Multiple sequence alignment - TraesCS4B01G289300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G289300 chr4B 100.000 5630 0 0 1 5630 574228031 574222402 0.000000e+00 10397.0
1 TraesCS4B01G289300 chr4B 92.810 153 11 0 4721 4873 519346615 519346767 7.340000e-54 222.0
2 TraesCS4B01G289300 chr4B 100.000 38 0 0 1169 1206 574226830 574226793 2.810000e-08 71.3
3 TraesCS4B01G289300 chr4B 100.000 38 0 0 1202 1239 574226863 574226826 2.810000e-08 71.3
4 TraesCS4B01G289300 chr4D 92.686 3842 152 41 940 4720 459431288 459427515 0.000000e+00 5419.0
5 TraesCS4B01G289300 chr4D 90.201 847 71 9 110 948 318592558 318591716 0.000000e+00 1094.0
6 TraesCS4B01G289300 chr4D 83.422 754 94 21 4885 5630 459427520 459426790 0.000000e+00 671.0
7 TraesCS4B01G289300 chr4A 89.433 2858 201 45 940 3741 9377866 9380678 0.000000e+00 3511.0
8 TraesCS4B01G289300 chr4A 93.232 990 51 6 3736 4712 9380756 9381742 0.000000e+00 1443.0
9 TraesCS4B01G289300 chr4A 89.124 662 53 13 4887 5541 9381747 9382396 0.000000e+00 806.0
10 TraesCS4B01G289300 chr4A 89.941 169 15 2 4707 4873 696470456 696470624 3.420000e-52 217.0
11 TraesCS4B01G289300 chr4A 92.157 153 12 0 4721 4873 707007022 707006870 3.420000e-52 217.0
12 TraesCS4B01G289300 chr4A 93.506 77 4 1 1 76 735070036 735069960 4.610000e-21 113.0
13 TraesCS4B01G289300 chr4A 97.561 41 1 0 70 110 9377830 9377870 2.810000e-08 71.3
14 TraesCS4B01G289300 chr4A 100.000 38 0 0 1202 1239 9378110 9378147 2.810000e-08 71.3
15 TraesCS4B01G289300 chr5D 90.647 834 65 11 114 940 412714190 412713363 0.000000e+00 1096.0
16 TraesCS4B01G289300 chr5D 89.904 832 71 10 115 938 271482236 271481410 0.000000e+00 1059.0
17 TraesCS4B01G289300 chr5D 89.467 845 71 16 106 938 168013446 168014284 0.000000e+00 1051.0
18 TraesCS4B01G289300 chr7D 89.542 851 74 12 108 948 473577052 473577897 0.000000e+00 1064.0
19 TraesCS4B01G289300 chr7D 89.618 838 75 10 114 942 75957893 75958727 0.000000e+00 1055.0
20 TraesCS4B01G289300 chr7D 89.136 856 77 12 101 945 597702526 597703376 0.000000e+00 1051.0
21 TraesCS4B01G289300 chr7D 89.109 101 5 4 1 99 9830582 9830678 2.750000e-23 121.0
22 TraesCS4B01G289300 chr7D 91.765 85 4 3 2 83 11041062 11040978 1.280000e-21 115.0
23 TraesCS4B01G289300 chr2D 90.060 835 62 14 115 937 592373871 592373046 0.000000e+00 1062.0
24 TraesCS4B01G289300 chr2D 90.588 85 7 1 1 84 632759450 632759366 1.660000e-20 111.0
25 TraesCS4B01G289300 chr3D 89.265 857 75 14 109 955 156197004 156196155 0.000000e+00 1057.0
26 TraesCS4B01G289300 chr5B 93.878 147 9 0 4721 4867 544403822 544403676 7.340000e-54 222.0
27 TraesCS4B01G289300 chr5B 92.157 153 11 1 4721 4873 611710477 611710628 1.230000e-51 215.0
28 TraesCS4B01G289300 chr5B 97.222 72 1 1 1 71 702896831 702896902 2.750000e-23 121.0
29 TraesCS4B01G289300 chr5B 94.667 75 2 2 1 74 687336034 687336107 1.280000e-21 115.0
30 TraesCS4B01G289300 chr5B 92.500 80 4 2 1 79 400546106 400546028 4.610000e-21 113.0
31 TraesCS4B01G289300 chr3B 92.105 152 11 1 4721 4871 512934475 512934324 4.420000e-51 213.0
32 TraesCS4B01G289300 chr3B 74.370 238 46 13 5090 5322 265841176 265841403 2.790000e-13 87.9
33 TraesCS4B01G289300 chrUn 91.503 153 13 0 4721 4873 215700801 215700649 1.590000e-50 211.0
34 TraesCS4B01G289300 chrUn 91.503 153 13 0 4721 4873 215707115 215706963 1.590000e-50 211.0
35 TraesCS4B01G289300 chr6B 90.625 160 13 2 4716 4873 184472824 184472983 1.590000e-50 211.0
36 TraesCS4B01G289300 chr2B 91.566 83 4 2 1 83 449845950 449845871 1.660000e-20 111.0
37 TraesCS4B01G289300 chr1A 96.970 66 1 1 3 67 493297259 493297324 5.960000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G289300 chr4B 574222402 574228031 5629 True 3513.20 10397 100.000 1 5630 3 chr4B.!!$R1 5629
1 TraesCS4B01G289300 chr4D 459426790 459431288 4498 True 3045.00 5419 88.054 940 5630 2 chr4D.!!$R2 4690
2 TraesCS4B01G289300 chr4D 318591716 318592558 842 True 1094.00 1094 90.201 110 948 1 chr4D.!!$R1 838
3 TraesCS4B01G289300 chr4A 9377830 9382396 4566 False 1180.52 3511 93.870 70 5541 5 chr4A.!!$F2 5471
4 TraesCS4B01G289300 chr5D 412713363 412714190 827 True 1096.00 1096 90.647 114 940 1 chr5D.!!$R2 826
5 TraesCS4B01G289300 chr5D 271481410 271482236 826 True 1059.00 1059 89.904 115 938 1 chr5D.!!$R1 823
6 TraesCS4B01G289300 chr5D 168013446 168014284 838 False 1051.00 1051 89.467 106 938 1 chr5D.!!$F1 832
7 TraesCS4B01G289300 chr7D 473577052 473577897 845 False 1064.00 1064 89.542 108 948 1 chr7D.!!$F3 840
8 TraesCS4B01G289300 chr7D 75957893 75958727 834 False 1055.00 1055 89.618 114 942 1 chr7D.!!$F2 828
9 TraesCS4B01G289300 chr7D 597702526 597703376 850 False 1051.00 1051 89.136 101 945 1 chr7D.!!$F4 844
10 TraesCS4B01G289300 chr2D 592373046 592373871 825 True 1062.00 1062 90.060 115 937 1 chr2D.!!$R1 822
11 TraesCS4B01G289300 chr3D 156196155 156197004 849 True 1057.00 1057 89.265 109 955 1 chr3D.!!$R1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.321671 ATAACACACAGACTGCGCCT 59.678 50.0 4.18 0.00 0.00 5.52 F
1458 1499 0.876342 CGGAGGTTGCTCGGCTTATC 60.876 60.0 0.00 0.00 0.00 1.75 F
1576 1623 0.518636 TTGTCTTAGGTCCGACGTCG 59.481 55.0 30.33 30.33 39.44 5.12 F
2827 2887 0.037303 CATGCAAGTCCACTCTGGGT 59.963 55.0 0.00 0.00 38.32 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1534 0.032952 TTGAAGCGCTGTAACTCCGT 59.967 50.0 12.58 0.0 0.00 4.69 R
2477 2534 1.075425 CTTGAGCTGCTCCGACTTCG 61.075 60.0 25.61 3.8 39.44 3.79 R
3470 3549 2.054140 TTGGCGTCTGCGGTGAAAAC 62.054 55.0 0.00 0.0 44.10 2.43 R
4724 4906 0.037605 ACCTAGGAGCCAAAACGTCG 60.038 55.0 17.98 0.0 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.399245 GGATACCATAGTCTCTCTAACCATC 57.601 44.000 0.00 0.00 31.94 3.51
50 51 6.378848 GGATACCATAGTCTCTCTAACCATCC 59.621 46.154 0.00 0.00 31.94 3.51
51 52 5.144159 ACCATAGTCTCTCTAACCATCCA 57.856 43.478 0.00 0.00 31.94 3.41
52 53 5.529289 ACCATAGTCTCTCTAACCATCCAA 58.471 41.667 0.00 0.00 31.94 3.53
53 54 5.364157 ACCATAGTCTCTCTAACCATCCAAC 59.636 44.000 0.00 0.00 31.94 3.77
54 55 5.221541 CCATAGTCTCTCTAACCATCCAACC 60.222 48.000 0.00 0.00 31.94 3.77
55 56 3.791320 AGTCTCTCTAACCATCCAACCA 58.209 45.455 0.00 0.00 0.00 3.67
56 57 3.515901 AGTCTCTCTAACCATCCAACCAC 59.484 47.826 0.00 0.00 0.00 4.16
57 58 3.260884 GTCTCTCTAACCATCCAACCACA 59.739 47.826 0.00 0.00 0.00 4.17
58 59 3.515502 TCTCTCTAACCATCCAACCACAG 59.484 47.826 0.00 0.00 0.00 3.66
59 60 2.571653 TCTCTAACCATCCAACCACAGG 59.428 50.000 0.00 0.00 0.00 4.00
60 61 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
80 81 2.937149 GTTGGTTCGCTATTCCCTCTTC 59.063 50.000 0.00 0.00 0.00 2.87
133 134 2.106511 AGGACAATGCTAACGCCCATAT 59.893 45.455 0.00 0.00 34.43 1.78
141 142 2.484065 GCTAACGCCCATATGTGTGGTA 60.484 50.000 3.76 0.16 37.57 3.25
147 148 2.050144 CCCATATGTGTGGTAGGAGCT 58.950 52.381 1.24 0.00 37.57 4.09
152 153 6.299141 CCATATGTGTGGTAGGAGCTAAATT 58.701 40.000 1.24 0.00 34.46 1.82
154 155 4.216411 TGTGTGGTAGGAGCTAAATTCC 57.784 45.455 0.00 0.00 34.83 3.01
156 157 3.200165 GTGTGGTAGGAGCTAAATTCCCT 59.800 47.826 0.00 0.00 35.20 4.20
186 187 0.321671 ATAACACACAGACTGCGCCT 59.678 50.000 4.18 0.00 0.00 5.52
208 209 1.327460 GTCATCGCGTACATGCATGTT 59.673 47.619 35.45 19.99 41.97 2.71
397 403 4.201773 GCACATGAATTGCCATGATGTTTG 60.202 41.667 12.68 3.30 44.98 2.93
413 419 2.954989 TGTTTGCACTGAAGTTGCCATA 59.045 40.909 0.00 0.00 0.00 2.74
428 435 7.264373 AGTTGCCATAATATGTTTCAGCTAC 57.736 36.000 0.00 2.97 0.00 3.58
493 501 9.760077 AACGAGAAATTAAGAAACTAGACTTGA 57.240 29.630 0.00 0.00 0.00 3.02
549 557 3.367630 GCACTTAAAATTGCCATGGTTCG 59.632 43.478 14.67 0.00 32.21 3.95
552 560 6.329496 CACTTAAAATTGCCATGGTTCGTAT 58.671 36.000 14.67 0.00 0.00 3.06
673 681 6.001460 AGTTTAAGCACTATGGCAACTACAA 58.999 36.000 0.00 0.00 35.83 2.41
676 684 8.455682 GTTTAAGCACTATGGCAACTACAAATA 58.544 33.333 0.00 0.00 35.83 1.40
704 714 1.874872 CATGGCAACTTTTGGGCAAAG 59.125 47.619 0.00 0.00 46.70 2.77
728 743 9.840427 AAGAAAATTTCGTCGAAACATATCAAT 57.160 25.926 21.91 1.58 34.23 2.57
739 755 9.692749 GTCGAAACATATCAATATGGAGTCTAA 57.307 33.333 13.18 0.00 43.38 2.10
843 861 4.937201 AAGCCGAAAACCAAAAAGATCT 57.063 36.364 0.00 0.00 0.00 2.75
859 877 5.354842 AAGATCTTGCTGATGTCATCTGA 57.645 39.130 20.47 8.89 35.14 3.27
887 907 3.305267 CGGCAAAATGAGTGGTGATGAAA 60.305 43.478 0.00 0.00 0.00 2.69
904 924 3.825160 AAGCGTGTGGGCGATGTGT 62.825 57.895 0.00 0.00 38.18 3.72
914 934 1.408702 GGGCGATGTGTAAAATGCCAT 59.591 47.619 3.24 0.00 44.21 4.40
919 939 5.049060 GGCGATGTGTAAAATGCCATATGTA 60.049 40.000 1.24 0.00 42.03 2.29
922 942 7.572910 GCGATGTGTAAAATGCCATATGTATGA 60.573 37.037 1.24 0.00 35.75 2.15
934 954 5.334105 GCCATATGTATGAGGCGTTAGTTTG 60.334 44.000 1.24 0.00 37.41 2.93
950 970 7.534918 GCGTTAGTTTGTTCGTAATTTAATGGT 59.465 33.333 0.00 0.00 0.00 3.55
985 1005 7.768120 ACATAAACCAAAAGCACAAAAATCTCA 59.232 29.630 0.00 0.00 0.00 3.27
991 1011 9.341078 ACCAAAAGCACAAAAATCTCAAAATAT 57.659 25.926 0.00 0.00 0.00 1.28
999 1019 9.807649 CACAAAAATCTCAAAATATCCCCTTAG 57.192 33.333 0.00 0.00 0.00 2.18
1360 1400 3.582647 TCCCTCAAGATTTACACAGCTCA 59.417 43.478 0.00 0.00 0.00 4.26
1371 1411 1.302033 ACAGCTCAAGGTTGCTCGG 60.302 57.895 0.00 0.00 37.44 4.63
1426 1467 6.374333 CCCGTGTTACTAGTACTACCAAACTA 59.626 42.308 0.91 0.00 0.00 2.24
1437 1478 1.675552 ACCAAACTAGTTGCGCTGTT 58.324 45.000 9.34 3.28 35.74 3.16
1445 1486 2.110213 TTGCGCTGTTTCGGAGGT 59.890 55.556 9.73 0.00 0.00 3.85
1446 1487 1.525077 TTGCGCTGTTTCGGAGGTT 60.525 52.632 9.73 0.00 0.00 3.50
1447 1488 1.781025 TTGCGCTGTTTCGGAGGTTG 61.781 55.000 9.73 0.00 0.00 3.77
1448 1489 2.556287 CGCTGTTTCGGAGGTTGC 59.444 61.111 0.00 0.00 0.00 4.17
1449 1490 1.961277 CGCTGTTTCGGAGGTTGCT 60.961 57.895 0.00 0.00 0.00 3.91
1450 1491 1.869690 GCTGTTTCGGAGGTTGCTC 59.130 57.895 0.00 0.00 0.00 4.26
1451 1492 1.901650 GCTGTTTCGGAGGTTGCTCG 61.902 60.000 0.00 0.00 0.00 5.03
1452 1493 1.291877 CTGTTTCGGAGGTTGCTCGG 61.292 60.000 0.00 0.00 0.00 4.63
1453 1494 2.358247 TTTCGGAGGTTGCTCGGC 60.358 61.111 0.00 0.00 0.00 5.54
1455 1496 2.391724 TTTCGGAGGTTGCTCGGCTT 62.392 55.000 0.00 0.00 0.00 4.35
1456 1497 1.537814 TTCGGAGGTTGCTCGGCTTA 61.538 55.000 0.00 0.00 0.00 3.09
1457 1498 1.144057 CGGAGGTTGCTCGGCTTAT 59.856 57.895 0.00 0.00 0.00 1.73
1458 1499 0.876342 CGGAGGTTGCTCGGCTTATC 60.876 60.000 0.00 0.00 0.00 1.75
1465 1507 3.381949 GTTGCTCGGCTTATCGTAGATT 58.618 45.455 0.00 0.00 45.12 2.40
1471 1513 5.177696 GCTCGGCTTATCGTAGATTTTTGAT 59.822 40.000 0.00 0.00 45.12 2.57
1486 1528 8.089115 AGATTTTTGATAATTAGGAGTAGCGC 57.911 34.615 0.00 0.00 0.00 5.92
1487 1529 7.715249 AGATTTTTGATAATTAGGAGTAGCGCA 59.285 33.333 11.47 0.00 0.00 6.09
1488 1530 6.598753 TTTTGATAATTAGGAGTAGCGCAC 57.401 37.500 11.47 5.97 0.00 5.34
1489 1531 5.531122 TTGATAATTAGGAGTAGCGCACT 57.469 39.130 11.47 11.48 41.47 4.40
1490 1532 6.644248 TTGATAATTAGGAGTAGCGCACTA 57.356 37.500 11.47 0.63 37.72 2.74
1531 1573 7.383029 GCTTCAAGATTTTCAAATCATGTGTCA 59.617 33.333 13.50 0.00 45.59 3.58
1540 1587 6.065976 TCAAATCATGTGTCAGGGACTATT 57.934 37.500 0.00 0.00 36.02 1.73
1542 1589 3.801114 TCATGTGTCAGGGACTATTCG 57.199 47.619 0.00 0.00 36.02 3.34
1554 1601 2.477375 GGACTATTCGTGCGTGTTTTGA 59.523 45.455 0.00 0.00 0.00 2.69
1570 1617 4.513692 TGTTTTGATGTTGTCTTAGGTCCG 59.486 41.667 0.00 0.00 0.00 4.79
1571 1618 4.610605 TTTGATGTTGTCTTAGGTCCGA 57.389 40.909 0.00 0.00 0.00 4.55
1572 1619 3.587797 TGATGTTGTCTTAGGTCCGAC 57.412 47.619 0.00 0.00 0.00 4.79
1573 1620 2.094906 TGATGTTGTCTTAGGTCCGACG 60.095 50.000 0.00 0.00 32.93 5.12
1574 1621 1.321474 TGTTGTCTTAGGTCCGACGT 58.679 50.000 0.00 0.00 32.93 4.34
1575 1622 1.267806 TGTTGTCTTAGGTCCGACGTC 59.732 52.381 5.18 5.18 32.93 4.34
1576 1623 0.518636 TTGTCTTAGGTCCGACGTCG 59.481 55.000 30.33 30.33 39.44 5.12
1586 1633 2.099831 CGACGTCGGCTACTGTCC 59.900 66.667 29.70 0.00 35.37 4.02
1599 1646 4.119862 GCTACTGTCCGCATTCATTTAGA 58.880 43.478 0.00 0.00 0.00 2.10
1686 1734 2.158986 TGTTGTGAATGGGGCAAACAAG 60.159 45.455 0.00 0.00 31.80 3.16
1710 1758 7.989826 AGTTAATCAAAGAATGGACATAGTGC 58.010 34.615 0.00 0.00 0.00 4.40
1729 1777 2.233676 TGCGACTACACATGGAAGTCAT 59.766 45.455 18.57 0.15 39.69 3.06
1793 1841 3.133542 GGGTGTCATGTCATCTCAGATGA 59.866 47.826 13.76 13.76 0.00 2.92
1795 1843 5.011431 GGGTGTCATGTCATCTCAGATGATA 59.989 44.000 20.49 18.05 0.00 2.15
1979 2031 9.014297 CACAGAATATTAGAAGTGGACCTTTTT 57.986 33.333 0.00 0.00 32.03 1.94
2062 2114 4.082300 TGGAATTTGATGGGACGATTTGTG 60.082 41.667 0.00 0.00 0.00 3.33
2086 2138 6.967199 TGCAAGTATATCTCGTATGCGATAAG 59.033 38.462 6.30 0.00 46.80 1.73
2088 2140 8.121086 GCAAGTATATCTCGTATGCGATAAGTA 58.879 37.037 6.30 0.00 46.80 2.24
2149 2204 1.160137 GGACTTGTGTCAGTCATGGC 58.840 55.000 3.39 0.00 44.53 4.40
2150 2205 1.160137 GACTTGTGTCAGTCATGGCC 58.840 55.000 0.00 0.00 42.57 5.36
2151 2206 0.767375 ACTTGTGTCAGTCATGGCCT 59.233 50.000 3.32 0.00 0.00 5.19
2152 2207 1.271054 ACTTGTGTCAGTCATGGCCTC 60.271 52.381 3.32 0.00 0.00 4.70
2153 2208 0.764271 TTGTGTCAGTCATGGCCTCA 59.236 50.000 3.32 0.00 0.00 3.86
2154 2209 0.986527 TGTGTCAGTCATGGCCTCAT 59.013 50.000 3.32 0.00 0.00 2.90
2276 2333 2.817665 TGTGCCCCATTGATGATTTGA 58.182 42.857 0.00 0.00 0.00 2.69
2283 2340 6.013898 TGCCCCATTGATGATTTGAAACTTTA 60.014 34.615 0.00 0.00 0.00 1.85
2284 2341 6.536224 GCCCCATTGATGATTTGAAACTTTAG 59.464 38.462 0.00 0.00 0.00 1.85
2323 2380 7.437862 GGCTACAGCTATCAATATTAGAGCATC 59.562 40.741 14.45 3.09 41.70 3.91
2477 2534 1.002251 CGAGGAGACATAGAAGACGGC 60.002 57.143 0.00 0.00 0.00 5.68
2709 2766 4.916983 ATTGACAGTTTGCTTGTGCTTA 57.083 36.364 0.00 0.00 40.48 3.09
2710 2767 4.916983 TTGACAGTTTGCTTGTGCTTAT 57.083 36.364 0.00 0.00 40.48 1.73
2711 2768 4.227512 TGACAGTTTGCTTGTGCTTATG 57.772 40.909 0.00 0.00 40.48 1.90
2827 2887 0.037303 CATGCAAGTCCACTCTGGGT 59.963 55.000 0.00 0.00 38.32 4.51
2838 2898 2.223479 CCACTCTGGGTTTTTGTGAACG 60.223 50.000 0.00 0.00 32.67 3.95
3048 3110 9.031537 TCCAAATCTCTTACTTCTGTGTATACA 57.968 33.333 0.08 0.08 35.08 2.29
3192 3261 3.777522 TGGTGTTTGTTCCTCCCAATTTT 59.222 39.130 0.00 0.00 0.00 1.82
3267 3336 4.555708 CGCCACATTTACAAGTTGCACTTA 60.556 41.667 1.81 0.00 36.03 2.24
3304 3373 6.540914 ACAAAGCTACTGTTGCAGTTTTACTA 59.459 34.615 16.07 0.00 42.59 1.82
3347 3416 5.444877 CGCATATGTGTTTTGGCTTCATTTG 60.445 40.000 8.16 0.00 0.00 2.32
3360 3435 6.222389 TGGCTTCATTTGAACTTTTGTATGG 58.778 36.000 0.00 0.00 0.00 2.74
3383 3458 2.671396 CACTTGTTTCGATTAGGGGTCG 59.329 50.000 0.00 0.00 40.30 4.79
3405 3480 7.540745 GGTCGTGTTGCTCATTAATGTTAAATT 59.459 33.333 14.97 0.00 0.00 1.82
3426 3504 7.540474 AATTGACTCCTTCACTTGTAGTAGA 57.460 36.000 0.00 0.00 32.26 2.59
3794 3961 4.530553 TGTAGATTGGTGGAGCTAGTGAAA 59.469 41.667 0.00 0.00 0.00 2.69
3908 4076 2.483714 GCTTCATCGTGAGCTTGGGATA 60.484 50.000 0.00 0.00 0.00 2.59
3977 4145 2.225091 TGCATTCATCCCACCAGAACTT 60.225 45.455 0.00 0.00 0.00 2.66
4083 4251 7.967908 TCATAGAACCTTTCCCAGATCTAATC 58.032 38.462 0.00 0.00 29.57 1.75
4351 4519 2.335316 TAGGCACTGGTTTCGTGTTT 57.665 45.000 0.00 0.00 41.52 2.83
4360 4528 4.215827 ACTGGTTTCGTGTTTGTGTTGTAA 59.784 37.500 0.00 0.00 0.00 2.41
4370 4539 5.004345 GTGTTTGTGTTGTAATGTGTTGCTC 59.996 40.000 0.00 0.00 0.00 4.26
4390 4559 4.400567 GCTCTCTTACAAATGGGAGCATTT 59.599 41.667 9.63 0.00 43.60 2.32
4396 4565 7.826690 TCTTACAAATGGGAGCATTTAACTTC 58.173 34.615 0.00 0.00 33.85 3.01
4399 4568 5.774690 ACAAATGGGAGCATTTAACTTCTCA 59.225 36.000 0.00 0.00 33.85 3.27
4403 4572 3.282885 GGAGCATTTAACTTCTCAGGGG 58.717 50.000 0.00 0.00 0.00 4.79
4410 4579 3.080121 CTTCTCAGGGGCGCCTCT 61.080 66.667 27.30 27.30 0.00 3.69
4412 4581 1.743321 CTTCTCAGGGGCGCCTCTAG 61.743 65.000 32.60 25.05 0.00 2.43
4425 4594 0.901124 CCTCTAGCTTCTGTGCCTGT 59.099 55.000 0.00 0.00 0.00 4.00
4430 4599 1.370900 GCTTCTGTGCCTGTTTGCG 60.371 57.895 0.00 0.00 0.00 4.85
4506 4675 6.755206 TGACGTCTCCTTTTTCTGAAAGATA 58.245 36.000 17.92 0.00 46.36 1.98
4510 4679 8.722394 ACGTCTCCTTTTTCTGAAAGATATTTC 58.278 33.333 5.86 5.86 46.36 2.17
4563 4732 6.071447 TGGCATTGTAATGTTTGAGCACTTAT 60.071 34.615 6.48 0.00 38.65 1.73
4564 4733 6.254157 GGCATTGTAATGTTTGAGCACTTATG 59.746 38.462 6.48 0.00 38.65 1.90
4565 4734 6.808212 GCATTGTAATGTTTGAGCACTTATGT 59.192 34.615 6.48 0.00 38.65 2.29
4566 4735 7.201376 GCATTGTAATGTTTGAGCACTTATGTG 60.201 37.037 4.42 4.42 41.36 3.21
4567 4736 7.503521 TTGTAATGTTTGAGCACTTATGTGA 57.496 32.000 12.65 0.00 46.55 3.58
4568 4737 7.503521 TGTAATGTTTGAGCACTTATGTGAA 57.496 32.000 12.65 0.00 46.55 3.18
4569 4738 7.935520 TGTAATGTTTGAGCACTTATGTGAAA 58.064 30.769 12.65 2.14 46.55 2.69
4570 4739 8.575589 TGTAATGTTTGAGCACTTATGTGAAAT 58.424 29.630 12.65 0.00 46.55 2.17
4611 4793 6.677781 GGAGATGATTTCCGAACAATACAA 57.322 37.500 0.00 0.00 0.00 2.41
4631 4813 1.834263 ACATGGACTAGGGTTCTGCTC 59.166 52.381 0.00 0.00 0.00 4.26
4661 4843 3.542648 CTGTGTCTTGATGCAGGATGAT 58.457 45.455 0.00 0.00 39.69 2.45
4685 4867 3.561143 ACTGTTACAAGTGGCAATTGGA 58.439 40.909 28.50 20.22 31.76 3.53
4712 4894 8.307483 CACTTTCTTTCTTCCTACATAGACTCA 58.693 37.037 0.00 0.00 0.00 3.41
4713 4895 9.041354 ACTTTCTTTCTTCCTACATAGACTCAT 57.959 33.333 0.00 0.00 0.00 2.90
4714 4896 9.883142 CTTTCTTTCTTCCTACATAGACTCATT 57.117 33.333 0.00 0.00 0.00 2.57
4715 4897 9.877178 TTTCTTTCTTCCTACATAGACTCATTC 57.123 33.333 0.00 0.00 0.00 2.67
4716 4898 8.830915 TCTTTCTTCCTACATAGACTCATTCT 57.169 34.615 0.00 0.00 38.51 2.40
4717 4899 9.922477 TCTTTCTTCCTACATAGACTCATTCTA 57.078 33.333 0.00 0.00 41.29 2.10
4724 4906 8.634444 TCCTACATAGACTCATTCTAAAAGAGC 58.366 37.037 0.00 0.00 40.38 4.09
4725 4907 7.593273 CCTACATAGACTCATTCTAAAAGAGCG 59.407 40.741 0.00 0.00 40.38 5.03
4726 4908 7.101652 ACATAGACTCATTCTAAAAGAGCGA 57.898 36.000 0.00 0.00 40.38 4.93
4727 4909 6.975772 ACATAGACTCATTCTAAAAGAGCGAC 59.024 38.462 0.00 0.00 40.38 5.19
4728 4910 4.416620 AGACTCATTCTAAAAGAGCGACG 58.583 43.478 0.00 0.00 30.17 5.12
4729 4911 4.082679 AGACTCATTCTAAAAGAGCGACGT 60.083 41.667 0.00 0.00 30.17 4.34
4730 4912 4.557205 ACTCATTCTAAAAGAGCGACGTT 58.443 39.130 0.00 0.00 32.71 3.99
4731 4913 4.989168 ACTCATTCTAAAAGAGCGACGTTT 59.011 37.500 0.00 0.00 34.84 3.60
4732 4914 5.465724 ACTCATTCTAAAAGAGCGACGTTTT 59.534 36.000 0.00 0.00 32.94 2.43
4733 4915 5.675970 TCATTCTAAAAGAGCGACGTTTTG 58.324 37.500 0.00 3.10 32.94 2.44
4734 4916 4.461992 TTCTAAAAGAGCGACGTTTTGG 57.538 40.909 0.00 0.00 32.94 3.28
4735 4917 2.222445 TCTAAAAGAGCGACGTTTTGGC 59.778 45.455 0.00 0.00 32.94 4.52
4736 4918 1.021968 AAAAGAGCGACGTTTTGGCT 58.978 45.000 0.00 4.38 40.29 4.75
4738 4920 2.861006 GAGCGACGTTTTGGCTCC 59.139 61.111 16.27 4.20 45.67 4.70
4739 4921 1.668151 GAGCGACGTTTTGGCTCCT 60.668 57.895 16.27 0.00 45.67 3.69
4740 4922 0.389426 GAGCGACGTTTTGGCTCCTA 60.389 55.000 16.27 0.00 45.67 2.94
4741 4923 0.389948 AGCGACGTTTTGGCTCCTAG 60.390 55.000 0.00 0.00 29.31 3.02
4742 4924 1.359459 GCGACGTTTTGGCTCCTAGG 61.359 60.000 0.82 0.82 0.00 3.02
4743 4925 0.037605 CGACGTTTTGGCTCCTAGGT 60.038 55.000 9.08 0.00 0.00 3.08
4744 4926 1.439679 GACGTTTTGGCTCCTAGGTG 58.560 55.000 9.08 7.68 0.00 4.00
4745 4927 0.605589 ACGTTTTGGCTCCTAGGTGC 60.606 55.000 24.68 24.68 0.00 5.01
4746 4928 0.605319 CGTTTTGGCTCCTAGGTGCA 60.605 55.000 31.19 17.76 36.47 4.57
4747 4929 1.839424 GTTTTGGCTCCTAGGTGCAT 58.161 50.000 31.19 0.00 36.47 3.96
4748 4930 2.679639 CGTTTTGGCTCCTAGGTGCATA 60.680 50.000 31.19 19.50 36.47 3.14
4749 4931 3.555966 GTTTTGGCTCCTAGGTGCATAT 58.444 45.455 31.19 0.00 36.47 1.78
4750 4932 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
4751 4933 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
4762 4944 3.234368 GCATATGCACCCGTTTTCG 57.766 52.632 22.84 0.00 41.59 3.46
4763 4945 0.730265 GCATATGCACCCGTTTTCGA 59.270 50.000 22.84 0.00 42.86 3.71
4764 4946 1.131504 GCATATGCACCCGTTTTCGAA 59.868 47.619 22.84 0.00 42.86 3.71
4765 4947 2.414824 GCATATGCACCCGTTTTCGAAA 60.415 45.455 22.84 6.47 42.86 3.46
4766 4948 3.733684 GCATATGCACCCGTTTTCGAAAT 60.734 43.478 22.84 0.00 42.86 2.17
4767 4949 4.496673 GCATATGCACCCGTTTTCGAAATA 60.497 41.667 22.84 0.03 42.86 1.40
4768 4950 6.508137 GCATATGCACCCGTTTTCGAAATAC 61.508 44.000 22.84 11.44 42.86 1.89
4769 4951 8.799021 GCATATGCACCCGTTTTCGAAATACA 62.799 42.308 22.84 0.00 42.86 2.29
4812 4994 2.379972 TGGAACAAAAATCCCACGTGT 58.620 42.857 15.65 0.00 36.04 4.49
4813 4995 3.552875 TGGAACAAAAATCCCACGTGTA 58.447 40.909 15.65 2.16 36.04 2.90
4814 4996 4.145807 TGGAACAAAAATCCCACGTGTAT 58.854 39.130 15.65 4.75 36.04 2.29
4815 4997 5.314529 TGGAACAAAAATCCCACGTGTATA 58.685 37.500 15.65 0.00 36.04 1.47
4816 4998 5.946972 TGGAACAAAAATCCCACGTGTATAT 59.053 36.000 15.65 1.65 36.04 0.86
4817 4999 6.094325 TGGAACAAAAATCCCACGTGTATATC 59.906 38.462 15.65 0.00 36.04 1.63
4818 5000 6.445357 AACAAAAATCCCACGTGTATATCC 57.555 37.500 15.65 0.00 0.00 2.59
4819 5001 4.573201 ACAAAAATCCCACGTGTATATCCG 59.427 41.667 15.65 0.00 0.00 4.18
4820 5002 3.396260 AAATCCCACGTGTATATCCGG 57.604 47.619 15.65 6.61 0.00 5.14
4821 5003 2.297698 ATCCCACGTGTATATCCGGA 57.702 50.000 15.65 6.61 0.00 5.14
4822 5004 1.321474 TCCCACGTGTATATCCGGAC 58.679 55.000 15.65 0.00 0.00 4.79
4823 5005 1.034356 CCCACGTGTATATCCGGACA 58.966 55.000 15.65 0.00 0.00 4.02
4824 5006 1.616865 CCCACGTGTATATCCGGACAT 59.383 52.381 15.65 2.01 0.00 3.06
4825 5007 2.036733 CCCACGTGTATATCCGGACATT 59.963 50.000 15.65 0.00 0.00 2.71
4826 5008 3.493699 CCCACGTGTATATCCGGACATTT 60.494 47.826 15.65 0.00 0.00 2.32
4827 5009 4.124238 CCACGTGTATATCCGGACATTTT 58.876 43.478 15.65 0.00 0.00 1.82
4828 5010 5.291178 CCACGTGTATATCCGGACATTTTA 58.709 41.667 15.65 0.00 0.00 1.52
4829 5011 5.929992 CCACGTGTATATCCGGACATTTTAT 59.070 40.000 15.65 2.53 0.00 1.40
4830 5012 6.128661 CCACGTGTATATCCGGACATTTTATG 60.129 42.308 15.65 0.00 0.00 1.90
4832 5014 6.422701 ACGTGTATATCCGGACATTTTATGTG 59.577 38.462 6.12 0.00 45.03 3.21
4833 5015 6.599437 GTGTATATCCGGACATTTTATGTGC 58.401 40.000 6.12 0.00 45.03 4.57
4851 5033 4.421520 GTGCGTTCACAAAGTTTTGATG 57.578 40.909 11.29 6.30 42.66 3.07
4852 5034 4.101942 GTGCGTTCACAAAGTTTTGATGA 58.898 39.130 11.29 8.21 42.66 2.92
4853 5035 4.560819 GTGCGTTCACAAAGTTTTGATGAA 59.439 37.500 11.29 12.67 42.66 2.57
4854 5036 5.061560 GTGCGTTCACAAAGTTTTGATGAAA 59.938 36.000 11.29 1.92 42.66 2.69
4855 5037 5.635280 TGCGTTCACAAAGTTTTGATGAAAA 59.365 32.000 11.29 0.00 40.55 2.29
4856 5038 6.146184 TGCGTTCACAAAGTTTTGATGAAAAA 59.854 30.769 11.29 4.85 40.55 1.94
4857 5039 7.148507 TGCGTTCACAAAGTTTTGATGAAAAAT 60.149 29.630 11.29 0.00 39.86 1.82
4858 5040 7.162385 GCGTTCACAAAGTTTTGATGAAAAATG 59.838 33.333 11.29 0.00 39.86 2.32
4859 5041 8.379161 CGTTCACAAAGTTTTGATGAAAAATGA 58.621 29.630 11.29 0.02 39.86 2.57
4860 5042 9.476761 GTTCACAAAGTTTTGATGAAAAATGAC 57.523 29.630 11.29 3.10 39.86 3.06
4861 5043 7.893824 TCACAAAGTTTTGATGAAAAATGACG 58.106 30.769 11.29 0.00 39.86 4.35
4862 5044 7.543868 TCACAAAGTTTTGATGAAAAATGACGT 59.456 29.630 11.29 0.00 39.86 4.34
4863 5045 8.167985 CACAAAGTTTTGATGAAAAATGACGTT 58.832 29.630 11.29 0.00 39.86 3.99
4864 5046 8.716909 ACAAAGTTTTGATGAAAAATGACGTTT 58.283 25.926 11.29 0.00 39.86 3.60
4865 5047 9.540431 CAAAGTTTTGATGAAAAATGACGTTTT 57.460 25.926 0.00 0.00 39.86 2.43
4929 5113 4.692523 AAAACCCCAGAAACCTATCCAT 57.307 40.909 0.00 0.00 0.00 3.41
4945 5129 1.284785 TCCATGGGCTGGTAAAAGAGG 59.715 52.381 13.02 0.00 46.08 3.69
4963 5147 1.790387 GCAGCTACAGCCAGTTTCG 59.210 57.895 0.00 0.00 43.38 3.46
4973 5157 0.586802 GCCAGTTTCGTCACTTCCAC 59.413 55.000 0.00 0.00 0.00 4.02
4978 5162 3.059597 CAGTTTCGTCACTTCCACATGAC 60.060 47.826 0.00 0.00 41.54 3.06
4981 5165 0.792640 CGTCACTTCCACATGACAGC 59.207 55.000 0.00 0.00 44.54 4.40
5025 5210 3.621715 GCCAACTATTACCTCCGTTTGAG 59.378 47.826 0.00 0.00 41.07 3.02
5036 5221 1.868498 TCCGTTTGAGCTAAAACCACG 59.132 47.619 19.21 9.90 36.83 4.94
5075 5260 1.703513 AGGGAGTACAACCAGTTTCCC 59.296 52.381 9.20 9.20 45.97 3.97
5087 5275 3.245264 ACCAGTTTCCCCACTTTCATAGG 60.245 47.826 0.00 0.00 0.00 2.57
5088 5276 3.010138 CCAGTTTCCCCACTTTCATAGGA 59.990 47.826 0.00 0.00 0.00 2.94
5089 5277 4.265073 CAGTTTCCCCACTTTCATAGGAG 58.735 47.826 0.00 0.00 0.00 3.69
5090 5278 4.019321 CAGTTTCCCCACTTTCATAGGAGA 60.019 45.833 0.00 0.00 0.00 3.71
5091 5279 4.226168 AGTTTCCCCACTTTCATAGGAGAG 59.774 45.833 0.00 0.00 0.00 3.20
5113 5301 8.752766 AGAGTGATGCTTTTATGTTTGATTTG 57.247 30.769 0.00 0.00 0.00 2.32
5136 5324 7.079182 TGTAAGCTTTATTTGAACCGTATGG 57.921 36.000 3.20 0.00 42.84 2.74
5152 5340 4.142403 CCGTATGGCATGTGTTTGATCTTT 60.142 41.667 10.98 0.00 0.00 2.52
5219 5407 4.196971 AGTCCAGTTGTTCAAAGTGGTAC 58.803 43.478 10.85 8.38 40.70 3.34
5290 5506 6.022017 GTGTTTGCACAAGTACGTAAAGAAAC 60.022 38.462 0.00 1.44 44.64 2.78
5312 5528 7.510675 AACAGAGGAAAAACCAGATATAGGA 57.489 36.000 0.87 0.00 42.04 2.94
5332 5548 3.006003 GGAGAAGTTGTATCGGGGATCTC 59.994 52.174 0.00 0.00 33.12 2.75
5338 5554 5.148502 AGTTGTATCGGGGATCTCTTACAT 58.851 41.667 0.00 0.00 0.00 2.29
5339 5555 5.011125 AGTTGTATCGGGGATCTCTTACATG 59.989 44.000 0.00 0.00 0.00 3.21
5415 5633 3.188667 GGAGAAGATTTTCGAAAAGCCGT 59.811 43.478 29.51 20.38 38.38 5.68
5461 5679 8.999431 GTCACAACGGGAATTATCATATATTGT 58.001 33.333 0.00 0.00 0.00 2.71
5500 5719 7.612065 ACTACTTCCATGGTGCATAGTATTA 57.388 36.000 12.58 0.00 0.00 0.98
5502 5721 8.314751 ACTACTTCCATGGTGCATAGTATTATC 58.685 37.037 12.58 0.00 0.00 1.75
5503 5722 7.321717 ACTTCCATGGTGCATAGTATTATCT 57.678 36.000 12.58 0.00 0.00 1.98
5504 5723 8.435931 ACTTCCATGGTGCATAGTATTATCTA 57.564 34.615 12.58 0.00 0.00 1.98
5506 5725 9.896645 CTTCCATGGTGCATAGTATTATCTATT 57.103 33.333 12.58 0.00 0.00 1.73
5536 5755 9.085645 TGGTATCATAGTGACCTTATTTATCGT 57.914 33.333 0.00 0.00 34.13 3.73
5541 5760 7.598869 TCATAGTGACCTTATTTATCGTCATGC 59.401 37.037 0.00 0.00 37.55 4.06
5543 5762 6.349300 AGTGACCTTATTTATCGTCATGCTT 58.651 36.000 0.00 0.00 37.55 3.91
5544 5763 6.258727 AGTGACCTTATTTATCGTCATGCTTG 59.741 38.462 0.00 0.00 37.55 4.01
5545 5764 6.257849 GTGACCTTATTTATCGTCATGCTTGA 59.742 38.462 0.00 0.00 37.55 3.02
5600 5819 6.465439 ACGGTATCATAACATGACTCTCAA 57.535 37.500 0.00 0.00 43.01 3.02
5601 5820 6.873997 ACGGTATCATAACATGACTCTCAAA 58.126 36.000 0.00 0.00 43.01 2.69
5602 5821 7.327975 ACGGTATCATAACATGACTCTCAAAA 58.672 34.615 0.00 0.00 43.01 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.061905 TGGTATCCCAGCCCATCAGG 61.062 60.000 0.00 0.00 35.17 3.86
14 15 1.070604 ATGGTATCCCAGCCCATCAG 58.929 55.000 0.00 0.00 46.15 2.90
15 16 2.269023 CTATGGTATCCCAGCCCATCA 58.731 52.381 0.00 0.00 46.15 3.07
16 17 2.237392 GACTATGGTATCCCAGCCCATC 59.763 54.545 0.00 0.00 46.15 3.51
17 18 2.157942 AGACTATGGTATCCCAGCCCAT 60.158 50.000 0.00 0.00 46.15 4.00
18 19 1.223077 AGACTATGGTATCCCAGCCCA 59.777 52.381 0.00 0.00 46.15 5.36
19 20 1.903183 GAGACTATGGTATCCCAGCCC 59.097 57.143 0.00 0.00 46.15 5.19
20 21 2.829120 GAGAGACTATGGTATCCCAGCC 59.171 54.545 0.00 0.00 46.15 4.85
21 22 3.773560 AGAGAGACTATGGTATCCCAGC 58.226 50.000 0.00 0.00 46.15 4.85
22 23 5.712917 GGTTAGAGAGACTATGGTATCCCAG 59.287 48.000 0.00 0.00 46.15 4.45
24 25 5.642165 TGGTTAGAGAGACTATGGTATCCC 58.358 45.833 0.00 0.00 34.54 3.85
25 26 6.378848 GGATGGTTAGAGAGACTATGGTATCC 59.621 46.154 0.00 0.00 34.54 2.59
26 27 6.948886 TGGATGGTTAGAGAGACTATGGTATC 59.051 42.308 0.00 0.00 34.24 2.24
27 28 6.864421 TGGATGGTTAGAGAGACTATGGTAT 58.136 40.000 0.00 0.00 0.00 2.73
28 29 6.275692 TGGATGGTTAGAGAGACTATGGTA 57.724 41.667 0.00 0.00 0.00 3.25
29 30 5.144159 TGGATGGTTAGAGAGACTATGGT 57.856 43.478 0.00 0.00 0.00 3.55
30 31 5.221541 GGTTGGATGGTTAGAGAGACTATGG 60.222 48.000 0.00 0.00 0.00 2.74
31 32 5.363868 TGGTTGGATGGTTAGAGAGACTATG 59.636 44.000 0.00 0.00 0.00 2.23
32 33 5.364157 GTGGTTGGATGGTTAGAGAGACTAT 59.636 44.000 0.00 0.00 0.00 2.12
33 34 4.710375 GTGGTTGGATGGTTAGAGAGACTA 59.290 45.833 0.00 0.00 0.00 2.59
34 35 3.515901 GTGGTTGGATGGTTAGAGAGACT 59.484 47.826 0.00 0.00 0.00 3.24
35 36 3.260884 TGTGGTTGGATGGTTAGAGAGAC 59.739 47.826 0.00 0.00 0.00 3.36
36 37 3.515502 CTGTGGTTGGATGGTTAGAGAGA 59.484 47.826 0.00 0.00 0.00 3.10
37 38 3.369892 CCTGTGGTTGGATGGTTAGAGAG 60.370 52.174 0.00 0.00 0.00 3.20
38 39 2.571653 CCTGTGGTTGGATGGTTAGAGA 59.428 50.000 0.00 0.00 0.00 3.10
39 40 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
40 41 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
41 42 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
54 55 1.737793 GGAATAGCGAACCAACCTGTG 59.262 52.381 0.00 0.00 0.00 3.66
55 56 1.339727 GGGAATAGCGAACCAACCTGT 60.340 52.381 0.00 0.00 0.00 4.00
56 57 1.065418 AGGGAATAGCGAACCAACCTG 60.065 52.381 0.00 0.00 0.00 4.00
57 58 1.209747 GAGGGAATAGCGAACCAACCT 59.790 52.381 0.00 0.00 0.00 3.50
58 59 1.209747 AGAGGGAATAGCGAACCAACC 59.790 52.381 0.00 0.00 0.00 3.77
59 60 2.693267 AGAGGGAATAGCGAACCAAC 57.307 50.000 0.00 0.00 0.00 3.77
60 61 2.838202 AGAAGAGGGAATAGCGAACCAA 59.162 45.455 0.00 0.00 0.00 3.67
61 62 2.467880 AGAAGAGGGAATAGCGAACCA 58.532 47.619 0.00 0.00 0.00 3.67
62 63 3.545366 AAGAAGAGGGAATAGCGAACC 57.455 47.619 0.00 0.00 0.00 3.62
63 64 4.935808 TGAAAAGAAGAGGGAATAGCGAAC 59.064 41.667 0.00 0.00 0.00 3.95
64 65 5.160607 TGAAAAGAAGAGGGAATAGCGAA 57.839 39.130 0.00 0.00 0.00 4.70
65 66 4.819105 TGAAAAGAAGAGGGAATAGCGA 57.181 40.909 0.00 0.00 0.00 4.93
133 134 3.054655 GGGAATTTAGCTCCTACCACACA 60.055 47.826 0.00 0.00 33.11 3.72
141 142 2.093447 CGTGTGAGGGAATTTAGCTCCT 60.093 50.000 0.00 0.00 33.11 3.69
147 148 0.988832 AGGGCGTGTGAGGGAATTTA 59.011 50.000 0.00 0.00 0.00 1.40
152 153 1.117150 GTTATAGGGCGTGTGAGGGA 58.883 55.000 0.00 0.00 0.00 4.20
154 155 1.206132 TGTGTTATAGGGCGTGTGAGG 59.794 52.381 0.00 0.00 0.00 3.86
156 157 1.619332 TGTGTGTTATAGGGCGTGTGA 59.381 47.619 0.00 0.00 0.00 3.58
186 187 0.248866 ATGCATGTACGCGATGACGA 60.249 50.000 15.93 0.00 42.66 4.20
198 199 7.230849 TCTAAAAAGATTCCAACATGCATGT 57.769 32.000 26.61 26.61 44.20 3.21
397 403 5.505173 ACATATTATGGCAACTTCAGTGC 57.495 39.130 8.48 0.00 37.61 4.40
413 419 9.944376 TGTAGAAGAAAGTAGCTGAAACATATT 57.056 29.630 0.00 0.00 0.00 1.28
569 577 4.098914 TGGCAATTCCAGTACTTTGACT 57.901 40.909 11.27 0.00 40.72 3.41
673 681 7.769970 CCCAAAAGTTGCCATGATGTTTATATT 59.230 33.333 0.00 0.00 0.00 1.28
676 684 5.490159 CCCAAAAGTTGCCATGATGTTTAT 58.510 37.500 0.00 0.00 0.00 1.40
728 743 8.696374 ACGAGATCTTCAAAATTAGACTCCATA 58.304 33.333 0.00 0.00 0.00 2.74
810 827 6.776094 TGGTTTTCGGCTTAAAAATGTTTTG 58.224 32.000 0.00 0.00 30.53 2.44
843 861 5.928264 CCGTATAATCAGATGACATCAGCAA 59.072 40.000 17.57 0.45 34.14 3.91
859 877 5.189928 TCACCACTCATTTTGCCGTATAAT 58.810 37.500 0.00 0.00 0.00 1.28
887 907 2.443260 TTACACATCGCCCACACGCT 62.443 55.000 0.00 0.00 0.00 5.07
904 924 5.312895 ACGCCTCATACATATGGCATTTTA 58.687 37.500 4.78 0.00 45.13 1.52
914 934 5.517411 CGAACAAACTAACGCCTCATACATA 59.483 40.000 0.00 0.00 0.00 2.29
919 939 2.762745 ACGAACAAACTAACGCCTCAT 58.237 42.857 0.00 0.00 0.00 2.90
922 942 5.678132 AAATTACGAACAAACTAACGCCT 57.322 34.783 0.00 0.00 0.00 5.52
953 973 9.988815 TTTTGTGCTTTTGGTTTATGTATGTAT 57.011 25.926 0.00 0.00 0.00 2.29
956 976 9.810231 GATTTTTGTGCTTTTGGTTTATGTATG 57.190 29.630 0.00 0.00 0.00 2.39
960 980 8.140677 TGAGATTTTTGTGCTTTTGGTTTATG 57.859 30.769 0.00 0.00 0.00 1.90
1060 1080 3.072468 TCGGCGAGGGGAACGAAT 61.072 61.111 4.99 0.00 31.79 3.34
1301 1341 0.710588 TAGGAGGGGAGCAGAGACAA 59.289 55.000 0.00 0.00 0.00 3.18
1360 1400 0.955919 GCACTAAGCCGAGCAACCTT 60.956 55.000 0.00 0.00 37.23 3.50
1426 1467 1.961277 CCTCCGAAACAGCGCAACT 60.961 57.895 11.47 0.00 0.00 3.16
1432 1473 1.869690 GAGCAACCTCCGAAACAGC 59.130 57.895 0.00 0.00 31.68 4.40
1437 1478 1.537814 TAAGCCGAGCAACCTCCGAA 61.538 55.000 0.00 0.00 34.49 4.30
1445 1486 3.728076 AATCTACGATAAGCCGAGCAA 57.272 42.857 0.00 0.00 0.00 3.91
1446 1487 3.728076 AAATCTACGATAAGCCGAGCA 57.272 42.857 0.00 0.00 0.00 4.26
1447 1488 4.506654 TCAAAAATCTACGATAAGCCGAGC 59.493 41.667 0.00 0.00 0.00 5.03
1448 1489 6.771188 ATCAAAAATCTACGATAAGCCGAG 57.229 37.500 0.00 0.00 0.00 4.63
1449 1490 8.827177 ATTATCAAAAATCTACGATAAGCCGA 57.173 30.769 0.00 0.00 34.71 5.54
1465 1507 6.346096 AGTGCGCTACTCCTAATTATCAAAA 58.654 36.000 9.73 0.00 33.17 2.44
1471 1513 4.260907 CGTGTAGTGCGCTACTCCTAATTA 60.261 45.833 31.48 11.50 45.84 1.40
1478 1520 0.248134 CTCCGTGTAGTGCGCTACTC 60.248 60.000 31.48 27.28 45.84 2.59
1479 1521 0.959372 ACTCCGTGTAGTGCGCTACT 60.959 55.000 31.48 13.16 45.84 2.57
1480 1522 0.109412 AACTCCGTGTAGTGCGCTAC 60.109 55.000 26.94 26.94 45.85 3.58
1481 1523 1.131126 GTAACTCCGTGTAGTGCGCTA 59.869 52.381 9.73 1.99 0.00 4.26
1482 1524 0.109412 GTAACTCCGTGTAGTGCGCT 60.109 55.000 9.73 4.58 0.00 5.92
1483 1525 0.387622 TGTAACTCCGTGTAGTGCGC 60.388 55.000 0.00 0.00 0.00 6.09
1484 1526 1.614385 CTGTAACTCCGTGTAGTGCG 58.386 55.000 0.00 0.00 0.00 5.34
1485 1527 1.347320 GCTGTAACTCCGTGTAGTGC 58.653 55.000 0.00 0.00 0.00 4.40
1486 1528 1.614385 CGCTGTAACTCCGTGTAGTG 58.386 55.000 0.00 0.00 0.00 2.74
1487 1529 0.109412 GCGCTGTAACTCCGTGTAGT 60.109 55.000 0.00 0.00 0.00 2.73
1488 1530 0.170561 AGCGCTGTAACTCCGTGTAG 59.829 55.000 10.39 0.00 0.00 2.74
1489 1531 0.599558 AAGCGCTGTAACTCCGTGTA 59.400 50.000 12.58 0.00 0.00 2.90
1490 1532 0.666577 GAAGCGCTGTAACTCCGTGT 60.667 55.000 12.58 0.00 0.00 4.49
1491 1533 0.666274 TGAAGCGCTGTAACTCCGTG 60.666 55.000 12.58 0.00 0.00 4.94
1492 1534 0.032952 TTGAAGCGCTGTAACTCCGT 59.967 50.000 12.58 0.00 0.00 4.69
1531 1573 0.606604 AACACGCACGAATAGTCCCT 59.393 50.000 0.00 0.00 0.00 4.20
1540 1587 1.398739 ACAACATCAAAACACGCACGA 59.601 42.857 0.00 0.00 0.00 4.35
1542 1589 3.065019 AGACAACATCAAAACACGCAC 57.935 42.857 0.00 0.00 0.00 5.34
1554 1601 1.891150 ACGTCGGACCTAAGACAACAT 59.109 47.619 1.91 0.00 37.23 2.71
1576 1623 1.668419 AATGAATGCGGACAGTAGCC 58.332 50.000 0.00 0.00 0.00 3.93
1586 1633 6.479990 TCTGTAACCTGATCTAAATGAATGCG 59.520 38.462 0.00 0.00 0.00 4.73
1599 1646 2.578021 ACCAGCCAATCTGTAACCTGAT 59.422 45.455 0.00 0.00 41.25 2.90
1686 1734 6.907212 CGCACTATGTCCATTCTTTGATTAAC 59.093 38.462 0.00 0.00 0.00 2.01
1710 1758 4.108336 CAGATGACTTCCATGTGTAGTCG 58.892 47.826 12.72 0.00 40.52 4.18
1729 1777 7.546667 GGCTTGAAATGCATCTTTTATTTCAGA 59.453 33.333 0.00 0.00 45.81 3.27
1793 1841 1.416401 AGCGTCCAATCCGTCCATTAT 59.584 47.619 0.00 0.00 0.00 1.28
1795 1843 0.744414 CAGCGTCCAATCCGTCCATT 60.744 55.000 0.00 0.00 0.00 3.16
1979 2031 4.644685 AGAAGTGCAGCCAAACTAGAAAAA 59.355 37.500 0.00 0.00 0.00 1.94
2086 2138 8.516811 TTCTCGACAGAGTTCACTTAAAATAC 57.483 34.615 0.00 0.00 44.65 1.89
2088 2140 7.041984 GGTTTCTCGACAGAGTTCACTTAAAAT 60.042 37.037 0.00 0.00 44.65 1.82
2107 2162 6.551601 TCCTAGATATGGAGTTCAGGTTTCTC 59.448 42.308 0.00 0.00 0.00 2.87
2149 2204 2.408271 TGCTTGACTTAGCCATGAGG 57.592 50.000 0.00 0.00 40.49 3.86
2150 2205 4.005650 TCTTTGCTTGACTTAGCCATGAG 58.994 43.478 0.00 0.00 40.49 2.90
2151 2206 4.019792 TCTTTGCTTGACTTAGCCATGA 57.980 40.909 0.00 0.00 40.49 3.07
2152 2207 4.978083 ATCTTTGCTTGACTTAGCCATG 57.022 40.909 0.00 0.00 40.49 3.66
2153 2208 7.013083 CAGATTATCTTTGCTTGACTTAGCCAT 59.987 37.037 0.00 0.00 40.49 4.40
2154 2209 6.317140 CAGATTATCTTTGCTTGACTTAGCCA 59.683 38.462 0.00 0.00 40.49 4.75
2155 2210 6.540189 TCAGATTATCTTTGCTTGACTTAGCC 59.460 38.462 0.00 0.00 40.49 3.93
2156 2211 7.545362 TCAGATTATCTTTGCTTGACTTAGC 57.455 36.000 0.00 0.00 41.59 3.09
2193 2248 3.093574 CACGAGAGCATTTAAACGCATG 58.906 45.455 9.17 0.00 0.00 4.06
2276 2333 5.485708 AGCCTGTAGGTCAGATCTAAAGTTT 59.514 40.000 7.09 0.00 46.27 2.66
2283 2340 3.561143 CTGTAGCCTGTAGGTCAGATCT 58.439 50.000 11.49 0.00 46.27 2.75
2284 2341 2.035321 GCTGTAGCCTGTAGGTCAGATC 59.965 54.545 17.23 0.00 46.27 2.75
2323 2380 7.492344 AGGAACTGAAAAATACAACAGCAAAAG 59.508 33.333 0.00 0.00 37.18 2.27
2477 2534 1.075425 CTTGAGCTGCTCCGACTTCG 61.075 60.000 25.61 3.80 39.44 3.79
2602 2659 9.236691 CAAAATTGGCAATATGTATGTGTAGAC 57.763 33.333 14.05 0.00 0.00 2.59
2684 2741 3.365820 GCACAAGCAAACTGTCAATATGC 59.634 43.478 0.00 0.00 41.58 3.14
2709 2766 9.965902 AAGATTTGTAGAAGAATACAGTTCCAT 57.034 29.630 0.00 0.00 37.01 3.41
2710 2767 9.436957 GAAGATTTGTAGAAGAATACAGTTCCA 57.563 33.333 0.00 0.00 37.01 3.53
2711 2768 9.660180 AGAAGATTTGTAGAAGAATACAGTTCC 57.340 33.333 0.00 0.00 37.01 3.62
2827 2887 8.473016 CGCTTTTTATTGATACGTTCACAAAAA 58.527 29.630 18.26 18.26 36.78 1.94
2838 2898 8.667987 TTGAATGTGACGCTTTTTATTGATAC 57.332 30.769 0.00 0.00 0.00 2.24
2896 2958 5.237236 AGGTCCGTTCTTTTTCCTTGATA 57.763 39.130 0.00 0.00 0.00 2.15
2988 3050 5.303333 TGGTTTTTGGGAGAAGGTACAATTC 59.697 40.000 0.00 0.00 0.00 2.17
3048 3110 3.753294 ACGGAAGAACAAGACAGACAT 57.247 42.857 0.00 0.00 0.00 3.06
3050 3112 7.829378 AATATAACGGAAGAACAAGACAGAC 57.171 36.000 0.00 0.00 0.00 3.51
3100 3165 2.951642 CCTCAGCTTTGTTGTTTCTGGA 59.048 45.455 0.00 0.00 0.00 3.86
3192 3261 2.548057 GTGAGACGCCAATTTCAGAACA 59.452 45.455 0.00 0.00 0.00 3.18
3304 3373 2.916111 CGCTGCACAAACGAACTAATT 58.084 42.857 0.00 0.00 0.00 1.40
3347 3416 6.413818 CGAAACAAGTGACCATACAAAAGTTC 59.586 38.462 0.00 0.00 0.00 3.01
3360 3435 3.671716 ACCCCTAATCGAAACAAGTGAC 58.328 45.455 0.00 0.00 0.00 3.67
3383 3458 9.410556 AGTCAATTTAACATTAATGAGCAACAC 57.589 29.630 22.16 8.32 0.00 3.32
3405 3480 8.645814 TTATTCTACTACAAGTGAAGGAGTCA 57.354 34.615 0.00 0.00 0.00 3.41
3469 3548 2.251642 GGCGTCTGCGGTGAAAACT 61.252 57.895 0.00 0.00 44.10 2.66
3470 3549 2.054140 TTGGCGTCTGCGGTGAAAAC 62.054 55.000 0.00 0.00 44.10 2.43
3977 4145 8.021973 GCAGTTTAGAGAATAGCGCTACTTATA 58.978 37.037 21.49 7.07 0.00 0.98
4055 4223 7.218314 AGATCTGGGAAAGGTTCTATGAAAT 57.782 36.000 0.00 0.00 0.00 2.17
4273 4441 7.751768 TTCTTCCTCCTCTTCAATCTTTTTC 57.248 36.000 0.00 0.00 0.00 2.29
4338 4506 3.210358 ACAACACAAACACGAAACCAG 57.790 42.857 0.00 0.00 0.00 4.00
4351 4519 4.450976 AGAGAGCAACACATTACAACACA 58.549 39.130 0.00 0.00 0.00 3.72
4360 4528 4.460382 CCCATTTGTAAGAGAGCAACACAT 59.540 41.667 0.00 0.00 0.00 3.21
4390 4559 1.612442 AGGCGCCCCTGAGAAGTTA 60.612 57.895 26.15 0.00 40.94 2.24
4396 4565 3.922640 GCTAGAGGCGCCCCTGAG 61.923 72.222 26.15 16.63 43.12 3.35
4399 4568 3.157949 GAAGCTAGAGGCGCCCCT 61.158 66.667 26.15 21.52 46.74 4.79
4410 4579 1.238439 GCAAACAGGCACAGAAGCTA 58.762 50.000 0.00 0.00 34.17 3.32
4412 4581 1.370900 CGCAAACAGGCACAGAAGC 60.371 57.895 0.00 0.00 0.00 3.86
4447 4616 7.095187 CCCCTCTAATAATATTGTGCGAACTTC 60.095 40.741 0.00 0.00 0.00 3.01
4506 4675 2.818432 CCTCAAGAGTTGCTGCAGAAAT 59.182 45.455 20.43 8.25 0.00 2.17
4510 4679 1.874562 GCCTCAAGAGTTGCTGCAG 59.125 57.895 10.11 10.11 0.00 4.41
4563 4732 1.026182 CCAGCTGCCGCTATTTCACA 61.026 55.000 8.66 0.00 46.99 3.58
4564 4733 0.744414 TCCAGCTGCCGCTATTTCAC 60.744 55.000 8.66 0.00 46.99 3.18
4565 4734 0.462581 CTCCAGCTGCCGCTATTTCA 60.463 55.000 8.66 0.00 46.99 2.69
4566 4735 0.179073 TCTCCAGCTGCCGCTATTTC 60.179 55.000 8.66 0.00 46.99 2.17
4567 4736 0.179062 CTCTCCAGCTGCCGCTATTT 60.179 55.000 8.66 0.00 46.99 1.40
4568 4737 1.445095 CTCTCCAGCTGCCGCTATT 59.555 57.895 8.66 0.00 46.99 1.73
4569 4738 3.136750 CTCTCCAGCTGCCGCTAT 58.863 61.111 8.66 0.00 46.99 2.97
4570 4739 3.842923 GCTCTCCAGCTGCCGCTA 61.843 66.667 8.66 0.00 46.99 4.26
4611 4793 1.834263 GAGCAGAACCCTAGTCCATGT 59.166 52.381 0.00 0.00 0.00 3.21
4631 4813 3.120408 GCATCAAGACACAGCAACTACAG 60.120 47.826 0.00 0.00 0.00 2.74
4661 4843 4.759693 CCAATTGCCACTTGTAACAGTAGA 59.240 41.667 0.00 0.00 0.00 2.59
4685 4867 8.196378 AGTCTATGTAGGAAGAAAGAAAGTGT 57.804 34.615 0.00 0.00 0.00 3.55
4712 4894 4.612939 GCCAAAACGTCGCTCTTTTAGAAT 60.613 41.667 0.00 0.00 0.00 2.40
4713 4895 3.303526 GCCAAAACGTCGCTCTTTTAGAA 60.304 43.478 0.00 0.00 0.00 2.10
4714 4896 2.222445 GCCAAAACGTCGCTCTTTTAGA 59.778 45.455 0.00 0.00 0.00 2.10
4715 4897 2.223377 AGCCAAAACGTCGCTCTTTTAG 59.777 45.455 0.00 0.00 0.00 1.85
4716 4898 2.215196 AGCCAAAACGTCGCTCTTTTA 58.785 42.857 0.00 0.00 0.00 1.52
4717 4899 1.002792 GAGCCAAAACGTCGCTCTTTT 60.003 47.619 15.60 0.00 44.52 2.27
4718 4900 0.586802 GAGCCAAAACGTCGCTCTTT 59.413 50.000 15.60 0.00 44.52 2.52
4719 4901 1.228657 GGAGCCAAAACGTCGCTCTT 61.229 55.000 19.73 0.00 46.60 2.85
4720 4902 1.668151 GGAGCCAAAACGTCGCTCT 60.668 57.895 19.73 2.85 46.60 4.09
4721 4903 0.389426 TAGGAGCCAAAACGTCGCTC 60.389 55.000 14.90 14.90 46.67 5.03
4722 4904 0.389948 CTAGGAGCCAAAACGTCGCT 60.390 55.000 0.00 0.00 34.97 4.93
4723 4905 1.359459 CCTAGGAGCCAAAACGTCGC 61.359 60.000 1.05 0.00 0.00 5.19
4724 4906 0.037605 ACCTAGGAGCCAAAACGTCG 60.038 55.000 17.98 0.00 0.00 5.12
4725 4907 1.439679 CACCTAGGAGCCAAAACGTC 58.560 55.000 17.98 0.00 0.00 4.34
4726 4908 0.605589 GCACCTAGGAGCCAAAACGT 60.606 55.000 19.57 0.00 0.00 3.99
4727 4909 0.605319 TGCACCTAGGAGCCAAAACG 60.605 55.000 25.94 0.22 0.00 3.60
4728 4910 1.839424 ATGCACCTAGGAGCCAAAAC 58.161 50.000 25.94 0.85 0.00 2.43
4729 4911 3.554934 CATATGCACCTAGGAGCCAAAA 58.445 45.455 25.94 9.83 0.00 2.44
4730 4912 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
4731 4913 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
4732 4914 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
4733 4915 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
4744 4926 0.730265 TCGAAAACGGGTGCATATGC 59.270 50.000 21.09 21.09 42.50 3.14
4745 4927 3.479505 TTTCGAAAACGGGTGCATATG 57.520 42.857 8.44 0.00 0.00 1.78
4746 4928 4.636648 TGTATTTCGAAAACGGGTGCATAT 59.363 37.500 15.66 0.00 0.00 1.78
4747 4929 4.001652 TGTATTTCGAAAACGGGTGCATA 58.998 39.130 15.66 0.00 0.00 3.14
4748 4930 2.814919 TGTATTTCGAAAACGGGTGCAT 59.185 40.909 15.66 0.00 0.00 3.96
4749 4931 2.031857 GTGTATTTCGAAAACGGGTGCA 60.032 45.455 15.66 4.91 0.00 4.57
4750 4932 2.031857 TGTGTATTTCGAAAACGGGTGC 60.032 45.455 15.66 2.10 0.00 5.01
4751 4933 3.881780 TGTGTATTTCGAAAACGGGTG 57.118 42.857 15.66 0.00 0.00 4.61
4752 4934 5.441709 AAATGTGTATTTCGAAAACGGGT 57.558 34.783 15.66 0.00 30.85 5.28
4753 4935 5.985526 GAAATGTGTATTTCGAAAACGGG 57.014 39.130 15.66 0.00 41.81 5.28
4786 4968 5.883115 ACGTGGGATTTTTGTTCCAATTTTT 59.117 32.000 0.00 0.00 34.77 1.94
4787 4969 5.295540 CACGTGGGATTTTTGTTCCAATTTT 59.704 36.000 7.95 0.00 34.77 1.82
4788 4970 4.813697 CACGTGGGATTTTTGTTCCAATTT 59.186 37.500 7.95 0.00 34.77 1.82
4789 4971 4.141824 ACACGTGGGATTTTTGTTCCAATT 60.142 37.500 21.57 0.00 34.77 2.32
4790 4972 3.386402 ACACGTGGGATTTTTGTTCCAAT 59.614 39.130 21.57 0.00 34.77 3.16
4791 4973 2.761208 ACACGTGGGATTTTTGTTCCAA 59.239 40.909 21.57 0.00 34.77 3.53
4792 4974 2.379972 ACACGTGGGATTTTTGTTCCA 58.620 42.857 21.57 0.00 34.77 3.53
4793 4975 4.776795 ATACACGTGGGATTTTTGTTCC 57.223 40.909 21.57 0.00 0.00 3.62
4794 4976 6.492254 GGATATACACGTGGGATTTTTGTTC 58.508 40.000 21.57 2.71 0.00 3.18
4795 4977 5.065474 CGGATATACACGTGGGATTTTTGTT 59.935 40.000 21.57 0.00 0.00 2.83
4796 4978 4.573201 CGGATATACACGTGGGATTTTTGT 59.427 41.667 21.57 0.00 0.00 2.83
4797 4979 4.024387 CCGGATATACACGTGGGATTTTTG 60.024 45.833 21.57 3.09 0.00 2.44
4798 4980 4.131596 CCGGATATACACGTGGGATTTTT 58.868 43.478 21.57 0.00 0.00 1.94
4799 4981 3.388676 TCCGGATATACACGTGGGATTTT 59.611 43.478 21.57 0.00 0.00 1.82
4800 4982 2.967201 TCCGGATATACACGTGGGATTT 59.033 45.455 21.57 7.88 0.00 2.17
4801 4983 2.298163 GTCCGGATATACACGTGGGATT 59.702 50.000 21.57 0.32 0.00 3.01
4802 4984 1.891150 GTCCGGATATACACGTGGGAT 59.109 52.381 21.57 14.88 0.00 3.85
4803 4985 1.321474 GTCCGGATATACACGTGGGA 58.679 55.000 21.57 11.84 0.00 4.37
4804 4986 1.034356 TGTCCGGATATACACGTGGG 58.966 55.000 21.57 9.47 0.00 4.61
4805 4987 3.380479 AATGTCCGGATATACACGTGG 57.620 47.619 21.57 0.00 0.00 4.94
4806 4988 6.422701 ACATAAAATGTCCGGATATACACGTG 59.577 38.462 14.71 15.48 39.92 4.49
4807 4989 6.422701 CACATAAAATGTCCGGATATACACGT 59.577 38.462 14.71 5.84 42.70 4.49
4808 4990 6.617741 GCACATAAAATGTCCGGATATACACG 60.618 42.308 14.71 5.24 42.70 4.49
4809 4991 6.599437 GCACATAAAATGTCCGGATATACAC 58.401 40.000 14.71 0.00 42.70 2.90
4810 4992 5.407084 CGCACATAAAATGTCCGGATATACA 59.593 40.000 14.71 5.01 40.59 2.29
4811 4993 5.854157 CGCACATAAAATGTCCGGATATAC 58.146 41.667 14.71 0.00 40.59 1.47
4830 5012 4.101942 TCATCAAAACTTTGTGAACGCAC 58.898 39.130 2.30 0.00 45.35 5.34
4831 5013 4.362932 TCATCAAAACTTTGTGAACGCA 57.637 36.364 2.30 0.00 39.18 5.24
4832 5014 5.694674 TTTCATCAAAACTTTGTGAACGC 57.305 34.783 14.33 0.00 37.62 4.84
4833 5015 8.379161 TCATTTTTCATCAAAACTTTGTGAACG 58.621 29.630 14.33 0.00 37.18 3.95
4834 5016 9.476761 GTCATTTTTCATCAAAACTTTGTGAAC 57.523 29.630 14.33 5.36 37.18 3.18
4835 5017 8.379161 CGTCATTTTTCATCAAAACTTTGTGAA 58.621 29.630 12.26 12.26 37.18 3.18
4836 5018 7.543868 ACGTCATTTTTCATCAAAACTTTGTGA 59.456 29.630 2.30 3.54 37.18 3.58
4837 5019 7.674564 ACGTCATTTTTCATCAAAACTTTGTG 58.325 30.769 2.30 1.51 37.18 3.33
4838 5020 7.826260 ACGTCATTTTTCATCAAAACTTTGT 57.174 28.000 2.30 0.00 37.18 2.83
4839 5021 9.540431 AAAACGTCATTTTTCATCAAAACTTTG 57.460 25.926 0.00 0.00 37.18 2.77
4863 5045 4.464597 AGAAGCGGTAATTGGCCATAAAAA 59.535 37.500 6.09 0.00 0.00 1.94
4864 5046 4.020543 AGAAGCGGTAATTGGCCATAAAA 58.979 39.130 6.09 0.00 0.00 1.52
4865 5047 3.626930 AGAAGCGGTAATTGGCCATAAA 58.373 40.909 6.09 0.00 0.00 1.40
4866 5048 3.290948 AGAAGCGGTAATTGGCCATAA 57.709 42.857 6.09 0.00 0.00 1.90
4867 5049 4.425180 TTAGAAGCGGTAATTGGCCATA 57.575 40.909 6.09 0.00 0.00 2.74
4868 5050 3.290948 TTAGAAGCGGTAATTGGCCAT 57.709 42.857 6.09 0.00 0.00 4.40
4869 5051 2.791347 TTAGAAGCGGTAATTGGCCA 57.209 45.000 0.00 0.00 0.00 5.36
4870 5052 3.004419 GGATTTAGAAGCGGTAATTGGCC 59.996 47.826 0.00 0.00 0.00 5.36
4871 5053 3.630312 TGGATTTAGAAGCGGTAATTGGC 59.370 43.478 0.00 0.00 0.00 4.52
4872 5054 6.391227 AATGGATTTAGAAGCGGTAATTGG 57.609 37.500 0.00 0.00 0.00 3.16
4873 5055 8.190784 AGAAAATGGATTTAGAAGCGGTAATTG 58.809 33.333 0.00 0.00 0.00 2.32
4874 5056 8.190784 CAGAAAATGGATTTAGAAGCGGTAATT 58.809 33.333 0.00 0.00 0.00 1.40
4875 5057 7.682021 GCAGAAAATGGATTTAGAAGCGGTAAT 60.682 37.037 0.00 0.00 0.00 1.89
4876 5058 6.404293 GCAGAAAATGGATTTAGAAGCGGTAA 60.404 38.462 0.00 0.00 0.00 2.85
4877 5059 5.065988 GCAGAAAATGGATTTAGAAGCGGTA 59.934 40.000 0.00 0.00 0.00 4.02
4878 5060 4.142381 GCAGAAAATGGATTTAGAAGCGGT 60.142 41.667 0.00 0.00 0.00 5.68
4879 5061 4.142403 TGCAGAAAATGGATTTAGAAGCGG 60.142 41.667 0.00 0.00 0.00 5.52
4880 5062 4.985413 TGCAGAAAATGGATTTAGAAGCG 58.015 39.130 0.00 0.00 0.00 4.68
4881 5063 6.158598 TGTTGCAGAAAATGGATTTAGAAGC 58.841 36.000 0.00 0.00 0.00 3.86
4882 5064 8.592105 TTTGTTGCAGAAAATGGATTTAGAAG 57.408 30.769 0.00 0.00 0.00 2.85
4883 5065 8.954950 TTTTGTTGCAGAAAATGGATTTAGAA 57.045 26.923 2.46 0.00 0.00 2.10
4929 5113 0.038166 CTGCCTCTTTTACCAGCCCA 59.962 55.000 0.00 0.00 0.00 5.36
4945 5129 0.951040 ACGAAACTGGCTGTAGCTGC 60.951 55.000 0.00 0.00 41.70 5.25
4963 5147 1.802960 CAGCTGTCATGTGGAAGTGAC 59.197 52.381 5.25 0.00 43.81 3.67
4973 5157 5.526115 ACTTCATTTGTTTCAGCTGTCATG 58.474 37.500 14.67 8.13 0.00 3.07
4978 5162 4.114073 TGCAACTTCATTTGTTTCAGCTG 58.886 39.130 7.63 7.63 0.00 4.24
4981 5165 4.026310 GCACTGCAACTTCATTTGTTTCAG 60.026 41.667 0.00 0.00 41.80 3.02
5025 5210 3.842732 AATAACTGGCGTGGTTTTAGC 57.157 42.857 0.00 0.00 0.00 3.09
5036 5221 2.678336 CCTCTGTTCGGAAATAACTGGC 59.322 50.000 0.00 0.00 0.00 4.85
5075 5260 4.125703 GCATCACTCTCCTATGAAAGTGG 58.874 47.826 2.17 0.00 39.62 4.00
5087 5275 8.857216 CAAATCAAACATAAAAGCATCACTCTC 58.143 33.333 0.00 0.00 0.00 3.20
5088 5276 8.362639 ACAAATCAAACATAAAAGCATCACTCT 58.637 29.630 0.00 0.00 0.00 3.24
5089 5277 8.524870 ACAAATCAAACATAAAAGCATCACTC 57.475 30.769 0.00 0.00 0.00 3.51
5090 5278 9.979578 TTACAAATCAAACATAAAAGCATCACT 57.020 25.926 0.00 0.00 0.00 3.41
5094 5282 9.492973 AAGCTTACAAATCAAACATAAAAGCAT 57.507 25.926 0.00 0.00 39.33 3.79
5095 5283 8.885494 AAGCTTACAAATCAAACATAAAAGCA 57.115 26.923 0.00 0.00 39.33 3.91
5113 5301 5.969435 GCCATACGGTTCAAATAAAGCTTAC 59.031 40.000 0.00 0.00 33.28 2.34
5136 5324 8.430063 CAAGACAATTAAAGATCAAACACATGC 58.570 33.333 0.00 0.00 0.00 4.06
5152 5340 9.087871 TCCAAGATCAAAATTCCAAGACAATTA 57.912 29.630 0.00 0.00 0.00 1.40
5290 5506 7.366847 TCTCCTATATCTGGTTTTTCCTCTG 57.633 40.000 0.00 0.00 37.07 3.35
5312 5528 3.917300 AGAGATCCCCGATACAACTTCT 58.083 45.455 0.00 0.00 0.00 2.85
5332 5548 7.381766 TGGATTTCAGATGTGTTCATGTAAG 57.618 36.000 0.00 0.00 34.06 2.34
5405 5623 1.574428 CACCTCCAACGGCTTTTCG 59.426 57.895 0.00 0.00 0.00 3.46
5415 5633 0.615331 CAGCCTAAGAGCACCTCCAA 59.385 55.000 0.00 0.00 34.23 3.53
5470 5688 5.887214 TGCACCATGGAAGTAGTATGTAT 57.113 39.130 21.47 0.00 0.00 2.29
5473 5691 5.858381 ACTATGCACCATGGAAGTAGTATG 58.142 41.667 21.47 4.35 0.00 2.39
5500 5719 9.775539 AGGTCACTATGATACCACATAATAGAT 57.224 33.333 0.00 0.00 35.64 1.98
5509 5728 9.355215 CGATAAATAAGGTCACTATGATACCAC 57.645 37.037 0.00 0.00 35.64 4.16
5573 5792 8.727910 TGAGAGTCATGTTATGATACCGTATAC 58.272 37.037 0.00 0.00 42.04 1.47
5574 5793 8.857694 TGAGAGTCATGTTATGATACCGTATA 57.142 34.615 0.00 0.00 42.04 1.47
5579 5798 9.330063 TGATTTTGAGAGTCATGTTATGATACC 57.670 33.333 0.00 0.00 42.04 2.73
5588 5807 8.302438 GGAAAGAAATGATTTTGAGAGTCATGT 58.698 33.333 0.00 0.00 33.19 3.21
5594 5813 9.924650 AAATGAGGAAAGAAATGATTTTGAGAG 57.075 29.630 0.00 0.00 0.00 3.20
5595 5814 9.701098 CAAATGAGGAAAGAAATGATTTTGAGA 57.299 29.630 0.00 0.00 0.00 3.27
5601 5820 9.431887 CACAATCAAATGAGGAAAGAAATGATT 57.568 29.630 0.00 0.00 36.88 2.57
5602 5821 8.591072 ACACAATCAAATGAGGAAAGAAATGAT 58.409 29.630 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.