Multiple sequence alignment - TraesCS4B01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G289600 chr4B 100.000 6761 0 0 1 6761 574441287 574448047 0.000000e+00 12486.0
1 TraesCS4B01G289600 chr4B 90.196 51 2 1 6557 6604 614780337 614780287 5.660000e-06 63.9
2 TraesCS4B01G289600 chr4A 94.937 5175 151 51 919 6046 8597931 8592821 0.000000e+00 8002.0
3 TraesCS4B01G289600 chr4A 86.068 646 57 13 1 615 8598865 8598222 0.000000e+00 664.0
4 TraesCS4B01G289600 chr4A 88.293 205 23 1 6143 6347 8592414 8592211 1.880000e-60 244.0
5 TraesCS4B01G289600 chr4A 88.770 187 12 3 613 790 8598158 8597972 3.170000e-53 220.0
6 TraesCS4B01G289600 chr4A 94.521 73 4 0 6052 6124 8592781 8592709 5.540000e-21 113.0
7 TraesCS4B01G289600 chr4A 93.056 72 5 0 6690 6761 695794219 695794148 9.270000e-19 106.0
8 TraesCS4B01G289600 chr4A 82.243 107 15 4 6657 6761 131996927 131996823 9.340000e-14 89.8
9 TraesCS4B01G289600 chr4A 100.000 31 0 0 6563 6593 691809653 691809623 2.630000e-04 58.4
10 TraesCS4B01G289600 chr4D 96.933 4206 85 22 1848 6046 459555043 459559211 0.000000e+00 7012.0
11 TraesCS4B01G289600 chr4D 91.749 812 32 13 919 1709 459554249 459555046 0.000000e+00 1096.0
12 TraesCS4B01G289600 chr4D 85.895 553 47 13 1 523 459553696 459554247 1.650000e-155 560.0
13 TraesCS4B01G289600 chr4D 90.210 286 12 7 6052 6329 459559251 459559528 6.450000e-95 359.0
14 TraesCS4B01G289600 chr4D 90.148 203 14 5 6339 6537 102872966 102872766 6.730000e-65 259.0
15 TraesCS4B01G289600 chr3D 91.388 209 13 4 6332 6537 608616072 608615866 1.440000e-71 281.0
16 TraesCS4B01G289600 chr3D 91.220 205 14 3 6336 6537 507759528 507759325 6.680000e-70 276.0
17 TraesCS4B01G289600 chr3D 90.244 205 16 3 6336 6537 570303334 570303131 1.450000e-66 265.0
18 TraesCS4B01G289600 chr3D 92.398 171 10 3 5302 5469 87925991 87926161 2.440000e-59 241.0
19 TraesCS4B01G289600 chr5D 91.304 207 14 3 6334 6537 505020387 505020182 5.160000e-71 279.0
20 TraesCS4B01G289600 chr5D 91.089 202 14 3 6339 6537 559666681 559666481 3.110000e-68 270.0
21 TraesCS4B01G289600 chr5D 92.638 163 11 1 5309 5470 150835568 150835730 4.080000e-57 233.0
22 TraesCS4B01G289600 chr1A 89.952 209 17 3 6332 6537 543937054 543937261 4.020000e-67 267.0
23 TraesCS4B01G289600 chr1A 92.638 163 11 1 5309 5470 540323906 540324068 4.080000e-57 233.0
24 TraesCS4B01G289600 chr3A 89.855 207 17 3 6334 6537 16950470 16950265 5.200000e-66 263.0
25 TraesCS4B01G289600 chr3A 91.765 170 12 2 5309 5476 585298142 585297973 1.130000e-57 235.0
26 TraesCS4B01G289600 chr6D 89.904 208 14 6 6334 6537 351122904 351122700 1.870000e-65 261.0
27 TraesCS4B01G289600 chr6D 92.638 163 11 1 5309 5470 90112399 90112237 4.080000e-57 233.0
28 TraesCS4B01G289600 chr6D 93.056 72 4 1 6690 6761 312192369 312192299 3.340000e-18 104.0
29 TraesCS4B01G289600 chr2D 92.638 163 10 2 5308 5469 296364210 296364049 4.080000e-57 233.0
30 TraesCS4B01G289600 chr2D 81.746 126 19 4 6618 6742 631546417 631546539 1.200000e-17 102.0
31 TraesCS4B01G289600 chr2D 87.879 66 5 1 6557 6619 115581015 115581080 2.620000e-09 75.0
32 TraesCS4B01G289600 chr6B 90.000 180 16 2 5296 5473 16269654 16269833 1.470000e-56 231.0
33 TraesCS4B01G289600 chr3B 78.750 320 31 8 6334 6619 755807794 755808110 5.390000e-41 180.0
34 TraesCS4B01G289600 chr3B 86.525 141 14 3 6621 6761 41562519 41562384 4.220000e-32 150.0
35 TraesCS4B01G289600 chr3B 92.593 81 6 0 6609 6689 188488111 188488031 4.280000e-22 117.0
36 TraesCS4B01G289600 chr3B 81.250 160 12 8 6620 6761 19741699 19741540 5.540000e-21 113.0
37 TraesCS4B01G289600 chr1B 86.525 141 13 6 6622 6761 181144655 181144790 4.220000e-32 150.0
38 TraesCS4B01G289600 chrUn 85.915 142 16 3 6620 6761 7639623 7639486 1.520000e-31 148.0
39 TraesCS4B01G289600 chr5B 95.714 70 3 0 6620 6689 429430403 429430472 5.540000e-21 113.0
40 TraesCS4B01G289600 chr5B 95.714 70 3 0 6620 6689 545201013 545200944 5.540000e-21 113.0
41 TraesCS4B01G289600 chr2B 81.481 162 8 5 6620 6759 17895049 17894888 5.540000e-21 113.0
42 TraesCS4B01G289600 chr7B 94.444 72 3 1 6690 6761 526860420 526860490 7.170000e-20 110.0
43 TraesCS4B01G289600 chr5A 86.813 91 8 3 6673 6761 534742579 534742491 1.550000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G289600 chr4B 574441287 574448047 6760 False 12486.00 12486 100.00000 1 6761 1 chr4B.!!$F1 6760
1 TraesCS4B01G289600 chr4A 8592211 8598865 6654 True 1848.60 8002 90.51780 1 6347 5 chr4A.!!$R4 6346
2 TraesCS4B01G289600 chr4D 459553696 459559528 5832 False 2256.75 7012 91.19675 1 6329 4 chr4D.!!$F1 6328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 422 0.179156 CATGCAACAACCTCGATGGC 60.179 55.000 0.00 0.00 40.22 4.40 F
1002 1112 0.179215 GACGTGAAAAGCAGGCGATG 60.179 55.000 0.00 0.00 35.84 3.84 F
1332 1460 0.034616 GACTCTGGCTGTGCTGAAGT 59.965 55.000 0.00 0.00 0.00 3.01 F
1448 1577 0.893727 GCCGGTGTTCTGGAATTGGT 60.894 55.000 1.90 0.00 42.46 3.67 F
1826 1959 1.367659 GTTTGTTTGCAGCAAGCCAA 58.632 45.000 18.33 16.43 44.83 4.52 F
3371 3507 1.421877 CGTGTGTGCGTGTGTTTGA 59.578 52.632 0.00 0.00 0.00 2.69 F
4425 4565 1.838396 CCCCAACAGGCAAGGCTTT 60.838 57.895 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1373 0.385751 CGACATAGCTCGTGGGATGT 59.614 55.000 0.00 0.00 35.26 3.06 R
1806 1939 0.805322 TGGCTTGCTGCAAACAAACG 60.805 50.000 16.74 4.67 45.15 3.60 R
3119 3253 1.153939 CAGCTCCTCTTCCGTCACG 60.154 63.158 0.00 0.00 0.00 4.35 R
3353 3489 0.027455 ATCAAACACACGCACACACG 59.973 50.000 0.00 0.00 39.50 4.49 R
3701 3837 7.677454 ATAGGCATATACACACATGACAATG 57.323 36.000 0.00 0.00 39.89 2.82 R
4909 5049 3.421919 TCCACAGAGCATGAAACATGA 57.578 42.857 14.65 0.00 0.00 3.07 R
6350 6835 0.030235 GTGTTCTTGGGGTTGCGAAC 59.970 55.000 0.00 0.00 37.02 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 72 1.203001 TCCTAAACCCCTTGCAACAGG 60.203 52.381 8.21 8.21 0.00 4.00
109 113 5.749109 CCCTAGAAACTATTCACGCTACAAG 59.251 44.000 0.00 0.00 38.06 3.16
148 152 2.024176 ACACTATGTGAATGCCGACC 57.976 50.000 4.61 0.00 36.96 4.79
168 172 7.621219 GCCGACCAAAAACTTTTAATTGCATAG 60.621 37.037 0.00 0.00 0.00 2.23
178 182 7.716612 ACTTTTAATTGCATAGCACCTTATCC 58.283 34.615 0.00 0.00 38.71 2.59
179 183 6.648879 TTTAATTGCATAGCACCTTATCCC 57.351 37.500 0.00 0.00 38.71 3.85
182 186 1.202806 TGCATAGCACCTTATCCCTGC 60.203 52.381 0.00 0.00 31.71 4.85
228 232 0.391228 AAATCCAACCGCACCCAAAC 59.609 50.000 0.00 0.00 0.00 2.93
246 252 5.365619 CCAAACATCCTAGTAAAGGCGTAT 58.634 41.667 0.00 0.00 46.10 3.06
249 255 7.170998 CCAAACATCCTAGTAAAGGCGTATTAG 59.829 40.741 0.00 0.00 46.10 1.73
278 284 4.688021 TGTGGTCAAGTAAAAACAATGCC 58.312 39.130 0.00 0.00 0.00 4.40
280 286 3.243569 TGGTCAAGTAAAAACAATGCCGG 60.244 43.478 0.00 0.00 0.00 6.13
282 288 2.362397 TCAAGTAAAAACAATGCCGGCA 59.638 40.909 34.80 34.80 0.00 5.69
347 367 1.607148 CAAAGGTCGGGACTGGTTTTC 59.393 52.381 0.00 0.00 0.00 2.29
349 369 0.396811 AGGTCGGGACTGGTTTTCTG 59.603 55.000 0.00 0.00 0.00 3.02
351 371 1.072505 TCGGGACTGGTTTTCTGCC 59.927 57.895 0.00 0.00 0.00 4.85
352 372 2.325082 CGGGACTGGTTTTCTGCCG 61.325 63.158 0.00 0.00 0.00 5.69
353 373 1.971695 GGGACTGGTTTTCTGCCGG 60.972 63.158 0.00 0.00 38.32 6.13
354 374 1.072505 GGACTGGTTTTCTGCCGGA 59.927 57.895 5.05 0.00 36.29 5.14
355 375 0.322546 GGACTGGTTTTCTGCCGGAT 60.323 55.000 5.05 0.00 36.29 4.18
396 418 0.249699 ACGTCATGCAACAACCTCGA 60.250 50.000 0.00 0.00 0.00 4.04
397 419 1.078709 CGTCATGCAACAACCTCGAT 58.921 50.000 0.00 0.00 0.00 3.59
400 422 0.179156 CATGCAACAACCTCGATGGC 60.179 55.000 0.00 0.00 40.22 4.40
437 459 2.671070 CACCTGAATCTGCCCCGT 59.329 61.111 0.00 0.00 0.00 5.28
449 471 1.360192 GCCCCGTGCATAATGCTTC 59.640 57.895 0.00 0.00 45.31 3.86
471 493 4.618489 TCGATCATCGACATTGATCATTCG 59.382 41.667 21.40 12.63 44.82 3.34
472 494 4.635982 GATCATCGACATTGATCATTCGC 58.364 43.478 18.33 0.00 45.71 4.70
473 495 2.802247 TCATCGACATTGATCATTCGCC 59.198 45.455 14.08 0.00 0.00 5.54
475 497 2.473816 TCGACATTGATCATTCGCCTC 58.526 47.619 14.08 0.00 0.00 4.70
477 499 1.876156 GACATTGATCATTCGCCTCCC 59.124 52.381 0.00 0.00 0.00 4.30
529 563 6.097696 TCGACATGAAGTGAGGGTATAAATGA 59.902 38.462 0.00 0.00 0.00 2.57
533 567 5.902681 TGAAGTGAGGGTATAAATGAGTCG 58.097 41.667 0.00 0.00 0.00 4.18
536 570 5.138276 AGTGAGGGTATAAATGAGTCGCTA 58.862 41.667 0.00 0.00 0.00 4.26
541 575 5.243283 AGGGTATAAATGAGTCGCTACGAAT 59.757 40.000 0.00 0.00 37.72 3.34
544 578 7.061557 GGGTATAAATGAGTCGCTACGAATTAC 59.938 40.741 0.00 0.00 37.72 1.89
549 583 3.119602 TGAGTCGCTACGAATTACAAGCT 60.120 43.478 0.00 0.00 37.72 3.74
577 612 7.063426 TGTTTGTGCAAAAATATTTCAACACGA 59.937 29.630 5.11 13.69 31.38 4.35
585 620 8.357966 CAAAAATATTTCAACACGACGAATCTG 58.642 33.333 0.00 0.00 0.00 2.90
602 637 3.251479 TCTGTATTTCGCTGTCAGCAT 57.749 42.857 24.13 12.73 42.58 3.79
615 650 4.813161 GCTGTCAGCATATGTTACATGACT 59.187 41.667 20.16 0.00 41.89 3.41
616 651 5.277202 GCTGTCAGCATATGTTACATGACTG 60.277 44.000 20.16 12.10 41.89 3.51
618 653 4.813161 GTCAGCATATGTTACATGACTGCT 59.187 41.667 19.06 19.06 38.93 4.24
619 654 5.985530 GTCAGCATATGTTACATGACTGCTA 59.014 40.000 22.08 13.18 36.41 3.49
621 656 6.479990 TCAGCATATGTTACATGACTGCTAAC 59.520 38.462 22.08 0.00 36.41 2.34
622 657 5.760253 AGCATATGTTACATGACTGCTAACC 59.240 40.000 21.57 2.48 36.77 2.85
642 743 4.395625 ACCTTAACTTAAACCACCTCAGC 58.604 43.478 0.00 0.00 0.00 4.26
652 753 0.804989 CCACCTCAGCGACCATTTTC 59.195 55.000 0.00 0.00 0.00 2.29
664 765 4.437390 GCGACCATTTTCAGGTACATTGAG 60.437 45.833 0.00 0.00 40.09 3.02
680 781 8.467598 GGTACATTGAGATCTAGTGACAAAGTA 58.532 37.037 0.00 0.30 0.00 2.24
743 844 2.887152 ACTCTTTCTTCAATGGCACCAC 59.113 45.455 0.00 0.00 0.00 4.16
744 845 3.152341 CTCTTTCTTCAATGGCACCACT 58.848 45.455 0.00 0.00 0.00 4.00
745 846 3.149196 TCTTTCTTCAATGGCACCACTC 58.851 45.455 0.00 0.00 0.00 3.51
746 847 2.655090 TTCTTCAATGGCACCACTCA 57.345 45.000 0.00 0.00 0.00 3.41
747 848 2.189594 TCTTCAATGGCACCACTCAG 57.810 50.000 0.00 0.00 0.00 3.35
751 861 2.665165 TCAATGGCACCACTCAGTTTT 58.335 42.857 0.00 0.00 0.00 2.43
774 884 2.770164 TTAGGAAACCAGCTCAGCTC 57.230 50.000 0.00 0.00 36.40 4.09
784 894 2.125753 CTCAGCTCGTGACCTGGC 60.126 66.667 0.00 0.00 0.00 4.85
798 908 4.804420 TGGCCCGCCCAGAGAGAT 62.804 66.667 0.00 0.00 39.18 2.75
799 909 2.524394 GGCCCGCCCAGAGAGATA 60.524 66.667 0.00 0.00 0.00 1.98
800 910 1.915769 GGCCCGCCCAGAGAGATAT 60.916 63.158 0.00 0.00 0.00 1.63
801 911 0.614979 GGCCCGCCCAGAGAGATATA 60.615 60.000 0.00 0.00 0.00 0.86
802 912 0.820871 GCCCGCCCAGAGAGATATAG 59.179 60.000 0.00 0.00 0.00 1.31
803 913 1.617263 GCCCGCCCAGAGAGATATAGA 60.617 57.143 0.00 0.00 0.00 1.98
804 914 2.374184 CCCGCCCAGAGAGATATAGAG 58.626 57.143 0.00 0.00 0.00 2.43
805 915 2.374184 CCGCCCAGAGAGATATAGAGG 58.626 57.143 0.00 0.00 0.00 3.69
806 916 2.025793 CCGCCCAGAGAGATATAGAGGA 60.026 54.545 0.00 0.00 0.00 3.71
807 917 3.372566 CCGCCCAGAGAGATATAGAGGAT 60.373 52.174 0.00 0.00 0.00 3.24
808 918 4.277476 CGCCCAGAGAGATATAGAGGATT 58.723 47.826 0.00 0.00 0.00 3.01
809 919 4.709397 CGCCCAGAGAGATATAGAGGATTT 59.291 45.833 0.00 0.00 0.00 2.17
810 920 5.186797 CGCCCAGAGAGATATAGAGGATTTT 59.813 44.000 0.00 0.00 0.00 1.82
811 921 6.295575 CGCCCAGAGAGATATAGAGGATTTTT 60.296 42.308 0.00 0.00 0.00 1.94
843 953 4.555689 AGCCCAAGAGAGATAGAAGATGT 58.444 43.478 0.00 0.00 0.00 3.06
844 954 4.344679 AGCCCAAGAGAGATAGAAGATGTG 59.655 45.833 0.00 0.00 0.00 3.21
845 955 4.343526 GCCCAAGAGAGATAGAAGATGTGA 59.656 45.833 0.00 0.00 0.00 3.58
846 956 5.509501 GCCCAAGAGAGATAGAAGATGTGAG 60.510 48.000 0.00 0.00 0.00 3.51
847 957 5.598005 CCCAAGAGAGATAGAAGATGTGAGT 59.402 44.000 0.00 0.00 0.00 3.41
848 958 6.775142 CCCAAGAGAGATAGAAGATGTGAGTA 59.225 42.308 0.00 0.00 0.00 2.59
849 959 7.255451 CCCAAGAGAGATAGAAGATGTGAGTAC 60.255 44.444 0.00 0.00 0.00 2.73
864 974 5.322754 TGTGAGTACAAGCCTTCTAGTACT 58.677 41.667 0.00 0.00 46.99 2.73
865 975 6.479006 TGTGAGTACAAGCCTTCTAGTACTA 58.521 40.000 1.89 1.89 45.05 1.82
866 976 7.117397 TGTGAGTACAAGCCTTCTAGTACTAT 58.883 38.462 2.33 0.00 45.05 2.12
867 977 7.614583 TGTGAGTACAAGCCTTCTAGTACTATT 59.385 37.037 2.33 0.00 45.05 1.73
868 978 8.468399 GTGAGTACAAGCCTTCTAGTACTATTT 58.532 37.037 2.33 0.00 45.05 1.40
869 979 9.032624 TGAGTACAAGCCTTCTAGTACTATTTT 57.967 33.333 2.33 0.00 45.05 1.82
870 980 9.872721 GAGTACAAGCCTTCTAGTACTATTTTT 57.127 33.333 2.33 0.00 45.05 1.94
898 1008 9.516546 TTGAGACACTTCTAGTACTATTCTTGA 57.483 33.333 2.33 0.00 29.47 3.02
899 1009 9.516546 TGAGACACTTCTAGTACTATTCTTGAA 57.483 33.333 2.33 2.50 29.47 2.69
900 1010 9.997482 GAGACACTTCTAGTACTATTCTTGAAG 57.003 37.037 19.63 19.63 44.16 3.02
901 1011 8.962679 AGACACTTCTAGTACTATTCTTGAAGG 58.037 37.037 22.75 16.83 43.50 3.46
902 1012 8.653036 ACACTTCTAGTACTATTCTTGAAGGT 57.347 34.615 22.75 17.24 43.50 3.50
903 1013 9.750783 ACACTTCTAGTACTATTCTTGAAGGTA 57.249 33.333 22.75 0.00 43.50 3.08
905 1015 9.978336 ACTTCTAGTACTATTCTTGAAGGTACT 57.022 33.333 22.75 22.35 43.50 2.73
907 1017 8.977267 TCTAGTACTATTCTTGAAGGTACTCC 57.023 38.462 22.37 6.39 41.09 3.85
909 1019 7.885009 AGTACTATTCTTGAAGGTACTCCTC 57.115 40.000 17.62 0.00 44.35 3.71
910 1020 7.411808 AGTACTATTCTTGAAGGTACTCCTCA 58.588 38.462 17.62 0.00 44.35 3.86
911 1021 7.894364 AGTACTATTCTTGAAGGTACTCCTCAA 59.106 37.037 17.62 0.00 44.35 3.02
912 1022 7.176589 ACTATTCTTGAAGGTACTCCTCAAG 57.823 40.000 18.29 18.29 44.35 3.02
913 1023 6.954684 ACTATTCTTGAAGGTACTCCTCAAGA 59.045 38.462 20.92 20.92 45.14 3.02
916 1026 6.494666 TCTTGAAGGTACTCCTCAAGAAAA 57.505 37.500 21.80 8.80 44.61 2.29
917 1027 6.895782 TCTTGAAGGTACTCCTCAAGAAAAA 58.104 36.000 21.80 8.56 44.61 1.94
1002 1112 0.179215 GACGTGAAAAGCAGGCGATG 60.179 55.000 0.00 0.00 35.84 3.84
1332 1460 0.034616 GACTCTGGCTGTGCTGAAGT 59.965 55.000 0.00 0.00 0.00 3.01
1371 1499 4.974368 TTAGGTGAATTTGGGCGTATTG 57.026 40.909 0.00 0.00 0.00 1.90
1373 1501 1.822371 GGTGAATTTGGGCGTATTGGT 59.178 47.619 0.00 0.00 0.00 3.67
1375 1503 3.249917 GTGAATTTGGGCGTATTGGTTG 58.750 45.455 0.00 0.00 0.00 3.77
1390 1519 6.209986 CGTATTGGTTGGTGGTATCTATCCTA 59.790 42.308 0.00 0.00 0.00 2.94
1395 1524 7.878495 TGGTTGGTGGTATCTATCCTATTTTT 58.122 34.615 0.00 0.00 0.00 1.94
1448 1577 0.893727 GCCGGTGTTCTGGAATTGGT 60.894 55.000 1.90 0.00 42.46 3.67
1535 1665 4.572389 AGCGACATGGTTGATATTCTGAAC 59.428 41.667 0.00 0.00 0.00 3.18
1616 1746 5.954752 TGATTGTTTGTTATGCCTAATGGGA 59.045 36.000 0.00 0.00 38.31 4.37
1638 1768 6.434340 GGGAAGGTCAATTTCTTAGTGAACAT 59.566 38.462 0.00 0.00 40.95 2.71
1658 1788 9.681692 TGAACATCATAGATTTGTTGAACTTTG 57.318 29.630 0.00 0.00 33.92 2.77
1775 1908 7.344913 AGTGGATTCTTCATAGCTCAGAATTT 58.655 34.615 10.22 0.00 37.38 1.82
1805 1938 3.248495 AGTTTCTTCGTAAGCCCTAGC 57.752 47.619 0.00 0.00 40.32 3.42
1806 1939 2.093606 AGTTTCTTCGTAAGCCCTAGCC 60.094 50.000 0.00 0.00 41.25 3.93
1826 1959 1.367659 GTTTGTTTGCAGCAAGCCAA 58.632 45.000 18.33 16.43 44.83 4.52
1888 2021 5.212194 CAAAGTTTTGTACCTTGACATCCG 58.788 41.667 0.00 0.00 31.09 4.18
2006 2140 9.664332 AATTTAGTATTTTGTTTGCATGCCATA 57.336 25.926 16.68 0.00 0.00 2.74
2023 2157 6.588719 TGCCATATTTGCAACTCTTTACTT 57.411 33.333 0.00 0.00 35.40 2.24
2024 2158 6.620678 TGCCATATTTGCAACTCTTTACTTC 58.379 36.000 0.00 0.00 35.40 3.01
2106 2240 3.802685 AGCGTTGTTCTTCTACTGTTGAC 59.197 43.478 0.00 0.00 0.00 3.18
2209 2343 4.946784 ACGCAACAAATTATCTGGTCTC 57.053 40.909 0.00 0.00 0.00 3.36
2658 2792 3.281727 TGGAGCTGCTAAAGGTAATGG 57.718 47.619 6.82 0.00 36.52 3.16
3119 3253 6.408107 TTTATTGGTAACTTGGACCCAAAC 57.592 37.500 2.84 0.00 40.16 2.93
3234 3368 6.989169 ACAATATGCATCTAGGTGAGTCTTTC 59.011 38.462 7.33 0.00 0.00 2.62
3353 3489 2.126734 GCAATGCCTCGTGTGTGC 60.127 61.111 0.00 0.00 0.00 4.57
3361 3497 3.491508 CTCGTGTGTGCGTGTGTGC 62.492 63.158 0.00 0.00 0.00 4.57
3362 3498 4.918060 CGTGTGTGCGTGTGTGCG 62.918 66.667 0.00 0.00 37.81 5.34
3371 3507 1.421877 CGTGTGTGCGTGTGTTTGA 59.578 52.632 0.00 0.00 0.00 2.69
3375 3511 2.920490 GTGTGTGCGTGTGTTTGATTTT 59.080 40.909 0.00 0.00 0.00 1.82
3701 3837 4.276642 AGGGAGGAGCAAAATTGATCTTC 58.723 43.478 13.22 13.22 45.39 2.87
3743 3879 4.752101 GCCTATAATGTTCTACTGTGGCTG 59.248 45.833 0.00 0.00 34.42 4.85
3831 3967 4.882671 AATGTCCGAATGATGCAAGTAC 57.117 40.909 0.00 0.00 0.00 2.73
4044 4180 9.258826 CCTGACATCTAGTAATCTCTCAAATTG 57.741 37.037 0.00 0.00 0.00 2.32
4098 4234 4.081420 TGTTAATTTTGGGTTGTGCAGTGT 60.081 37.500 0.00 0.00 0.00 3.55
4115 4251 4.557296 GCAGTGTTGAGCATGCTAAAGAAA 60.557 41.667 22.74 5.40 35.78 2.52
4117 4253 6.154445 CAGTGTTGAGCATGCTAAAGAAAAT 58.846 36.000 22.74 4.70 0.00 1.82
4120 4256 8.359642 AGTGTTGAGCATGCTAAAGAAAATTTA 58.640 29.630 22.74 0.00 0.00 1.40
4424 4564 2.097978 ATCCCCAACAGGCAAGGCTT 62.098 55.000 0.00 0.00 0.00 4.35
4425 4565 1.838396 CCCCAACAGGCAAGGCTTT 60.838 57.895 0.00 0.00 0.00 3.51
4613 4753 4.794278 TGTTTCTACCAATAGAGACGCA 57.206 40.909 1.87 0.00 42.75 5.24
4705 4845 8.648693 AGAAAGTATATATTTGACTTACGCCCT 58.351 33.333 0.80 0.00 33.13 5.19
4706 4846 9.918630 GAAAGTATATATTTGACTTACGCCCTA 57.081 33.333 0.80 0.00 33.13 3.53
4815 4955 3.156293 TGTACACATGGCTCTTGCATTT 58.844 40.909 0.00 0.00 41.91 2.32
4816 4956 4.331108 TGTACACATGGCTCTTGCATTTA 58.669 39.130 0.00 0.00 41.91 1.40
4817 4957 3.855689 ACACATGGCTCTTGCATTTAC 57.144 42.857 0.00 0.00 41.91 2.01
4818 4958 3.156293 ACACATGGCTCTTGCATTTACA 58.844 40.909 0.00 0.00 41.91 2.41
4819 4959 3.192001 ACACATGGCTCTTGCATTTACAG 59.808 43.478 0.00 0.00 41.91 2.74
4908 5048 5.108187 AGTCAGCATCATCTTGTAACCAT 57.892 39.130 0.00 0.00 0.00 3.55
4909 5049 5.503927 AGTCAGCATCATCTTGTAACCATT 58.496 37.500 0.00 0.00 0.00 3.16
4963 5103 1.132453 CTGATGCATGCACCTGAACAG 59.868 52.381 25.37 19.31 0.00 3.16
4980 5120 8.103305 ACCTGAACAGTTTATCATGTGTATCTT 58.897 33.333 0.00 0.00 0.00 2.40
5001 5141 7.677454 TCTTGGCAATATAGCTGATAACATG 57.323 36.000 0.00 0.00 34.17 3.21
5003 5143 7.720957 TCTTGGCAATATAGCTGATAACATGTT 59.279 33.333 16.68 16.68 34.17 2.71
5004 5144 7.439157 TGGCAATATAGCTGATAACATGTTC 57.561 36.000 15.85 1.96 34.17 3.18
5006 5146 7.720957 TGGCAATATAGCTGATAACATGTTCTT 59.279 33.333 15.85 3.81 34.17 2.52
5007 5147 8.019669 GGCAATATAGCTGATAACATGTTCTTG 58.980 37.037 15.85 5.48 34.17 3.02
5124 5270 1.799258 CTGCTCCACAACAAGGCCAC 61.799 60.000 5.01 0.00 0.00 5.01
5159 5306 6.773200 GCTATATTTGGCTTCCTCTTAACCTT 59.227 38.462 0.00 0.00 0.00 3.50
5161 5308 3.434940 TTGGCTTCCTCTTAACCTTCC 57.565 47.619 0.00 0.00 0.00 3.46
5162 5309 2.632537 TGGCTTCCTCTTAACCTTCCT 58.367 47.619 0.00 0.00 0.00 3.36
5163 5310 2.305927 TGGCTTCCTCTTAACCTTCCTG 59.694 50.000 0.00 0.00 0.00 3.86
5382 5530 7.414222 ACATATGGAGCAAAATGAGTGAATT 57.586 32.000 7.80 0.00 0.00 2.17
5621 5777 3.195661 CTCAGCCCTGACGTTTTATACC 58.804 50.000 0.00 0.00 35.46 2.73
5632 5788 3.056322 ACGTTTTATACCGCTGACCTCTT 60.056 43.478 0.00 0.00 0.00 2.85
5633 5789 4.158394 ACGTTTTATACCGCTGACCTCTTA 59.842 41.667 0.00 0.00 0.00 2.10
5702 5860 2.613026 TACATGGCGGTTCATGGTAG 57.387 50.000 14.50 0.00 46.33 3.18
5821 5979 6.145209 GCCTTCTTTTCTGAAGATTTTTGAGC 59.855 38.462 5.90 0.00 44.40 4.26
5848 6006 1.674962 CCCCTCCGAGAAGTAACTACG 59.325 57.143 0.00 0.00 0.00 3.51
5859 6017 4.159879 AGAAGTAACTACGGGGTTGAGATG 59.840 45.833 5.70 0.00 0.00 2.90
5926 6084 5.394802 GTCGCATGTACTATGATGTAGGAG 58.605 45.833 8.81 0.00 0.00 3.69
5933 6091 7.628501 TGTACTATGATGTAGGAGACCTCTA 57.371 40.000 0.00 0.00 34.61 2.43
5973 6131 8.527810 CCTGGTTTATCTAAAGTTATTGCCAAA 58.472 33.333 0.00 0.00 0.00 3.28
6012 6170 2.061509 TGCCATGCAGCATAGAATGT 57.938 45.000 7.82 0.00 38.00 2.71
6019 6179 5.290158 CCATGCAGCATAGAATGTGTTTTTC 59.710 40.000 7.82 0.00 0.00 2.29
6031 6191 3.061322 TGTGTTTTTCGTATCCTGACCG 58.939 45.455 0.00 0.00 0.00 4.79
6041 6201 2.507110 ATCCTGACCGTCTTGTGCCG 62.507 60.000 0.00 0.00 0.00 5.69
6046 6206 3.414700 CCGTCTTGTGCCGCAGAC 61.415 66.667 0.00 0.00 0.00 3.51
6048 6208 2.029288 CGTCTTGTGCCGCAGACAT 61.029 57.895 10.75 0.00 0.00 3.06
6049 6209 1.568612 CGTCTTGTGCCGCAGACATT 61.569 55.000 10.75 0.00 0.00 2.71
6050 6210 1.438651 GTCTTGTGCCGCAGACATTA 58.561 50.000 6.41 0.00 0.00 1.90
6063 6257 4.320494 CGCAGACATTAGGGAAATATTGCC 60.320 45.833 3.49 3.49 42.22 4.52
6072 6266 0.249031 GAAATATTGCCGCCTGGTGC 60.249 55.000 0.55 2.41 37.67 5.01
6084 6278 1.586422 CCTGGTGCGGTCATAATCTG 58.414 55.000 0.00 0.00 0.00 2.90
6124 6318 0.798776 CAGGCATCGTTGGTTCAGAC 59.201 55.000 0.00 0.00 0.00 3.51
6125 6319 0.687354 AGGCATCGTTGGTTCAGACT 59.313 50.000 0.00 0.00 0.00 3.24
6126 6320 1.072331 AGGCATCGTTGGTTCAGACTT 59.928 47.619 0.00 0.00 0.00 3.01
6127 6321 1.464997 GGCATCGTTGGTTCAGACTTC 59.535 52.381 0.00 0.00 0.00 3.01
6128 6322 2.143122 GCATCGTTGGTTCAGACTTCA 58.857 47.619 0.00 0.00 0.00 3.02
6129 6323 2.158449 GCATCGTTGGTTCAGACTTCAG 59.842 50.000 0.00 0.00 0.00 3.02
6130 6324 3.653344 CATCGTTGGTTCAGACTTCAGA 58.347 45.455 0.00 0.00 0.00 3.27
6215 6696 3.634568 ATCCGATGATTCTCTCGTGTC 57.365 47.619 7.92 0.00 33.11 3.67
6245 6730 6.872920 TCTGTGCATCATGTAGTAATGTGTA 58.127 36.000 0.00 0.00 0.00 2.90
6248 6733 4.506288 TGCATCATGTAGTAATGTGTACGC 59.494 41.667 0.00 0.00 0.00 4.42
6260 6745 3.376078 GTACGCGGTGTCTCCCCA 61.376 66.667 12.47 0.00 0.00 4.96
6267 6752 1.889530 CGGTGTCTCCCCACTTCTCC 61.890 65.000 0.00 0.00 35.63 3.71
6285 6770 1.535204 CCAATGTCTGGGTGGTTGCC 61.535 60.000 0.00 0.00 42.17 4.52
6329 6814 2.434359 CTCCCCGTCCTGAAACGC 60.434 66.667 0.00 0.00 41.26 4.84
6330 6815 3.234630 CTCCCCGTCCTGAAACGCA 62.235 63.158 0.00 0.00 41.26 5.24
6353 6838 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
6354 6839 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
6355 6840 3.567797 GCATCTCCAGCCGTTCGC 61.568 66.667 0.00 0.00 37.98 4.70
6356 6841 2.125552 CATCTCCAGCCGTTCGCA 60.126 61.111 0.00 0.00 41.38 5.10
6357 6842 1.741401 CATCTCCAGCCGTTCGCAA 60.741 57.895 0.00 0.00 41.38 4.85
6358 6843 1.741770 ATCTCCAGCCGTTCGCAAC 60.742 57.895 0.00 0.00 41.38 4.17
6359 6844 3.423154 CTCCAGCCGTTCGCAACC 61.423 66.667 0.00 0.00 41.38 3.77
6363 6848 4.572571 AGCCGTTCGCAACCCCAA 62.573 61.111 0.00 0.00 41.38 4.12
6364 6849 4.038080 GCCGTTCGCAACCCCAAG 62.038 66.667 0.00 0.00 37.47 3.61
6365 6850 2.281208 CCGTTCGCAACCCCAAGA 60.281 61.111 0.00 0.00 0.00 3.02
6366 6851 1.894756 CCGTTCGCAACCCCAAGAA 60.895 57.895 0.00 0.00 0.00 2.52
6367 6852 1.281656 CGTTCGCAACCCCAAGAAC 59.718 57.895 0.00 0.00 39.46 3.01
6368 6853 1.440938 CGTTCGCAACCCCAAGAACA 61.441 55.000 7.74 0.00 42.01 3.18
6369 6854 0.030235 GTTCGCAACCCCAAGAACAC 59.970 55.000 2.75 0.00 41.66 3.32
6370 6855 1.104577 TTCGCAACCCCAAGAACACC 61.105 55.000 0.00 0.00 0.00 4.16
6371 6856 1.826054 CGCAACCCCAAGAACACCA 60.826 57.895 0.00 0.00 0.00 4.17
6372 6857 1.739667 GCAACCCCAAGAACACCAC 59.260 57.895 0.00 0.00 0.00 4.16
6373 6858 1.744320 GCAACCCCAAGAACACCACC 61.744 60.000 0.00 0.00 0.00 4.61
6374 6859 1.152839 AACCCCAAGAACACCACCG 60.153 57.895 0.00 0.00 0.00 4.94
6375 6860 1.637724 AACCCCAAGAACACCACCGA 61.638 55.000 0.00 0.00 0.00 4.69
6376 6861 1.149627 CCCCAAGAACACCACCGAA 59.850 57.895 0.00 0.00 0.00 4.30
6377 6862 1.170290 CCCCAAGAACACCACCGAAC 61.170 60.000 0.00 0.00 0.00 3.95
6378 6863 1.170290 CCCAAGAACACCACCGAACC 61.170 60.000 0.00 0.00 0.00 3.62
6379 6864 0.464735 CCAAGAACACCACCGAACCA 60.465 55.000 0.00 0.00 0.00 3.67
6380 6865 1.384525 CAAGAACACCACCGAACCAA 58.615 50.000 0.00 0.00 0.00 3.67
6381 6866 1.746220 CAAGAACACCACCGAACCAAA 59.254 47.619 0.00 0.00 0.00 3.28
6382 6867 2.131776 AGAACACCACCGAACCAAAA 57.868 45.000 0.00 0.00 0.00 2.44
6383 6868 2.448453 AGAACACCACCGAACCAAAAA 58.552 42.857 0.00 0.00 0.00 1.94
6401 6886 3.382083 AAAAGTTGGTGTCTTGAGGGT 57.618 42.857 0.00 0.00 0.00 4.34
6402 6887 2.640316 AAGTTGGTGTCTTGAGGGTC 57.360 50.000 0.00 0.00 0.00 4.46
6403 6888 1.507140 AGTTGGTGTCTTGAGGGTCA 58.493 50.000 0.00 0.00 0.00 4.02
6404 6889 2.057922 AGTTGGTGTCTTGAGGGTCAT 58.942 47.619 0.00 0.00 0.00 3.06
6405 6890 2.443255 AGTTGGTGTCTTGAGGGTCATT 59.557 45.455 0.00 0.00 0.00 2.57
6406 6891 2.814336 GTTGGTGTCTTGAGGGTCATTC 59.186 50.000 0.00 0.00 0.00 2.67
6407 6892 1.001974 TGGTGTCTTGAGGGTCATTCG 59.998 52.381 0.00 0.00 0.00 3.34
6408 6893 1.676014 GGTGTCTTGAGGGTCATTCGG 60.676 57.143 0.00 0.00 0.00 4.30
6409 6894 0.036388 TGTCTTGAGGGTCATTCGGC 60.036 55.000 0.00 0.00 0.00 5.54
6410 6895 1.084370 GTCTTGAGGGTCATTCGGCG 61.084 60.000 0.00 0.00 0.00 6.46
6411 6896 1.218047 CTTGAGGGTCATTCGGCGA 59.782 57.895 4.99 4.99 0.00 5.54
6412 6897 0.391130 CTTGAGGGTCATTCGGCGAA 60.391 55.000 25.88 25.88 0.00 4.70
6413 6898 0.035598 TTGAGGGTCATTCGGCGAAA 59.964 50.000 27.40 8.34 0.00 3.46
6414 6899 0.251916 TGAGGGTCATTCGGCGAAAT 59.748 50.000 27.40 12.25 0.00 2.17
6415 6900 1.483004 TGAGGGTCATTCGGCGAAATA 59.517 47.619 27.40 14.58 0.00 1.40
6416 6901 2.093394 TGAGGGTCATTCGGCGAAATAA 60.093 45.455 27.40 11.93 0.00 1.40
6417 6902 2.940410 GAGGGTCATTCGGCGAAATAAA 59.060 45.455 27.40 9.33 0.00 1.40
6418 6903 2.943033 AGGGTCATTCGGCGAAATAAAG 59.057 45.455 27.40 13.68 0.00 1.85
6419 6904 2.940410 GGGTCATTCGGCGAAATAAAGA 59.060 45.455 27.40 15.66 0.00 2.52
6420 6905 3.375922 GGGTCATTCGGCGAAATAAAGAA 59.624 43.478 27.40 0.31 0.00 2.52
6421 6906 4.495844 GGGTCATTCGGCGAAATAAAGAAG 60.496 45.833 27.40 8.99 0.00 2.85
6422 6907 4.331717 GGTCATTCGGCGAAATAAAGAAGA 59.668 41.667 27.40 11.02 0.00 2.87
6423 6908 5.256352 GTCATTCGGCGAAATAAAGAAGAC 58.744 41.667 27.40 17.73 0.00 3.01
6424 6909 4.932799 TCATTCGGCGAAATAAAGAAGACA 59.067 37.500 27.40 0.00 0.00 3.41
6425 6910 5.584649 TCATTCGGCGAAATAAAGAAGACAT 59.415 36.000 27.40 1.68 0.00 3.06
6426 6911 5.464965 TTCGGCGAAATAAAGAAGACATC 57.535 39.130 21.53 0.00 0.00 3.06
6427 6912 4.755411 TCGGCGAAATAAAGAAGACATCT 58.245 39.130 7.35 0.00 41.32 2.90
6438 6923 3.685139 GAAGACATCTTCCCAGTCACA 57.315 47.619 10.06 0.00 44.93 3.58
6439 6924 4.213564 GAAGACATCTTCCCAGTCACAT 57.786 45.455 10.06 0.00 44.93 3.21
6440 6925 3.902881 AGACATCTTCCCAGTCACATC 57.097 47.619 0.00 0.00 34.80 3.06
6441 6926 2.503356 AGACATCTTCCCAGTCACATCC 59.497 50.000 0.00 0.00 34.80 3.51
6442 6927 1.561542 ACATCTTCCCAGTCACATCCC 59.438 52.381 0.00 0.00 0.00 3.85
6443 6928 1.561076 CATCTTCCCAGTCACATCCCA 59.439 52.381 0.00 0.00 0.00 4.37
6444 6929 0.984230 TCTTCCCAGTCACATCCCAC 59.016 55.000 0.00 0.00 0.00 4.61
6445 6930 0.035056 CTTCCCAGTCACATCCCACC 60.035 60.000 0.00 0.00 0.00 4.61
6446 6931 1.497309 TTCCCAGTCACATCCCACCC 61.497 60.000 0.00 0.00 0.00 4.61
6447 6932 2.677228 CCAGTCACATCCCACCCC 59.323 66.667 0.00 0.00 0.00 4.95
6448 6933 2.230653 CCAGTCACATCCCACCCCA 61.231 63.158 0.00 0.00 0.00 4.96
6449 6934 1.767036 CAGTCACATCCCACCCCAA 59.233 57.895 0.00 0.00 0.00 4.12
6450 6935 0.322816 CAGTCACATCCCACCCCAAG 60.323 60.000 0.00 0.00 0.00 3.61
6451 6936 1.678970 GTCACATCCCACCCCAAGC 60.679 63.158 0.00 0.00 0.00 4.01
6452 6937 2.159490 TCACATCCCACCCCAAGCA 61.159 57.895 0.00 0.00 0.00 3.91
6453 6938 1.228831 CACATCCCACCCCAAGCAA 60.229 57.895 0.00 0.00 0.00 3.91
6454 6939 0.831288 CACATCCCACCCCAAGCAAA 60.831 55.000 0.00 0.00 0.00 3.68
6455 6940 0.105246 ACATCCCACCCCAAGCAAAA 60.105 50.000 0.00 0.00 0.00 2.44
6456 6941 0.609662 CATCCCACCCCAAGCAAAAG 59.390 55.000 0.00 0.00 0.00 2.27
6457 6942 0.190815 ATCCCACCCCAAGCAAAAGT 59.809 50.000 0.00 0.00 0.00 2.66
6458 6943 0.031616 TCCCACCCCAAGCAAAAGTT 60.032 50.000 0.00 0.00 0.00 2.66
6459 6944 0.836606 CCCACCCCAAGCAAAAGTTT 59.163 50.000 0.00 0.00 0.00 2.66
6460 6945 1.474855 CCCACCCCAAGCAAAAGTTTG 60.475 52.381 0.00 0.00 41.03 2.93
6461 6946 1.209261 CCACCCCAAGCAAAAGTTTGT 59.791 47.619 5.71 0.00 40.24 2.83
6462 6947 2.278854 CACCCCAAGCAAAAGTTTGTG 58.721 47.619 5.71 0.00 40.24 3.33
6463 6948 2.093764 CACCCCAAGCAAAAGTTTGTGA 60.094 45.455 5.71 0.00 40.24 3.58
6464 6949 2.168313 ACCCCAAGCAAAAGTTTGTGAG 59.832 45.455 5.71 0.00 40.24 3.51
6465 6950 2.483538 CCCCAAGCAAAAGTTTGTGAGG 60.484 50.000 5.71 5.04 40.24 3.86
6466 6951 2.430332 CCCAAGCAAAAGTTTGTGAGGA 59.570 45.455 5.71 0.00 40.24 3.71
6467 6952 3.491447 CCCAAGCAAAAGTTTGTGAGGAG 60.491 47.826 5.71 0.00 40.24 3.69
6468 6953 3.381272 CCAAGCAAAAGTTTGTGAGGAGA 59.619 43.478 5.71 0.00 40.24 3.71
6469 6954 4.142182 CCAAGCAAAAGTTTGTGAGGAGAA 60.142 41.667 5.71 0.00 40.24 2.87
6470 6955 5.452356 CCAAGCAAAAGTTTGTGAGGAGAAT 60.452 40.000 5.71 0.00 40.24 2.40
6471 6956 5.192327 AGCAAAAGTTTGTGAGGAGAATG 57.808 39.130 5.71 0.00 40.24 2.67
6472 6957 4.889409 AGCAAAAGTTTGTGAGGAGAATGA 59.111 37.500 5.71 0.00 40.24 2.57
6473 6958 5.537674 AGCAAAAGTTTGTGAGGAGAATGAT 59.462 36.000 5.71 0.00 40.24 2.45
6474 6959 6.041296 AGCAAAAGTTTGTGAGGAGAATGATT 59.959 34.615 5.71 0.00 40.24 2.57
6475 6960 7.231317 AGCAAAAGTTTGTGAGGAGAATGATTA 59.769 33.333 5.71 0.00 40.24 1.75
6476 6961 7.867403 GCAAAAGTTTGTGAGGAGAATGATTAA 59.133 33.333 5.71 0.00 40.24 1.40
6477 6962 9.403110 CAAAAGTTTGTGAGGAGAATGATTAAG 57.597 33.333 0.00 0.00 33.59 1.85
6478 6963 8.697507 AAAGTTTGTGAGGAGAATGATTAAGT 57.302 30.769 0.00 0.00 0.00 2.24
6479 6964 7.678947 AGTTTGTGAGGAGAATGATTAAGTG 57.321 36.000 0.00 0.00 0.00 3.16
6480 6965 6.656693 AGTTTGTGAGGAGAATGATTAAGTGG 59.343 38.462 0.00 0.00 0.00 4.00
6481 6966 5.762179 TGTGAGGAGAATGATTAAGTGGT 57.238 39.130 0.00 0.00 0.00 4.16
6482 6967 5.734720 TGTGAGGAGAATGATTAAGTGGTC 58.265 41.667 0.00 0.00 0.00 4.02
6483 6968 5.248248 TGTGAGGAGAATGATTAAGTGGTCA 59.752 40.000 0.00 0.00 0.00 4.02
6484 6969 6.173339 GTGAGGAGAATGATTAAGTGGTCAA 58.827 40.000 0.00 0.00 0.00 3.18
6485 6970 6.655003 GTGAGGAGAATGATTAAGTGGTCAAA 59.345 38.462 0.00 0.00 0.00 2.69
6486 6971 6.881065 TGAGGAGAATGATTAAGTGGTCAAAG 59.119 38.462 0.00 0.00 0.00 2.77
6487 6972 7.020827 AGGAGAATGATTAAGTGGTCAAAGA 57.979 36.000 0.00 0.00 0.00 2.52
6488 6973 7.461749 AGGAGAATGATTAAGTGGTCAAAGAA 58.538 34.615 0.00 0.00 0.00 2.52
6489 6974 7.944554 AGGAGAATGATTAAGTGGTCAAAGAAA 59.055 33.333 0.00 0.00 0.00 2.52
6490 6975 8.576442 GGAGAATGATTAAGTGGTCAAAGAAAA 58.424 33.333 0.00 0.00 0.00 2.29
6491 6976 9.617975 GAGAATGATTAAGTGGTCAAAGAAAAG 57.382 33.333 0.00 0.00 0.00 2.27
6492 6977 8.579863 AGAATGATTAAGTGGTCAAAGAAAAGG 58.420 33.333 0.00 0.00 0.00 3.11
6493 6978 8.477419 AATGATTAAGTGGTCAAAGAAAAGGA 57.523 30.769 0.00 0.00 0.00 3.36
6494 6979 7.272037 TGATTAAGTGGTCAAAGAAAAGGAC 57.728 36.000 0.00 0.00 0.00 3.85
6495 6980 6.831353 TGATTAAGTGGTCAAAGAAAAGGACA 59.169 34.615 0.00 0.00 33.26 4.02
6496 6981 7.505585 TGATTAAGTGGTCAAAGAAAAGGACAT 59.494 33.333 0.00 0.00 33.26 3.06
6497 6982 5.520376 AAGTGGTCAAAGAAAAGGACATG 57.480 39.130 0.00 0.00 33.26 3.21
6498 6983 4.536765 AGTGGTCAAAGAAAAGGACATGT 58.463 39.130 0.00 0.00 33.26 3.21
6499 6984 4.339247 AGTGGTCAAAGAAAAGGACATGTG 59.661 41.667 1.15 0.00 33.26 3.21
6500 6985 3.636300 TGGTCAAAGAAAAGGACATGTGG 59.364 43.478 1.15 0.00 33.26 4.17
6501 6986 3.636764 GGTCAAAGAAAAGGACATGTGGT 59.363 43.478 1.15 0.00 33.26 4.16
6502 6987 4.499696 GGTCAAAGAAAAGGACATGTGGTG 60.500 45.833 1.15 0.00 33.26 4.17
6503 6988 4.338118 GTCAAAGAAAAGGACATGTGGTGA 59.662 41.667 1.15 0.00 0.00 4.02
6504 6989 4.580167 TCAAAGAAAAGGACATGTGGTGAG 59.420 41.667 1.15 0.00 0.00 3.51
6505 6990 4.437682 AAGAAAAGGACATGTGGTGAGA 57.562 40.909 1.15 0.00 0.00 3.27
6506 6991 3.744660 AGAAAAGGACATGTGGTGAGAC 58.255 45.455 1.15 0.00 0.00 3.36
6507 6992 2.169832 AAAGGACATGTGGTGAGACG 57.830 50.000 1.15 0.00 0.00 4.18
6508 6993 1.338107 AAGGACATGTGGTGAGACGA 58.662 50.000 1.15 0.00 0.00 4.20
6509 6994 1.561643 AGGACATGTGGTGAGACGAT 58.438 50.000 1.15 0.00 0.00 3.73
6510 6995 1.902508 AGGACATGTGGTGAGACGATT 59.097 47.619 1.15 0.00 0.00 3.34
6511 6996 2.093973 AGGACATGTGGTGAGACGATTC 60.094 50.000 1.15 0.00 0.00 2.52
6512 6997 1.920574 GACATGTGGTGAGACGATTCG 59.079 52.381 1.15 4.14 0.00 3.34
6513 6998 0.647410 CATGTGGTGAGACGATTCGC 59.353 55.000 5.86 0.00 0.00 4.70
6514 6999 0.460284 ATGTGGTGAGACGATTCGCC 60.460 55.000 5.86 13.94 45.85 5.54
6516 7001 2.488355 GGTGAGACGATTCGCCGA 59.512 61.111 5.86 0.00 37.93 5.54
6517 7002 1.153901 GGTGAGACGATTCGCCGAA 60.154 57.895 0.33 0.33 37.93 4.30
6518 7003 0.734942 GGTGAGACGATTCGCCGAAA 60.735 55.000 2.60 0.00 37.93 3.46
6519 7004 1.065358 GTGAGACGATTCGCCGAAAA 58.935 50.000 2.60 0.00 0.00 2.29
6520 7005 1.659098 GTGAGACGATTCGCCGAAAAT 59.341 47.619 2.60 0.00 0.00 1.82
6521 7006 2.093783 GTGAGACGATTCGCCGAAAATT 59.906 45.455 2.60 0.00 0.00 1.82
6522 7007 2.739913 TGAGACGATTCGCCGAAAATTT 59.260 40.909 2.60 0.00 0.00 1.82
6523 7008 3.181524 TGAGACGATTCGCCGAAAATTTC 60.182 43.478 2.60 0.00 0.00 2.17
6532 7017 2.878991 GAAAATTTCGGCCGGCGC 60.879 61.111 27.83 12.82 0.00 6.53
6550 7035 3.420943 CCCCCGCGCTATTTTGAG 58.579 61.111 5.56 0.00 0.00 3.02
6551 7036 2.186826 CCCCCGCGCTATTTTGAGG 61.187 63.158 5.56 0.00 0.00 3.86
6552 7037 1.451387 CCCCGCGCTATTTTGAGGT 60.451 57.895 5.56 0.00 0.00 3.85
6553 7038 1.436983 CCCCGCGCTATTTTGAGGTC 61.437 60.000 5.56 0.00 0.00 3.85
6554 7039 1.436983 CCCGCGCTATTTTGAGGTCC 61.437 60.000 5.56 0.00 0.00 4.46
6555 7040 1.636340 CGCGCTATTTTGAGGTCCG 59.364 57.895 5.56 0.00 0.00 4.79
6556 7041 1.762222 CGCGCTATTTTGAGGTCCGG 61.762 60.000 5.56 0.00 0.00 5.14
6557 7042 1.436983 GCGCTATTTTGAGGTCCGGG 61.437 60.000 0.00 0.00 0.00 5.73
6558 7043 0.814010 CGCTATTTTGAGGTCCGGGG 60.814 60.000 0.00 0.00 0.00 5.73
6559 7044 0.465642 GCTATTTTGAGGTCCGGGGG 60.466 60.000 0.00 0.00 0.00 5.40
6577 7062 2.728015 GCGTTGGGCCGTTTTTCG 60.728 61.111 0.00 0.00 39.52 3.46
6604 7089 2.774126 GCCGTCCGCGTCTAAAAC 59.226 61.111 4.92 0.00 36.15 2.43
6605 7090 1.735559 GCCGTCCGCGTCTAAAACT 60.736 57.895 4.92 0.00 36.15 2.66
6606 7091 1.952266 GCCGTCCGCGTCTAAAACTG 61.952 60.000 4.92 0.00 36.15 3.16
6607 7092 0.387622 CCGTCCGCGTCTAAAACTGA 60.388 55.000 4.92 0.00 36.15 3.41
6608 7093 0.982673 CGTCCGCGTCTAAAACTGAG 59.017 55.000 4.92 0.00 0.00 3.35
6609 7094 0.714439 GTCCGCGTCTAAAACTGAGC 59.286 55.000 4.92 0.00 0.00 4.26
6610 7095 0.389426 TCCGCGTCTAAAACTGAGCC 60.389 55.000 4.92 0.00 0.00 4.70
6611 7096 0.389948 CCGCGTCTAAAACTGAGCCT 60.390 55.000 4.92 0.00 0.00 4.58
6612 7097 1.135199 CCGCGTCTAAAACTGAGCCTA 60.135 52.381 4.92 0.00 0.00 3.93
6613 7098 2.602878 CGCGTCTAAAACTGAGCCTAA 58.397 47.619 0.00 0.00 0.00 2.69
6614 7099 2.991190 CGCGTCTAAAACTGAGCCTAAA 59.009 45.455 0.00 0.00 0.00 1.85
6615 7100 3.430895 CGCGTCTAAAACTGAGCCTAAAA 59.569 43.478 0.00 0.00 0.00 1.52
6616 7101 4.084223 CGCGTCTAAAACTGAGCCTAAAAA 60.084 41.667 0.00 0.00 0.00 1.94
6617 7102 5.383130 GCGTCTAAAACTGAGCCTAAAAAG 58.617 41.667 0.00 0.00 0.00 2.27
6618 7103 5.617087 GCGTCTAAAACTGAGCCTAAAAAGG 60.617 44.000 0.00 0.00 0.00 3.11
6628 7113 3.850122 GCCTAAAAAGGCGAAATCACT 57.150 42.857 0.00 0.00 45.79 3.41
6629 7114 4.957759 GCCTAAAAAGGCGAAATCACTA 57.042 40.909 0.00 0.00 45.79 2.74
6630 7115 5.305139 GCCTAAAAAGGCGAAATCACTAA 57.695 39.130 0.00 0.00 45.79 2.24
6631 7116 5.891451 GCCTAAAAAGGCGAAATCACTAAT 58.109 37.500 0.00 0.00 45.79 1.73
6632 7117 6.330278 GCCTAAAAAGGCGAAATCACTAATT 58.670 36.000 0.00 0.00 45.79 1.40
6633 7118 7.477494 GCCTAAAAAGGCGAAATCACTAATTA 58.523 34.615 0.00 0.00 45.79 1.40
6634 7119 7.971722 GCCTAAAAAGGCGAAATCACTAATTAA 59.028 33.333 0.00 0.00 45.79 1.40
6635 7120 9.503427 CCTAAAAAGGCGAAATCACTAATTAAG 57.497 33.333 0.00 0.00 0.00 1.85
6638 7123 9.626045 AAAAAGGCGAAATCACTAATTAAGAAG 57.374 29.630 0.00 0.00 0.00 2.85
6639 7124 7.923414 AAGGCGAAATCACTAATTAAGAAGT 57.077 32.000 0.00 0.00 0.00 3.01
6640 7125 9.444600 AAAGGCGAAATCACTAATTAAGAAGTA 57.555 29.630 0.00 0.00 0.00 2.24
6641 7126 8.421673 AGGCGAAATCACTAATTAAGAAGTAC 57.578 34.615 0.00 0.00 0.00 2.73
6642 7127 8.258708 AGGCGAAATCACTAATTAAGAAGTACT 58.741 33.333 0.00 0.00 0.00 2.73
6643 7128 8.541312 GGCGAAATCACTAATTAAGAAGTACTC 58.459 37.037 0.00 0.00 0.00 2.59
6644 7129 8.541312 GCGAAATCACTAATTAAGAAGTACTCC 58.459 37.037 0.00 0.00 0.00 3.85
6645 7130 9.804758 CGAAATCACTAATTAAGAAGTACTCCT 57.195 33.333 0.00 0.00 0.00 3.69
6648 7133 8.950208 ATCACTAATTAAGAAGTACTCCTTGC 57.050 34.615 4.36 0.00 32.03 4.01
6649 7134 7.033791 TCACTAATTAAGAAGTACTCCTTGCG 58.966 38.462 4.36 0.00 32.03 4.85
6650 7135 6.255887 CACTAATTAAGAAGTACTCCTTGCGG 59.744 42.308 4.36 0.00 32.03 5.69
6651 7136 5.416271 AATTAAGAAGTACTCCTTGCGGA 57.584 39.130 4.36 0.00 37.82 5.54
6674 7159 7.412853 GAGATTACTCCAACTTCTCTAGGTT 57.587 40.000 0.00 0.00 37.19 3.50
6675 7160 7.176589 AGATTACTCCAACTTCTCTAGGTTG 57.823 40.000 3.39 3.39 41.46 3.77
6676 7161 3.686916 ACTCCAACTTCTCTAGGTTGC 57.313 47.619 4.57 0.00 40.75 4.17
6677 7162 2.028930 ACTCCAACTTCTCTAGGTTGCG 60.029 50.000 4.57 1.77 40.75 4.85
6678 7163 2.231478 CTCCAACTTCTCTAGGTTGCGA 59.769 50.000 4.57 3.67 40.75 5.10
6679 7164 2.029290 TCCAACTTCTCTAGGTTGCGAC 60.029 50.000 0.00 0.00 40.75 5.19
6680 7165 2.288825 CCAACTTCTCTAGGTTGCGACA 60.289 50.000 6.39 0.00 40.75 4.35
6681 7166 3.390135 CAACTTCTCTAGGTTGCGACAA 58.610 45.455 6.39 0.00 36.78 3.18
6682 7167 3.305398 ACTTCTCTAGGTTGCGACAAG 57.695 47.619 6.39 2.89 0.00 3.16
6683 7168 2.628657 ACTTCTCTAGGTTGCGACAAGT 59.371 45.455 6.39 3.00 0.00 3.16
6684 7169 2.724977 TCTCTAGGTTGCGACAAGTG 57.275 50.000 6.39 4.18 0.00 3.16
6685 7170 1.272490 TCTCTAGGTTGCGACAAGTGG 59.728 52.381 6.39 1.81 0.00 4.00
6686 7171 0.320421 TCTAGGTTGCGACAAGTGGC 60.320 55.000 6.39 0.00 34.76 5.01
6693 7178 3.276091 CGACAAGTGGCGCCAACA 61.276 61.111 34.66 5.51 40.91 3.33
6694 7179 2.616330 CGACAAGTGGCGCCAACAT 61.616 57.895 34.66 18.11 40.91 2.71
6695 7180 1.081242 GACAAGTGGCGCCAACATG 60.081 57.895 34.66 29.70 0.00 3.21
6696 7181 2.259204 CAAGTGGCGCCAACATGG 59.741 61.111 34.66 14.48 41.55 3.66
6697 7182 2.990967 AAGTGGCGCCAACATGGG 60.991 61.111 34.66 0.00 38.19 4.00
6698 7183 3.505790 AAGTGGCGCCAACATGGGA 62.506 57.895 34.66 1.55 38.19 4.37
6699 7184 3.443045 GTGGCGCCAACATGGGAG 61.443 66.667 34.66 0.00 38.19 4.30
6700 7185 3.965258 TGGCGCCAACATGGGAGT 61.965 61.111 30.74 0.00 38.19 3.85
6701 7186 2.676471 GGCGCCAACATGGGAGTT 60.676 61.111 24.80 0.00 38.19 3.01
6702 7187 2.275380 GGCGCCAACATGGGAGTTT 61.275 57.895 24.80 0.00 38.19 2.66
6703 7188 1.665442 GCGCCAACATGGGAGTTTT 59.335 52.632 0.00 0.00 38.19 2.43
6704 7189 0.033366 GCGCCAACATGGGAGTTTTT 59.967 50.000 0.00 0.00 38.19 1.94
6705 7190 1.934849 GCGCCAACATGGGAGTTTTTC 60.935 52.381 0.00 0.00 38.19 2.29
6706 7191 1.613437 CGCCAACATGGGAGTTTTTCT 59.387 47.619 0.00 0.00 38.19 2.52
6707 7192 2.035832 CGCCAACATGGGAGTTTTTCTT 59.964 45.455 0.00 0.00 38.19 2.52
6708 7193 3.492482 CGCCAACATGGGAGTTTTTCTTT 60.492 43.478 0.00 0.00 38.19 2.52
6709 7194 4.450976 GCCAACATGGGAGTTTTTCTTTT 58.549 39.130 0.00 0.00 38.19 2.27
6710 7195 4.881273 GCCAACATGGGAGTTTTTCTTTTT 59.119 37.500 0.00 0.00 38.19 1.94
6735 7220 9.672086 TTTTTCGTAGATTCGTTCATTCAAAAT 57.328 25.926 0.00 0.00 35.04 1.82
6736 7221 8.653984 TTTCGTAGATTCGTTCATTCAAAATG 57.346 30.769 0.00 0.00 35.04 2.32
6737 7222 7.359262 TCGTAGATTCGTTCATTCAAAATGT 57.641 32.000 0.04 0.00 0.00 2.71
6738 7223 7.802738 TCGTAGATTCGTTCATTCAAAATGTT 58.197 30.769 0.04 0.00 0.00 2.71
6739 7224 8.286800 TCGTAGATTCGTTCATTCAAAATGTTT 58.713 29.630 0.04 0.00 0.00 2.83
6740 7225 8.901748 CGTAGATTCGTTCATTCAAAATGTTTT 58.098 29.630 0.04 0.00 0.00 2.43
6757 7242 8.601243 AAATGTTTTATCTCTTAAATCGTGCG 57.399 30.769 0.00 0.00 30.03 5.34
6758 7243 6.715344 TGTTTTATCTCTTAAATCGTGCGT 57.285 33.333 0.00 0.00 30.03 5.24
6759 7244 6.758149 TGTTTTATCTCTTAAATCGTGCGTC 58.242 36.000 0.00 0.00 30.03 5.19
6760 7245 5.961395 TTTATCTCTTAAATCGTGCGTCC 57.039 39.130 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.611757 CAAAAAGGTGTCAATATGATCGATACA 58.388 33.333 0.00 0.00 0.00 2.29
68 72 2.583143 AGGGGTTTGAGTTGTGTTAGC 58.417 47.619 0.00 0.00 0.00 3.09
109 113 6.963796 AGTGTGTGATGAATTTGAGAACTTC 58.036 36.000 0.00 0.00 0.00 3.01
148 152 8.086851 AGGTGCTATGCAATTAAAAGTTTTTG 57.913 30.769 6.10 0.14 41.47 2.44
168 172 1.141657 TCTCATGCAGGGATAAGGTGC 59.858 52.381 0.00 0.00 37.73 5.01
178 182 5.047092 AGGTTTTTGGTTAATCTCATGCAGG 60.047 40.000 0.00 0.00 0.00 4.85
179 183 6.029346 AGGTTTTTGGTTAATCTCATGCAG 57.971 37.500 0.00 0.00 0.00 4.41
182 186 8.197439 GGGATAAGGTTTTTGGTTAATCTCATG 58.803 37.037 0.00 0.00 0.00 3.07
255 261 5.296748 GGCATTGTTTTTACTTGACCACAT 58.703 37.500 0.00 0.00 0.00 3.21
261 267 2.362397 TGCCGGCATTGTTTTTACTTGA 59.638 40.909 29.03 0.00 0.00 3.02
265 271 4.364415 TCTATGCCGGCATTGTTTTTAC 57.636 40.909 44.18 3.47 37.82 2.01
266 272 5.164954 GTTTCTATGCCGGCATTGTTTTTA 58.835 37.500 44.18 24.78 37.82 1.52
272 278 0.385390 GGGTTTCTATGCCGGCATTG 59.615 55.000 44.18 39.55 37.82 2.82
278 284 4.336889 TGAGATTAGGGTTTCTATGCCG 57.663 45.455 0.00 0.00 0.00 5.69
280 286 6.529220 AGTGATGAGATTAGGGTTTCTATGC 58.471 40.000 0.00 0.00 0.00 3.14
351 371 2.179018 CACCTTGCCGCAAATCCG 59.821 61.111 7.33 0.00 0.00 4.18
352 372 2.125952 GCACCTTGCCGCAAATCC 60.126 61.111 7.33 0.00 37.42 3.01
353 373 2.504681 CGCACCTTGCCGCAAATC 60.505 61.111 7.33 0.00 41.12 2.17
354 374 2.981560 CTCGCACCTTGCCGCAAAT 61.982 57.895 7.33 0.00 41.12 2.32
355 375 3.659092 CTCGCACCTTGCCGCAAA 61.659 61.111 7.33 0.00 41.12 3.68
396 418 1.126488 ACAGTCATCTCCATCGCCAT 58.874 50.000 0.00 0.00 0.00 4.40
397 419 0.176449 CACAGTCATCTCCATCGCCA 59.824 55.000 0.00 0.00 0.00 5.69
400 422 1.284657 GTGCACAGTCATCTCCATCG 58.715 55.000 13.17 0.00 0.00 3.84
437 459 3.652274 TCGATGATCGAAGCATTATGCA 58.348 40.909 15.98 0.00 46.90 3.96
472 494 2.930777 AATCGAGGGAGACGGGGAGG 62.931 65.000 0.00 0.00 0.00 4.30
473 495 1.043673 AAATCGAGGGAGACGGGGAG 61.044 60.000 0.00 0.00 0.00 4.30
475 497 0.462047 CAAAATCGAGGGAGACGGGG 60.462 60.000 0.00 0.00 0.00 5.73
477 499 1.927895 CTCAAAATCGAGGGAGACGG 58.072 55.000 0.00 0.00 0.00 4.79
529 563 3.179830 CAGCTTGTAATTCGTAGCGACT 58.820 45.455 0.00 0.00 38.62 4.18
533 567 4.663636 AACACAGCTTGTAATTCGTAGC 57.336 40.909 2.60 0.00 37.51 3.58
536 570 4.597079 CACAAACACAGCTTGTAATTCGT 58.403 39.130 2.60 0.00 37.51 3.85
541 575 3.857549 TTGCACAAACACAGCTTGTAA 57.142 38.095 0.00 0.00 37.51 2.41
544 578 4.603231 ATTTTTGCACAAACACAGCTTG 57.397 36.364 0.00 0.00 0.00 4.01
549 583 7.959651 GTGTTGAAATATTTTTGCACAAACACA 59.040 29.630 17.38 5.83 0.00 3.72
585 620 5.409643 AACATATGCTGACAGCGAAATAC 57.590 39.130 22.00 0.00 46.26 1.89
593 628 5.277202 GCAGTCATGTAACATATGCTGACAG 60.277 44.000 17.66 0.00 36.37 3.51
602 637 8.537016 AGTTAAGGTTAGCAGTCATGTAACATA 58.463 33.333 5.76 0.00 30.75 2.29
615 650 5.944135 AGGTGGTTTAAGTTAAGGTTAGCA 58.056 37.500 0.00 0.00 0.00 3.49
616 651 5.999600 TGAGGTGGTTTAAGTTAAGGTTAGC 59.000 40.000 0.00 0.00 0.00 3.09
618 653 5.999600 GCTGAGGTGGTTTAAGTTAAGGTTA 59.000 40.000 0.00 0.00 0.00 2.85
619 654 4.825634 GCTGAGGTGGTTTAAGTTAAGGTT 59.174 41.667 0.00 0.00 0.00 3.50
621 656 3.435671 CGCTGAGGTGGTTTAAGTTAAGG 59.564 47.826 0.00 0.00 0.00 2.69
622 657 4.151867 GTCGCTGAGGTGGTTTAAGTTAAG 59.848 45.833 0.00 0.00 0.00 1.85
642 743 4.935205 TCTCAATGTACCTGAAAATGGTCG 59.065 41.667 0.00 0.00 38.88 4.79
652 753 6.456795 TGTCACTAGATCTCAATGTACCTG 57.543 41.667 0.00 0.00 0.00 4.00
684 785 8.730680 GTCATTGTATTCTGTACTTGTGGAATT 58.269 33.333 0.00 0.00 31.89 2.17
725 826 2.886523 TGAGTGGTGCCATTGAAGAAAG 59.113 45.455 0.00 0.00 0.00 2.62
756 866 0.532573 CGAGCTGAGCTGGTTTCCTA 59.467 55.000 13.71 0.00 39.88 2.94
784 894 2.374184 CTCTATATCTCTCTGGGCGGG 58.626 57.143 0.00 0.00 0.00 6.13
787 897 6.619329 AAAATCCTCTATATCTCTCTGGGC 57.381 41.667 0.00 0.00 0.00 5.36
812 922 4.437682 TCTCTCTTGGGCTTCTCAAAAA 57.562 40.909 0.00 0.00 0.00 1.94
813 923 4.647564 ATCTCTCTTGGGCTTCTCAAAA 57.352 40.909 0.00 0.00 0.00 2.44
814 924 5.026121 TCTATCTCTCTTGGGCTTCTCAAA 58.974 41.667 0.00 0.00 0.00 2.69
815 925 4.614475 TCTATCTCTCTTGGGCTTCTCAA 58.386 43.478 0.00 0.00 0.00 3.02
816 926 4.256983 TCTATCTCTCTTGGGCTTCTCA 57.743 45.455 0.00 0.00 0.00 3.27
817 927 4.892934 TCTTCTATCTCTCTTGGGCTTCTC 59.107 45.833 0.00 0.00 0.00 2.87
818 928 4.877773 TCTTCTATCTCTCTTGGGCTTCT 58.122 43.478 0.00 0.00 0.00 2.85
819 929 5.070313 ACATCTTCTATCTCTCTTGGGCTTC 59.930 44.000 0.00 0.00 0.00 3.86
820 930 4.968080 ACATCTTCTATCTCTCTTGGGCTT 59.032 41.667 0.00 0.00 0.00 4.35
821 931 4.344679 CACATCTTCTATCTCTCTTGGGCT 59.655 45.833 0.00 0.00 0.00 5.19
822 932 4.343526 TCACATCTTCTATCTCTCTTGGGC 59.656 45.833 0.00 0.00 0.00 5.36
823 933 5.598005 ACTCACATCTTCTATCTCTCTTGGG 59.402 44.000 0.00 0.00 0.00 4.12
826 936 8.815565 TTGTACTCACATCTTCTATCTCTCTT 57.184 34.615 0.00 0.00 33.76 2.85
872 982 9.516546 TCAAGAATAGTACTAGAAGTGTCTCAA 57.483 33.333 8.85 0.00 35.12 3.02
873 983 9.516546 TTCAAGAATAGTACTAGAAGTGTCTCA 57.483 33.333 8.85 0.00 35.12 3.27
874 984 9.997482 CTTCAAGAATAGTACTAGAAGTGTCTC 57.003 37.037 15.66 2.33 35.12 3.36
875 985 8.962679 CCTTCAAGAATAGTACTAGAAGTGTCT 58.037 37.037 19.54 9.23 37.95 3.41
876 986 8.741841 ACCTTCAAGAATAGTACTAGAAGTGTC 58.258 37.037 19.54 7.68 31.55 3.67
877 987 8.653036 ACCTTCAAGAATAGTACTAGAAGTGT 57.347 34.615 19.54 15.69 31.55 3.55
879 989 9.978336 AGTACCTTCAAGAATAGTACTAGAAGT 57.022 33.333 19.54 13.44 37.94 3.01
881 991 9.406113 GGAGTACCTTCAAGAATAGTACTAGAA 57.594 37.037 18.20 5.23 38.90 2.10
882 992 8.780003 AGGAGTACCTTCAAGAATAGTACTAGA 58.220 37.037 18.20 0.00 45.36 2.43
883 993 8.983702 AGGAGTACCTTCAAGAATAGTACTAG 57.016 38.462 18.20 0.00 45.36 2.57
910 1020 8.531982 GGGCCTTCAAGAATTAGTATTTTTCTT 58.468 33.333 0.84 0.00 39.61 2.52
911 1021 7.673926 TGGGCCTTCAAGAATTAGTATTTTTCT 59.326 33.333 4.53 0.00 0.00 2.52
912 1022 7.836842 TGGGCCTTCAAGAATTAGTATTTTTC 58.163 34.615 4.53 0.00 0.00 2.29
913 1023 7.454694 ACTGGGCCTTCAAGAATTAGTATTTTT 59.545 33.333 4.53 0.00 0.00 1.94
914 1024 6.954102 ACTGGGCCTTCAAGAATTAGTATTTT 59.046 34.615 4.53 0.00 0.00 1.82
915 1025 6.494059 ACTGGGCCTTCAAGAATTAGTATTT 58.506 36.000 4.53 0.00 0.00 1.40
916 1026 6.079712 ACTGGGCCTTCAAGAATTAGTATT 57.920 37.500 4.53 0.00 0.00 1.89
917 1027 5.398012 GGACTGGGCCTTCAAGAATTAGTAT 60.398 44.000 4.53 0.00 0.00 2.12
1002 1112 2.663196 CTGTCTCGGTGGTTCCCC 59.337 66.667 0.00 0.00 0.00 4.81
1123 1233 1.368950 CCGCCATCATCATCGGAGT 59.631 57.895 0.00 0.00 44.23 3.85
1263 1373 0.385751 CGACATAGCTCGTGGGATGT 59.614 55.000 0.00 0.00 35.26 3.06
1371 1499 7.996644 TCAAAAATAGGATAGATACCACCAACC 59.003 37.037 0.00 0.00 0.00 3.77
1373 1501 8.778059 ACTCAAAAATAGGATAGATACCACCAA 58.222 33.333 0.00 0.00 0.00 3.67
1375 1503 9.628500 AAACTCAAAAATAGGATAGATACCACC 57.372 33.333 0.00 0.00 0.00 4.61
1395 1524 7.027874 ACCCTAAACCTATCATCAAAACTCA 57.972 36.000 0.00 0.00 0.00 3.41
1402 1531 4.291792 TCGGAACCCTAAACCTATCATCA 58.708 43.478 0.00 0.00 0.00 3.07
1403 1532 4.950205 TCGGAACCCTAAACCTATCATC 57.050 45.455 0.00 0.00 0.00 2.92
1404 1533 4.720273 ACTTCGGAACCCTAAACCTATCAT 59.280 41.667 0.00 0.00 0.00 2.45
1448 1577 3.792401 CCACACGGAATCATAGCTACAA 58.208 45.455 0.00 0.00 0.00 2.41
1508 1637 6.264518 TCAGAATATCAACCATGTCGCTACTA 59.735 38.462 0.00 0.00 0.00 1.82
1616 1746 8.641498 ATGATGTTCACTAAGAAATTGACCTT 57.359 30.769 0.00 0.00 38.13 3.50
1638 1768 8.514594 GGATGACAAAGTTCAACAAATCTATGA 58.485 33.333 0.00 0.00 0.00 2.15
1658 1788 9.765795 ACAAGCAACTTACTATTATAGGATGAC 57.234 33.333 4.15 0.00 0.00 3.06
1750 1883 5.946942 TTCTGAGCTATGAAGAATCCACT 57.053 39.130 0.00 0.00 0.00 4.00
1775 1908 5.121768 GCTTACGAAGAAACTAAGGCATCAA 59.878 40.000 0.00 0.00 0.00 2.57
1805 1938 1.489881 GGCTTGCTGCAAACAAACGG 61.490 55.000 16.74 3.94 45.15 4.44
1806 1939 0.805322 TGGCTTGCTGCAAACAAACG 60.805 50.000 16.74 4.67 45.15 3.60
1826 1959 5.499139 AACACAACATTCGACAGAATTGT 57.501 34.783 0.00 0.00 44.11 2.71
2106 2240 6.238211 CGAGTGCAAAAGGTAATCCTGAATAG 60.238 42.308 0.00 0.00 44.35 1.73
2209 2343 3.803186 ATGAATCCATAGCCTTCTGGG 57.197 47.619 0.00 0.00 38.36 4.45
2658 2792 9.662947 AACACCAAATAGTAGGTTACAGATAAC 57.337 33.333 0.00 0.00 40.12 1.89
3087 3221 8.682710 GTCCAAGTTACCAATAAATATCTGCAA 58.317 33.333 0.00 0.00 0.00 4.08
3119 3253 1.153939 CAGCTCCTCTTCCGTCACG 60.154 63.158 0.00 0.00 0.00 4.35
3353 3489 0.027455 ATCAAACACACGCACACACG 59.973 50.000 0.00 0.00 39.50 4.49
3375 3511 8.162878 TGGCAATGCAATCTAAAAATTGAAAA 57.837 26.923 7.79 0.00 38.64 2.29
3701 3837 7.677454 ATAGGCATATACACACATGACAATG 57.323 36.000 0.00 0.00 39.89 2.82
3743 3879 7.803659 CCAAGAGTCGAAATTTTAGAAGGAAAC 59.196 37.037 0.00 0.00 0.00 2.78
3831 3967 7.800380 ACGATTATCTTAGTGGTAAATACGTCG 59.200 37.037 0.00 0.00 0.00 5.12
4074 4210 4.269844 CACTGCACAACCCAAAATTAACAC 59.730 41.667 0.00 0.00 0.00 3.32
4098 4234 9.709495 AACATAAATTTTCTTTAGCATGCTCAA 57.291 25.926 26.57 19.16 0.00 3.02
4613 4753 9.851686 TGAAGTGAACTATATGGCTCATAAAAT 57.148 29.630 0.00 0.00 29.74 1.82
4706 4846 9.784376 TCCACACTTATATCCCTAAAGCTATAT 57.216 33.333 0.00 0.00 0.00 0.86
4815 4955 4.682778 ACTTGGCTTCACAACTACTGTA 57.317 40.909 0.00 0.00 36.10 2.74
4816 4956 3.560636 ACTTGGCTTCACAACTACTGT 57.439 42.857 0.00 0.00 39.56 3.55
4817 4957 5.057149 AGTAACTTGGCTTCACAACTACTG 58.943 41.667 0.00 0.00 29.45 2.74
4818 4958 5.291905 AGTAACTTGGCTTCACAACTACT 57.708 39.130 0.00 0.00 0.00 2.57
4819 4959 5.638234 CCTAGTAACTTGGCTTCACAACTAC 59.362 44.000 0.00 0.00 0.00 2.73
4908 5048 3.753815 TCCACAGAGCATGAAACATGAA 58.246 40.909 14.65 0.00 0.00 2.57
4909 5049 3.421919 TCCACAGAGCATGAAACATGA 57.578 42.857 14.65 0.00 0.00 3.07
4980 5120 7.226441 AGAACATGTTATCAGCTATATTGCCA 58.774 34.615 11.95 0.00 0.00 4.92
5161 5308 3.519510 TCCCTCAACCTGGAAGATTACAG 59.480 47.826 0.00 0.00 38.91 2.74
5162 5309 3.519510 CTCCCTCAACCTGGAAGATTACA 59.480 47.826 0.00 0.00 34.07 2.41
5163 5310 3.682999 GCTCCCTCAACCTGGAAGATTAC 60.683 52.174 0.00 0.00 34.07 1.89
5245 5392 3.873952 GTCAGGTAAGCTCATTGGATCAC 59.126 47.826 0.00 0.00 0.00 3.06
5363 5511 4.583907 TGTCAATTCACTCATTTTGCTCCA 59.416 37.500 0.00 0.00 0.00 3.86
5621 5777 6.561737 TCAGTTAGATATAAGAGGTCAGCG 57.438 41.667 0.00 0.00 0.00 5.18
5632 5788 8.150945 GGAAGAAAGGTGCATCAGTTAGATATA 58.849 37.037 0.00 0.00 34.43 0.86
5633 5789 6.995091 GGAAGAAAGGTGCATCAGTTAGATAT 59.005 38.462 0.00 0.00 34.43 1.63
5828 5986 1.674962 CGTAGTTACTTCTCGGAGGGG 59.325 57.143 4.96 1.16 0.00 4.79
5831 5989 1.674962 CCCCGTAGTTACTTCTCGGAG 59.325 57.143 18.83 0.00 43.22 4.63
5832 5990 1.004745 ACCCCGTAGTTACTTCTCGGA 59.995 52.381 18.83 0.00 43.22 4.55
5833 5991 1.467920 ACCCCGTAGTTACTTCTCGG 58.532 55.000 13.26 13.26 40.72 4.63
5834 5992 2.489329 TCAACCCCGTAGTTACTTCTCG 59.511 50.000 0.00 0.00 0.00 4.04
5848 6006 1.748591 GCCTGTCATCATCTCAACCCC 60.749 57.143 0.00 0.00 0.00 4.95
5859 6017 2.007360 CTGTCTGTCAGCCTGTCATC 57.993 55.000 0.00 0.00 37.36 2.92
5926 6084 4.957327 AGGACAGGACTAACAATAGAGGTC 59.043 45.833 0.00 0.00 33.15 3.85
5933 6091 4.724279 AAACCAGGACAGGACTAACAAT 57.276 40.909 0.00 0.00 0.00 2.71
5973 6131 3.341823 CAGAAACTTGGTAGCAGCATCT 58.658 45.455 0.00 0.00 0.00 2.90
6012 6170 3.006110 AGACGGTCAGGATACGAAAAACA 59.994 43.478 11.27 0.00 46.39 2.83
6019 6179 1.909376 CACAAGACGGTCAGGATACG 58.091 55.000 11.27 0.00 46.39 3.06
6031 6191 1.394917 CTAATGTCTGCGGCACAAGAC 59.605 52.381 12.41 12.41 0.00 3.01
6041 6201 4.320494 CGGCAATATTTCCCTAATGTCTGC 60.320 45.833 0.00 0.00 0.00 4.26
6046 6206 3.057315 CAGGCGGCAATATTTCCCTAATG 60.057 47.826 13.08 0.00 0.00 1.90
6048 6208 2.582052 CAGGCGGCAATATTTCCCTAA 58.418 47.619 13.08 0.00 0.00 2.69
6049 6209 1.202879 CCAGGCGGCAATATTTCCCTA 60.203 52.381 13.08 0.00 0.00 3.53
6050 6210 0.468029 CCAGGCGGCAATATTTCCCT 60.468 55.000 13.08 0.00 0.00 4.20
6072 6266 5.631026 CAAAACAACCTCAGATTATGACCG 58.369 41.667 0.00 0.00 33.22 4.79
6084 6278 0.032540 CCAGGCAGCAAAACAACCTC 59.967 55.000 0.00 0.00 0.00 3.85
6124 6318 1.804748 GGTTACCAAACGCCTCTGAAG 59.195 52.381 0.00 0.00 36.39 3.02
6125 6319 1.141254 TGGTTACCAAACGCCTCTGAA 59.859 47.619 0.00 0.00 36.39 3.02
6126 6320 0.759959 TGGTTACCAAACGCCTCTGA 59.240 50.000 0.00 0.00 36.39 3.27
6127 6321 1.600023 TTGGTTACCAAACGCCTCTG 58.400 50.000 15.17 0.00 40.92 3.35
6128 6322 2.351706 TTTGGTTACCAAACGCCTCT 57.648 45.000 23.91 0.00 46.92 3.69
6215 6696 1.159285 ACATGATGCACAGAACCACG 58.841 50.000 0.00 0.00 0.00 4.94
6248 6733 1.592223 GAGAAGTGGGGAGACACCG 59.408 63.158 0.00 0.00 42.28 4.94
6267 6752 1.865788 CGGCAACCACCCAGACATTG 61.866 60.000 0.00 0.00 0.00 2.82
6285 6770 3.901877 CGCACATAATTACATGATGCACG 59.098 43.478 0.00 0.00 34.98 5.34
6318 6803 2.157863 GCTCTTACTTGCGTTTCAGGAC 59.842 50.000 0.00 0.00 0.00 3.85
6329 6814 2.559440 GGCTGGAGATGCTCTTACTTG 58.441 52.381 0.00 0.00 0.00 3.16
6330 6815 1.137872 CGGCTGGAGATGCTCTTACTT 59.862 52.381 0.00 0.00 0.00 2.24
6337 6822 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
6347 6832 4.038080 CTTGGGGTTGCGAACGGC 62.038 66.667 0.00 0.00 43.96 5.68
6348 6833 1.894756 TTCTTGGGGTTGCGAACGG 60.895 57.895 0.00 0.00 0.00 4.44
6349 6834 1.281656 GTTCTTGGGGTTGCGAACG 59.718 57.895 0.00 0.00 0.00 3.95
6350 6835 0.030235 GTGTTCTTGGGGTTGCGAAC 59.970 55.000 0.00 0.00 37.02 3.95
6351 6836 1.104577 GGTGTTCTTGGGGTTGCGAA 61.105 55.000 0.00 0.00 0.00 4.70
6352 6837 1.527380 GGTGTTCTTGGGGTTGCGA 60.527 57.895 0.00 0.00 0.00 5.10
6353 6838 1.826054 TGGTGTTCTTGGGGTTGCG 60.826 57.895 0.00 0.00 0.00 4.85
6354 6839 1.739667 GTGGTGTTCTTGGGGTTGC 59.260 57.895 0.00 0.00 0.00 4.17
6355 6840 1.452145 CGGTGGTGTTCTTGGGGTTG 61.452 60.000 0.00 0.00 0.00 3.77
6356 6841 1.152839 CGGTGGTGTTCTTGGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
6357 6842 1.637724 TTCGGTGGTGTTCTTGGGGT 61.638 55.000 0.00 0.00 0.00 4.95
6358 6843 1.149627 TTCGGTGGTGTTCTTGGGG 59.850 57.895 0.00 0.00 0.00 4.96
6359 6844 1.170290 GGTTCGGTGGTGTTCTTGGG 61.170 60.000 0.00 0.00 0.00 4.12
6360 6845 0.464735 TGGTTCGGTGGTGTTCTTGG 60.465 55.000 0.00 0.00 0.00 3.61
6361 6846 1.384525 TTGGTTCGGTGGTGTTCTTG 58.615 50.000 0.00 0.00 0.00 3.02
6362 6847 2.131776 TTTGGTTCGGTGGTGTTCTT 57.868 45.000 0.00 0.00 0.00 2.52
6363 6848 2.131776 TTTTGGTTCGGTGGTGTTCT 57.868 45.000 0.00 0.00 0.00 3.01
6364 6849 2.943449 TTTTTGGTTCGGTGGTGTTC 57.057 45.000 0.00 0.00 0.00 3.18
6380 6865 3.699538 GACCCTCAAGACACCAACTTTTT 59.300 43.478 0.00 0.00 0.00 1.94
6381 6866 3.288092 GACCCTCAAGACACCAACTTTT 58.712 45.455 0.00 0.00 0.00 2.27
6382 6867 2.241176 TGACCCTCAAGACACCAACTTT 59.759 45.455 0.00 0.00 0.00 2.66
6383 6868 1.843851 TGACCCTCAAGACACCAACTT 59.156 47.619 0.00 0.00 0.00 2.66
6384 6869 1.507140 TGACCCTCAAGACACCAACT 58.493 50.000 0.00 0.00 0.00 3.16
6385 6870 2.568623 ATGACCCTCAAGACACCAAC 57.431 50.000 0.00 0.00 0.00 3.77
6386 6871 2.549992 CGAATGACCCTCAAGACACCAA 60.550 50.000 0.00 0.00 0.00 3.67
6387 6872 1.001974 CGAATGACCCTCAAGACACCA 59.998 52.381 0.00 0.00 0.00 4.17
6388 6873 1.676014 CCGAATGACCCTCAAGACACC 60.676 57.143 0.00 0.00 0.00 4.16
6389 6874 1.726853 CCGAATGACCCTCAAGACAC 58.273 55.000 0.00 0.00 0.00 3.67
6390 6875 0.036388 GCCGAATGACCCTCAAGACA 60.036 55.000 0.00 0.00 0.00 3.41
6391 6876 1.084370 CGCCGAATGACCCTCAAGAC 61.084 60.000 0.00 0.00 0.00 3.01
6392 6877 1.218047 CGCCGAATGACCCTCAAGA 59.782 57.895 0.00 0.00 0.00 3.02
6393 6878 0.391130 TTCGCCGAATGACCCTCAAG 60.391 55.000 0.00 0.00 0.00 3.02
6394 6879 0.035598 TTTCGCCGAATGACCCTCAA 59.964 50.000 0.00 0.00 0.00 3.02
6395 6880 0.251916 ATTTCGCCGAATGACCCTCA 59.748 50.000 0.00 0.00 0.00 3.86
6396 6881 2.234300 TATTTCGCCGAATGACCCTC 57.766 50.000 0.00 0.00 0.00 4.30
6397 6882 2.702592 TTATTTCGCCGAATGACCCT 57.297 45.000 0.00 0.00 0.00 4.34
6398 6883 2.940410 TCTTTATTTCGCCGAATGACCC 59.060 45.455 0.00 0.00 0.00 4.46
6399 6884 4.331717 TCTTCTTTATTTCGCCGAATGACC 59.668 41.667 0.00 0.00 0.00 4.02
6400 6885 5.163893 TGTCTTCTTTATTTCGCCGAATGAC 60.164 40.000 0.00 0.00 0.00 3.06
6401 6886 4.932799 TGTCTTCTTTATTTCGCCGAATGA 59.067 37.500 0.00 0.00 0.00 2.57
6402 6887 5.216566 TGTCTTCTTTATTTCGCCGAATG 57.783 39.130 0.00 0.00 0.00 2.67
6403 6888 5.817816 AGATGTCTTCTTTATTTCGCCGAAT 59.182 36.000 0.00 0.00 0.00 3.34
6404 6889 5.175859 AGATGTCTTCTTTATTTCGCCGAA 58.824 37.500 0.00 0.00 0.00 4.30
6405 6890 4.755411 AGATGTCTTCTTTATTTCGCCGA 58.245 39.130 0.00 0.00 0.00 5.54
6406 6891 5.470845 AAGATGTCTTCTTTATTTCGCCG 57.529 39.130 0.00 0.00 42.15 6.46
6419 6904 3.054802 GGATGTGACTGGGAAGATGTCTT 60.055 47.826 0.00 0.00 39.23 3.01
6420 6905 2.503356 GGATGTGACTGGGAAGATGTCT 59.497 50.000 0.00 0.00 0.00 3.41
6421 6906 2.420687 GGGATGTGACTGGGAAGATGTC 60.421 54.545 0.00 0.00 0.00 3.06
6422 6907 1.561542 GGGATGTGACTGGGAAGATGT 59.438 52.381 0.00 0.00 0.00 3.06
6423 6908 1.561076 TGGGATGTGACTGGGAAGATG 59.439 52.381 0.00 0.00 0.00 2.90
6424 6909 1.561542 GTGGGATGTGACTGGGAAGAT 59.438 52.381 0.00 0.00 0.00 2.40
6425 6910 0.984230 GTGGGATGTGACTGGGAAGA 59.016 55.000 0.00 0.00 0.00 2.87
6426 6911 0.035056 GGTGGGATGTGACTGGGAAG 60.035 60.000 0.00 0.00 0.00 3.46
6427 6912 1.497309 GGGTGGGATGTGACTGGGAA 61.497 60.000 0.00 0.00 0.00 3.97
6428 6913 1.923395 GGGTGGGATGTGACTGGGA 60.923 63.158 0.00 0.00 0.00 4.37
6429 6914 2.677228 GGGTGGGATGTGACTGGG 59.323 66.667 0.00 0.00 0.00 4.45
6430 6915 1.788518 TTGGGGTGGGATGTGACTGG 61.789 60.000 0.00 0.00 0.00 4.00
6431 6916 0.322816 CTTGGGGTGGGATGTGACTG 60.323 60.000 0.00 0.00 0.00 3.51
6432 6917 2.078452 CTTGGGGTGGGATGTGACT 58.922 57.895 0.00 0.00 0.00 3.41
6433 6918 1.678970 GCTTGGGGTGGGATGTGAC 60.679 63.158 0.00 0.00 0.00 3.67
6434 6919 1.724148 TTGCTTGGGGTGGGATGTGA 61.724 55.000 0.00 0.00 0.00 3.58
6435 6920 0.831288 TTTGCTTGGGGTGGGATGTG 60.831 55.000 0.00 0.00 0.00 3.21
6436 6921 0.105246 TTTTGCTTGGGGTGGGATGT 60.105 50.000 0.00 0.00 0.00 3.06
6437 6922 0.609662 CTTTTGCTTGGGGTGGGATG 59.390 55.000 0.00 0.00 0.00 3.51
6438 6923 0.190815 ACTTTTGCTTGGGGTGGGAT 59.809 50.000 0.00 0.00 0.00 3.85
6439 6924 0.031616 AACTTTTGCTTGGGGTGGGA 60.032 50.000 0.00 0.00 0.00 4.37
6440 6925 0.836606 AAACTTTTGCTTGGGGTGGG 59.163 50.000 0.00 0.00 0.00 4.61
6441 6926 1.209261 ACAAACTTTTGCTTGGGGTGG 59.791 47.619 1.49 0.00 41.79 4.61
6442 6927 2.093764 TCACAAACTTTTGCTTGGGGTG 60.094 45.455 1.49 0.00 41.79 4.61
6443 6928 2.168313 CTCACAAACTTTTGCTTGGGGT 59.832 45.455 1.49 0.00 41.79 4.95
6444 6929 2.483538 CCTCACAAACTTTTGCTTGGGG 60.484 50.000 1.49 0.00 41.79 4.96
6445 6930 2.430332 TCCTCACAAACTTTTGCTTGGG 59.570 45.455 1.49 0.70 41.79 4.12
6446 6931 3.381272 TCTCCTCACAAACTTTTGCTTGG 59.619 43.478 1.49 2.24 41.79 3.61
6447 6932 4.637483 TCTCCTCACAAACTTTTGCTTG 57.363 40.909 1.49 0.00 41.79 4.01
6448 6933 5.360714 TCATTCTCCTCACAAACTTTTGCTT 59.639 36.000 1.49 0.00 41.79 3.91
6449 6934 4.889409 TCATTCTCCTCACAAACTTTTGCT 59.111 37.500 1.49 0.00 41.79 3.91
6450 6935 5.186996 TCATTCTCCTCACAAACTTTTGC 57.813 39.130 1.49 0.00 41.79 3.68
6451 6936 9.403110 CTTAATCATTCTCCTCACAAACTTTTG 57.597 33.333 0.00 0.00 43.62 2.44
6452 6937 9.136323 ACTTAATCATTCTCCTCACAAACTTTT 57.864 29.630 0.00 0.00 0.00 2.27
6453 6938 8.571336 CACTTAATCATTCTCCTCACAAACTTT 58.429 33.333 0.00 0.00 0.00 2.66
6454 6939 7.175641 CCACTTAATCATTCTCCTCACAAACTT 59.824 37.037 0.00 0.00 0.00 2.66
6455 6940 6.656693 CCACTTAATCATTCTCCTCACAAACT 59.343 38.462 0.00 0.00 0.00 2.66
6456 6941 6.431234 ACCACTTAATCATTCTCCTCACAAAC 59.569 38.462 0.00 0.00 0.00 2.93
6457 6942 6.542821 ACCACTTAATCATTCTCCTCACAAA 58.457 36.000 0.00 0.00 0.00 2.83
6458 6943 6.126863 ACCACTTAATCATTCTCCTCACAA 57.873 37.500 0.00 0.00 0.00 3.33
6459 6944 5.248248 TGACCACTTAATCATTCTCCTCACA 59.752 40.000 0.00 0.00 0.00 3.58
6460 6945 5.734720 TGACCACTTAATCATTCTCCTCAC 58.265 41.667 0.00 0.00 0.00 3.51
6461 6946 6.373005 TTGACCACTTAATCATTCTCCTCA 57.627 37.500 0.00 0.00 0.00 3.86
6462 6947 7.106239 TCTTTGACCACTTAATCATTCTCCTC 58.894 38.462 0.00 0.00 0.00 3.71
6463 6948 7.020827 TCTTTGACCACTTAATCATTCTCCT 57.979 36.000 0.00 0.00 0.00 3.69
6464 6949 7.687941 TTCTTTGACCACTTAATCATTCTCC 57.312 36.000 0.00 0.00 0.00 3.71
6465 6950 9.617975 CTTTTCTTTGACCACTTAATCATTCTC 57.382 33.333 0.00 0.00 0.00 2.87
6466 6951 8.579863 CCTTTTCTTTGACCACTTAATCATTCT 58.420 33.333 0.00 0.00 0.00 2.40
6467 6952 8.576442 TCCTTTTCTTTGACCACTTAATCATTC 58.424 33.333 0.00 0.00 0.00 2.67
6468 6953 8.360390 GTCCTTTTCTTTGACCACTTAATCATT 58.640 33.333 0.00 0.00 0.00 2.57
6469 6954 7.505585 TGTCCTTTTCTTTGACCACTTAATCAT 59.494 33.333 0.00 0.00 0.00 2.45
6470 6955 6.831353 TGTCCTTTTCTTTGACCACTTAATCA 59.169 34.615 0.00 0.00 0.00 2.57
6471 6956 7.272037 TGTCCTTTTCTTTGACCACTTAATC 57.728 36.000 0.00 0.00 0.00 1.75
6472 6957 7.287696 ACATGTCCTTTTCTTTGACCACTTAAT 59.712 33.333 0.00 0.00 0.00 1.40
6473 6958 6.605594 ACATGTCCTTTTCTTTGACCACTTAA 59.394 34.615 0.00 0.00 0.00 1.85
6474 6959 6.039270 CACATGTCCTTTTCTTTGACCACTTA 59.961 38.462 0.00 0.00 0.00 2.24
6475 6960 4.956075 ACATGTCCTTTTCTTTGACCACTT 59.044 37.500 0.00 0.00 0.00 3.16
6476 6961 4.339247 CACATGTCCTTTTCTTTGACCACT 59.661 41.667 0.00 0.00 0.00 4.00
6477 6962 4.499696 CCACATGTCCTTTTCTTTGACCAC 60.500 45.833 0.00 0.00 0.00 4.16
6478 6963 3.636300 CCACATGTCCTTTTCTTTGACCA 59.364 43.478 0.00 0.00 0.00 4.02
6479 6964 3.636764 ACCACATGTCCTTTTCTTTGACC 59.363 43.478 0.00 0.00 0.00 4.02
6480 6965 4.338118 TCACCACATGTCCTTTTCTTTGAC 59.662 41.667 0.00 0.00 0.00 3.18
6481 6966 4.531854 TCACCACATGTCCTTTTCTTTGA 58.468 39.130 0.00 0.00 0.00 2.69
6482 6967 4.580167 TCTCACCACATGTCCTTTTCTTTG 59.420 41.667 0.00 0.00 0.00 2.77
6483 6968 4.580580 GTCTCACCACATGTCCTTTTCTTT 59.419 41.667 0.00 0.00 0.00 2.52
6484 6969 4.137543 GTCTCACCACATGTCCTTTTCTT 58.862 43.478 0.00 0.00 0.00 2.52
6485 6970 3.744660 GTCTCACCACATGTCCTTTTCT 58.255 45.455 0.00 0.00 0.00 2.52
6486 6971 2.480419 CGTCTCACCACATGTCCTTTTC 59.520 50.000 0.00 0.00 0.00 2.29
6487 6972 2.104111 TCGTCTCACCACATGTCCTTTT 59.896 45.455 0.00 0.00 0.00 2.27
6488 6973 1.691976 TCGTCTCACCACATGTCCTTT 59.308 47.619 0.00 0.00 0.00 3.11
6489 6974 1.338107 TCGTCTCACCACATGTCCTT 58.662 50.000 0.00 0.00 0.00 3.36
6490 6975 1.561643 ATCGTCTCACCACATGTCCT 58.438 50.000 0.00 0.00 0.00 3.85
6491 6976 2.271800 GAATCGTCTCACCACATGTCC 58.728 52.381 0.00 0.00 0.00 4.02
6492 6977 1.920574 CGAATCGTCTCACCACATGTC 59.079 52.381 0.00 0.00 0.00 3.06
6493 6978 1.996292 CGAATCGTCTCACCACATGT 58.004 50.000 0.00 0.00 0.00 3.21
6494 6979 0.647410 GCGAATCGTCTCACCACATG 59.353 55.000 4.07 0.00 0.00 3.21
6495 6980 0.460284 GGCGAATCGTCTCACCACAT 60.460 55.000 4.07 0.00 0.00 3.21
6496 6981 1.080093 GGCGAATCGTCTCACCACA 60.080 57.895 4.07 0.00 0.00 4.17
6497 6982 2.158959 CGGCGAATCGTCTCACCAC 61.159 63.158 5.52 0.00 0.00 4.16
6498 6983 1.868987 TTCGGCGAATCGTCTCACCA 61.869 55.000 19.83 0.00 0.00 4.17
6499 6984 0.734942 TTTCGGCGAATCGTCTCACC 60.735 55.000 24.33 0.00 0.00 4.02
6500 6985 1.065358 TTTTCGGCGAATCGTCTCAC 58.935 50.000 24.33 0.00 0.00 3.51
6501 6986 2.004583 ATTTTCGGCGAATCGTCTCA 57.995 45.000 24.33 3.16 0.00 3.27
6502 6987 3.343129 GAAATTTTCGGCGAATCGTCTC 58.657 45.455 24.33 12.45 0.00 3.36
6503 6988 3.385079 GAAATTTTCGGCGAATCGTCT 57.615 42.857 24.33 7.29 0.00 4.18
6515 7000 2.878991 GCGCCGGCCGAAATTTTC 60.879 61.111 30.73 4.15 40.02 2.29
6533 7018 2.186826 CCTCAAAATAGCGCGGGGG 61.187 63.158 8.83 0.00 0.00 5.40
6534 7019 1.436983 GACCTCAAAATAGCGCGGGG 61.437 60.000 8.83 0.00 0.00 5.73
6535 7020 1.436983 GGACCTCAAAATAGCGCGGG 61.437 60.000 8.83 0.00 0.00 6.13
6536 7021 1.762222 CGGACCTCAAAATAGCGCGG 61.762 60.000 8.83 0.00 0.00 6.46
6537 7022 1.636340 CGGACCTCAAAATAGCGCG 59.364 57.895 0.00 0.00 0.00 6.86
6538 7023 1.436983 CCCGGACCTCAAAATAGCGC 61.437 60.000 0.73 0.00 0.00 5.92
6539 7024 0.814010 CCCCGGACCTCAAAATAGCG 60.814 60.000 0.73 0.00 0.00 4.26
6540 7025 0.465642 CCCCCGGACCTCAAAATAGC 60.466 60.000 0.73 0.00 0.00 2.97
6541 7026 3.800826 CCCCCGGACCTCAAAATAG 57.199 57.895 0.73 0.00 0.00 1.73
6560 7045 2.728015 CGAAAAACGGCCCAACGC 60.728 61.111 0.00 0.00 38.46 4.84
6569 7054 1.758371 CGCTTTTCGCCGAAAAACG 59.242 52.632 26.68 26.68 41.93 3.60
6588 7073 0.387622 TCAGTTTTAGACGCGGACGG 60.388 55.000 12.47 0.11 46.04 4.79
6590 7075 0.714439 GCTCAGTTTTAGACGCGGAC 59.286 55.000 12.47 3.93 0.00 4.79
6591 7076 0.389426 GGCTCAGTTTTAGACGCGGA 60.389 55.000 12.47 0.00 0.00 5.54
6592 7077 0.389948 AGGCTCAGTTTTAGACGCGG 60.390 55.000 12.47 0.00 0.00 6.46
6593 7078 2.273370 TAGGCTCAGTTTTAGACGCG 57.727 50.000 3.53 3.53 0.00 6.01
6594 7079 5.352643 TTTTTAGGCTCAGTTTTAGACGC 57.647 39.130 0.00 0.00 0.00 5.19
6595 7080 5.928153 CCTTTTTAGGCTCAGTTTTAGACG 58.072 41.667 0.00 0.00 0.00 4.18
6609 7094 9.503427 CTTAATTAGTGATTTCGCCTTTTTAGG 57.497 33.333 0.00 0.00 0.00 2.69
6612 7097 9.626045 CTTCTTAATTAGTGATTTCGCCTTTTT 57.374 29.630 0.00 0.00 0.00 1.94
6613 7098 8.793592 ACTTCTTAATTAGTGATTTCGCCTTTT 58.206 29.630 0.00 0.00 0.00 2.27
6614 7099 8.336801 ACTTCTTAATTAGTGATTTCGCCTTT 57.663 30.769 0.00 0.00 0.00 3.11
6615 7100 7.923414 ACTTCTTAATTAGTGATTTCGCCTT 57.077 32.000 0.00 0.00 0.00 4.35
6616 7101 8.258708 AGTACTTCTTAATTAGTGATTTCGCCT 58.741 33.333 0.00 0.00 0.00 5.52
6617 7102 8.421673 AGTACTTCTTAATTAGTGATTTCGCC 57.578 34.615 0.00 0.00 0.00 5.54
6618 7103 8.541312 GGAGTACTTCTTAATTAGTGATTTCGC 58.459 37.037 0.00 0.00 0.00 4.70
6619 7104 9.804758 AGGAGTACTTCTTAATTAGTGATTTCG 57.195 33.333 0.00 0.00 0.00 3.46
6622 7107 9.384764 GCAAGGAGTACTTCTTAATTAGTGATT 57.615 33.333 16.29 0.00 37.29 2.57
6623 7108 7.707035 CGCAAGGAGTACTTCTTAATTAGTGAT 59.293 37.037 16.29 0.00 37.29 3.06
6624 7109 7.033791 CGCAAGGAGTACTTCTTAATTAGTGA 58.966 38.462 16.29 0.00 37.29 3.41
6625 7110 7.223058 CGCAAGGAGTACTTCTTAATTAGTG 57.777 40.000 16.29 6.71 37.29 2.74
6650 7135 7.262048 CAACCTAGAGAAGTTGGAGTAATCTC 58.738 42.308 0.00 0.00 39.73 2.75
6651 7136 6.351456 GCAACCTAGAGAAGTTGGAGTAATCT 60.351 42.308 10.40 0.00 42.87 2.40
6652 7137 5.813157 GCAACCTAGAGAAGTTGGAGTAATC 59.187 44.000 10.40 0.00 42.87 1.75
6653 7138 5.624738 CGCAACCTAGAGAAGTTGGAGTAAT 60.625 44.000 10.40 0.00 42.87 1.89
6654 7139 4.321750 CGCAACCTAGAGAAGTTGGAGTAA 60.322 45.833 10.40 0.00 42.87 2.24
6655 7140 3.192844 CGCAACCTAGAGAAGTTGGAGTA 59.807 47.826 10.40 0.00 42.87 2.59
6656 7141 2.028930 CGCAACCTAGAGAAGTTGGAGT 60.029 50.000 10.40 0.00 42.87 3.85
6657 7142 2.231478 TCGCAACCTAGAGAAGTTGGAG 59.769 50.000 10.40 0.00 42.87 3.86
6658 7143 2.029290 GTCGCAACCTAGAGAAGTTGGA 60.029 50.000 10.40 4.95 42.87 3.53
6659 7144 2.288825 TGTCGCAACCTAGAGAAGTTGG 60.289 50.000 10.40 3.19 42.87 3.77
6660 7145 3.026630 TGTCGCAACCTAGAGAAGTTG 57.973 47.619 5.51 5.51 44.93 3.16
6661 7146 3.069729 ACTTGTCGCAACCTAGAGAAGTT 59.930 43.478 2.75 0.00 44.94 2.66
6662 7147 2.628657 ACTTGTCGCAACCTAGAGAAGT 59.371 45.455 2.75 2.75 43.29 3.01
6663 7148 2.989840 CACTTGTCGCAACCTAGAGAAG 59.010 50.000 0.00 1.60 41.65 2.85
6664 7149 2.288825 CCACTTGTCGCAACCTAGAGAA 60.289 50.000 0.00 0.00 0.00 2.87
6665 7150 1.272490 CCACTTGTCGCAACCTAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
6666 7151 1.714794 CCACTTGTCGCAACCTAGAG 58.285 55.000 0.00 0.00 0.00 2.43
6667 7152 0.320421 GCCACTTGTCGCAACCTAGA 60.320 55.000 0.00 0.00 0.00 2.43
6668 7153 1.626654 CGCCACTTGTCGCAACCTAG 61.627 60.000 0.00 0.00 0.00 3.02
6669 7154 1.666553 CGCCACTTGTCGCAACCTA 60.667 57.895 0.00 0.00 0.00 3.08
6670 7155 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
6676 7161 2.616330 ATGTTGGCGCCACTTGTCG 61.616 57.895 32.95 0.00 0.00 4.35
6677 7162 1.081242 CATGTTGGCGCCACTTGTC 60.081 57.895 32.95 17.23 0.00 3.18
6678 7163 2.563798 CCATGTTGGCGCCACTTGT 61.564 57.895 32.95 13.16 0.00 3.16
6679 7164 2.259204 CCATGTTGGCGCCACTTG 59.741 61.111 32.95 27.47 0.00 3.16
6680 7165 2.990967 CCCATGTTGGCGCCACTT 60.991 61.111 32.95 18.92 35.79 3.16
6681 7166 3.925630 CTCCCATGTTGGCGCCACT 62.926 63.158 32.95 14.70 35.79 4.00
6682 7167 3.443045 CTCCCATGTTGGCGCCAC 61.443 66.667 32.95 24.14 35.79 5.01
6683 7168 2.992817 AAACTCCCATGTTGGCGCCA 62.993 55.000 29.03 29.03 35.79 5.69
6684 7169 1.815817 AAAACTCCCATGTTGGCGCC 61.816 55.000 22.73 22.73 35.79 6.53
6685 7170 0.033366 AAAAACTCCCATGTTGGCGC 59.967 50.000 0.00 0.00 35.79 6.53
6686 7171 1.613437 AGAAAAACTCCCATGTTGGCG 59.387 47.619 0.00 0.00 35.79 5.69
6687 7172 3.751479 AAGAAAAACTCCCATGTTGGC 57.249 42.857 0.00 0.00 35.79 4.52
6709 7194 9.672086 ATTTTGAATGAACGAATCTACGAAAAA 57.328 25.926 0.00 0.00 37.03 1.94
6710 7195 9.112789 CATTTTGAATGAACGAATCTACGAAAA 57.887 29.630 0.00 0.00 37.03 2.29
6711 7196 8.286800 ACATTTTGAATGAACGAATCTACGAAA 58.713 29.630 7.59 0.00 37.03 3.46
6712 7197 7.802738 ACATTTTGAATGAACGAATCTACGAA 58.197 30.769 7.59 0.00 37.03 3.85
6713 7198 7.359262 ACATTTTGAATGAACGAATCTACGA 57.641 32.000 7.59 0.00 37.03 3.43
6714 7199 8.434870 AAACATTTTGAATGAACGAATCTACG 57.565 30.769 7.59 0.00 39.31 3.51
6731 7216 9.061610 CGCACGATTTAAGAGATAAAACATTTT 57.938 29.630 0.00 0.00 37.06 1.82
6732 7217 8.234546 ACGCACGATTTAAGAGATAAAACATTT 58.765 29.630 0.00 0.00 37.06 2.32
6733 7218 7.748847 ACGCACGATTTAAGAGATAAAACATT 58.251 30.769 0.00 0.00 37.06 2.71
6734 7219 7.303634 ACGCACGATTTAAGAGATAAAACAT 57.696 32.000 0.00 0.00 37.06 2.71
6735 7220 6.183360 GGACGCACGATTTAAGAGATAAAACA 60.183 38.462 0.00 0.00 37.06 2.83
6736 7221 6.183324 GGACGCACGATTTAAGAGATAAAAC 58.817 40.000 0.00 0.00 37.06 2.43
6737 7222 6.340537 GGACGCACGATTTAAGAGATAAAA 57.659 37.500 0.00 0.00 37.06 1.52
6738 7223 5.961395 GGACGCACGATTTAAGAGATAAA 57.039 39.130 0.00 0.00 37.86 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.