Multiple sequence alignment - TraesCS4B01G288800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G288800 chr4B 100.000 2498 0 0 1 2498 573522014 573519517 0.000000e+00 4614.0
1 TraesCS4B01G288800 chr4B 93.908 476 26 1 2026 2498 2408558 2409033 0.000000e+00 715.0
2 TraesCS4B01G288800 chr4B 93.908 476 26 1 2026 2498 58059395 58058920 0.000000e+00 715.0
3 TraesCS4B01G288800 chr4B 98.889 90 1 0 1 90 120846131 120846042 7.150000e-36 161.0
4 TraesCS4B01G288800 chr4B 94.175 103 5 1 1 103 539989153 539989254 3.330000e-34 156.0
5 TraesCS4B01G288800 chr4B 92.308 104 6 2 1 103 295968584 295968482 2.000000e-31 147.0
6 TraesCS4B01G288800 chr4D 93.876 1437 60 10 611 2026 459301973 459300544 0.000000e+00 2141.0
7 TraesCS4B01G288800 chr4A 90.323 1333 73 26 599 1904 9483834 9485137 0.000000e+00 1696.0
8 TraesCS4B01G288800 chr3B 95.513 468 21 0 2026 2493 679507762 679507295 0.000000e+00 749.0
9 TraesCS4B01G288800 chr3B 91.317 357 30 1 231 587 73819524 73819169 1.040000e-133 486.0
10 TraesCS4B01G288800 chr5B 95.329 471 19 1 2026 2493 684443724 684443254 0.000000e+00 745.0
11 TraesCS4B01G288800 chr5B 94.904 471 21 1 2026 2493 611696127 611696597 0.000000e+00 734.0
12 TraesCS4B01G288800 chr5B 98.876 89 1 0 1 89 190947824 190947736 2.570000e-35 159.0
13 TraesCS4B01G288800 chr5B 98.864 88 1 0 1 88 176517535 176517622 9.250000e-35 158.0
14 TraesCS4B01G288800 chr5B 91.589 107 6 3 1 105 671521312 671521207 7.200000e-31 145.0
15 TraesCS4B01G288800 chr2B 94.692 471 22 1 2026 2493 91496684 91497154 0.000000e+00 728.0
16 TraesCS4B01G288800 chr2B 94.130 477 22 4 2022 2493 673092517 673092042 0.000000e+00 721.0
17 TraesCS4B01G288800 chr2B 91.597 357 29 1 231 587 789491027 789491382 2.230000e-135 492.0
18 TraesCS4B01G288800 chr2B 95.918 147 6 0 84 230 727318681 727318535 3.210000e-59 239.0
19 TraesCS4B01G288800 chr1D 94.118 476 25 1 2026 2498 12417069 12417544 0.000000e+00 721.0
20 TraesCS4B01G288800 chr2D 93.920 477 26 1 2025 2498 102291353 102290877 0.000000e+00 717.0
21 TraesCS4B01G288800 chrUn 90.726 496 36 3 97 587 131957810 131957320 0.000000e+00 652.0
22 TraesCS4B01G288800 chr7D 87.103 504 61 1 84 587 102051579 102052078 3.610000e-158 568.0
23 TraesCS4B01G288800 chr7D 87.247 494 44 12 84 576 619015725 619015250 1.690000e-151 545.0
24 TraesCS4B01G288800 chr7D 91.061 358 31 1 231 587 70086509 70086866 1.340000e-132 483.0
25 TraesCS4B01G288800 chr7D 95.238 147 7 0 84 230 75726408 75726262 1.490000e-57 233.0
26 TraesCS4B01G288800 chr7D 95.238 147 7 0 84 230 596965413 596965267 1.490000e-57 233.0
27 TraesCS4B01G288800 chr1A 86.523 512 60 4 84 587 418520207 418519697 2.810000e-154 555.0
28 TraesCS4B01G288800 chr5D 85.185 513 60 5 84 587 158578329 158578834 1.710000e-141 512.0
29 TraesCS4B01G288800 chr6D 91.597 357 30 0 231 587 457792130 457792486 6.210000e-136 494.0
30 TraesCS4B01G288800 chr6D 87.209 258 23 9 84 336 246924985 246924733 4.070000e-73 285.0
31 TraesCS4B01G288800 chr7B 91.160 362 31 1 231 591 290790627 290790988 8.030000e-135 490.0
32 TraesCS4B01G288800 chr3D 84.375 512 62 16 84 587 540250171 540249670 1.040000e-133 486.0
33 TraesCS4B01G288800 chr6B 97.826 92 2 0 1 92 230564570 230564479 2.570000e-35 159.0
34 TraesCS4B01G288800 chr6B 98.876 89 1 0 1 89 237449743 237449655 2.570000e-35 159.0
35 TraesCS4B01G288800 chr6B 96.739 92 3 0 1 92 405581225 405581316 1.200000e-33 154.0
36 TraesCS4B01G288800 chr5A 94.118 34 2 0 1754 1787 326723754 326723787 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G288800 chr4B 573519517 573522014 2497 True 4614 4614 100.000 1 2498 1 chr4B.!!$R4 2497
1 TraesCS4B01G288800 chr4D 459300544 459301973 1429 True 2141 2141 93.876 611 2026 1 chr4D.!!$R1 1415
2 TraesCS4B01G288800 chr4A 9483834 9485137 1303 False 1696 1696 90.323 599 1904 1 chr4A.!!$F1 1305
3 TraesCS4B01G288800 chr1A 418519697 418520207 510 True 555 555 86.523 84 587 1 chr1A.!!$R1 503
4 TraesCS4B01G288800 chr5D 158578329 158578834 505 False 512 512 85.185 84 587 1 chr5D.!!$F1 503
5 TraesCS4B01G288800 chr3D 540249670 540250171 501 True 486 486 84.375 84 587 1 chr3D.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.030908 GTCTTAGAGTCCGGCCGATG 59.969 60.0 30.73 11.63 0.00 3.84 F
476 518 0.037697 TAACAGTGGTAGCGCAGGTG 60.038 55.0 11.47 0.00 40.22 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1486 0.237498 CTCACACGTACGAGTGCTCA 59.763 55.0 32.36 19.23 45.45 4.26 R
2151 2229 0.030235 TGTCGTCGACTTGAGTGGTG 59.970 55.0 24.75 0.00 33.15 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.344772 TCTTGTATCTTCATAGTCTTAGAGTCC 57.655 37.037 0.00 0.00 0.00 3.85
29 30 7.731882 TGTATCTTCATAGTCTTAGAGTCCG 57.268 40.000 0.00 0.00 0.00 4.79
30 31 6.711194 TGTATCTTCATAGTCTTAGAGTCCGG 59.289 42.308 0.00 0.00 0.00 5.14
31 32 3.884091 TCTTCATAGTCTTAGAGTCCGGC 59.116 47.826 0.00 0.00 0.00 6.13
32 33 2.584236 TCATAGTCTTAGAGTCCGGCC 58.416 52.381 0.00 0.00 0.00 6.13
33 34 1.267261 CATAGTCTTAGAGTCCGGCCG 59.733 57.143 21.04 21.04 0.00 6.13
34 35 0.543277 TAGTCTTAGAGTCCGGCCGA 59.457 55.000 30.73 10.38 0.00 5.54
35 36 0.106619 AGTCTTAGAGTCCGGCCGAT 60.107 55.000 30.73 12.65 0.00 4.18
36 37 0.030908 GTCTTAGAGTCCGGCCGATG 59.969 60.000 30.73 11.63 0.00 3.84
37 38 0.106868 TCTTAGAGTCCGGCCGATGA 60.107 55.000 30.73 14.33 0.00 2.92
38 39 0.962489 CTTAGAGTCCGGCCGATGAT 59.038 55.000 30.73 9.58 0.00 2.45
39 40 0.673985 TTAGAGTCCGGCCGATGATG 59.326 55.000 30.73 9.82 0.00 3.07
40 41 0.179001 TAGAGTCCGGCCGATGATGA 60.179 55.000 30.73 12.55 0.00 2.92
41 42 0.829602 AGAGTCCGGCCGATGATGAT 60.830 55.000 30.73 6.58 0.00 2.45
42 43 0.888619 GAGTCCGGCCGATGATGATA 59.111 55.000 30.73 0.00 0.00 2.15
43 44 0.891373 AGTCCGGCCGATGATGATAG 59.109 55.000 30.73 6.27 0.00 2.08
44 45 0.603569 GTCCGGCCGATGATGATAGT 59.396 55.000 30.73 0.00 0.00 2.12
45 46 0.888619 TCCGGCCGATGATGATAGTC 59.111 55.000 30.73 0.00 0.00 2.59
46 47 0.108615 CCGGCCGATGATGATAGTCC 60.109 60.000 30.73 0.00 0.00 3.85
47 48 0.456824 CGGCCGATGATGATAGTCCG 60.457 60.000 24.07 0.00 0.00 4.79
48 49 0.108615 GGCCGATGATGATAGTCCGG 60.109 60.000 0.00 0.00 39.88 5.14
49 50 3.425578 CCGATGATGATAGTCCGGC 57.574 57.895 0.00 0.00 0.00 6.13
50 51 0.891373 CCGATGATGATAGTCCGGCT 59.109 55.000 0.00 0.00 0.00 5.52
51 52 2.092323 CCGATGATGATAGTCCGGCTA 58.908 52.381 0.00 1.72 0.00 3.93
52 53 2.690497 CCGATGATGATAGTCCGGCTAT 59.310 50.000 15.50 15.50 42.75 2.97
64 65 3.557290 GGCTATCCGGACACCCCC 61.557 72.222 6.12 0.00 0.00 5.40
65 66 2.446036 GCTATCCGGACACCCCCT 60.446 66.667 6.12 0.00 0.00 4.79
66 67 1.152398 GCTATCCGGACACCCCCTA 60.152 63.158 6.12 0.00 0.00 3.53
67 68 1.186267 GCTATCCGGACACCCCCTAG 61.186 65.000 6.12 3.64 0.00 3.02
68 69 0.187851 CTATCCGGACACCCCCTAGT 59.812 60.000 6.12 0.00 0.00 2.57
69 70 0.186873 TATCCGGACACCCCCTAGTC 59.813 60.000 6.12 0.00 0.00 2.59
73 74 4.051932 GACACCCCCTAGTCCAGG 57.948 66.667 0.00 0.00 45.07 4.45
93 94 0.103208 ACTCCCTCAATGATCGTCGC 59.897 55.000 0.00 0.00 0.00 5.19
129 130 6.971602 AGAACTACATATGATGATCGTCGTT 58.028 36.000 14.74 8.15 0.00 3.85
164 165 6.971602 AGAACTACATATGATGATCGTCGTT 58.028 36.000 14.74 8.15 0.00 3.85
185 186 7.703621 GTCGTTGATATAACCTTGTACTGCTTA 59.296 37.037 0.00 0.00 0.00 3.09
205 206 6.483307 TGCTTAAGGATGCATGTTGACTATAC 59.517 38.462 2.46 0.00 33.94 1.47
267 301 3.393426 TTGGAACGGAGGGAGTACTAT 57.607 47.619 0.00 0.00 0.00 2.12
393 435 8.470657 TGATGAAAGATATAGCAGTAGTGAGT 57.529 34.615 0.42 0.00 0.00 3.41
400 442 2.516227 AGCAGTAGTGAGTGGCTAGA 57.484 50.000 0.42 0.00 0.00 2.43
412 454 5.932303 GTGAGTGGCTAGAAAATCACTACAA 59.068 40.000 14.71 0.42 40.13 2.41
430 472 7.066163 TCACTACAACTAACTAATAGTAGCGCA 59.934 37.037 11.47 0.00 44.22 6.09
455 497 3.561310 CCAGAAAAGCGCTGCTGATATAA 59.439 43.478 27.03 0.00 39.62 0.98
457 499 5.278169 CCAGAAAAGCGCTGCTGATATAATT 60.278 40.000 27.03 7.20 39.62 1.40
464 506 5.178252 AGCGCTGCTGATATAATTAACAGTG 59.822 40.000 10.39 0.00 37.57 3.66
472 514 6.517605 TGATATAATTAACAGTGGTAGCGCA 58.482 36.000 11.47 0.00 0.00 6.09
476 518 0.037697 TAACAGTGGTAGCGCAGGTG 60.038 55.000 11.47 0.00 40.22 4.00
507 549 5.860716 GCGCTACTACTAACAGTTAGTTGTT 59.139 40.000 32.09 21.21 45.44 2.83
513 555 4.519213 ACTAACAGTTAGTTGTTGCACCA 58.481 39.130 18.79 0.00 43.70 4.17
556 598 1.608590 GCTGTTGCTAGCCTCAAAACA 59.391 47.619 13.29 14.12 37.73 2.83
566 608 0.163788 CCTCAAAACACGCGCTACTG 59.836 55.000 5.73 0.00 0.00 2.74
571 613 0.038526 AAACACGCGCTACTGCTAGT 60.039 50.000 5.73 0.00 36.97 2.57
577 619 1.459592 CGCGCTACTGCTAGTGTTTTT 59.540 47.619 5.56 0.00 36.97 1.94
589 631 7.528996 TGCTAGTGTTTTTCCTAGTAGTACA 57.471 36.000 2.52 0.00 34.45 2.90
590 632 8.130671 TGCTAGTGTTTTTCCTAGTAGTACAT 57.869 34.615 2.52 0.00 34.45 2.29
591 633 9.246670 TGCTAGTGTTTTTCCTAGTAGTACATA 57.753 33.333 2.52 0.00 34.45 2.29
592 634 9.733219 GCTAGTGTTTTTCCTAGTAGTACATAG 57.267 37.037 2.52 2.07 34.45 2.23
593 635 9.733219 CTAGTGTTTTTCCTAGTAGTACATAGC 57.267 37.037 2.52 0.00 0.00 2.97
594 636 8.130671 AGTGTTTTTCCTAGTAGTACATAGCA 57.869 34.615 2.52 0.00 0.00 3.49
595 637 8.591072 AGTGTTTTTCCTAGTAGTACATAGCAA 58.409 33.333 2.52 0.00 0.00 3.91
596 638 8.654215 GTGTTTTTCCTAGTAGTACATAGCAAC 58.346 37.037 2.52 0.00 0.00 4.17
597 639 7.543172 TGTTTTTCCTAGTAGTACATAGCAACG 59.457 37.037 2.52 0.00 0.00 4.10
614 656 0.391263 ACGAGAAGAAATGGGCGGTC 60.391 55.000 0.00 0.00 0.00 4.79
638 680 1.376424 CACTGCCCTACACAGCCAG 60.376 63.158 0.00 0.00 38.79 4.85
671 713 1.753930 AGATCATGGACGCATGCAAA 58.246 45.000 19.57 0.00 32.87 3.68
672 714 2.093890 AGATCATGGACGCATGCAAAA 58.906 42.857 19.57 0.00 32.87 2.44
766 809 2.528041 ATCGCCTCCGGAAATTAGAC 57.472 50.000 5.23 0.00 34.56 2.59
933 986 2.583593 GGCGCTAGCTTCGGACTG 60.584 66.667 13.93 0.00 44.37 3.51
970 1023 1.003866 CTTTGCCCGCGCTATAAAGAC 60.004 52.381 5.56 0.00 30.72 3.01
1269 1322 4.593864 GAGATGGAGCGGCCGGTC 62.594 72.222 41.76 41.76 40.66 4.79
1399 1452 1.537397 AGCACCTGGAAGCTCCTCA 60.537 57.895 11.55 0.00 36.00 3.86
1419 1472 1.427592 GCTTCAAGGCGCTCTAGCTG 61.428 60.000 7.64 0.00 39.32 4.24
1433 1486 2.561467 TAGCTGCATGCATGGCCACT 62.561 55.000 27.34 18.79 45.94 4.00
1458 1511 1.878088 ACTCGTACGTGTGAGTGTGAT 59.122 47.619 21.02 0.00 43.52 3.06
1554 1618 6.523840 ACTGGTACACGTCCTTTAATTTGTA 58.476 36.000 0.00 0.00 0.00 2.41
1557 1621 6.204495 TGGTACACGTCCTTTAATTTGTAACC 59.796 38.462 0.00 0.00 0.00 2.85
1560 1624 3.189080 ACGTCCTTTAATTTGTAACCCGC 59.811 43.478 0.00 0.00 0.00 6.13
1615 1680 0.179121 CACACACTAGCGCCGGAATA 60.179 55.000 5.05 0.00 0.00 1.75
1616 1681 0.533491 ACACACTAGCGCCGGAATAA 59.467 50.000 5.05 0.00 0.00 1.40
1617 1682 1.209128 CACACTAGCGCCGGAATAAG 58.791 55.000 5.05 0.00 0.00 1.73
1618 1683 0.822164 ACACTAGCGCCGGAATAAGT 59.178 50.000 5.05 0.00 0.00 2.24
1772 1837 6.507900 TCAAGCGTCAAATTTTTAACCATGA 58.492 32.000 0.00 0.00 0.00 3.07
1849 1918 6.880529 TGATAAGCATGTCAAATCTGTCTCAA 59.119 34.615 0.00 0.00 0.00 3.02
1854 1923 8.289939 AGCATGTCAAATCTGTCTCAATTTAT 57.710 30.769 0.00 0.00 0.00 1.40
1855 1924 8.746530 AGCATGTCAAATCTGTCTCAATTTATT 58.253 29.630 0.00 0.00 0.00 1.40
1856 1925 9.362539 GCATGTCAAATCTGTCTCAATTTATTT 57.637 29.630 0.00 0.00 0.00 1.40
1898 1972 3.185594 TCGTGCTCGTGAACTAAATTTGG 59.814 43.478 8.17 0.00 38.33 3.28
1967 2045 7.690952 TTTGCATTACCGTTTTTCTATACCT 57.309 32.000 0.00 0.00 0.00 3.08
2026 2104 3.019564 GCATTGGTAGGAGATTGTGCTT 58.980 45.455 0.00 0.00 0.00 3.91
2027 2105 3.445096 GCATTGGTAGGAGATTGTGCTTT 59.555 43.478 0.00 0.00 0.00 3.51
2028 2106 4.082026 GCATTGGTAGGAGATTGTGCTTTT 60.082 41.667 0.00 0.00 0.00 2.27
2029 2107 5.567423 GCATTGGTAGGAGATTGTGCTTTTT 60.567 40.000 0.00 0.00 0.00 1.94
2053 2131 4.400961 GCAACCGGCAGGAGCTCT 62.401 66.667 14.64 0.00 43.97 4.09
2054 2132 2.435586 CAACCGGCAGGAGCTCTG 60.436 66.667 14.64 10.92 46.03 3.35
2062 2140 3.639099 CAGGAGCTCTGCCTTTTCA 57.361 52.632 14.64 0.00 36.60 2.69
2063 2141 2.125773 CAGGAGCTCTGCCTTTTCAT 57.874 50.000 14.64 0.00 36.60 2.57
2064 2142 2.444421 CAGGAGCTCTGCCTTTTCATT 58.556 47.619 14.64 0.00 36.60 2.57
2065 2143 3.614092 CAGGAGCTCTGCCTTTTCATTA 58.386 45.455 14.64 0.00 36.60 1.90
2066 2144 4.012374 CAGGAGCTCTGCCTTTTCATTAA 58.988 43.478 14.64 0.00 36.60 1.40
2067 2145 4.096081 CAGGAGCTCTGCCTTTTCATTAAG 59.904 45.833 14.64 0.00 36.60 1.85
2068 2146 4.018960 AGGAGCTCTGCCTTTTCATTAAGA 60.019 41.667 14.64 0.00 29.44 2.10
2069 2147 4.702131 GGAGCTCTGCCTTTTCATTAAGAA 59.298 41.667 14.64 0.00 0.00 2.52
2070 2148 5.163673 GGAGCTCTGCCTTTTCATTAAGAAG 60.164 44.000 14.64 0.00 37.57 2.85
2071 2149 5.564550 AGCTCTGCCTTTTCATTAAGAAGA 58.435 37.500 0.00 0.00 37.57 2.87
2072 2150 5.647225 AGCTCTGCCTTTTCATTAAGAAGAG 59.353 40.000 0.00 0.00 38.00 2.85
2073 2151 5.645497 GCTCTGCCTTTTCATTAAGAAGAGA 59.355 40.000 14.70 0.00 40.05 3.10
2074 2152 6.150140 GCTCTGCCTTTTCATTAAGAAGAGAA 59.850 38.462 14.70 0.00 40.05 2.87
2075 2153 7.148103 GCTCTGCCTTTTCATTAAGAAGAGAAT 60.148 37.037 14.70 0.00 40.05 2.40
2076 2154 8.641498 TCTGCCTTTTCATTAAGAAGAGAATT 57.359 30.769 0.00 0.00 40.05 2.17
2077 2155 8.517878 TCTGCCTTTTCATTAAGAAGAGAATTG 58.482 33.333 0.00 0.00 40.05 2.32
2078 2156 8.408043 TGCCTTTTCATTAAGAAGAGAATTGA 57.592 30.769 0.00 0.00 40.05 2.57
2079 2157 8.299570 TGCCTTTTCATTAAGAAGAGAATTGAC 58.700 33.333 0.00 0.00 40.05 3.18
2080 2158 7.757173 GCCTTTTCATTAAGAAGAGAATTGACC 59.243 37.037 0.00 0.00 40.05 4.02
2081 2159 8.796475 CCTTTTCATTAAGAAGAGAATTGACCA 58.204 33.333 0.00 0.00 40.05 4.02
2082 2160 9.837525 CTTTTCATTAAGAAGAGAATTGACCAG 57.162 33.333 0.00 0.00 40.05 4.00
2083 2161 8.924511 TTTCATTAAGAAGAGAATTGACCAGT 57.075 30.769 0.00 0.00 37.57 4.00
2084 2162 8.924511 TTCATTAAGAAGAGAATTGACCAGTT 57.075 30.769 0.00 0.00 0.00 3.16
2085 2163 8.924511 TCATTAAGAAGAGAATTGACCAGTTT 57.075 30.769 0.00 0.00 0.00 2.66
2091 2169 9.454859 AAGAAGAGAATTGACCAGTTTATAAGG 57.545 33.333 0.00 0.00 0.00 2.69
2092 2170 8.826765 AGAAGAGAATTGACCAGTTTATAAGGA 58.173 33.333 0.00 0.00 0.00 3.36
2093 2171 9.449719 GAAGAGAATTGACCAGTTTATAAGGAA 57.550 33.333 0.00 0.00 0.00 3.36
2094 2172 9.807921 AAGAGAATTGACCAGTTTATAAGGAAA 57.192 29.630 0.00 0.00 0.00 3.13
2095 2173 9.807921 AGAGAATTGACCAGTTTATAAGGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
2096 2174 9.841880 GAGAATTGACCAGTTTATAAGGAAAAC 57.158 33.333 0.00 0.00 37.14 2.43
2097 2175 9.588096 AGAATTGACCAGTTTATAAGGAAAACT 57.412 29.630 0.00 0.00 45.64 2.66
2103 2181 4.913784 AGTTTATAAGGAAAACTGGCCGA 58.086 39.130 0.00 0.00 43.66 5.54
2104 2182 5.318630 AGTTTATAAGGAAAACTGGCCGAA 58.681 37.500 0.00 0.00 43.66 4.30
2105 2183 5.771165 AGTTTATAAGGAAAACTGGCCGAAA 59.229 36.000 0.00 0.00 43.66 3.46
2106 2184 6.265876 AGTTTATAAGGAAAACTGGCCGAAAA 59.734 34.615 0.00 0.00 43.66 2.29
2107 2185 2.882927 AAGGAAAACTGGCCGAAAAC 57.117 45.000 0.00 0.00 0.00 2.43
2108 2186 1.037493 AGGAAAACTGGCCGAAAACC 58.963 50.000 0.00 0.00 0.00 3.27
2109 2187 0.318360 GGAAAACTGGCCGAAAACCG 60.318 55.000 0.00 0.00 38.18 4.44
2110 2188 0.664224 GAAAACTGGCCGAAAACCGA 59.336 50.000 0.00 0.00 41.76 4.69
2111 2189 1.268625 GAAAACTGGCCGAAAACCGAT 59.731 47.619 0.00 0.00 41.76 4.18
2112 2190 2.188062 AAACTGGCCGAAAACCGATA 57.812 45.000 0.00 0.00 41.76 2.92
2113 2191 1.445871 AACTGGCCGAAAACCGATAC 58.554 50.000 0.00 0.00 41.76 2.24
2114 2192 0.322322 ACTGGCCGAAAACCGATACA 59.678 50.000 0.00 0.00 41.76 2.29
2115 2193 1.065709 ACTGGCCGAAAACCGATACAT 60.066 47.619 0.00 0.00 41.76 2.29
2116 2194 1.597663 CTGGCCGAAAACCGATACATC 59.402 52.381 0.00 0.00 41.76 3.06
2117 2195 1.208535 TGGCCGAAAACCGATACATCT 59.791 47.619 0.00 0.00 41.76 2.90
2118 2196 1.597663 GGCCGAAAACCGATACATCTG 59.402 52.381 0.00 0.00 41.76 2.90
2119 2197 1.003866 GCCGAAAACCGATACATCTGC 60.004 52.381 0.00 0.00 41.76 4.26
2120 2198 1.597663 CCGAAAACCGATACATCTGCC 59.402 52.381 0.00 0.00 41.76 4.85
2121 2199 2.276201 CGAAAACCGATACATCTGCCA 58.724 47.619 0.00 0.00 41.76 4.92
2122 2200 2.872245 CGAAAACCGATACATCTGCCAT 59.128 45.455 0.00 0.00 41.76 4.40
2123 2201 4.055360 CGAAAACCGATACATCTGCCATA 58.945 43.478 0.00 0.00 41.76 2.74
2124 2202 4.084537 CGAAAACCGATACATCTGCCATAC 60.085 45.833 0.00 0.00 41.76 2.39
2125 2203 4.415881 AAACCGATACATCTGCCATACA 57.584 40.909 0.00 0.00 0.00 2.29
2126 2204 3.386768 ACCGATACATCTGCCATACAC 57.613 47.619 0.00 0.00 0.00 2.90
2127 2205 2.288213 ACCGATACATCTGCCATACACG 60.288 50.000 0.00 0.00 0.00 4.49
2128 2206 1.721389 CGATACATCTGCCATACACGC 59.279 52.381 0.00 0.00 0.00 5.34
2129 2207 2.754472 GATACATCTGCCATACACGCA 58.246 47.619 0.00 0.00 34.41 5.24
2130 2208 1.934589 TACATCTGCCATACACGCAC 58.065 50.000 0.00 0.00 31.61 5.34
2131 2209 0.036483 ACATCTGCCATACACGCACA 60.036 50.000 0.00 0.00 31.61 4.57
2132 2210 0.374758 CATCTGCCATACACGCACAC 59.625 55.000 0.00 0.00 31.61 3.82
2134 2212 3.367051 CTGCCATACACGCACACGC 62.367 63.158 0.00 0.00 45.53 5.34
2135 2213 4.160635 GCCATACACGCACACGCC 62.161 66.667 0.00 0.00 45.53 5.68
2136 2214 2.740440 CCATACACGCACACGCCA 60.740 61.111 0.00 0.00 45.53 5.69
2137 2215 2.739704 CCATACACGCACACGCCAG 61.740 63.158 0.00 0.00 45.53 4.85
2138 2216 3.118454 ATACACGCACACGCCAGC 61.118 61.111 0.00 0.00 45.53 4.85
2158 2236 3.857854 CGATGCTGCGCACCACTC 61.858 66.667 5.66 5.58 43.04 3.51
2159 2237 2.743538 GATGCTGCGCACCACTCA 60.744 61.111 5.66 0.00 43.04 3.41
2160 2238 2.281692 ATGCTGCGCACCACTCAA 60.282 55.556 5.66 0.00 43.04 3.02
2161 2239 2.249557 GATGCTGCGCACCACTCAAG 62.250 60.000 5.66 0.00 43.04 3.02
2162 2240 2.974698 GCTGCGCACCACTCAAGT 60.975 61.111 5.66 0.00 0.00 3.16
2163 2241 2.959357 GCTGCGCACCACTCAAGTC 61.959 63.158 5.66 0.00 0.00 3.01
2164 2242 2.661537 TGCGCACCACTCAAGTCG 60.662 61.111 5.66 0.00 0.00 4.18
2165 2243 2.355837 GCGCACCACTCAAGTCGA 60.356 61.111 0.30 0.00 0.00 4.20
2166 2244 2.658707 GCGCACCACTCAAGTCGAC 61.659 63.158 7.70 7.70 0.00 4.20
2167 2245 2.365068 CGCACCACTCAAGTCGACG 61.365 63.158 10.46 0.00 0.00 5.12
2168 2246 1.007734 GCACCACTCAAGTCGACGA 60.008 57.895 10.46 1.09 0.00 4.20
2169 2247 1.276145 GCACCACTCAAGTCGACGAC 61.276 60.000 20.25 20.25 0.00 4.34
2170 2248 0.030235 CACCACTCAAGTCGACGACA 59.970 55.000 28.31 8.47 34.60 4.35
2171 2249 0.030369 ACCACTCAAGTCGACGACAC 59.970 55.000 28.31 4.59 34.60 3.67
2172 2250 0.311165 CCACTCAAGTCGACGACACT 59.689 55.000 28.31 13.22 34.60 3.55
2173 2251 1.399572 CACTCAAGTCGACGACACTG 58.600 55.000 28.31 23.02 34.60 3.66
2174 2252 1.022735 ACTCAAGTCGACGACACTGT 58.977 50.000 28.31 17.62 34.60 3.55
2175 2253 1.002684 ACTCAAGTCGACGACACTGTC 60.003 52.381 28.31 1.61 34.60 3.51
2176 2254 1.002792 CTCAAGTCGACGACACTGTCA 60.003 52.381 28.31 10.15 38.84 3.58
2177 2255 1.121240 CAAGTCGACGACACTGTCAC 58.879 55.000 28.31 0.70 38.84 3.67
2178 2256 0.030369 AAGTCGACGACACTGTCACC 59.970 55.000 28.31 0.00 38.84 4.02
2179 2257 1.371389 GTCGACGACACTGTCACCC 60.371 63.158 22.66 0.00 38.84 4.61
2180 2258 1.824760 TCGACGACACTGTCACCCA 60.825 57.895 9.84 0.00 38.84 4.51
2181 2259 1.066752 CGACGACACTGTCACCCAA 59.933 57.895 9.84 0.00 38.84 4.12
2182 2260 0.939577 CGACGACACTGTCACCCAAG 60.940 60.000 9.84 0.00 38.84 3.61
2183 2261 0.104304 GACGACACTGTCACCCAAGT 59.896 55.000 9.84 0.00 38.75 3.16
2184 2262 0.179084 ACGACACTGTCACCCAAGTG 60.179 55.000 9.84 1.41 46.00 3.16
2194 2272 2.050269 ACCCAAGTGACCAGAGACG 58.950 57.895 0.00 0.00 0.00 4.18
2195 2273 0.469331 ACCCAAGTGACCAGAGACGA 60.469 55.000 0.00 0.00 0.00 4.20
2196 2274 0.038159 CCCAAGTGACCAGAGACGAC 60.038 60.000 0.00 0.00 0.00 4.34
2197 2275 0.673985 CCAAGTGACCAGAGACGACA 59.326 55.000 0.00 0.00 0.00 4.35
2198 2276 1.603172 CCAAGTGACCAGAGACGACAC 60.603 57.143 0.00 0.00 0.00 3.67
2199 2277 0.674534 AAGTGACCAGAGACGACACC 59.325 55.000 0.00 0.00 32.76 4.16
2200 2278 1.179814 AGTGACCAGAGACGACACCC 61.180 60.000 0.00 0.00 32.76 4.61
2201 2279 1.906824 TGACCAGAGACGACACCCC 60.907 63.158 0.00 0.00 0.00 4.95
2202 2280 1.906824 GACCAGAGACGACACCCCA 60.907 63.158 0.00 0.00 0.00 4.96
2203 2281 2.156051 GACCAGAGACGACACCCCAC 62.156 65.000 0.00 0.00 0.00 4.61
2204 2282 2.207229 CCAGAGACGACACCCCACA 61.207 63.158 0.00 0.00 0.00 4.17
2205 2283 1.745890 CAGAGACGACACCCCACAA 59.254 57.895 0.00 0.00 0.00 3.33
2206 2284 0.600255 CAGAGACGACACCCCACAAC 60.600 60.000 0.00 0.00 0.00 3.32
2207 2285 1.046472 AGAGACGACACCCCACAACA 61.046 55.000 0.00 0.00 0.00 3.33
2208 2286 0.600255 GAGACGACACCCCACAACAG 60.600 60.000 0.00 0.00 0.00 3.16
2209 2287 1.046472 AGACGACACCCCACAACAGA 61.046 55.000 0.00 0.00 0.00 3.41
2210 2288 0.179067 GACGACACCCCACAACAGAA 60.179 55.000 0.00 0.00 0.00 3.02
2211 2289 0.463116 ACGACACCCCACAACAGAAC 60.463 55.000 0.00 0.00 0.00 3.01
2212 2290 0.462937 CGACACCCCACAACAGAACA 60.463 55.000 0.00 0.00 0.00 3.18
2213 2291 1.021968 GACACCCCACAACAGAACAC 58.978 55.000 0.00 0.00 0.00 3.32
2214 2292 0.623723 ACACCCCACAACAGAACACT 59.376 50.000 0.00 0.00 0.00 3.55
2215 2293 1.024271 CACCCCACAACAGAACACTG 58.976 55.000 0.00 0.00 37.63 3.66
2216 2294 0.106719 ACCCCACAACAGAACACTGG 60.107 55.000 0.00 0.00 36.12 4.00
2217 2295 0.823356 CCCCACAACAGAACACTGGG 60.823 60.000 0.00 0.00 41.31 4.45
2218 2296 1.455383 CCCACAACAGAACACTGGGC 61.455 60.000 0.00 0.00 35.36 5.36
2219 2297 0.466189 CCACAACAGAACACTGGGCT 60.466 55.000 0.00 0.00 36.12 5.19
2220 2298 1.392589 CACAACAGAACACTGGGCTT 58.607 50.000 0.00 0.00 36.12 4.35
2221 2299 1.334869 CACAACAGAACACTGGGCTTC 59.665 52.381 0.00 0.00 36.12 3.86
2222 2300 1.064758 ACAACAGAACACTGGGCTTCA 60.065 47.619 0.00 0.00 36.12 3.02
2224 2302 1.131638 ACAGAACACTGGGCTTCAGA 58.868 50.000 13.08 0.00 46.18 3.27
2225 2303 1.071385 ACAGAACACTGGGCTTCAGAG 59.929 52.381 13.08 8.52 46.18 3.35
2226 2304 0.036022 AGAACACTGGGCTTCAGAGC 59.964 55.000 13.08 0.00 46.18 4.09
2243 2321 4.147449 CCGCTGCTCCGACATCCA 62.147 66.667 0.00 0.00 0.00 3.41
2244 2322 2.887568 CGCTGCTCCGACATCCAC 60.888 66.667 0.00 0.00 0.00 4.02
2245 2323 2.265739 GCTGCTCCGACATCCACA 59.734 61.111 0.00 0.00 0.00 4.17
2246 2324 2.103042 GCTGCTCCGACATCCACAC 61.103 63.158 0.00 0.00 0.00 3.82
2247 2325 1.448540 CTGCTCCGACATCCACACC 60.449 63.158 0.00 0.00 0.00 4.16
2248 2326 2.509336 GCTCCGACATCCACACCG 60.509 66.667 0.00 0.00 0.00 4.94
2249 2327 2.184322 CTCCGACATCCACACCGG 59.816 66.667 0.00 0.00 43.02 5.28
2250 2328 4.077184 TCCGACATCCACACCGGC 62.077 66.667 0.00 0.00 41.55 6.13
2253 2331 4.796495 GACATCCACACCGGCCCC 62.796 72.222 0.00 0.00 33.14 5.80
2274 2352 4.394712 GCCACGCACCAGCCTAGT 62.395 66.667 0.00 0.00 37.52 2.57
2275 2353 2.125512 CCACGCACCAGCCTAGTC 60.126 66.667 0.00 0.00 37.52 2.59
2276 2354 2.507102 CACGCACCAGCCTAGTCG 60.507 66.667 0.00 0.00 37.52 4.18
2277 2355 2.675423 ACGCACCAGCCTAGTCGA 60.675 61.111 0.00 0.00 37.52 4.20
2278 2356 2.052690 ACGCACCAGCCTAGTCGAT 61.053 57.895 0.00 0.00 37.52 3.59
2279 2357 1.589993 CGCACCAGCCTAGTCGATG 60.590 63.158 0.00 0.00 37.52 3.84
2280 2358 1.227380 GCACCAGCCTAGTCGATGG 60.227 63.158 2.14 2.14 38.83 3.51
2285 2363 2.336809 GCCTAGTCGATGGCTCCG 59.663 66.667 16.41 0.00 45.26 4.63
2286 2364 2.336809 CCTAGTCGATGGCTCCGC 59.663 66.667 0.00 0.00 0.00 5.54
2314 2392 4.511838 GCCAAAGCCAACACCCTA 57.488 55.556 0.00 0.00 0.00 3.53
2315 2393 2.976099 GCCAAAGCCAACACCCTAT 58.024 52.632 0.00 0.00 0.00 2.57
2316 2394 0.532115 GCCAAAGCCAACACCCTATG 59.468 55.000 0.00 0.00 0.00 2.23
2317 2395 0.532115 CCAAAGCCAACACCCTATGC 59.468 55.000 0.00 0.00 0.00 3.14
2318 2396 1.255882 CAAAGCCAACACCCTATGCA 58.744 50.000 0.00 0.00 0.00 3.96
2319 2397 1.067635 CAAAGCCAACACCCTATGCAC 60.068 52.381 0.00 0.00 0.00 4.57
2320 2398 0.112218 AAGCCAACACCCTATGCACA 59.888 50.000 0.00 0.00 0.00 4.57
2321 2399 0.609131 AGCCAACACCCTATGCACAC 60.609 55.000 0.00 0.00 0.00 3.82
2322 2400 1.922135 GCCAACACCCTATGCACACG 61.922 60.000 0.00 0.00 0.00 4.49
2323 2401 0.321210 CCAACACCCTATGCACACGA 60.321 55.000 0.00 0.00 0.00 4.35
2324 2402 1.078709 CAACACCCTATGCACACGAG 58.921 55.000 0.00 0.00 0.00 4.18
2325 2403 0.973632 AACACCCTATGCACACGAGA 59.026 50.000 0.00 0.00 0.00 4.04
2326 2404 1.195115 ACACCCTATGCACACGAGAT 58.805 50.000 0.00 0.00 0.00 2.75
2327 2405 2.384828 ACACCCTATGCACACGAGATA 58.615 47.619 0.00 0.00 0.00 1.98
2328 2406 2.965831 ACACCCTATGCACACGAGATAT 59.034 45.455 0.00 0.00 0.00 1.63
2329 2407 3.005897 ACACCCTATGCACACGAGATATC 59.994 47.826 0.00 0.00 0.00 1.63
2330 2408 2.563179 ACCCTATGCACACGAGATATCC 59.437 50.000 0.00 0.00 0.00 2.59
2331 2409 2.416027 CCCTATGCACACGAGATATCCG 60.416 54.545 10.77 10.77 0.00 4.18
2332 2410 2.416027 CCTATGCACACGAGATATCCGG 60.416 54.545 15.13 0.00 0.00 5.14
2333 2411 0.319900 ATGCACACGAGATATCCGGC 60.320 55.000 15.13 10.53 0.00 6.13
2334 2412 2.016704 GCACACGAGATATCCGGCG 61.017 63.158 15.13 0.00 0.00 6.46
2335 2413 2.016704 CACACGAGATATCCGGCGC 61.017 63.158 0.00 0.00 0.00 6.53
2336 2414 2.430921 CACGAGATATCCGGCGCC 60.431 66.667 19.07 19.07 0.00 6.53
2337 2415 4.039357 ACGAGATATCCGGCGCCG 62.039 66.667 41.00 41.00 39.44 6.46
2354 2432 4.681978 GCCGCACCGACTTCCACT 62.682 66.667 0.00 0.00 0.00 4.00
2355 2433 2.432628 CCGCACCGACTTCCACTC 60.433 66.667 0.00 0.00 0.00 3.51
2356 2434 2.432628 CGCACCGACTTCCACTCC 60.433 66.667 0.00 0.00 0.00 3.85
2357 2435 2.432628 GCACCGACTTCCACTCCG 60.433 66.667 0.00 0.00 0.00 4.63
2358 2436 2.261671 CACCGACTTCCACTCCGG 59.738 66.667 0.00 0.00 46.65 5.14
2359 2437 3.692406 ACCGACTTCCACTCCGGC 61.692 66.667 0.00 0.00 45.29 6.13
2360 2438 4.452733 CCGACTTCCACTCCGGCC 62.453 72.222 0.00 0.00 35.29 6.13
2361 2439 4.452733 CGACTTCCACTCCGGCCC 62.453 72.222 0.00 0.00 33.14 5.80
2362 2440 4.097361 GACTTCCACTCCGGCCCC 62.097 72.222 0.00 0.00 33.14 5.80
2380 2458 3.637273 GAGGCCACGAACCCACCT 61.637 66.667 5.01 0.00 0.00 4.00
2381 2459 2.203877 AGGCCACGAACCCACCTA 60.204 61.111 5.01 0.00 0.00 3.08
2382 2460 2.240162 GAGGCCACGAACCCACCTAG 62.240 65.000 5.01 0.00 0.00 3.02
2383 2461 2.590114 GGCCACGAACCCACCTAGT 61.590 63.158 0.00 0.00 0.00 2.57
2384 2462 1.079336 GCCACGAACCCACCTAGTC 60.079 63.158 0.00 0.00 0.00 2.59
2385 2463 1.214589 CCACGAACCCACCTAGTCG 59.785 63.158 0.00 0.00 0.00 4.18
2386 2464 1.246056 CCACGAACCCACCTAGTCGA 61.246 60.000 5.32 0.00 0.00 4.20
2387 2465 0.815734 CACGAACCCACCTAGTCGAT 59.184 55.000 5.32 0.00 0.00 3.59
2388 2466 0.815734 ACGAACCCACCTAGTCGATG 59.184 55.000 5.32 0.00 0.00 3.84
2389 2467 1.100510 CGAACCCACCTAGTCGATGA 58.899 55.000 0.00 0.00 0.00 2.92
2390 2468 1.202268 CGAACCCACCTAGTCGATGAC 60.202 57.143 0.00 0.00 0.00 3.06
2391 2469 1.136500 GAACCCACCTAGTCGATGACC 59.864 57.143 0.00 0.00 32.18 4.02
2392 2470 0.040646 ACCCACCTAGTCGATGACCA 59.959 55.000 0.00 0.00 32.18 4.02
2393 2471 1.343075 ACCCACCTAGTCGATGACCAT 60.343 52.381 0.00 0.00 32.18 3.55
2394 2472 1.069204 CCCACCTAGTCGATGACCATG 59.931 57.143 0.00 0.00 32.18 3.66
2395 2473 1.757118 CCACCTAGTCGATGACCATGT 59.243 52.381 0.00 0.00 32.18 3.21
2396 2474 2.223829 CCACCTAGTCGATGACCATGTC 60.224 54.545 0.00 0.00 32.18 3.06
2397 2475 1.676529 ACCTAGTCGATGACCATGTCG 59.323 52.381 0.00 0.00 39.11 4.35
2398 2476 1.600663 CCTAGTCGATGACCATGTCGC 60.601 57.143 0.00 0.00 37.74 5.19
2399 2477 0.384309 TAGTCGATGACCATGTCGCC 59.616 55.000 0.00 0.00 37.74 5.54
2400 2478 1.883084 GTCGATGACCATGTCGCCC 60.883 63.158 0.00 0.00 37.74 6.13
2401 2479 2.058001 TCGATGACCATGTCGCCCT 61.058 57.895 0.00 0.00 37.74 5.19
2402 2480 1.884464 CGATGACCATGTCGCCCTG 60.884 63.158 0.00 0.00 34.95 4.45
2403 2481 1.524621 GATGACCATGTCGCCCTGG 60.525 63.158 0.00 0.00 34.95 4.45
2404 2482 3.704231 ATGACCATGTCGCCCTGGC 62.704 63.158 0.00 0.00 35.88 4.85
2414 2492 3.056328 GCCCTGGCGACCAAAGAC 61.056 66.667 0.00 0.00 30.80 3.01
2415 2493 2.429930 CCCTGGCGACCAAAGACA 59.570 61.111 0.00 0.00 30.80 3.41
2416 2494 1.228124 CCCTGGCGACCAAAGACAA 60.228 57.895 0.00 0.00 30.80 3.18
2417 2495 1.515521 CCCTGGCGACCAAAGACAAC 61.516 60.000 0.00 0.00 30.80 3.32
2418 2496 1.515521 CCTGGCGACCAAAGACAACC 61.516 60.000 0.00 0.00 30.80 3.77
2419 2497 0.817634 CTGGCGACCAAAGACAACCA 60.818 55.000 0.00 0.00 30.80 3.67
2420 2498 1.098712 TGGCGACCAAAGACAACCAC 61.099 55.000 0.00 0.00 0.00 4.16
2421 2499 1.652563 GCGACCAAAGACAACCACC 59.347 57.895 0.00 0.00 0.00 4.61
2422 2500 1.098712 GCGACCAAAGACAACCACCA 61.099 55.000 0.00 0.00 0.00 4.17
2423 2501 0.661020 CGACCAAAGACAACCACCAC 59.339 55.000 0.00 0.00 0.00 4.16
2424 2502 1.757682 GACCAAAGACAACCACCACA 58.242 50.000 0.00 0.00 0.00 4.17
2425 2503 1.404035 GACCAAAGACAACCACCACAC 59.596 52.381 0.00 0.00 0.00 3.82
2426 2504 0.380378 CCAAAGACAACCACCACACG 59.620 55.000 0.00 0.00 0.00 4.49
2427 2505 1.091537 CAAAGACAACCACCACACGT 58.908 50.000 0.00 0.00 0.00 4.49
2428 2506 1.091537 AAAGACAACCACCACACGTG 58.908 50.000 15.48 15.48 42.62 4.49
2446 2524 3.992317 GGAGATACCCGGAGCCGC 61.992 72.222 0.73 0.00 38.24 6.53
2447 2525 3.992317 GAGATACCCGGAGCCGCC 61.992 72.222 0.73 0.00 38.24 6.13
2458 2536 4.443266 AGCCGCCGCTCTGACTTC 62.443 66.667 0.00 0.00 43.95 3.01
2460 2538 4.069232 CCGCCGCTCTGACTTCCA 62.069 66.667 0.00 0.00 0.00 3.53
2461 2539 2.811317 CGCCGCTCTGACTTCCAC 60.811 66.667 0.00 0.00 0.00 4.02
2462 2540 2.811317 GCCGCTCTGACTTCCACG 60.811 66.667 0.00 0.00 0.00 4.94
2463 2541 2.811317 CCGCTCTGACTTCCACGC 60.811 66.667 0.00 0.00 0.00 5.34
2464 2542 2.811317 CGCTCTGACTTCCACGCC 60.811 66.667 0.00 0.00 0.00 5.68
2465 2543 2.811317 GCTCTGACTTCCACGCCG 60.811 66.667 0.00 0.00 0.00 6.46
2466 2544 2.125912 CTCTGACTTCCACGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
2467 2545 4.373116 TCTGACTTCCACGCCGGC 62.373 66.667 19.07 19.07 33.14 6.13
2495 2573 3.188786 CGCACTCGCCTAGCCAAC 61.189 66.667 0.00 0.00 33.11 3.77
2496 2574 3.188786 GCACTCGCCTAGCCAACG 61.189 66.667 0.00 0.00 0.00 4.10
2497 2575 2.571757 CACTCGCCTAGCCAACGA 59.428 61.111 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.344772 GGACTCTAAGACTATGAAGATACAAGA 57.655 37.037 0.00 0.00 0.00 3.02
3 4 8.286800 CGGACTCTAAGACTATGAAGATACAAG 58.713 40.741 0.00 0.00 0.00 3.16
4 5 7.228906 CCGGACTCTAAGACTATGAAGATACAA 59.771 40.741 0.00 0.00 0.00 2.41
5 6 6.711194 CCGGACTCTAAGACTATGAAGATACA 59.289 42.308 0.00 0.00 0.00 2.29
6 7 6.348704 GCCGGACTCTAAGACTATGAAGATAC 60.349 46.154 5.05 0.00 0.00 2.24
7 8 5.706369 GCCGGACTCTAAGACTATGAAGATA 59.294 44.000 5.05 0.00 0.00 1.98
8 9 4.521256 GCCGGACTCTAAGACTATGAAGAT 59.479 45.833 5.05 0.00 0.00 2.40
9 10 3.884091 GCCGGACTCTAAGACTATGAAGA 59.116 47.826 5.05 0.00 0.00 2.87
10 11 3.004944 GGCCGGACTCTAAGACTATGAAG 59.995 52.174 5.05 0.00 0.00 3.02
11 12 2.957006 GGCCGGACTCTAAGACTATGAA 59.043 50.000 5.05 0.00 0.00 2.57
12 13 2.584236 GGCCGGACTCTAAGACTATGA 58.416 52.381 5.05 0.00 0.00 2.15
13 14 1.267261 CGGCCGGACTCTAAGACTATG 59.733 57.143 20.10 0.00 0.00 2.23
14 15 1.142465 TCGGCCGGACTCTAAGACTAT 59.858 52.381 27.83 0.00 0.00 2.12
15 16 0.543277 TCGGCCGGACTCTAAGACTA 59.457 55.000 27.83 0.00 0.00 2.59
16 17 0.106619 ATCGGCCGGACTCTAAGACT 60.107 55.000 27.83 0.00 0.00 3.24
17 18 0.030908 CATCGGCCGGACTCTAAGAC 59.969 60.000 27.83 0.00 0.00 3.01
18 19 0.106868 TCATCGGCCGGACTCTAAGA 60.107 55.000 27.83 3.90 0.00 2.10
19 20 0.962489 ATCATCGGCCGGACTCTAAG 59.038 55.000 27.83 0.99 0.00 2.18
20 21 0.673985 CATCATCGGCCGGACTCTAA 59.326 55.000 27.83 3.54 0.00 2.10
21 22 0.179001 TCATCATCGGCCGGACTCTA 60.179 55.000 27.83 4.46 0.00 2.43
22 23 0.829602 ATCATCATCGGCCGGACTCT 60.830 55.000 27.83 3.59 0.00 3.24
23 24 0.888619 TATCATCATCGGCCGGACTC 59.111 55.000 27.83 0.00 0.00 3.36
24 25 0.891373 CTATCATCATCGGCCGGACT 59.109 55.000 27.83 7.73 0.00 3.85
25 26 0.603569 ACTATCATCATCGGCCGGAC 59.396 55.000 27.83 0.00 0.00 4.79
26 27 0.888619 GACTATCATCATCGGCCGGA 59.111 55.000 27.83 16.64 0.00 5.14
27 28 0.108615 GGACTATCATCATCGGCCGG 60.109 60.000 27.83 10.69 0.00 6.13
28 29 0.456824 CGGACTATCATCATCGGCCG 60.457 60.000 22.12 22.12 0.00 6.13
29 30 0.108615 CCGGACTATCATCATCGGCC 60.109 60.000 0.00 0.00 0.00 6.13
30 31 3.425578 CCGGACTATCATCATCGGC 57.574 57.895 0.00 0.00 0.00 5.54
31 32 0.891373 AGCCGGACTATCATCATCGG 59.109 55.000 5.05 0.00 40.33 4.18
47 48 2.668106 TAGGGGGTGTCCGGATAGCC 62.668 65.000 34.24 34.24 39.05 3.93
48 49 1.152398 TAGGGGGTGTCCGGATAGC 60.152 63.158 20.91 20.91 36.01 2.97
49 50 0.187851 ACTAGGGGGTGTCCGGATAG 59.812 60.000 7.81 5.89 36.01 2.08
50 51 0.186873 GACTAGGGGGTGTCCGGATA 59.813 60.000 7.81 0.10 36.01 2.59
51 52 1.075450 GACTAGGGGGTGTCCGGAT 60.075 63.158 7.81 0.00 36.01 4.18
52 53 2.361771 GACTAGGGGGTGTCCGGA 59.638 66.667 0.00 0.00 36.01 5.14
53 54 2.762875 GGACTAGGGGGTGTCCGG 60.763 72.222 0.00 0.00 42.51 5.14
56 57 4.051932 CCTGGACTAGGGGGTGTC 57.948 66.667 0.00 0.00 43.33 3.67
63 64 0.631753 TGAGGGAGTCCTGGACTAGG 59.368 60.000 28.41 0.00 43.53 3.02
64 65 2.534042 TTGAGGGAGTCCTGGACTAG 57.466 55.000 28.41 0.00 43.53 2.57
65 66 2.314852 TCATTGAGGGAGTCCTGGACTA 59.685 50.000 28.41 12.97 43.53 2.59
66 67 1.079490 TCATTGAGGGAGTCCTGGACT 59.921 52.381 28.70 28.70 46.42 3.85
67 68 1.573108 TCATTGAGGGAGTCCTGGAC 58.427 55.000 19.20 19.20 45.05 4.02
68 69 2.402564 GATCATTGAGGGAGTCCTGGA 58.597 52.381 9.58 0.00 45.05 3.86
69 70 1.069823 CGATCATTGAGGGAGTCCTGG 59.930 57.143 9.58 0.00 45.05 4.45
70 71 1.759445 ACGATCATTGAGGGAGTCCTG 59.241 52.381 9.58 0.00 45.05 3.86
72 73 1.269309 CGACGATCATTGAGGGAGTCC 60.269 57.143 0.00 0.00 0.00 3.85
73 74 1.866063 GCGACGATCATTGAGGGAGTC 60.866 57.143 0.00 0.00 0.00 3.36
74 75 0.103208 GCGACGATCATTGAGGGAGT 59.897 55.000 0.00 0.00 0.00 3.85
75 76 0.598680 GGCGACGATCATTGAGGGAG 60.599 60.000 0.00 0.00 0.00 4.30
76 77 1.441729 GGCGACGATCATTGAGGGA 59.558 57.895 0.00 0.00 0.00 4.20
77 78 4.033894 GGCGACGATCATTGAGGG 57.966 61.111 0.00 0.00 0.00 4.30
164 165 8.313944 TCCTTAAGCAGTACAAGGTTATATCA 57.686 34.615 8.37 0.00 39.89 2.15
170 171 4.010349 GCATCCTTAAGCAGTACAAGGTT 58.990 43.478 8.37 8.03 39.89 3.50
185 186 6.872628 CATGTATAGTCAACATGCATCCTT 57.127 37.500 0.00 0.00 45.43 3.36
347 381 2.187896 TTTTCCCCGCTTCCTACCCG 62.188 60.000 0.00 0.00 0.00 5.28
389 431 5.738619 TGTAGTGATTTTCTAGCCACTCA 57.261 39.130 0.00 0.00 40.07 3.41
393 435 7.676947 AGTTAGTTGTAGTGATTTTCTAGCCA 58.323 34.615 0.00 0.00 0.00 4.75
412 454 6.264744 TCTGGAATGCGCTACTATTAGTTAGT 59.735 38.462 9.73 0.00 43.66 2.24
430 472 0.524862 CAGCAGCGCTTTTCTGGAAT 59.475 50.000 7.50 0.00 36.40 3.01
455 497 1.278127 ACCTGCGCTACCACTGTTAAT 59.722 47.619 9.73 0.00 0.00 1.40
457 499 0.037697 CACCTGCGCTACCACTGTTA 60.038 55.000 9.73 0.00 0.00 2.41
464 506 2.815647 GTCTGCACCTGCGCTACC 60.816 66.667 9.73 0.00 45.83 3.18
472 514 4.436998 GTAGCGCGGTCTGCACCT 62.437 66.667 16.92 0.00 46.97 4.00
476 518 0.379669 TTAGTAGTAGCGCGGTCTGC 59.620 55.000 16.92 15.22 41.47 4.26
503 545 3.517602 CGCTACTACTATGGTGCAACAA 58.482 45.455 9.38 0.00 39.98 2.83
507 549 0.030235 CGCGCTACTACTATGGTGCA 59.970 55.000 5.56 0.00 36.45 4.57
510 552 0.822532 AGCCGCGCTACTACTATGGT 60.823 55.000 5.56 0.00 36.99 3.55
513 555 1.286260 GCAGCCGCGCTACTACTAT 59.714 57.895 5.56 0.00 36.40 2.12
540 582 0.591170 GCGTGTTTTGAGGCTAGCAA 59.409 50.000 18.24 0.00 0.00 3.91
566 608 9.733219 CTATGTACTACTAGGAAAAACACTAGC 57.267 37.037 0.00 0.00 40.19 3.42
571 613 7.543172 CGTTGCTATGTACTACTAGGAAAAACA 59.457 37.037 0.00 0.00 28.84 2.83
577 619 5.922053 TCTCGTTGCTATGTACTACTAGGA 58.078 41.667 0.00 0.00 0.00 2.94
587 629 3.941483 CCCATTTCTTCTCGTTGCTATGT 59.059 43.478 0.00 0.00 0.00 2.29
588 630 3.242870 GCCCATTTCTTCTCGTTGCTATG 60.243 47.826 0.00 0.00 0.00 2.23
589 631 2.945668 GCCCATTTCTTCTCGTTGCTAT 59.054 45.455 0.00 0.00 0.00 2.97
590 632 2.356135 GCCCATTTCTTCTCGTTGCTA 58.644 47.619 0.00 0.00 0.00 3.49
591 633 1.168714 GCCCATTTCTTCTCGTTGCT 58.831 50.000 0.00 0.00 0.00 3.91
592 634 0.179189 CGCCCATTTCTTCTCGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
593 635 0.447801 CCGCCCATTTCTTCTCGTTG 59.552 55.000 0.00 0.00 0.00 4.10
594 636 0.036306 ACCGCCCATTTCTTCTCGTT 59.964 50.000 0.00 0.00 0.00 3.85
595 637 0.391263 GACCGCCCATTTCTTCTCGT 60.391 55.000 0.00 0.00 0.00 4.18
596 638 1.421410 CGACCGCCCATTTCTTCTCG 61.421 60.000 0.00 0.00 0.00 4.04
597 639 1.090052 CCGACCGCCCATTTCTTCTC 61.090 60.000 0.00 0.00 0.00 2.87
623 665 1.422977 TTTCCTGGCTGTGTAGGGCA 61.423 55.000 0.00 0.00 37.66 5.36
632 674 2.821366 AGCGCGATTTCCTGGCTG 60.821 61.111 12.10 0.00 31.74 4.85
638 680 1.290203 TGATCTTCAGCGCGATTTCC 58.710 50.000 12.10 0.00 0.00 3.13
1214 1267 4.928140 ACACCAGGGTCGTCCGGT 62.928 66.667 0.00 0.00 41.04 5.28
1331 1384 1.671742 CACTCGTACTGGCCCTTGT 59.328 57.895 0.00 0.00 0.00 3.16
1334 1387 3.760035 CGCACTCGTACTGGCCCT 61.760 66.667 0.00 0.00 0.00 5.19
1419 1472 2.805546 CTCAGTGGCCATGCATGC 59.194 61.111 21.69 11.82 0.00 4.06
1433 1486 0.237498 CTCACACGTACGAGTGCTCA 59.763 55.000 32.36 19.23 45.45 4.26
1543 1607 4.728595 GCCTACGCGGGTTACAAATTAAAG 60.729 45.833 11.50 0.00 0.00 1.85
1699 1764 7.147897 ACACCTTTGAGAACGATCATAGTATCA 60.148 37.037 0.00 0.00 0.00 2.15
1706 1771 5.048713 GGAAAACACCTTTGAGAACGATCAT 60.049 40.000 0.00 0.00 0.00 2.45
1711 1776 2.949644 AGGGAAAACACCTTTGAGAACG 59.050 45.455 0.00 0.00 33.64 3.95
1750 1815 6.276847 TGTCATGGTTAAAAATTTGACGCTT 58.723 32.000 0.00 0.00 37.01 4.68
1765 1830 6.976636 AAAAACGTTTGATTTGTCATGGTT 57.023 29.167 15.46 0.00 0.00 3.67
1866 1940 2.028839 TCACGAGCACGAAAATTCCCTA 60.029 45.455 11.40 0.00 42.66 3.53
1936 2011 1.832883 ACGGTAATGCAAATCTGGCA 58.167 45.000 0.00 0.00 46.66 4.92
1938 2013 5.469479 AGAAAAACGGTAATGCAAATCTGG 58.531 37.500 0.00 0.00 0.00 3.86
2028 2106 1.652012 CTGCCGGTTGCTCGAAAAA 59.348 52.632 1.90 0.00 42.00 1.94
2029 2107 2.258013 CCTGCCGGTTGCTCGAAAA 61.258 57.895 1.90 0.00 42.00 2.29
2030 2108 2.668212 CCTGCCGGTTGCTCGAAA 60.668 61.111 1.90 0.00 42.00 3.46
2031 2109 3.589654 CTCCTGCCGGTTGCTCGAA 62.590 63.158 1.90 0.00 42.00 3.71
2032 2110 4.069232 CTCCTGCCGGTTGCTCGA 62.069 66.667 1.90 0.00 42.00 4.04
2034 2112 4.400961 AGCTCCTGCCGGTTGCTC 62.401 66.667 1.90 0.00 42.00 4.26
2035 2113 4.400961 GAGCTCCTGCCGGTTGCT 62.401 66.667 14.53 14.53 41.29 3.91
2036 2114 4.400961 AGAGCTCCTGCCGGTTGC 62.401 66.667 10.93 0.44 40.80 4.17
2037 2115 2.435586 CAGAGCTCCTGCCGGTTG 60.436 66.667 10.93 0.00 40.80 3.77
2044 2122 2.125773 ATGAAAAGGCAGAGCTCCTG 57.874 50.000 10.93 9.35 45.67 3.86
2045 2123 2.895242 AATGAAAAGGCAGAGCTCCT 57.105 45.000 10.93 0.00 34.90 3.69
2046 2124 4.265073 TCTTAATGAAAAGGCAGAGCTCC 58.735 43.478 10.93 0.00 0.00 4.70
2047 2125 5.645497 TCTTCTTAATGAAAAGGCAGAGCTC 59.355 40.000 5.27 5.27 33.79 4.09
2048 2126 5.564550 TCTTCTTAATGAAAAGGCAGAGCT 58.435 37.500 0.00 0.00 33.79 4.09
2049 2127 5.645497 TCTCTTCTTAATGAAAAGGCAGAGC 59.355 40.000 0.00 0.00 35.90 4.09
2050 2128 7.678947 TTCTCTTCTTAATGAAAAGGCAGAG 57.321 36.000 0.00 0.00 36.55 3.35
2051 2129 8.517878 CAATTCTCTTCTTAATGAAAAGGCAGA 58.482 33.333 0.00 0.00 33.79 4.26
2052 2130 8.517878 TCAATTCTCTTCTTAATGAAAAGGCAG 58.482 33.333 0.00 0.00 33.79 4.85
2053 2131 8.299570 GTCAATTCTCTTCTTAATGAAAAGGCA 58.700 33.333 0.00 0.00 33.79 4.75
2054 2132 7.757173 GGTCAATTCTCTTCTTAATGAAAAGGC 59.243 37.037 0.00 0.00 33.79 4.35
2055 2133 8.796475 TGGTCAATTCTCTTCTTAATGAAAAGG 58.204 33.333 0.00 0.00 33.79 3.11
2056 2134 9.837525 CTGGTCAATTCTCTTCTTAATGAAAAG 57.162 33.333 0.00 0.00 33.79 2.27
2057 2135 9.354673 ACTGGTCAATTCTCTTCTTAATGAAAA 57.645 29.630 0.00 0.00 33.79 2.29
2058 2136 8.924511 ACTGGTCAATTCTCTTCTTAATGAAA 57.075 30.769 0.00 0.00 33.79 2.69
2059 2137 8.924511 AACTGGTCAATTCTCTTCTTAATGAA 57.075 30.769 0.00 0.00 0.00 2.57
2060 2138 8.924511 AAACTGGTCAATTCTCTTCTTAATGA 57.075 30.769 0.00 0.00 0.00 2.57
2065 2143 9.454859 CCTTATAAACTGGTCAATTCTCTTCTT 57.545 33.333 0.00 0.00 0.00 2.52
2066 2144 8.826765 TCCTTATAAACTGGTCAATTCTCTTCT 58.173 33.333 0.00 0.00 0.00 2.85
2067 2145 9.449719 TTCCTTATAAACTGGTCAATTCTCTTC 57.550 33.333 0.00 0.00 0.00 2.87
2068 2146 9.807921 TTTCCTTATAAACTGGTCAATTCTCTT 57.192 29.630 0.00 0.00 0.00 2.85
2069 2147 9.807921 TTTTCCTTATAAACTGGTCAATTCTCT 57.192 29.630 0.00 0.00 0.00 3.10
2070 2148 9.841880 GTTTTCCTTATAAACTGGTCAATTCTC 57.158 33.333 0.00 0.00 33.71 2.87
2071 2149 9.588096 AGTTTTCCTTATAAACTGGTCAATTCT 57.412 29.630 0.00 0.00 42.54 2.40
2081 2159 4.913784 TCGGCCAGTTTTCCTTATAAACT 58.086 39.130 2.24 0.00 44.38 2.66
2082 2160 5.632244 TTCGGCCAGTTTTCCTTATAAAC 57.368 39.130 2.24 0.00 36.08 2.01
2083 2161 6.448852 GTTTTCGGCCAGTTTTCCTTATAAA 58.551 36.000 2.24 0.00 0.00 1.40
2084 2162 5.047872 GGTTTTCGGCCAGTTTTCCTTATAA 60.048 40.000 2.24 0.00 0.00 0.98
2085 2163 4.460034 GGTTTTCGGCCAGTTTTCCTTATA 59.540 41.667 2.24 0.00 0.00 0.98
2086 2164 3.257375 GGTTTTCGGCCAGTTTTCCTTAT 59.743 43.478 2.24 0.00 0.00 1.73
2087 2165 2.624364 GGTTTTCGGCCAGTTTTCCTTA 59.376 45.455 2.24 0.00 0.00 2.69
2088 2166 1.411246 GGTTTTCGGCCAGTTTTCCTT 59.589 47.619 2.24 0.00 0.00 3.36
2089 2167 1.037493 GGTTTTCGGCCAGTTTTCCT 58.963 50.000 2.24 0.00 0.00 3.36
2090 2168 0.318360 CGGTTTTCGGCCAGTTTTCC 60.318 55.000 2.24 0.00 34.75 3.13
2091 2169 0.664224 TCGGTTTTCGGCCAGTTTTC 59.336 50.000 2.24 0.00 39.77 2.29
2092 2170 1.324383 ATCGGTTTTCGGCCAGTTTT 58.676 45.000 2.24 0.00 39.77 2.43
2093 2171 1.808343 GTATCGGTTTTCGGCCAGTTT 59.192 47.619 2.24 0.00 39.77 2.66
2094 2172 1.270947 TGTATCGGTTTTCGGCCAGTT 60.271 47.619 2.24 0.00 39.77 3.16
2095 2173 0.322322 TGTATCGGTTTTCGGCCAGT 59.678 50.000 2.24 0.00 39.77 4.00
2096 2174 1.597663 GATGTATCGGTTTTCGGCCAG 59.402 52.381 2.24 0.00 39.77 4.85
2097 2175 1.208535 AGATGTATCGGTTTTCGGCCA 59.791 47.619 2.24 0.00 39.77 5.36
2098 2176 1.597663 CAGATGTATCGGTTTTCGGCC 59.402 52.381 0.00 0.00 39.77 6.13
2099 2177 1.003866 GCAGATGTATCGGTTTTCGGC 60.004 52.381 0.00 0.00 39.77 5.54
2100 2178 1.597663 GGCAGATGTATCGGTTTTCGG 59.402 52.381 0.00 0.00 39.77 4.30
2101 2179 2.276201 TGGCAGATGTATCGGTTTTCG 58.724 47.619 0.00 0.00 40.90 3.46
2102 2180 4.814234 TGTATGGCAGATGTATCGGTTTTC 59.186 41.667 0.00 0.00 0.00 2.29
2103 2181 4.574828 GTGTATGGCAGATGTATCGGTTTT 59.425 41.667 0.00 0.00 0.00 2.43
2104 2182 4.127171 GTGTATGGCAGATGTATCGGTTT 58.873 43.478 0.00 0.00 0.00 3.27
2105 2183 3.728845 GTGTATGGCAGATGTATCGGTT 58.271 45.455 0.00 0.00 0.00 4.44
2106 2184 2.288213 CGTGTATGGCAGATGTATCGGT 60.288 50.000 0.00 0.00 0.00 4.69
2107 2185 2.328473 CGTGTATGGCAGATGTATCGG 58.672 52.381 0.00 0.00 0.00 4.18
2108 2186 1.721389 GCGTGTATGGCAGATGTATCG 59.279 52.381 0.00 0.00 0.00 2.92
2109 2187 2.476619 GTGCGTGTATGGCAGATGTATC 59.523 50.000 0.00 0.00 41.83 2.24
2110 2188 2.158971 TGTGCGTGTATGGCAGATGTAT 60.159 45.455 0.00 0.00 41.83 2.29
2111 2189 1.205893 TGTGCGTGTATGGCAGATGTA 59.794 47.619 0.00 0.00 41.83 2.29
2112 2190 0.036483 TGTGCGTGTATGGCAGATGT 60.036 50.000 0.00 0.00 41.83 3.06
2113 2191 0.374758 GTGTGCGTGTATGGCAGATG 59.625 55.000 0.00 0.00 41.83 2.90
2114 2192 1.083806 CGTGTGCGTGTATGGCAGAT 61.084 55.000 0.00 0.00 41.83 2.90
2115 2193 1.736282 CGTGTGCGTGTATGGCAGA 60.736 57.895 0.00 0.00 41.83 4.26
2116 2194 2.778026 CGTGTGCGTGTATGGCAG 59.222 61.111 0.00 0.00 41.83 4.85
2117 2195 3.418913 GCGTGTGCGTGTATGGCA 61.419 61.111 0.00 0.00 40.81 4.92
2118 2196 4.160635 GGCGTGTGCGTGTATGGC 62.161 66.667 0.00 0.00 44.10 4.40
2119 2197 2.739704 CTGGCGTGTGCGTGTATGG 61.740 63.158 0.00 0.00 44.10 2.74
2120 2198 2.778026 CTGGCGTGTGCGTGTATG 59.222 61.111 0.00 0.00 44.10 2.39
2121 2199 3.118454 GCTGGCGTGTGCGTGTAT 61.118 61.111 0.00 0.00 44.10 2.29
2146 2224 2.661566 CGACTTGAGTGGTGCGCAG 61.662 63.158 12.22 0.00 0.00 5.18
2147 2225 2.661537 CGACTTGAGTGGTGCGCA 60.662 61.111 5.66 5.66 0.00 6.09
2148 2226 2.355837 TCGACTTGAGTGGTGCGC 60.356 61.111 0.00 0.00 0.00 6.09
2149 2227 2.365068 CGTCGACTTGAGTGGTGCG 61.365 63.158 14.70 0.00 0.00 5.34
2150 2228 1.007734 TCGTCGACTTGAGTGGTGC 60.008 57.895 14.70 0.00 0.00 5.01
2151 2229 0.030235 TGTCGTCGACTTGAGTGGTG 59.970 55.000 24.75 0.00 33.15 4.17
2152 2230 0.030369 GTGTCGTCGACTTGAGTGGT 59.970 55.000 24.75 0.00 33.15 4.16
2153 2231 0.311165 AGTGTCGTCGACTTGAGTGG 59.689 55.000 24.75 0.00 33.15 4.00
2154 2232 1.268589 ACAGTGTCGTCGACTTGAGTG 60.269 52.381 26.25 20.57 33.15 3.51
2155 2233 1.002684 GACAGTGTCGTCGACTTGAGT 60.003 52.381 26.25 19.16 33.15 3.41
2156 2234 1.002792 TGACAGTGTCGTCGACTTGAG 60.003 52.381 26.25 16.86 38.84 3.02
2157 2235 1.018910 TGACAGTGTCGTCGACTTGA 58.981 50.000 26.25 8.28 38.84 3.02
2158 2236 1.121240 GTGACAGTGTCGTCGACTTG 58.879 55.000 24.75 22.65 38.84 3.16
2159 2237 0.030369 GGTGACAGTGTCGTCGACTT 59.970 55.000 24.75 11.42 38.84 3.01
2160 2238 1.653115 GGTGACAGTGTCGTCGACT 59.347 57.895 24.75 5.74 38.84 4.18
2161 2239 1.371389 GGGTGACAGTGTCGTCGAC 60.371 63.158 18.51 18.51 38.84 4.20
2162 2240 1.385756 TTGGGTGACAGTGTCGTCGA 61.386 55.000 18.17 7.42 38.84 4.20
2163 2241 0.939577 CTTGGGTGACAGTGTCGTCG 60.940 60.000 18.17 0.32 38.84 5.12
2164 2242 0.104304 ACTTGGGTGACAGTGTCGTC 59.896 55.000 18.17 13.12 34.95 4.20
2165 2243 0.179084 CACTTGGGTGACAGTGTCGT 60.179 55.000 18.17 6.13 45.61 4.34
2166 2244 0.104120 TCACTTGGGTGACAGTGTCG 59.896 55.000 18.17 5.50 46.19 4.35
2175 2253 0.319900 CGTCTCTGGTCACTTGGGTG 60.320 60.000 0.00 0.00 44.23 4.61
2176 2254 0.469331 TCGTCTCTGGTCACTTGGGT 60.469 55.000 0.00 0.00 0.00 4.51
2177 2255 0.038159 GTCGTCTCTGGTCACTTGGG 60.038 60.000 0.00 0.00 0.00 4.12
2178 2256 0.673985 TGTCGTCTCTGGTCACTTGG 59.326 55.000 0.00 0.00 0.00 3.61
2179 2257 1.603172 GGTGTCGTCTCTGGTCACTTG 60.603 57.143 0.00 0.00 0.00 3.16
2180 2258 0.674534 GGTGTCGTCTCTGGTCACTT 59.325 55.000 0.00 0.00 0.00 3.16
2181 2259 1.179814 GGGTGTCGTCTCTGGTCACT 61.180 60.000 0.00 0.00 0.00 3.41
2182 2260 1.289380 GGGTGTCGTCTCTGGTCAC 59.711 63.158 0.00 0.00 0.00 3.67
2183 2261 1.906824 GGGGTGTCGTCTCTGGTCA 60.907 63.158 0.00 0.00 0.00 4.02
2184 2262 1.906824 TGGGGTGTCGTCTCTGGTC 60.907 63.158 0.00 0.00 0.00 4.02
2185 2263 2.200370 TGGGGTGTCGTCTCTGGT 59.800 61.111 0.00 0.00 0.00 4.00
2186 2264 1.754380 TTGTGGGGTGTCGTCTCTGG 61.754 60.000 0.00 0.00 0.00 3.86
2187 2265 0.600255 GTTGTGGGGTGTCGTCTCTG 60.600 60.000 0.00 0.00 0.00 3.35
2188 2266 1.046472 TGTTGTGGGGTGTCGTCTCT 61.046 55.000 0.00 0.00 0.00 3.10
2189 2267 0.600255 CTGTTGTGGGGTGTCGTCTC 60.600 60.000 0.00 0.00 0.00 3.36
2190 2268 1.046472 TCTGTTGTGGGGTGTCGTCT 61.046 55.000 0.00 0.00 0.00 4.18
2191 2269 0.179067 TTCTGTTGTGGGGTGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
2192 2270 0.463116 GTTCTGTTGTGGGGTGTCGT 60.463 55.000 0.00 0.00 0.00 4.34
2193 2271 0.462937 TGTTCTGTTGTGGGGTGTCG 60.463 55.000 0.00 0.00 0.00 4.35
2194 2272 1.021968 GTGTTCTGTTGTGGGGTGTC 58.978 55.000 0.00 0.00 0.00 3.67
2195 2273 0.623723 AGTGTTCTGTTGTGGGGTGT 59.376 50.000 0.00 0.00 0.00 4.16
2196 2274 1.024271 CAGTGTTCTGTTGTGGGGTG 58.976 55.000 0.00 0.00 36.97 4.61
2197 2275 0.106719 CCAGTGTTCTGTTGTGGGGT 60.107 55.000 0.00 0.00 39.82 4.95
2198 2276 0.823356 CCCAGTGTTCTGTTGTGGGG 60.823 60.000 0.00 0.00 43.76 4.96
2199 2277 2.719376 CCCAGTGTTCTGTTGTGGG 58.281 57.895 0.00 0.00 42.04 4.61
2200 2278 0.466189 AGCCCAGTGTTCTGTTGTGG 60.466 55.000 0.00 0.00 39.82 4.17
2201 2279 1.334869 GAAGCCCAGTGTTCTGTTGTG 59.665 52.381 0.00 0.00 39.82 3.33
2202 2280 1.064758 TGAAGCCCAGTGTTCTGTTGT 60.065 47.619 0.00 0.00 39.82 3.32
2203 2281 1.605710 CTGAAGCCCAGTGTTCTGTTG 59.394 52.381 0.00 0.00 39.82 3.33
2204 2282 1.490490 TCTGAAGCCCAGTGTTCTGTT 59.510 47.619 3.97 0.00 43.38 3.16
2205 2283 1.071385 CTCTGAAGCCCAGTGTTCTGT 59.929 52.381 3.97 0.00 43.38 3.41
2206 2284 1.805869 CTCTGAAGCCCAGTGTTCTG 58.194 55.000 3.97 0.00 43.38 3.02
2207 2285 0.036022 GCTCTGAAGCCCAGTGTTCT 59.964 55.000 3.97 0.00 43.10 3.01
2208 2286 2.549332 GCTCTGAAGCCCAGTGTTC 58.451 57.895 3.97 0.00 43.10 3.18
2209 2287 4.809070 GCTCTGAAGCCCAGTGTT 57.191 55.556 3.97 0.00 43.10 3.32
2226 2304 4.147449 TGGATGTCGGAGCAGCGG 62.147 66.667 0.00 0.00 0.00 5.52
2227 2305 2.887568 GTGGATGTCGGAGCAGCG 60.888 66.667 0.00 0.00 0.00 5.18
2228 2306 2.103042 GTGTGGATGTCGGAGCAGC 61.103 63.158 0.00 0.00 0.00 5.25
2229 2307 1.448540 GGTGTGGATGTCGGAGCAG 60.449 63.158 0.00 0.00 0.00 4.24
2230 2308 2.662596 GGTGTGGATGTCGGAGCA 59.337 61.111 0.00 0.00 0.00 4.26
2231 2309 2.509336 CGGTGTGGATGTCGGAGC 60.509 66.667 0.00 0.00 0.00 4.70
2232 2310 2.184322 CCGGTGTGGATGTCGGAG 59.816 66.667 0.00 0.00 44.69 4.63
2233 2311 4.077184 GCCGGTGTGGATGTCGGA 62.077 66.667 1.90 0.00 44.69 4.55
2236 2314 4.796495 GGGGCCGGTGTGGATGTC 62.796 72.222 1.90 0.00 42.00 3.06
2257 2335 4.394712 ACTAGGCTGGTGCGTGGC 62.395 66.667 1.44 0.00 38.77 5.01
2258 2336 2.125512 GACTAGGCTGGTGCGTGG 60.126 66.667 8.74 0.00 40.56 4.94
2259 2337 2.284798 ATCGACTAGGCTGGTGCGTG 62.285 60.000 8.74 0.00 40.82 5.34
2260 2338 2.052690 ATCGACTAGGCTGGTGCGT 61.053 57.895 8.74 1.10 40.82 5.24
2261 2339 1.589993 CATCGACTAGGCTGGTGCG 60.590 63.158 8.74 11.91 40.82 5.34
2262 2340 1.227380 CCATCGACTAGGCTGGTGC 60.227 63.158 8.74 0.00 38.76 5.01
2297 2375 0.532115 CATAGGGTGTTGGCTTTGGC 59.468 55.000 0.00 0.00 37.82 4.52
2298 2376 0.532115 GCATAGGGTGTTGGCTTTGG 59.468 55.000 0.00 0.00 0.00 3.28
2299 2377 1.067635 GTGCATAGGGTGTTGGCTTTG 60.068 52.381 0.00 0.00 0.00 2.77
2300 2378 1.256812 GTGCATAGGGTGTTGGCTTT 58.743 50.000 0.00 0.00 0.00 3.51
2301 2379 0.112218 TGTGCATAGGGTGTTGGCTT 59.888 50.000 0.00 0.00 0.00 4.35
2302 2380 0.609131 GTGTGCATAGGGTGTTGGCT 60.609 55.000 0.00 0.00 0.00 4.75
2303 2381 1.883021 GTGTGCATAGGGTGTTGGC 59.117 57.895 0.00 0.00 0.00 4.52
2304 2382 0.321210 TCGTGTGCATAGGGTGTTGG 60.321 55.000 3.23 0.00 0.00 3.77
2305 2383 1.078709 CTCGTGTGCATAGGGTGTTG 58.921 55.000 3.23 0.00 0.00 3.33
2306 2384 0.973632 TCTCGTGTGCATAGGGTGTT 59.026 50.000 3.23 0.00 0.00 3.32
2307 2385 1.195115 ATCTCGTGTGCATAGGGTGT 58.805 50.000 3.23 0.00 0.00 4.16
2308 2386 3.579709 GATATCTCGTGTGCATAGGGTG 58.420 50.000 3.23 0.00 0.00 4.61
2309 2387 2.563179 GGATATCTCGTGTGCATAGGGT 59.437 50.000 2.05 0.00 0.00 4.34
2310 2388 2.416027 CGGATATCTCGTGTGCATAGGG 60.416 54.545 2.05 0.00 0.00 3.53
2311 2389 2.416027 CCGGATATCTCGTGTGCATAGG 60.416 54.545 0.00 0.00 0.00 2.57
2312 2390 2.868662 CCGGATATCTCGTGTGCATAG 58.131 52.381 0.00 0.00 0.00 2.23
2313 2391 1.067846 GCCGGATATCTCGTGTGCATA 60.068 52.381 5.05 0.00 0.00 3.14
2314 2392 0.319900 GCCGGATATCTCGTGTGCAT 60.320 55.000 5.05 0.00 0.00 3.96
2315 2393 1.067416 GCCGGATATCTCGTGTGCA 59.933 57.895 5.05 0.00 0.00 4.57
2316 2394 2.016704 CGCCGGATATCTCGTGTGC 61.017 63.158 5.05 3.61 0.00 4.57
2317 2395 2.016704 GCGCCGGATATCTCGTGTG 61.017 63.158 5.05 6.88 0.00 3.82
2318 2396 2.335369 GCGCCGGATATCTCGTGT 59.665 61.111 5.05 0.00 0.00 4.49
2319 2397 2.430921 GGCGCCGGATATCTCGTG 60.431 66.667 12.58 1.10 0.00 4.35
2320 2398 4.039357 CGGCGCCGGATATCTCGT 62.039 66.667 40.50 0.00 35.56 4.18
2337 2415 4.681978 AGTGGAAGTCGGTGCGGC 62.682 66.667 0.00 0.00 0.00 6.53
2338 2416 2.432628 GAGTGGAAGTCGGTGCGG 60.433 66.667 0.00 0.00 0.00 5.69
2339 2417 2.432628 GGAGTGGAAGTCGGTGCG 60.433 66.667 0.00 0.00 37.07 5.34
2340 2418 2.432628 CGGAGTGGAAGTCGGTGC 60.433 66.667 0.00 0.00 37.07 5.01
2341 2419 2.261671 CCGGAGTGGAAGTCGGTG 59.738 66.667 0.00 0.00 42.00 4.94
2342 2420 3.692406 GCCGGAGTGGAAGTCGGT 61.692 66.667 5.05 0.00 42.00 4.69
2343 2421 4.452733 GGCCGGAGTGGAAGTCGG 62.453 72.222 5.05 0.00 42.00 4.79
2344 2422 4.452733 GGGCCGGAGTGGAAGTCG 62.453 72.222 5.05 0.00 42.00 4.18
2345 2423 4.097361 GGGGCCGGAGTGGAAGTC 62.097 72.222 5.05 0.00 42.00 3.01
2363 2441 2.240162 CTAGGTGGGTTCGTGGCCTC 62.240 65.000 3.32 0.00 0.00 4.70
2364 2442 2.203877 TAGGTGGGTTCGTGGCCT 60.204 61.111 3.32 0.00 0.00 5.19
2365 2443 2.267961 CTAGGTGGGTTCGTGGCC 59.732 66.667 0.00 0.00 0.00 5.36
2366 2444 1.079336 GACTAGGTGGGTTCGTGGC 60.079 63.158 0.00 0.00 0.00 5.01
2367 2445 1.214589 CGACTAGGTGGGTTCGTGG 59.785 63.158 0.00 0.00 0.00 4.94
2368 2446 0.815734 ATCGACTAGGTGGGTTCGTG 59.184 55.000 0.00 0.00 0.00 4.35
2369 2447 0.815734 CATCGACTAGGTGGGTTCGT 59.184 55.000 0.00 0.00 0.00 3.85
2370 2448 1.100510 TCATCGACTAGGTGGGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
2371 2449 1.136500 GGTCATCGACTAGGTGGGTTC 59.864 57.143 0.00 0.00 32.47 3.62
2372 2450 1.192428 GGTCATCGACTAGGTGGGTT 58.808 55.000 0.00 0.00 32.47 4.11
2373 2451 0.040646 TGGTCATCGACTAGGTGGGT 59.959 55.000 0.00 0.00 32.47 4.51
2374 2452 1.069204 CATGGTCATCGACTAGGTGGG 59.931 57.143 0.00 0.00 32.47 4.61
2375 2453 1.757118 ACATGGTCATCGACTAGGTGG 59.243 52.381 0.00 0.00 36.76 4.61
2376 2454 2.541794 CGACATGGTCATCGACTAGGTG 60.542 54.545 2.49 0.00 38.08 4.00
2377 2455 1.676529 CGACATGGTCATCGACTAGGT 59.323 52.381 0.00 0.00 40.38 3.08
2378 2456 1.600663 GCGACATGGTCATCGACTAGG 60.601 57.143 7.55 0.00 40.86 3.02
2379 2457 1.600663 GGCGACATGGTCATCGACTAG 60.601 57.143 7.55 0.00 43.26 2.57
2380 2458 0.384309 GGCGACATGGTCATCGACTA 59.616 55.000 7.55 0.00 43.26 2.59
2381 2459 1.141881 GGCGACATGGTCATCGACT 59.858 57.895 7.55 0.00 43.26 4.18
2382 2460 1.883084 GGGCGACATGGTCATCGAC 60.883 63.158 7.55 4.29 45.95 4.20
2383 2461 2.058001 AGGGCGACATGGTCATCGA 61.058 57.895 7.55 0.00 40.86 3.59
2384 2462 1.884464 CAGGGCGACATGGTCATCG 60.884 63.158 0.00 0.00 38.79 3.84
2385 2463 4.131376 CAGGGCGACATGGTCATC 57.869 61.111 0.00 0.00 38.79 2.92
2397 2475 3.056328 GTCTTTGGTCGCCAGGGC 61.056 66.667 0.00 0.00 33.81 5.19
2398 2476 1.228124 TTGTCTTTGGTCGCCAGGG 60.228 57.895 0.00 0.00 33.81 4.45
2399 2477 1.515521 GGTTGTCTTTGGTCGCCAGG 61.516 60.000 0.00 0.00 33.81 4.45
2400 2478 0.817634 TGGTTGTCTTTGGTCGCCAG 60.818 55.000 0.00 0.00 33.81 4.85
2401 2479 1.098712 GTGGTTGTCTTTGGTCGCCA 61.099 55.000 0.00 0.00 0.00 5.69
2402 2480 1.652563 GTGGTTGTCTTTGGTCGCC 59.347 57.895 0.00 0.00 0.00 5.54
2403 2481 1.098712 TGGTGGTTGTCTTTGGTCGC 61.099 55.000 0.00 0.00 0.00 5.19
2404 2482 0.661020 GTGGTGGTTGTCTTTGGTCG 59.339 55.000 0.00 0.00 0.00 4.79
2405 2483 1.404035 GTGTGGTGGTTGTCTTTGGTC 59.596 52.381 0.00 0.00 0.00 4.02
2406 2484 1.470051 GTGTGGTGGTTGTCTTTGGT 58.530 50.000 0.00 0.00 0.00 3.67
2407 2485 0.380378 CGTGTGGTGGTTGTCTTTGG 59.620 55.000 0.00 0.00 0.00 3.28
2408 2486 1.091537 ACGTGTGGTGGTTGTCTTTG 58.908 50.000 0.00 0.00 0.00 2.77
2409 2487 1.091537 CACGTGTGGTGGTTGTCTTT 58.908 50.000 7.58 0.00 43.16 2.52
2410 2488 2.775351 CACGTGTGGTGGTTGTCTT 58.225 52.632 7.58 0.00 43.16 3.01
2411 2489 4.532490 CACGTGTGGTGGTTGTCT 57.468 55.556 7.58 0.00 43.16 3.41
2429 2507 3.992317 GCGGCTCCGGGTATCTCC 61.992 72.222 10.57 0.00 40.19 3.71
2430 2508 3.992317 GGCGGCTCCGGGTATCTC 61.992 72.222 10.57 0.00 40.19 2.75
2443 2521 4.069232 TGGAAGTCAGAGCGGCGG 62.069 66.667 9.78 0.00 0.00 6.13
2444 2522 2.811317 GTGGAAGTCAGAGCGGCG 60.811 66.667 0.51 0.51 0.00 6.46
2445 2523 2.811317 CGTGGAAGTCAGAGCGGC 60.811 66.667 0.00 0.00 0.00 6.53
2446 2524 2.811317 GCGTGGAAGTCAGAGCGG 60.811 66.667 0.00 0.00 0.00 5.52
2447 2525 2.811317 GGCGTGGAAGTCAGAGCG 60.811 66.667 0.00 0.00 32.95 5.03
2448 2526 2.811317 CGGCGTGGAAGTCAGAGC 60.811 66.667 0.00 0.00 0.00 4.09
2449 2527 2.125912 CCGGCGTGGAAGTCAGAG 60.126 66.667 6.01 0.00 42.00 3.35
2450 2528 4.373116 GCCGGCGTGGAAGTCAGA 62.373 66.667 12.58 0.00 42.00 3.27
2478 2556 3.188786 GTTGGCTAGGCGAGTGCG 61.189 66.667 12.19 0.00 44.10 5.34
2479 2557 3.188786 CGTTGGCTAGGCGAGTGC 61.189 66.667 12.19 0.00 41.71 4.40
2480 2558 2.571757 TCGTTGGCTAGGCGAGTG 59.428 61.111 12.19 5.64 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.