.106 55.000 26.64 26.64 0.00 4.37
85 86 0.032130 CATCCTGGTCGTACGATGGG 59.968 60.000 22.57 21.28 0.00 4.00
86 87 0.032130 CCATCCTGGTCGTACGATGG 59.968 60.000 22.57 21.72 44.23 3.51
87 88 0.032130 CCCATCCTGGTCGTACGATG 59.968 60.000 22.57 13.91 35.17 3.84
88 89 0.106369 TCCCATCCTGGTCGTACGAT 60.106 55.000 22.57 0.29 35.17 3.73
89 90 1.033746 GTCCCATCCTGGTCGTACGA 61.034 60.000 15.28 15.28 35.17 3.43
90 91 1.436336 GTCCCATCCTGGTCGTACG 59.564 63.158 9.53 9.53 35.17 3.67
91 92 1.436336 CGTCCCATCCTGGTCGTAC 59.564 63.158 0.00 0.00 35.17 3.67
92 93 1.755395 CCGTCCCATCCTGGTCGTA 60.755 63.158 0.00 0.00 35.17 3.43
93 94 3.075005 CCGTCCCATCCTGGTCGT 61.075 66.667 0.00 0.00 35.17 4.34
94 95 3.849951 CCCGTCCCATCCTGGTCG 61.850 72.222 0.00 0.00 35.17 4.79
95 96 4.176752 GCCCGTCCCATCCTGGTC 62.177 72.222 0.00 0.00 35.17 4.02
120 121 3.835790 TTTCCTTCACCCGGCCACG 62.836 63.158 2.24 0.00 40.55 4.94
121 122 1.529713 TTTTCCTTCACCCGGCCAC 60.530 57.895 2.24 0.00 0.00 5.01
122 123 1.529713 GTTTTCCTTCACCCGGCCA 60.530 57.895 2.24 0.00 0.00 5.36
123 124 2.622962 CGTTTTCCTTCACCCGGCC 61.623 63.158 0.00 0.00 0.00 6.13
124 125 2.951458 CGTTTTCCTTCACCCGGC 59.049 61.111 0.00 0.00 0.00 6.13
125 126 2.622962 GGCGTTTTCCTTCACCCGG 61.623 63.158 0.00 0.00 0.00 5.73
126 127 2.951458 GGCGTTTTCCTTCACCCG 59.049 61.111 0.00 0.00 0.00 5.28
127 128 2.951458 CGGCGTTTTCCTTCACCC 59.049 61.111 0.00 0.00 0.00 4.61
128 129 2.254350 GCGGCGTTTTCCTTCACC 59.746 61.111 9.37 0.00 0.00 4.02
129 130 1.082104 CTGCGGCGTTTTCCTTCAC 60.082 57.895 9.37 0.00 0.00 3.18
130 131 2.258013 CCTGCGGCGTTTTCCTTCA 61.258 57.895 9.37 0.00 0.00 3.02
131 132 2.561373 CCTGCGGCGTTTTCCTTC 59.439 61.111 9.37 0.00 0.00 3.46
132 133 2.983592 CCCTGCGGCGTTTTCCTT 60.984 61.111 9.37 0.00 0.00 3.36
143 144 4.047059 CAAGCCAACTGCCCTGCG 62.047 66.667 0.00 0.00 42.71 5.18
144 145 2.501602 AACAAGCCAACTGCCCTGC 61.502 57.895 0.00 0.00 42.71 4.85
145 146 1.364901 CAACAAGCCAACTGCCCTG 59.635 57.895 0.00 0.00 42.71 4.45
146 147 1.833934 CCAACAAGCCAACTGCCCT 60.834 57.895 0.00 0.00 42.71 5.19
147 148 2.736531 CCAACAAGCCAACTGCCC 59.263 61.111 0.00 0.00 42.71 5.36
148 149 2.736531 CCCAACAAGCCAACTGCC 59.263 61.111 0.00 0.00 42.71 4.85
149 150 1.398958 TTCCCCAACAAGCCAACTGC 61.399 55.000 0.00 0.00 41.71 4.40
150 151 0.675633 CTTCCCCAACAAGCCAACTG 59.324 55.000 0.00 0.00 0.00 3.16
151 152 1.115326 GCTTCCCCAACAAGCCAACT 61.115 55.000 0.00 0.00 40.45 3.16
152 153 1.367471 GCTTCCCCAACAAGCCAAC 59.633 57.895 0.00 0.00 40.45 3.77
153 154 3.869481 GCTTCCCCAACAAGCCAA 58.131 55.556 0.00 0.00 40.45 4.52
156 157 0.827507 TCAAGGCTTCCCCAACAAGC 60.828 55.000 0.00 0.00 44.79 4.01
157 158 0.961753 GTCAAGGCTTCCCCAACAAG 59.038 55.000 0.00 0.00 35.39 3.16
158 159 0.821711 CGTCAAGGCTTCCCCAACAA 60.822 55.000 0.00 0.00 35.39 2.83
159 160 1.228124 CGTCAAGGCTTCCCCAACA 60.228 57.895 0.00 0.00 35.39 3.33
160 161 1.228154 ACGTCAAGGCTTCCCCAAC 60.228 57.895 0.00 0.00 35.39 3.77
161 162 1.228124 CACGTCAAGGCTTCCCCAA 60.228 57.895 0.00 0.00 35.39 4.12
162 163 2.429930 CACGTCAAGGCTTCCCCA 59.570 61.111 0.00 0.00 35.39 4.96
163 164 3.056328 GCACGTCAAGGCTTCCCC 61.056 66.667 0.00 0.00 0.00 4.81
164 165 3.056328 GGCACGTCAAGGCTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
165 166 2.032681 AGGCACGTCAAGGCTTCC 59.967 61.111 0.00 0.00 38.98 3.46
166 167 2.328099 CCAGGCACGTCAAGGCTTC 61.328 63.158 0.00 0.00 40.22 3.86
167 168 2.281761 CCAGGCACGTCAAGGCTT 60.282 61.111 0.00 0.00 40.22 4.35
168 169 3.120086 AACCAGGCACGTCAAGGCT 62.120 57.895 0.00 0.00 43.32 4.58
169 170 2.594592 AACCAGGCACGTCAAGGC 60.595 61.111 0.00 0.00 0.00 4.35
170 171 1.966451 GGAACCAGGCACGTCAAGG 60.966 63.158 0.00 0.00 0.00 3.61
171 172 2.317609 CGGAACCAGGCACGTCAAG 61.318 63.158 0.00 0.00 0.00 3.02
172 173 2.280524 CGGAACCAGGCACGTCAA 60.281 61.111 0.00 0.00 0.00 3.18
173 174 4.980805 GCGGAACCAGGCACGTCA 62.981 66.667 0.00 0.00 0.00 4.35
210 211 4.660938 AAGACAACAGCCCGGCCC 62.661 66.667 5.55 0.00 0.00 5.80
211 212 3.365265 CAAGACAACAGCCCGGCC 61.365 66.667 5.55 0.00 0.00 6.13
212 213 1.244019 AATCAAGACAACAGCCCGGC 61.244 55.000 0.00 0.00 0.00 6.13
213 214 0.523072 CAATCAAGACAACAGCCCGG 59.477 55.000 0.00 0.00 0.00 5.73
214 215 1.069022 CACAATCAAGACAACAGCCCG 60.069 52.381 0.00 0.00 0.00 6.13
215 216 1.956477 ACACAATCAAGACAACAGCCC 59.044 47.619 0.00 0.00 0.00 5.19
216 217 3.066621 TCAACACAATCAAGACAACAGCC 59.933 43.478 0.00 0.00 0.00 4.85
217 218 4.291540 TCAACACAATCAAGACAACAGC 57.708 40.909 0.00 0.00 0.00 4.40
218 219 6.122850 TCTTCAACACAATCAAGACAACAG 57.877 37.500 0.00 0.00 0.00 3.16
219 220 5.647658 ACTCTTCAACACAATCAAGACAACA 59.352 36.000 0.00 0.00 0.00 3.33
220 221 6.124088 ACTCTTCAACACAATCAAGACAAC 57.876 37.500 0.00 0.00 0.00 3.32
221 222 6.456853 CGAACTCTTCAACACAATCAAGACAA 60.457 38.462 0.00 0.00 0.00 3.18
222 223 5.006649 CGAACTCTTCAACACAATCAAGACA 59.993 40.000 0.00 0.00 0.00 3.41
223 224 5.435557 CGAACTCTTCAACACAATCAAGAC 58.564 41.667 0.00 0.00 0.00 3.01
224 225 4.511454 CCGAACTCTTCAACACAATCAAGA 59.489 41.667 0.00 0.00 0.00 3.02
225 226 4.776743 CCGAACTCTTCAACACAATCAAG 58.223 43.478 0.00 0.00 0.00 3.02
226 227 3.003275 GCCGAACTCTTCAACACAATCAA 59.997 43.478 0.00 0.00 0.00 2.57
227 228 2.548057 GCCGAACTCTTCAACACAATCA 59.452 45.455 0.00 0.00 0.00 2.57
228 229 2.095718 GGCCGAACTCTTCAACACAATC 60.096 50.000 0.00 0.00 0.00 2.67
229 230 1.880027 GGCCGAACTCTTCAACACAAT 59.120 47.619 0.00 0.00 0.00 2.71
230 231 1.305201 GGCCGAACTCTTCAACACAA 58.695 50.000 0.00 0.00 0.00 3.33
231 232 0.878523 CGGCCGAACTCTTCAACACA 60.879 55.000 24.07 0.00 0.00 3.72
232 233 1.566018 CCGGCCGAACTCTTCAACAC 61.566 60.000 30.73 0.00 0.00 3.32
233 234 1.301401 CCGGCCGAACTCTTCAACA 60.301 57.895 30.73 0.00 0.00 3.33
234 235 2.033194 CCCGGCCGAACTCTTCAAC 61.033 63.158 30.73 0.00 0.00 3.18
235 236 2.047213 AACCCGGCCGAACTCTTCAA 62.047 55.000 30.73 0.00 0.00 2.69
236 237 2.513259 AACCCGGCCGAACTCTTCA 61.513 57.895 30.73 0.00 0.00 3.02
237 238 2.033194 CAACCCGGCCGAACTCTTC 61.033 63.158 30.73 0.00 0.00 2.87
238 239 2.032071 CAACCCGGCCGAACTCTT 59.968 61.111 30.73 6.82 0.00 2.85
239 240 2.920912 TCAACCCGGCCGAACTCT 60.921 61.111 30.73 2.58 0.00 3.24
240 241 2.434359 CTCAACCCGGCCGAACTC 60.434 66.667 30.73 0.00 0.00 3.01
241 242 4.016706 CCTCAACCCGGCCGAACT 62.017 66.667 30.73 6.90 0.00 3.01
246 247 4.097361 GAGTCCCTCAACCCGGCC 62.097 72.222 0.00 0.00 0.00 6.13
247 248 4.452733 CGAGTCCCTCAACCCGGC 62.453 72.222 0.00 0.00 0.00 6.13
248 249 3.771160 CCGAGTCCCTCAACCCGG 61.771 72.222 0.00 0.00 0.00 5.73
249 250 4.452733 GCCGAGTCCCTCAACCCG 62.453 72.222 0.00 0.00 0.00 5.28
250 251 4.097361 GGCCGAGTCCCTCAACCC 62.097 72.222 0.00 0.00 0.00 4.11
251 252 2.804828 CTTGGCCGAGTCCCTCAACC 62.805 65.000 12.40 0.00 0.00 3.77
252 253 1.376037 CTTGGCCGAGTCCCTCAAC 60.376 63.158 12.40 0.00 0.00 3.18
253 254 3.068881 CTTGGCCGAGTCCCTCAA 58.931 61.111 12.40 0.00 0.00 3.02
254 255 3.706373 GCTTGGCCGAGTCCCTCA 61.706 66.667 21.55 0.00 0.00 3.86
255 256 4.821589 CGCTTGGCCGAGTCCCTC 62.822 72.222 21.55 3.19 0.00 4.30
258 259 3.876589 TTCACGCTTGGCCGAGTCC 62.877 63.158 21.55 4.70 0.00 3.85
259 260 2.357034 TTCACGCTTGGCCGAGTC 60.357 61.111 21.55 12.43 0.00 3.36
260 261 2.665185 GTTCACGCTTGGCCGAGT 60.665 61.111 21.55 1.05 0.00 4.18
261 262 3.423154 GGTTCACGCTTGGCCGAG 61.423 66.667 16.53 16.53 0.00 4.63
265 266 3.723348 GTCCGGTTCACGCTTGGC 61.723 66.667 0.00 0.00 42.52 4.52
266 267 2.030562 AGTCCGGTTCACGCTTGG 59.969 61.111 0.00 0.00 42.52 3.61
267 268 1.284982 CTCAGTCCGGTTCACGCTTG 61.285 60.000 0.00 0.00 42.52 4.01
268 269 1.006102 CTCAGTCCGGTTCACGCTT 60.006 57.895 0.00 0.00 42.52 4.68
269 270 2.651361 CTCAGTCCGGTTCACGCT 59.349 61.111 0.00 0.00 42.52 5.07
270 271 2.432628 CCTCAGTCCGGTTCACGC 60.433 66.667 0.00 0.00 42.52 5.34
271 272 2.261671 CCCTCAGTCCGGTTCACG 59.738 66.667 0.00 0.00 43.80 4.35
272 273 2.663196 CCCCTCAGTCCGGTTCAC 59.337 66.667 0.00 0.00 0.00 3.18
273 274 3.319198 GCCCCTCAGTCCGGTTCA 61.319 66.667 0.00 0.00 0.00 3.18
274 275 4.452733 CGCCCCTCAGTCCGGTTC 62.453 72.222 0.00 0.00 0.00 3.62
278 279 4.436998 GTGTCGCCCCTCAGTCCG 62.437 72.222 0.00 0.00 0.00 4.79
279 280 2.997897 AGTGTCGCCCCTCAGTCC 60.998 66.667 0.00 0.00 0.00 3.85
280 281 2.262915 CAGTGTCGCCCCTCAGTC 59.737 66.667 0.00 0.00 0.00 3.51
281 282 3.314331 CCAGTGTCGCCCCTCAGT 61.314 66.667 0.00 0.00 0.00 3.41
282 283 4.767255 GCCAGTGTCGCCCCTCAG 62.767 72.222 0.00 0.00 0.00 3.35
290 291 2.028125 ATATGTCGGGGCCAGTGTCG 62.028 60.000 4.39 0.00 0.00 4.35
291 292 1.000955 CTATATGTCGGGGCCAGTGTC 59.999 57.143 4.39 0.00 0.00 3.67
292 293 1.048601 CTATATGTCGGGGCCAGTGT 58.951 55.000 4.39 0.00 0.00 3.55
293 294 1.000955 GACTATATGTCGGGGCCAGTG 59.999 57.143 4.39 0.00 35.81 3.66
294 295 1.339097 GACTATATGTCGGGGCCAGT 58.661 55.000 4.39 0.00 35.81 4.00
325 326 8.584157 TGGTCTTTTCAAATGTTATGTGCTTAT 58.416 29.630 0.00 0.00 0.00 1.73
326 327 7.946207 TGGTCTTTTCAAATGTTATGTGCTTA 58.054 30.769 0.00 0.00 0.00 3.09
327 328 6.815089 TGGTCTTTTCAAATGTTATGTGCTT 58.185 32.000 0.00 0.00 0.00 3.91
328 329 6.403866 TGGTCTTTTCAAATGTTATGTGCT 57.596 33.333 0.00 0.00 0.00 4.40
329 330 6.146021 CCTTGGTCTTTTCAAATGTTATGTGC 59.854 38.462 0.00 0.00 0.00 4.57
330 331 7.209475 ACCTTGGTCTTTTCAAATGTTATGTG 58.791 34.615 0.00 0.00 0.00 3.21
331 332 7.360113 ACCTTGGTCTTTTCAAATGTTATGT 57.640 32.000 0.00 0.00 0.00 2.29
332 333 7.384932 GGAACCTTGGTCTTTTCAAATGTTATG 59.615 37.037 0.00 0.00 0.00 1.90
333 334 7.070571 TGGAACCTTGGTCTTTTCAAATGTTAT 59.929 33.333 0.00 0.00 0.00 1.89
334 335 6.381420 TGGAACCTTGGTCTTTTCAAATGTTA 59.619 34.615 0.00 0.00 0.00 2.41
335 336 5.188751 TGGAACCTTGGTCTTTTCAAATGTT 59.811 36.000 0.00 0.00 0.00 2.71
336 337 4.714308 TGGAACCTTGGTCTTTTCAAATGT 59.286 37.500 0.00 0.00 0.00 2.71
337 338 5.275067 TGGAACCTTGGTCTTTTCAAATG 57.725 39.130 0.00 0.00 0.00 2.32
338 339 6.290605 CAATGGAACCTTGGTCTTTTCAAAT 58.709 36.000 0.00 0.00 0.00 2.32
339 340 5.669477 CAATGGAACCTTGGTCTTTTCAAA 58.331 37.500 0.00 0.00 0.00 2.69
340 341 4.442753 GCAATGGAACCTTGGTCTTTTCAA 60.443 41.667 0.00 0.00 0.00 2.69
341 342 3.069443 GCAATGGAACCTTGGTCTTTTCA 59.931 43.478 0.00 0.00 0.00 2.69
342 343 3.069443 TGCAATGGAACCTTGGTCTTTTC 59.931 43.478 0.00 0.00 0.00 2.29
343 344 3.037549 TGCAATGGAACCTTGGTCTTTT 58.962 40.909 0.00 0.00 0.00 2.27
344 345 2.676748 TGCAATGGAACCTTGGTCTTT 58.323 42.857 0.00 0.00 0.00 2.52
345 346 2.380064 TGCAATGGAACCTTGGTCTT 57.620 45.000 0.00 0.00 0.00 3.01
346 347 2.173519 CATGCAATGGAACCTTGGTCT 58.826 47.619 0.00 0.00 41.79 3.85
347 348 1.404583 GCATGCAATGGAACCTTGGTC 60.405 52.381 14.21 0.00 46.86 4.02
348 349 0.609662 GCATGCAATGGAACCTTGGT 59.390 50.000 14.21 0.00 46.86 3.67
349 350 0.108041 GGCATGCAATGGAACCTTGG 60.108 55.000 21.36 0.00 46.86 3.61
350 351 0.899720 AGGCATGCAATGGAACCTTG 59.100 50.000 21.36 0.00 46.86 3.61
351 352 0.899720 CAGGCATGCAATGGAACCTT 59.100 50.000 21.36 0.00 46.86 3.50
352 353 0.974010 CCAGGCATGCAATGGAACCT 60.974 55.000 28.46 8.91 46.86 3.50
353 354 1.518774 CCAGGCATGCAATGGAACC 59.481 57.895 28.46 6.76 46.86 3.62
354 355 1.259840 ACCCAGGCATGCAATGGAAC 61.260 55.000 32.03 10.66 46.86 3.62
355 356 0.544833 AACCCAGGCATGCAATGGAA 60.545 50.000 32.03 0.00 46.86 3.53
356 357 0.971959 GAACCCAGGCATGCAATGGA 60.972 55.000 32.03 0.00 46.86 3.41
357 358 1.259142 TGAACCCAGGCATGCAATGG 61.259 55.000 26.48 26.48 46.86 3.16
359 360 1.117150 GATGAACCCAGGCATGCAAT 58.883 50.000 21.36 4.13 0.00 3.56
360 361 0.040058 AGATGAACCCAGGCATGCAA 59.960 50.000 21.36 0.00 0.00 4.08
361 362 0.394762 GAGATGAACCCAGGCATGCA 60.395 55.000 21.36 0.00 0.00 3.96
362 363 1.105759 GGAGATGAACCCAGGCATGC 61.106 60.000 9.90 9.90 0.00 4.06
363 364 0.466922 GGGAGATGAACCCAGGCATG 60.467 60.000 0.00 0.00 46.05 4.06
364 365 1.925888 GGGAGATGAACCCAGGCAT 59.074 57.895 0.00 0.00 46.05 4.40
365 366 3.415186 GGGAGATGAACCCAGGCA 58.585 61.111 0.00 0.00 46.05 4.75
370 371 1.420430 TATGTCGGGGAGATGAACCC 58.580 55.000 0.00 0.00 46.05 4.11
371 372 3.833070 ACTATATGTCGGGGAGATGAACC 59.167 47.826 0.00 0.00 0.00 3.62
372 373 5.061920 GACTATATGTCGGGGAGATGAAC 57.938 47.826 0.00 0.00 35.81 3.18
451 454 7.068103 TGGCTTTTTGTGTTCTTCTGATCTTAA 59.932 33.333 0.00 0.00 0.00 1.85
463 466 5.989551 AATTGTCATGGCTTTTTGTGTTC 57.010 34.783 0.00 0.00 0.00 3.18
468 471 8.610896 TGTTTCTTTAATTGTCATGGCTTTTTG 58.389 29.630 0.00 0.00 0.00 2.44
474 477 9.241317 CATATCTGTTTCTTTAATTGTCATGGC 57.759 33.333 0.00 0.00 0.00 4.40
484 487 8.623903 GGTGATGCATCATATCTGTTTCTTTAA 58.376 33.333 30.89 0.00 39.30 1.52
489 492 6.183360 TGTTGGTGATGCATCATATCTGTTTC 60.183 38.462 30.89 14.98 39.30 2.78
645 650 9.529325 TTCCTGTTCATTTGTTATACTATCTCG 57.471 33.333 0.00 0.00 0.00 4.04
673 678 5.220854 GGCTACAATTTCACATGCTAACGAT 60.221 40.000 0.00 0.00 0.00 3.73
699 705 6.573664 TTTACAACCATTGATGTCCTTCAG 57.426 37.500 0.00 0.00 0.00 3.02
781 1144 2.629051 ACCGTAAGCAACTAAGCATCC 58.371 47.619 0.00 0.00 36.85 3.51
785 1148 6.313164 AGAGATTTTACCGTAAGCAACTAAGC 59.687 38.462 0.00 0.00 0.00 3.09
786 1149 7.760340 AGAGAGATTTTACCGTAAGCAACTAAG 59.240 37.037 0.00 0.00 0.00 2.18
787 1150 7.609056 AGAGAGATTTTACCGTAAGCAACTAA 58.391 34.615 0.00 0.00 0.00 2.24
788 1151 7.166691 AGAGAGATTTTACCGTAAGCAACTA 57.833 36.000 0.00 0.00 0.00 2.24
789 1152 6.038997 AGAGAGATTTTACCGTAAGCAACT 57.961 37.500 0.00 0.00 0.00 3.16
790 1153 6.723131 AAGAGAGATTTTACCGTAAGCAAC 57.277 37.500 0.00 0.00 0.00 4.17
791 1154 6.148811 CCAAAGAGAGATTTTACCGTAAGCAA 59.851 38.462 0.00 0.00 0.00 3.91
792 1155 5.642063 CCAAAGAGAGATTTTACCGTAAGCA 59.358 40.000 0.00 0.00 0.00 3.91
904 1267 6.488683 CACGTGTAATAAATGGTGGGGATATT 59.511 38.462 7.58 0.00 0.00 1.28
906 1269 5.369833 CACGTGTAATAAATGGTGGGGATA 58.630 41.667 7.58 0.00 0.00 2.59
916 1286 2.420722 CCCGTTGGCACGTGTAATAAAT 59.579 45.455 18.38 0.00 45.62 1.40
1304 1674 1.954146 GAGCGCACGACAAAGACCA 60.954 57.895 11.47 0.00 0.00 4.02
1318 1688 1.942657 CAATGATTGGTACAGGGAGCG 59.057 52.381 0.00 0.00 42.39 5.03
1441 1824 6.778069 AGATTACTCTAACATCCGGATCAGAA 59.222 38.462 15.88 3.54 0.00 3.02
1523 1907 3.395639 TGTACAAGCTTCGGTACCAAAG 58.604 45.455 19.09 10.85 39.23 2.77
1558 1945 3.075882 TCCCAGAATTGACATCTTTGGGT 59.924 43.478 12.63 0.00 33.74 4.51
1570 1958 3.967332 ACCAAAGCAATCCCAGAATTG 57.033 42.857 0.00 0.00 39.22 2.32
1602 1990 5.352569 CCCTTTGTACATGAGCTTCAGTAAG 59.647 44.000 0.00 0.00 35.68 2.34
1603 1991 5.245531 CCCTTTGTACATGAGCTTCAGTAA 58.754 41.667 0.00 0.00 0.00 2.24
1606 1994 3.012518 CCCCTTTGTACATGAGCTTCAG 58.987 50.000 0.00 0.00 0.00 3.02
1609 1997 1.710809 ACCCCCTTTGTACATGAGCTT 59.289 47.619 0.00 0.00 0.00 3.74
1628 2016 7.809665 TCGGGCTAAAAGATTTACAGTTTTAC 58.190 34.615 0.00 0.00 0.00 2.01
1634 2022 7.312899 ACAAAATCGGGCTAAAAGATTTACAG 58.687 34.615 3.53 1.24 41.89 2.74
1696 2087 4.310769 CCCGCATCCACAAAATGTAAAAA 58.689 39.130 0.00 0.00 0.00 1.94
1697 2088 3.862642 GCCCGCATCCACAAAATGTAAAA 60.863 43.478 0.00 0.00 0.00 1.52
1716 2107 1.588082 CAGCACAATGTTCCAGCCC 59.412 57.895 0.00 0.00 0.00 5.19
1751 2142 9.440773 CTATGTGTACCAGCATCAAATATACAT 57.559 33.333 0.00 0.00 33.72 2.29
1754 2145 8.646900 TCACTATGTGTACCAGCATCAAATATA 58.353 33.333 0.00 0.00 34.79 0.86
1764 2155 3.926616 ACAGTTCACTATGTGTACCAGC 58.073 45.455 4.32 0.00 35.04 4.85
1771 2162 6.638063 CCACAAATTTGACAGTTCACTATGTG 59.362 38.462 24.64 7.57 34.81 3.21
1772 2163 6.735694 GCCACAAATTTGACAGTTCACTATGT 60.736 38.462 24.64 0.00 0.00 2.29
1843 2284 6.018507 GCAATTCATTTCATTTAGCATCCACC 60.019 38.462 0.00 0.00 0.00 4.61
1885 2326 0.457035 TTATCGCCACACTACCGTCC 59.543 55.000 0.00 0.00 0.00 4.79
1886 2327 2.282701 TTTATCGCCACACTACCGTC 57.717 50.000 0.00 0.00 0.00 4.79
1933 2375 8.358895 TGCACATAATATTACCAAATCACATGG 58.641 33.333 0.00 0.00 43.84 3.66
1954 2403 4.679373 ACCAACCAAAACATATTGCACA 57.321 36.364 0.00 0.00 0.00 4.57
1955 2404 6.480320 TGTTTACCAACCAAAACATATTGCAC 59.520 34.615 0.00 0.00 39.88 4.57
1960 2409 8.865090 TCAGATTGTTTACCAACCAAAACATAT 58.135 29.630 1.88 0.32 43.14 1.78
1994 2443 4.439253 AAACCTCAAGCCTAAGTGAGTT 57.561 40.909 0.00 0.00 39.76 3.01
2020 2469 0.254178 AGTGGCCTGGTGCAGATTAG 59.746 55.000 3.32 0.00 43.89 1.73
2037 2487 4.466827 CAAAACAACCTAAGTACCCCAGT 58.533 43.478 0.00 0.00 0.00 4.00
2042 2492 6.709397 AGAGTAAGCAAAACAACCTAAGTACC 59.291 38.462 0.00 0.00 0.00 3.34
2049 2499 6.524101 TTGAAAGAGTAAGCAAAACAACCT 57.476 33.333 0.00 0.00 0.00 3.50
2071 2521 5.581085 GCGATACACCACTAGTTCAGAAATT 59.419 40.000 0.00 0.00 0.00 1.82
2076 2526 3.784701 AGCGATACACCACTAGTTCAG 57.215 47.619 0.00 0.00 0.00 3.02
2099 2557 6.371809 AACAAACTGCGAGTTGAAAGATTA 57.628 33.333 2.88 0.00 38.66 1.75
2112 2570 6.551736 AGTGGCTTATTATAAACAAACTGCG 58.448 36.000 0.00 0.00 0.00 5.18
2132 2590 4.672587 TTAGGAGCAGCAGTAATAGTGG 57.327 45.455 0.00 0.00 0.00 4.00
2133 2591 5.525378 CCTTTTAGGAGCAGCAGTAATAGTG 59.475 44.000 0.00 0.00 37.67 2.74
2134 2592 5.675538 CCTTTTAGGAGCAGCAGTAATAGT 58.324 41.667 0.00 0.00 37.67 2.12
2166 2658 7.375053 ACGCCATATTAAACTCACAAAAATGT 58.625 30.769 0.00 0.00 0.00 2.71
2200 2700 7.419172 CGAGGAAAGGGGAATCTAAACTAATCT 60.419 40.741 0.00 0.00 0.00 2.40
2299 2803 8.537728 TGCTACATCCCAAGAATTTTATTCAT 57.462 30.769 2.60 0.00 0.00 2.57
2326 2830 5.221185 GCGACCAACTGATAAGGATGTACTA 60.221 44.000 0.00 0.00 0.00 1.82
2327 2831 4.441634 GCGACCAACTGATAAGGATGTACT 60.442 45.833 0.00 0.00 0.00 2.73
2332 2836 3.452627 AGAAGCGACCAACTGATAAGGAT 59.547 43.478 0.00 0.00 0.00 3.24
2334 2838 3.118956 AGAGAAGCGACCAACTGATAAGG 60.119 47.826 0.00 0.00 0.00 2.69
2335 2839 4.116747 AGAGAAGCGACCAACTGATAAG 57.883 45.455 0.00 0.00 0.00 1.73
2339 2851 3.258372 ACATAAGAGAAGCGACCAACTGA 59.742 43.478 0.00 0.00 0.00 3.41
2347 2859 6.452494 AGCTACTAAACATAAGAGAAGCGA 57.548 37.500 0.00 0.00 0.00 4.93
2349 2861 7.835634 ACAAGCTACTAAACATAAGAGAAGC 57.164 36.000 0.00 0.00 0.00 3.86
2359 2871 9.204570 GAACTCAGATAAACAAGCTACTAAACA 57.795 33.333 0.00 0.00 0.00 2.83
2511 3023 0.107703 GAACATGGATCACCGCTCCA 60.108 55.000 0.00 0.00 46.45 3.86
2586 3098 5.224135 GCCCGATCAGAAACTAGTATTCTC 58.776 45.833 13.88 2.89 34.99 2.87
2595 3107 0.625849 AATGGGCCCGATCAGAAACT 59.374 50.000 19.37 0.00 0.00 2.66
2598 3110 1.037030 GCAAATGGGCCCGATCAGAA 61.037 55.000 19.37 0.00 0.00 3.02
2604 3116 1.076549 AAAGAGCAAATGGGCCCGA 59.923 52.632 19.37 6.86 0.00 5.14
2610 3122 6.541278 TCTGATGTAGATCAAAGAGCAAATGG 59.459 38.462 3.90 0.00 38.17 3.16
2628 3140 5.596361 CCTAAGTCCATCTACAGTCTGATGT 59.404 44.000 6.91 0.00 38.59 3.06
2658 3170 5.571784 CTATGAAGGAATTTGCAAGCTCA 57.428 39.130 0.00 0.00 0.00 4.26
2864 3376 2.772287 GCTCTGCAAACCTCTTGTACT 58.228 47.619 0.00 0.00 0.00 2.73
2980 3492 7.172532 CGGATAAGTTCCAAAATCGATATCCAA 59.827 37.037 13.94 0.00 45.78 3.53
3006 3518 4.009370 AGGGCTAGAAGAAGTCACAAAC 57.991 45.455 0.00 0.00 0.00 2.93
3063 3575 1.125633 GGTCGCCAATAACCCTAGGA 58.874 55.000 11.48 0.00 0.00 2.94
3137 3649 9.502091 TGTAAAATAGTGAGTTAGACAAGCAAT 57.498 29.630 0.00 0.00 0.00 3.56
3138 3650 8.896320 TGTAAAATAGTGAGTTAGACAAGCAA 57.104 30.769 0.00 0.00 0.00 3.91
3210 3722 5.017490 CCTTCCTCTCCAAGTAGTTCAGTA 58.983 45.833 0.00 0.00 0.00 2.74
3388 3900 3.942130 AACACCCAGCTTAATTTCTGC 57.058 42.857 0.00 0.00 0.00 4.26
3418 3930 7.340487 GGATTGTAGTTTCTCTCCATCCATTTT 59.660 37.037 0.00 0.00 31.59 1.82
3509 4021 6.166279 CAAAGGTACTGCTCAGAGATGTAAA 58.834 40.000 0.00 0.00 40.86 2.01
3510 4022 5.724328 CAAAGGTACTGCTCAGAGATGTAA 58.276 41.667 0.00 0.00 40.86 2.41
3516 4028 2.462456 TGCAAAGGTACTGCTCAGAG 57.538 50.000 3.60 0.00 40.86 3.35
3544 4056 5.888105 ACAGTTCTGAAATGCAGCATAATC 58.112 37.500 16.84 10.94 44.52 1.75
3561 4073 3.203716 ACCGGAGAAAGAACAACAGTTC 58.796 45.455 9.46 0.28 41.50 3.01
3579 4091 5.255596 CAACTAAATCGCATCTTACAACCG 58.744 41.667 0.00 0.00 0.00 4.44
3609 4121 6.874134 ACAATACTACAGAACTAAAGCCAGTG 59.126 38.462 0.00 0.00 0.00 3.66
3627 4139 9.383519 CTGGTAATGACATCAGTTTACAATACT 57.616 33.333 7.38 0.00 0.00 2.12
3661 4173 9.048446 TCCTCACATTTAAGTGTAAGTTGTTAC 57.952 33.333 2.99 0.00 40.37 2.50
3696 4208 5.527951 AGACGAAGCATATGAGAGATGAAC 58.472 41.667 6.97 0.00 0.00 3.18
3840 4352 1.796017 TGTAGTGGACTGGAACACCA 58.204 50.000 0.00 0.00 38.34 4.17
3870 4382 1.692042 CAGAGCATCCCTCCCAGGT 60.692 63.158 0.00 0.00 41.74 4.00
3901 4413 2.156098 GTACCAAATCGAGTTTGCCCA 58.844 47.619 0.00 0.00 44.69 5.36
3936 4448 7.208080 TCGGCCTAGTTAAGACTGAATTATTC 58.792 38.462 0.00 0.00 36.60 1.75
3979 4491 0.895100 TGGCAATCAAGGGTGTGCTC 60.895 55.000 0.00 0.00 37.17 4.26
4082 4594 7.108194 ACACTGCATCCTTATGGTGATATATG 58.892 38.462 5.57 0.00 32.61 1.78
4149 4661 3.972950 TTGTGACAATACCACCAAACG 57.027 42.857 0.00 0.00 33.80 3.60
4186 4699 4.319984 GCATTCAGCATTCATAATCAGCGA 60.320 41.667 0.00 0.00 44.79 4.93
4244 4757 3.128068 CCCCCAACTAGCGAAATAAACAC 59.872 47.826 0.00 0.00 0.00 3.32
4245 4758 3.244981 ACCCCCAACTAGCGAAATAAACA 60.245 43.478 0.00 0.00 0.00 2.83
4258 4771 1.351350 GAGCTAAAGACACCCCCAACT 59.649 52.381 0.00 0.00 0.00 3.16
4318 4831 5.756195 TCACTCACTGTCAAAGGATTTTG 57.244 39.130 0.00 0.00 44.03 2.44
4442 4958 1.775039 TTGGCGCGCATGAGCTAATC 61.775 55.000 34.42 11.73 41.13 1.75
4444 4960 2.435762 TTGGCGCGCATGAGCTAA 60.436 55.556 34.42 12.29 41.13 3.09
4524 5040 5.241662 AGCTTCCAAGTTCTTCATGTAGTC 58.758 41.667 0.00 0.00 0.00 2.59
4539 5055 4.532126 TCTGATGAGAGGTTTAGCTTCCAA 59.468 41.667 0.00 0.00 0.00 3.53
4555 5071 4.891756 TCTACATGCAGTCTGATCTGATGA 59.108 41.667 3.32 0.00 37.61 2.92
4556 5072 5.197682 TCTACATGCAGTCTGATCTGATG 57.802 43.478 3.32 6.62 37.61 3.07
4558 5074 4.023365 CGATCTACATGCAGTCTGATCTGA 60.023 45.833 3.32 0.00 37.79 3.27
4559 5075 4.228317 CGATCTACATGCAGTCTGATCTG 58.772 47.826 3.32 0.00 37.79 2.90
4560 5076 3.255395 CCGATCTACATGCAGTCTGATCT 59.745 47.826 3.32 0.00 37.79 2.75
4561 5077 3.254411 TCCGATCTACATGCAGTCTGATC 59.746 47.826 3.32 10.58 37.17 2.92
4565 5081 3.027412 ACTTCCGATCTACATGCAGTCT 58.973 45.455 0.00 0.00 0.00 3.24
4566 5082 3.067461 AGACTTCCGATCTACATGCAGTC 59.933 47.826 0.00 0.00 0.00 3.51
4567 5083 3.027412 AGACTTCCGATCTACATGCAGT 58.973 45.455 0.00 0.00 0.00 4.40
4569 5085 5.359860 TCTTAAGACTTCCGATCTACATGCA 59.640 40.000 0.00 0.00 0.00 3.96
4573 5089 9.350951 TCATATTCTTAAGACTTCCGATCTACA 57.649 33.333 4.18 0.00 0.00 2.74
4574 5090 9.615295 GTCATATTCTTAAGACTTCCGATCTAC 57.385 37.037 4.18 0.00 0.00 2.59
4575 5091 9.350951 TGTCATATTCTTAAGACTTCCGATCTA 57.649 33.333 4.18 0.00 29.47 1.98
4576 5092 8.239038 TGTCATATTCTTAAGACTTCCGATCT 57.761 34.615 4.18 0.00 29.47 2.75
4577 5093 9.134734 GATGTCATATTCTTAAGACTTCCGATC 57.865 37.037 4.18 0.00 30.18 3.69
4579 5095 8.007405 TGATGTCATATTCTTAAGACTTCCGA 57.993 34.615 4.18 0.00 33.03 4.55
4580 5096 8.138074 TCTGATGTCATATTCTTAAGACTTCCG 58.862 37.037 4.18 0.00 33.03 4.30
4581 5097 9.995003 ATCTGATGTCATATTCTTAAGACTTCC 57.005 33.333 4.18 0.00 33.03 3.46
4816 5377 2.125552 CAAGCATCAGGGCGTCGA 60.126 61.111 0.00 0.00 39.27 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.