Multiple sequence alignment - TraesCS4B01G288600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G288600 chr4B 100.000 1902 0 0 1 1902 573404610 573402709 0.000000e+00 3513.0
1 TraesCS4B01G288600 chr4B 100.000 391 0 0 2180 2570 573402431 573402041 0.000000e+00 723.0
2 TraesCS4B01G288600 chr4A 93.838 714 33 4 1194 1902 9555270 9555977 0.000000e+00 1064.0
3 TraesCS4B01G288600 chr4A 86.971 614 45 8 654 1232 9554734 9555347 0.000000e+00 658.0
4 TraesCS4B01G288600 chr4A 89.258 391 35 4 2180 2570 9556266 9556649 1.380000e-132 483.0
5 TraesCS4B01G288600 chr4A 96.985 199 5 1 79 277 9554547 9554744 1.470000e-87 333.0
6 TraesCS4B01G288600 chr4D 89.489 666 36 14 1214 1859 459255739 459255088 0.000000e+00 811.0
7 TraesCS4B01G288600 chr4D 82.647 340 47 8 2233 2570 459255009 459254680 9.000000e-75 291.0
8 TraesCS4B01G288600 chr4D 90.400 125 12 0 995 1119 459255861 459255737 5.690000e-37 165.0
9 TraesCS4B01G288600 chr4D 87.692 65 4 2 657 721 459257876 459257816 3.550000e-09 73.1
10 TraesCS4B01G288600 chr6B 98.953 382 4 0 277 658 160709517 160709898 0.000000e+00 684.0
11 TraesCS4B01G288600 chr6B 97.710 393 9 0 271 663 115038465 115038857 0.000000e+00 676.0
12 TraesCS4B01G288600 chr6A 98.953 382 4 0 276 657 13877046 13876665 0.000000e+00 684.0
13 TraesCS4B01G288600 chr1B 98.214 392 5 2 271 661 6112438 6112048 0.000000e+00 684.0
14 TraesCS4B01G288600 chr7B 98.950 381 4 0 278 658 4596666 4597046 0.000000e+00 682.0
15 TraesCS4B01G288600 chr7B 98.947 380 4 0 277 656 28061157 28061536 0.000000e+00 680.0
16 TraesCS4B01G288600 chr3B 98.950 381 4 0 276 656 33340595 33340215 0.000000e+00 682.0
17 TraesCS4B01G288600 chr3B 98.947 380 4 0 278 657 231992362 231991983 0.000000e+00 680.0
18 TraesCS4B01G288600 chr5B 98.945 379 4 0 278 656 63248777 63249155 0.000000e+00 678.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G288600 chr4B 573402041 573404610 2569 True 2118.000 3513 100.000 1 2570 2 chr4B.!!$R1 2569
1 TraesCS4B01G288600 chr4A 9554547 9556649 2102 False 634.500 1064 91.763 79 2570 4 chr4A.!!$F1 2491
2 TraesCS4B01G288600 chr4D 459254680 459257876 3196 True 335.025 811 87.557 657 2570 4 chr4D.!!$R1 1913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 597 0.106149 ATGACGATTTACCGAGGGGC 59.894 55.0 0.0 0.0 36.48 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 4212 0.107017 AATCATGAAGGCCTCCCACG 60.107 55.0 5.23 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.434359 ACGCTCCGGCTAAGTTGC 60.434 61.111 0.00 0.00 36.09 4.17
18 19 2.125512 CGCTCCGGCTAAGTTGCT 60.126 61.111 0.00 0.00 36.09 3.91
19 20 2.456119 CGCTCCGGCTAAGTTGCTG 61.456 63.158 0.00 0.00 38.94 4.41
23 24 2.359850 CGGCTAAGTTGCTGGCCA 60.360 61.111 4.71 4.71 44.27 5.36
24 25 2.690778 CGGCTAAGTTGCTGGCCAC 61.691 63.158 0.00 0.00 44.27 5.01
25 26 2.343426 GGCTAAGTTGCTGGCCACC 61.343 63.158 0.00 0.00 43.59 4.61
26 27 1.303643 GCTAAGTTGCTGGCCACCT 60.304 57.895 0.00 0.00 0.00 4.00
27 28 0.895559 GCTAAGTTGCTGGCCACCTT 60.896 55.000 0.00 4.34 0.00 3.50
28 29 0.883833 CTAAGTTGCTGGCCACCTTG 59.116 55.000 0.00 0.00 0.00 3.61
29 30 1.178534 TAAGTTGCTGGCCACCTTGC 61.179 55.000 0.00 4.06 0.00 4.01
30 31 3.225798 GTTGCTGGCCACCTTGCA 61.226 61.111 13.02 13.02 33.69 4.08
31 32 2.913578 TTGCTGGCCACCTTGCAG 60.914 61.111 16.01 0.00 35.88 4.41
32 33 3.736996 TTGCTGGCCACCTTGCAGT 62.737 57.895 16.01 0.00 35.88 4.40
33 34 2.914097 GCTGGCCACCTTGCAGTT 60.914 61.111 0.00 0.00 0.00 3.16
34 35 2.924105 GCTGGCCACCTTGCAGTTC 61.924 63.158 0.00 0.00 0.00 3.01
35 36 2.203480 TGGCCACCTTGCAGTTCC 60.203 61.111 0.00 0.00 0.00 3.62
36 37 2.116125 GGCCACCTTGCAGTTCCT 59.884 61.111 0.00 0.00 0.00 3.36
37 38 1.531602 GGCCACCTTGCAGTTCCTT 60.532 57.895 0.00 0.00 0.00 3.36
38 39 1.527433 GGCCACCTTGCAGTTCCTTC 61.527 60.000 0.00 0.00 0.00 3.46
39 40 1.527433 GCCACCTTGCAGTTCCTTCC 61.527 60.000 0.00 0.00 0.00 3.46
40 41 0.111253 CCACCTTGCAGTTCCTTCCT 59.889 55.000 0.00 0.00 0.00 3.36
41 42 1.479389 CCACCTTGCAGTTCCTTCCTT 60.479 52.381 0.00 0.00 0.00 3.36
42 43 2.310538 CACCTTGCAGTTCCTTCCTTT 58.689 47.619 0.00 0.00 0.00 3.11
43 44 2.695147 CACCTTGCAGTTCCTTCCTTTT 59.305 45.455 0.00 0.00 0.00 2.27
44 45 3.132824 CACCTTGCAGTTCCTTCCTTTTT 59.867 43.478 0.00 0.00 0.00 1.94
63 64 4.991153 TTTTTATCATGGCGGTGCATAA 57.009 36.364 0.00 0.00 0.00 1.90
64 65 5.528043 TTTTTATCATGGCGGTGCATAAT 57.472 34.783 0.00 0.00 0.00 1.28
65 66 6.641169 TTTTTATCATGGCGGTGCATAATA 57.359 33.333 0.00 0.00 0.00 0.98
66 67 5.621197 TTTATCATGGCGGTGCATAATAC 57.379 39.130 0.00 0.00 0.00 1.89
67 68 1.890876 TCATGGCGGTGCATAATACC 58.109 50.000 0.00 0.00 34.81 2.73
68 69 0.881118 CATGGCGGTGCATAATACCC 59.119 55.000 0.00 0.00 34.66 3.69
69 70 0.476338 ATGGCGGTGCATAATACCCA 59.524 50.000 0.00 0.00 34.66 4.51
70 71 0.256177 TGGCGGTGCATAATACCCAA 59.744 50.000 0.00 0.00 34.66 4.12
71 72 0.951558 GGCGGTGCATAATACCCAAG 59.048 55.000 0.00 0.00 34.66 3.61
72 73 1.675552 GCGGTGCATAATACCCAAGT 58.324 50.000 0.00 0.00 34.66 3.16
73 74 1.333619 GCGGTGCATAATACCCAAGTG 59.666 52.381 0.00 0.00 34.66 3.16
74 75 1.946768 CGGTGCATAATACCCAAGTGG 59.053 52.381 0.00 0.00 41.37 4.00
75 76 2.420827 CGGTGCATAATACCCAAGTGGA 60.421 50.000 0.00 0.00 37.39 4.02
76 77 3.214328 GGTGCATAATACCCAAGTGGAG 58.786 50.000 0.00 0.00 37.39 3.86
77 78 3.371595 GGTGCATAATACCCAAGTGGAGT 60.372 47.826 0.00 0.00 37.39 3.85
78 79 4.141574 GGTGCATAATACCCAAGTGGAGTA 60.142 45.833 0.00 0.30 37.39 2.59
79 80 5.456186 GGTGCATAATACCCAAGTGGAGTAT 60.456 44.000 0.00 2.68 37.39 2.12
80 81 6.239772 GGTGCATAATACCCAAGTGGAGTATA 60.240 42.308 0.00 0.00 37.39 1.47
81 82 7.394816 GTGCATAATACCCAAGTGGAGTATAT 58.605 38.462 0.00 0.85 37.39 0.86
82 83 7.334421 GTGCATAATACCCAAGTGGAGTATATG 59.666 40.741 0.00 9.80 37.39 1.78
83 84 7.017155 TGCATAATACCCAAGTGGAGTATATGT 59.983 37.037 0.00 0.00 37.39 2.29
84 85 7.334421 GCATAATACCCAAGTGGAGTATATGTG 59.666 40.741 0.00 6.43 37.39 3.21
111 112 0.250295 CGTGGTGGCATATGGGGTAG 60.250 60.000 4.56 0.00 0.00 3.18
157 158 1.153862 GACCTGACTGAGCAGAGCG 60.154 63.158 4.21 0.00 38.14 5.03
187 188 2.648613 ATCGCCTCGATCCCACCTCT 62.649 60.000 0.00 0.00 43.45 3.69
190 191 2.060383 CCTCGATCCCACCTCTGCA 61.060 63.158 0.00 0.00 0.00 4.41
269 270 1.127766 TCGATTGATCAACCGCGTTTG 59.872 47.619 17.73 10.46 0.00 2.93
270 271 1.136085 CGATTGATCAACCGCGTTTGT 60.136 47.619 16.24 3.82 0.00 2.83
271 272 2.505866 GATTGATCAACCGCGTTTGTC 58.494 47.619 16.24 12.84 0.00 3.18
272 273 1.588674 TTGATCAACCGCGTTTGTCT 58.411 45.000 16.24 5.17 0.00 3.41
273 274 1.588674 TGATCAACCGCGTTTGTCTT 58.411 45.000 16.24 2.83 0.00 3.01
274 275 2.756829 TGATCAACCGCGTTTGTCTTA 58.243 42.857 16.24 0.00 0.00 2.10
275 276 2.477375 TGATCAACCGCGTTTGTCTTAC 59.523 45.455 16.24 5.44 0.00 2.34
276 277 2.228138 TCAACCGCGTTTGTCTTACT 57.772 45.000 16.24 0.00 0.00 2.24
277 278 2.129607 TCAACCGCGTTTGTCTTACTC 58.870 47.619 16.24 0.00 0.00 2.59
278 279 1.862201 CAACCGCGTTTGTCTTACTCA 59.138 47.619 8.38 0.00 0.00 3.41
279 280 2.228138 ACCGCGTTTGTCTTACTCAA 57.772 45.000 4.92 0.00 0.00 3.02
280 281 2.132762 ACCGCGTTTGTCTTACTCAAG 58.867 47.619 4.92 0.00 0.00 3.02
281 282 1.459592 CCGCGTTTGTCTTACTCAAGG 59.540 52.381 4.92 0.00 32.22 3.61
282 283 2.132762 CGCGTTTGTCTTACTCAAGGT 58.867 47.619 0.00 0.00 32.22 3.50
283 284 2.542595 CGCGTTTGTCTTACTCAAGGTT 59.457 45.455 0.00 0.00 32.22 3.50
284 285 3.001939 CGCGTTTGTCTTACTCAAGGTTT 59.998 43.478 0.00 0.00 32.22 3.27
285 286 4.495184 CGCGTTTGTCTTACTCAAGGTTTT 60.495 41.667 0.00 0.00 32.22 2.43
286 287 4.733405 GCGTTTGTCTTACTCAAGGTTTTG 59.267 41.667 0.00 0.00 35.57 2.44
287 288 5.270853 CGTTTGTCTTACTCAAGGTTTTGG 58.729 41.667 0.00 0.00 34.97 3.28
288 289 5.163693 CGTTTGTCTTACTCAAGGTTTTGGT 60.164 40.000 0.00 0.00 34.97 3.67
289 290 6.624204 CGTTTGTCTTACTCAAGGTTTTGGTT 60.624 38.462 0.00 0.00 34.97 3.67
290 291 7.414319 CGTTTGTCTTACTCAAGGTTTTGGTTA 60.414 37.037 0.00 0.00 34.97 2.85
291 292 6.930667 TGTCTTACTCAAGGTTTTGGTTAC 57.069 37.500 0.00 0.00 34.97 2.50
292 293 5.824097 TGTCTTACTCAAGGTTTTGGTTACC 59.176 40.000 0.00 0.00 34.97 2.85
293 294 5.049886 GTCTTACTCAAGGTTTTGGTTACCG 60.050 44.000 0.00 0.00 40.69 4.02
294 295 3.564053 ACTCAAGGTTTTGGTTACCGA 57.436 42.857 0.00 0.00 40.69 4.69
295 296 3.888583 ACTCAAGGTTTTGGTTACCGAA 58.111 40.909 0.00 0.00 40.69 4.30
296 297 4.466827 ACTCAAGGTTTTGGTTACCGAAT 58.533 39.130 4.72 0.00 40.69 3.34
297 298 4.277423 ACTCAAGGTTTTGGTTACCGAATG 59.723 41.667 4.72 0.85 40.69 2.67
298 299 4.462133 TCAAGGTTTTGGTTACCGAATGA 58.538 39.130 4.72 3.29 40.69 2.57
299 300 4.517453 TCAAGGTTTTGGTTACCGAATGAG 59.483 41.667 4.72 0.00 40.69 2.90
300 301 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
301 302 8.827078 TCAAGGTTTTGGTTACCGAATGAGGT 62.827 42.308 4.72 0.00 40.69 3.85
302 303 4.041938 AGGTTTTGGTTACCGAATGAGGTA 59.958 41.667 4.72 0.00 43.89 3.08
319 320 2.923121 GGTAATTTTACCGAGGGGGAC 58.077 52.381 3.84 0.00 43.30 4.46
320 321 2.507058 GGTAATTTTACCGAGGGGGACT 59.493 50.000 3.84 0.00 43.30 3.85
321 322 2.801077 AATTTTACCGAGGGGGACTG 57.199 50.000 0.00 0.00 39.97 3.51
322 323 1.961133 ATTTTACCGAGGGGGACTGA 58.039 50.000 0.00 0.00 39.97 3.41
323 324 1.961133 TTTTACCGAGGGGGACTGAT 58.039 50.000 0.00 0.00 39.97 2.90
324 325 2.852714 TTTACCGAGGGGGACTGATA 57.147 50.000 0.00 0.00 39.97 2.15
325 326 2.852714 TTACCGAGGGGGACTGATAA 57.147 50.000 0.00 0.00 39.97 1.75
326 327 2.852714 TACCGAGGGGGACTGATAAA 57.147 50.000 0.00 0.00 39.97 1.40
327 328 2.191981 ACCGAGGGGGACTGATAAAT 57.808 50.000 0.00 0.00 39.97 1.40
328 329 1.768870 ACCGAGGGGGACTGATAAATG 59.231 52.381 0.00 0.00 39.97 2.32
329 330 1.768870 CCGAGGGGGACTGATAAATGT 59.231 52.381 0.00 0.00 38.47 2.71
330 331 2.485479 CCGAGGGGGACTGATAAATGTG 60.485 54.545 0.00 0.00 38.47 3.21
331 332 2.485479 CGAGGGGGACTGATAAATGTGG 60.485 54.545 0.00 0.00 0.00 4.17
332 333 2.509964 GAGGGGGACTGATAAATGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
333 334 2.926329 AGGGGGACTGATAAATGTGGTT 59.074 45.455 0.00 0.00 0.00 3.67
334 335 4.116113 AGGGGGACTGATAAATGTGGTTA 58.884 43.478 0.00 0.00 0.00 2.85
335 336 4.079958 AGGGGGACTGATAAATGTGGTTAC 60.080 45.833 0.00 0.00 0.00 2.50
336 337 4.204799 GGGGACTGATAAATGTGGTTACC 58.795 47.826 0.00 0.00 0.00 2.85
337 338 4.324719 GGGGACTGATAAATGTGGTTACCA 60.325 45.833 0.00 0.00 0.00 3.25
359 360 3.508744 GGTTACCGAGAAATACCGACA 57.491 47.619 0.00 0.00 0.00 4.35
360 361 3.848726 GGTTACCGAGAAATACCGACAA 58.151 45.455 0.00 0.00 0.00 3.18
361 362 4.244862 GGTTACCGAGAAATACCGACAAA 58.755 43.478 0.00 0.00 0.00 2.83
362 363 4.872124 GGTTACCGAGAAATACCGACAAAT 59.128 41.667 0.00 0.00 0.00 2.32
363 364 5.352293 GGTTACCGAGAAATACCGACAAATT 59.648 40.000 0.00 0.00 0.00 1.82
364 365 6.456047 GGTTACCGAGAAATACCGACAAATTC 60.456 42.308 0.00 0.00 0.00 2.17
365 366 3.937079 ACCGAGAAATACCGACAAATTCC 59.063 43.478 0.00 0.00 0.00 3.01
366 367 3.000925 CCGAGAAATACCGACAAATTCCG 59.999 47.826 0.00 0.00 0.00 4.30
367 368 3.861113 CGAGAAATACCGACAAATTCCGA 59.139 43.478 0.00 0.00 0.00 4.55
368 369 4.026804 CGAGAAATACCGACAAATTCCGAG 60.027 45.833 0.00 0.00 0.00 4.63
369 370 5.080969 AGAAATACCGACAAATTCCGAGA 57.919 39.130 0.00 0.00 0.00 4.04
370 371 5.484715 AGAAATACCGACAAATTCCGAGAA 58.515 37.500 0.00 0.00 0.00 2.87
371 372 6.113411 AGAAATACCGACAAATTCCGAGAAT 58.887 36.000 0.00 0.00 0.00 2.40
372 373 7.270047 AGAAATACCGACAAATTCCGAGAATA 58.730 34.615 0.42 0.00 0.00 1.75
373 374 7.931948 AGAAATACCGACAAATTCCGAGAATAT 59.068 33.333 0.42 0.00 0.00 1.28
374 375 8.446599 AAATACCGACAAATTCCGAGAATATT 57.553 30.769 0.00 0.00 0.00 1.28
375 376 8.446599 AATACCGACAAATTCCGAGAATATTT 57.553 30.769 0.00 0.00 0.00 1.40
376 377 6.359480 ACCGACAAATTCCGAGAATATTTC 57.641 37.500 0.00 0.00 0.00 2.17
377 378 5.006358 ACCGACAAATTCCGAGAATATTTCG 59.994 40.000 10.96 10.96 37.78 3.46
378 379 5.233476 CCGACAAATTCCGAGAATATTTCGA 59.767 40.000 16.51 0.00 40.36 3.71
379 380 6.347881 CGACAAATTCCGAGAATATTTCGAG 58.652 40.000 16.51 9.84 40.36 4.04
380 381 6.049263 ACAAATTCCGAGAATATTTCGAGC 57.951 37.500 16.51 0.00 40.36 5.03
381 382 4.974103 AATTCCGAGAATATTTCGAGCG 57.026 40.909 16.51 5.82 40.36 5.03
382 383 3.703286 TTCCGAGAATATTTCGAGCGA 57.297 42.857 16.51 0.00 40.36 4.93
383 384 3.703286 TCCGAGAATATTTCGAGCGAA 57.297 42.857 16.51 0.55 40.36 4.70
384 385 4.238761 TCCGAGAATATTTCGAGCGAAT 57.761 40.909 16.51 0.37 40.36 3.34
385 386 4.617959 TCCGAGAATATTTCGAGCGAATT 58.382 39.130 16.51 5.78 40.36 2.17
386 387 5.047847 TCCGAGAATATTTCGAGCGAATTT 58.952 37.500 16.51 1.59 40.36 1.82
387 388 5.522460 TCCGAGAATATTTCGAGCGAATTTT 59.478 36.000 16.51 1.26 40.36 1.82
388 389 6.698329 TCCGAGAATATTTCGAGCGAATTTTA 59.302 34.615 16.51 0.49 40.36 1.52
389 390 7.384115 TCCGAGAATATTTCGAGCGAATTTTAT 59.616 33.333 16.51 0.00 40.36 1.40
390 391 8.644619 CCGAGAATATTTCGAGCGAATTTTATA 58.355 33.333 16.51 2.20 40.36 0.98
391 392 9.663491 CGAGAATATTTCGAGCGAATTTTATAG 57.337 33.333 6.12 0.00 40.36 1.31
399 400 9.834628 TTTCGAGCGAATTTTATAGTTGAATTT 57.165 25.926 6.12 0.00 33.79 1.82
400 401 9.834628 TTCGAGCGAATTTTATAGTTGAATTTT 57.165 25.926 0.55 0.00 0.00 1.82
401 402 9.272901 TCGAGCGAATTTTATAGTTGAATTTTG 57.727 29.630 0.00 0.00 0.00 2.44
402 403 9.272901 CGAGCGAATTTTATAGTTGAATTTTGA 57.727 29.630 0.00 0.00 0.00 2.69
437 438 8.970691 AGAAAATGAACGAATATTCAAACCAG 57.029 30.769 15.57 0.72 41.78 4.00
438 439 8.792633 AGAAAATGAACGAATATTCAAACCAGA 58.207 29.630 15.57 0.00 41.78 3.86
439 440 8.970691 AAAATGAACGAATATTCAAACCAGAG 57.029 30.769 15.57 0.00 41.78 3.35
440 441 7.921786 AATGAACGAATATTCAAACCAGAGA 57.078 32.000 15.57 0.00 41.78 3.10
441 442 6.721571 TGAACGAATATTCAAACCAGAGAC 57.278 37.500 15.57 0.00 35.65 3.36
442 443 5.642063 TGAACGAATATTCAAACCAGAGACC 59.358 40.000 15.57 0.00 35.65 3.85
443 444 5.422214 ACGAATATTCAAACCAGAGACCT 57.578 39.130 15.57 0.00 0.00 3.85
444 445 5.420409 ACGAATATTCAAACCAGAGACCTC 58.580 41.667 15.57 0.00 0.00 3.85
445 446 5.187967 ACGAATATTCAAACCAGAGACCTCT 59.812 40.000 15.57 0.00 41.37 3.69
446 447 5.751028 CGAATATTCAAACCAGAGACCTCTC 59.249 44.000 15.57 0.00 43.17 3.20
447 448 6.627087 AATATTCAAACCAGAGACCTCTCA 57.373 37.500 5.13 0.00 45.21 3.27
448 449 4.982241 ATTCAAACCAGAGACCTCTCAA 57.018 40.909 5.13 0.00 45.21 3.02
449 450 4.771114 TTCAAACCAGAGACCTCTCAAA 57.229 40.909 5.13 0.00 45.21 2.69
450 451 4.771114 TCAAACCAGAGACCTCTCAAAA 57.229 40.909 5.13 0.00 45.21 2.44
451 452 4.451900 TCAAACCAGAGACCTCTCAAAAC 58.548 43.478 5.13 0.00 45.21 2.43
452 453 4.080582 TCAAACCAGAGACCTCTCAAAACA 60.081 41.667 5.13 0.00 45.21 2.83
453 454 3.760580 ACCAGAGACCTCTCAAAACAG 57.239 47.619 5.13 0.00 45.21 3.16
454 455 2.370189 ACCAGAGACCTCTCAAAACAGG 59.630 50.000 5.13 0.00 45.21 4.00
455 456 2.634940 CCAGAGACCTCTCAAAACAGGA 59.365 50.000 5.13 0.00 45.21 3.86
456 457 3.071602 CCAGAGACCTCTCAAAACAGGAA 59.928 47.826 5.13 0.00 45.21 3.36
457 458 4.061596 CAGAGACCTCTCAAAACAGGAAC 58.938 47.826 5.13 0.00 45.21 3.62
458 459 3.970640 AGAGACCTCTCAAAACAGGAACT 59.029 43.478 5.13 0.00 45.21 3.01
459 460 5.011125 CAGAGACCTCTCAAAACAGGAACTA 59.989 44.000 5.13 0.00 45.21 2.24
460 461 5.245075 AGAGACCTCTCAAAACAGGAACTAG 59.755 44.000 5.13 0.00 45.21 2.57
461 462 4.284746 AGACCTCTCAAAACAGGAACTAGG 59.715 45.833 0.00 0.00 36.02 3.02
462 463 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
463 464 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
464 465 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
465 466 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
466 467 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
467 468 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
468 469 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
469 470 3.697619 AACAGGAACTAGGTTGCTACC 57.302 47.619 9.54 9.54 42.02 3.18
470 471 2.616524 ACAGGAACTAGGTTGCTACCA 58.383 47.619 19.71 4.87 42.02 3.25
471 472 2.976882 ACAGGAACTAGGTTGCTACCAA 59.023 45.455 19.71 0.00 42.02 3.67
472 473 3.244457 ACAGGAACTAGGTTGCTACCAAC 60.244 47.826 19.71 5.58 42.02 3.77
473 474 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
474 475 3.587506 AGGAACTAGGTTGCTACCAACAT 59.412 43.478 19.71 2.91 45.66 2.71
475 476 4.565652 AGGAACTAGGTTGCTACCAACATG 60.566 45.833 19.71 6.77 45.66 3.21
483 484 2.862541 TGCTACCAACATGCCATATCC 58.137 47.619 0.00 0.00 0.00 2.59
484 485 2.174424 TGCTACCAACATGCCATATCCA 59.826 45.455 0.00 0.00 0.00 3.41
485 486 3.221771 GCTACCAACATGCCATATCCAA 58.778 45.455 0.00 0.00 0.00 3.53
486 487 3.004734 GCTACCAACATGCCATATCCAAC 59.995 47.826 0.00 0.00 0.00 3.77
487 488 3.386932 ACCAACATGCCATATCCAACT 57.613 42.857 0.00 0.00 0.00 3.16
488 489 3.711863 ACCAACATGCCATATCCAACTT 58.288 40.909 0.00 0.00 0.00 2.66
489 490 4.095946 ACCAACATGCCATATCCAACTTT 58.904 39.130 0.00 0.00 0.00 2.66
490 491 4.160252 ACCAACATGCCATATCCAACTTTC 59.840 41.667 0.00 0.00 0.00 2.62
491 492 4.160065 CCAACATGCCATATCCAACTTTCA 59.840 41.667 0.00 0.00 0.00 2.69
492 493 5.163385 CCAACATGCCATATCCAACTTTCAT 60.163 40.000 0.00 0.00 0.00 2.57
493 494 6.342906 CAACATGCCATATCCAACTTTCATT 58.657 36.000 0.00 0.00 0.00 2.57
494 495 5.909477 ACATGCCATATCCAACTTTCATTG 58.091 37.500 0.00 0.00 0.00 2.82
495 496 4.389890 TGCCATATCCAACTTTCATTGC 57.610 40.909 0.00 0.00 0.00 3.56
496 497 3.768215 TGCCATATCCAACTTTCATTGCA 59.232 39.130 0.00 0.00 0.00 4.08
497 498 4.406326 TGCCATATCCAACTTTCATTGCAT 59.594 37.500 0.00 0.00 0.00 3.96
498 499 5.104859 TGCCATATCCAACTTTCATTGCATT 60.105 36.000 0.00 0.00 0.00 3.56
499 500 6.097981 TGCCATATCCAACTTTCATTGCATTA 59.902 34.615 0.00 0.00 0.00 1.90
500 501 6.985645 GCCATATCCAACTTTCATTGCATTAA 59.014 34.615 0.00 0.00 0.00 1.40
501 502 7.658575 GCCATATCCAACTTTCATTGCATTAAT 59.341 33.333 0.00 0.00 0.00 1.40
502 503 9.550406 CCATATCCAACTTTCATTGCATTAATT 57.450 29.630 0.00 0.00 0.00 1.40
506 507 9.807649 ATCCAACTTTCATTGCATTAATTAGAC 57.192 29.630 0.00 0.00 0.00 2.59
507 508 8.250332 TCCAACTTTCATTGCATTAATTAGACC 58.750 33.333 0.00 0.00 0.00 3.85
508 509 7.492344 CCAACTTTCATTGCATTAATTAGACCC 59.508 37.037 0.00 0.00 0.00 4.46
509 510 7.961326 ACTTTCATTGCATTAATTAGACCCT 57.039 32.000 0.00 0.00 0.00 4.34
510 511 9.474313 AACTTTCATTGCATTAATTAGACCCTA 57.526 29.630 0.00 0.00 0.00 3.53
511 512 8.903820 ACTTTCATTGCATTAATTAGACCCTAC 58.096 33.333 0.00 0.00 0.00 3.18
512 513 8.815565 TTTCATTGCATTAATTAGACCCTACA 57.184 30.769 0.00 0.00 0.00 2.74
513 514 8.995027 TTCATTGCATTAATTAGACCCTACAT 57.005 30.769 0.00 0.00 0.00 2.29
515 516 9.502091 TCATTGCATTAATTAGACCCTACATAC 57.498 33.333 0.00 0.00 0.00 2.39
516 517 8.730680 CATTGCATTAATTAGACCCTACATACC 58.269 37.037 0.00 0.00 0.00 2.73
517 518 7.626999 TGCATTAATTAGACCCTACATACCT 57.373 36.000 0.00 0.00 0.00 3.08
518 519 8.041143 TGCATTAATTAGACCCTACATACCTT 57.959 34.615 0.00 0.00 0.00 3.50
519 520 9.161572 TGCATTAATTAGACCCTACATACCTTA 57.838 33.333 0.00 0.00 0.00 2.69
520 521 9.433153 GCATTAATTAGACCCTACATACCTTAC 57.567 37.037 0.00 0.00 0.00 2.34
523 524 9.719433 TTAATTAGACCCTACATACCTTACTGT 57.281 33.333 0.00 0.00 0.00 3.55
525 526 9.719433 AATTAGACCCTACATACCTTACTGTAA 57.281 33.333 0.00 0.00 0.00 2.41
526 527 9.719433 ATTAGACCCTACATACCTTACTGTAAA 57.281 33.333 1.46 0.00 0.00 2.01
527 528 9.719433 TTAGACCCTACATACCTTACTGTAAAT 57.281 33.333 1.46 0.00 0.00 1.40
528 529 8.247666 AGACCCTACATACCTTACTGTAAATC 57.752 38.462 1.46 0.00 0.00 2.17
529 530 7.014038 AGACCCTACATACCTTACTGTAAATCG 59.986 40.741 1.46 0.00 0.00 3.34
530 531 6.835488 ACCCTACATACCTTACTGTAAATCGA 59.165 38.462 1.46 0.00 0.00 3.59
531 532 7.014038 ACCCTACATACCTTACTGTAAATCGAG 59.986 40.741 1.46 0.00 0.00 4.04
532 533 7.014038 CCCTACATACCTTACTGTAAATCGAGT 59.986 40.741 1.46 0.00 0.00 4.18
533 534 7.861372 CCTACATACCTTACTGTAAATCGAGTG 59.139 40.741 1.46 0.20 0.00 3.51
534 535 7.166691 ACATACCTTACTGTAAATCGAGTGT 57.833 36.000 1.46 0.73 0.00 3.55
535 536 7.609056 ACATACCTTACTGTAAATCGAGTGTT 58.391 34.615 1.46 0.00 0.00 3.32
536 537 8.092687 ACATACCTTACTGTAAATCGAGTGTTT 58.907 33.333 1.46 0.00 0.00 2.83
537 538 9.577110 CATACCTTACTGTAAATCGAGTGTTTA 57.423 33.333 1.46 0.00 0.00 2.01
539 540 8.891671 ACCTTACTGTAAATCGAGTGTTTAAA 57.108 30.769 1.46 0.00 0.00 1.52
540 541 9.498176 ACCTTACTGTAAATCGAGTGTTTAAAT 57.502 29.630 1.46 0.00 0.00 1.40
588 589 5.459110 TTTTGCTCGGTATGACGATTTAC 57.541 39.130 0.00 0.00 42.62 2.01
589 590 3.088194 TGCTCGGTATGACGATTTACC 57.912 47.619 0.00 0.00 42.62 2.85
594 595 3.022607 GGTATGACGATTTACCGAGGG 57.977 52.381 0.00 0.00 0.00 4.30
595 596 2.288640 GGTATGACGATTTACCGAGGGG 60.289 54.545 0.00 0.00 40.11 4.79
596 597 0.106149 ATGACGATTTACCGAGGGGC 59.894 55.000 0.00 0.00 36.48 5.80
597 598 1.259142 TGACGATTTACCGAGGGGCA 61.259 55.000 0.00 0.00 36.48 5.36
598 599 0.808847 GACGATTTACCGAGGGGCAC 60.809 60.000 0.00 0.00 36.48 5.01
599 600 1.881252 CGATTTACCGAGGGGCACG 60.881 63.158 0.00 0.00 36.48 5.34
606 607 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
607 608 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
617 618 3.615224 ACGGAAATACGTGGTAACCAT 57.385 42.857 0.00 0.00 46.64 3.55
618 619 3.264104 ACGGAAATACGTGGTAACCATG 58.736 45.455 0.00 0.00 46.64 3.66
619 620 2.610374 CGGAAATACGTGGTAACCATGG 59.390 50.000 11.19 11.19 44.23 3.66
620 621 2.946990 GGAAATACGTGGTAACCATGGG 59.053 50.000 18.09 0.00 44.23 4.00
621 622 3.370739 GGAAATACGTGGTAACCATGGGA 60.371 47.826 18.09 0.00 44.23 4.37
622 623 4.263435 GAAATACGTGGTAACCATGGGAA 58.737 43.478 18.09 0.00 44.23 3.97
623 624 4.304048 AATACGTGGTAACCATGGGAAA 57.696 40.909 18.09 0.00 44.23 3.13
624 625 2.891191 ACGTGGTAACCATGGGAAAT 57.109 45.000 18.09 1.59 44.23 2.17
625 626 2.718563 ACGTGGTAACCATGGGAAATC 58.281 47.619 18.09 1.35 44.23 2.17
626 627 2.307686 ACGTGGTAACCATGGGAAATCT 59.692 45.455 18.09 0.00 44.23 2.40
627 628 3.245122 ACGTGGTAACCATGGGAAATCTT 60.245 43.478 18.09 2.18 44.23 2.40
628 629 3.128589 CGTGGTAACCATGGGAAATCTTG 59.871 47.826 18.09 0.00 36.92 3.02
629 630 4.340617 GTGGTAACCATGGGAAATCTTGA 58.659 43.478 18.09 0.00 35.28 3.02
630 631 4.770010 GTGGTAACCATGGGAAATCTTGAA 59.230 41.667 18.09 0.00 35.28 2.69
631 632 5.245075 GTGGTAACCATGGGAAATCTTGAAA 59.755 40.000 18.09 0.00 35.28 2.69
632 633 6.022315 TGGTAACCATGGGAAATCTTGAAAT 58.978 36.000 18.09 0.00 0.00 2.17
633 634 6.500049 TGGTAACCATGGGAAATCTTGAAATT 59.500 34.615 18.09 0.00 0.00 1.82
634 635 7.017056 TGGTAACCATGGGAAATCTTGAAATTT 59.983 33.333 18.09 0.00 0.00 1.82
635 636 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
636 637 5.723295 ACCATGGGAAATCTTGAAATTTCG 58.277 37.500 18.09 0.46 43.52 3.46
637 638 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
638 639 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
639 640 6.350445 CCATGGGAAATCTTGAAATTTCGACT 60.350 38.462 13.34 0.00 43.52 4.18
640 641 6.012658 TGGGAAATCTTGAAATTTCGACTG 57.987 37.500 13.34 1.46 43.52 3.51
641 642 5.048083 TGGGAAATCTTGAAATTTCGACTGG 60.048 40.000 13.34 0.77 43.52 4.00
642 643 5.048013 GGGAAATCTTGAAATTTCGACTGGT 60.048 40.000 13.34 0.00 43.52 4.00
643 644 6.150474 GGGAAATCTTGAAATTTCGACTGGTA 59.850 38.462 13.34 0.00 43.52 3.25
644 645 7.308951 GGGAAATCTTGAAATTTCGACTGGTAA 60.309 37.037 13.34 0.00 43.52 2.85
645 646 7.537649 GGAAATCTTGAAATTTCGACTGGTAAC 59.462 37.037 13.34 1.06 43.52 2.50
646 647 5.934935 TCTTGAAATTTCGACTGGTAACC 57.065 39.130 13.34 0.00 0.00 2.85
647 648 5.369833 TCTTGAAATTTCGACTGGTAACCA 58.630 37.500 13.34 0.00 0.00 3.67
648 649 5.823570 TCTTGAAATTTCGACTGGTAACCAA 59.176 36.000 13.34 0.00 30.80 3.67
649 650 6.319152 TCTTGAAATTTCGACTGGTAACCAAA 59.681 34.615 13.34 0.00 30.80 3.28
650 651 6.452494 TGAAATTTCGACTGGTAACCAAAA 57.548 33.333 13.34 0.00 30.80 2.44
651 652 6.267070 TGAAATTTCGACTGGTAACCAAAAC 58.733 36.000 13.34 0.00 30.80 2.43
652 653 4.841443 ATTTCGACTGGTAACCAAAACC 57.159 40.909 0.00 0.00 37.53 3.27
653 654 3.564053 TTCGACTGGTAACCAAAACCT 57.436 42.857 0.00 0.00 37.91 3.50
654 655 3.564053 TCGACTGGTAACCAAAACCTT 57.436 42.857 0.00 0.00 37.91 3.50
655 656 3.207778 TCGACTGGTAACCAAAACCTTG 58.792 45.455 0.00 0.00 37.91 3.61
685 686 2.027625 AGCTGGCGCTGTACGTTTC 61.028 57.895 7.64 0.00 46.86 2.78
727 738 5.731406 GCAGAGATAGATCAGAGATCGATGC 60.731 48.000 0.54 0.00 32.60 3.91
743 2455 4.523083 TCGATGCCCAAAAGCTAATTACT 58.477 39.130 0.00 0.00 0.00 2.24
744 2456 4.574828 TCGATGCCCAAAAGCTAATTACTC 59.425 41.667 0.00 0.00 0.00 2.59
762 2474 0.820226 TCCTTGATCAGCCAGAGACG 59.180 55.000 0.00 0.00 0.00 4.18
786 2499 2.395654 GAAGTCCTCGTGTTCACTCAC 58.604 52.381 1.53 0.00 35.28 3.51
798 2511 4.620184 GTGTTCACTCACTGGTATTCGTAC 59.380 45.833 0.00 0.00 35.68 3.67
799 2512 3.752412 TCACTCACTGGTATTCGTACG 57.248 47.619 9.53 9.53 0.00 3.67
800 2513 3.076621 TCACTCACTGGTATTCGTACGT 58.923 45.455 16.05 0.00 0.00 3.57
801 2514 3.120095 TCACTCACTGGTATTCGTACGTG 60.120 47.826 16.05 3.46 0.00 4.49
905 2624 2.425592 CAACTCCAGCACGTCCCA 59.574 61.111 0.00 0.00 0.00 4.37
912 2631 0.179073 CCAGCACGTCCCATTCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
915 2634 1.972660 GCACGTCCCATTCTAGGCCT 61.973 60.000 11.78 11.78 0.00 5.19
917 2636 1.065418 CACGTCCCATTCTAGGCCTTT 60.065 52.381 12.58 0.00 0.00 3.11
976 2697 1.079197 TGCATCCACACTGCCGTAG 60.079 57.895 0.00 0.00 38.89 3.51
978 2699 1.815421 CATCCACACTGCCGTAGCC 60.815 63.158 0.00 0.00 38.69 3.93
979 2700 3.371097 ATCCACACTGCCGTAGCCG 62.371 63.158 0.00 0.00 38.69 5.52
989 2710 2.677003 CCGTAGCCGTGCCAAACAG 61.677 63.158 0.00 0.00 0.00 3.16
993 2714 0.970640 TAGCCGTGCCAAACAGAGTA 59.029 50.000 0.00 0.00 0.00 2.59
1017 2738 1.522092 GATGGACATGAGGCCGTCA 59.478 57.895 16.11 8.75 39.48 4.35
1020 2741 1.153549 GGACATGAGGCCGTCACTC 60.154 63.158 10.22 6.90 38.28 3.51
1022 2743 1.888436 GACATGAGGCCGTCACTCCA 61.888 60.000 0.00 0.00 38.28 3.86
1054 2775 1.605058 GCTCCTACTCGCCACCTTCA 61.605 60.000 0.00 0.00 0.00 3.02
1142 2863 2.203294 GGCTTGGACACCCGTGTT 60.203 61.111 1.33 0.00 45.05 3.32
1184 2905 4.338327 GTGGTCGTCAGTGTCCAC 57.662 61.111 11.32 11.32 42.40 4.02
1185 2906 1.660575 GTGGTCGTCAGTGTCCACG 60.661 63.158 11.32 5.46 40.36 4.94
1186 2907 2.733593 GGTCGTCAGTGTCCACGC 60.734 66.667 0.00 0.00 35.93 5.34
1187 2908 2.733593 GTCGTCAGTGTCCACGCC 60.734 66.667 0.00 0.00 35.93 5.68
1188 2909 4.337060 TCGTCAGTGTCCACGCCG 62.337 66.667 0.00 0.00 35.93 6.46
1597 3330 2.242564 CGATATATCGTGCACTCGTGG 58.757 52.381 23.97 0.00 44.74 4.94
1598 3331 2.596452 GATATATCGTGCACTCGTGGG 58.404 52.381 16.19 0.00 0.00 4.61
1599 3332 1.682740 TATATCGTGCACTCGTGGGA 58.317 50.000 16.19 3.63 0.00 4.37
1600 3333 0.102481 ATATCGTGCACTCGTGGGAC 59.898 55.000 16.19 0.00 0.00 4.46
1681 3415 6.983474 TCTTTCGTGATTTGCATCAGAATA 57.017 33.333 0.00 0.00 40.28 1.75
1726 3460 8.321650 ACTGATCAATTGTTGTTTTGTTGTTT 57.678 26.923 5.13 0.00 0.00 2.83
1727 3461 8.442384 ACTGATCAATTGTTGTTTTGTTGTTTC 58.558 29.630 5.13 0.00 0.00 2.78
1729 3463 9.645059 TGATCAATTGTTGTTTTGTTGTTTCTA 57.355 25.926 5.13 0.00 0.00 2.10
1733 3467 9.904647 CAATTGTTGTTTTGTTGTTTCTATCTG 57.095 29.630 0.00 0.00 0.00 2.90
1761 3495 7.345653 TCCTCAGTTTATCCATACTCAACTCAT 59.654 37.037 0.00 0.00 0.00 2.90
1764 3498 7.125659 TCAGTTTATCCATACTCAACTCATCCA 59.874 37.037 0.00 0.00 0.00 3.41
1806 3540 2.599082 CCGAGAGTTAACTCAATCGTGC 59.401 50.000 31.80 13.79 45.21 5.34
1836 3573 5.023533 ACAACTCTTCTGCTTCTGTGTTA 57.976 39.130 0.00 0.00 0.00 2.41
1860 3598 5.042463 TCTCATTTTGTCACCTTGTGGTA 57.958 39.130 0.00 0.00 46.60 3.25
1883 3624 4.326826 TGGGTGCTTCTCTTTTGAGTATG 58.673 43.478 0.00 0.00 46.30 2.39
1892 3633 9.319143 GCTTCTCTTTTGAGTATGAAGCTATAA 57.681 33.333 15.45 0.00 46.30 0.98
2241 3993 1.379977 CCTACCACGGCTCTCCTCA 60.380 63.158 0.00 0.00 0.00 3.86
2323 4075 1.523711 CCCCGGGATCGACACAATG 60.524 63.158 26.32 0.00 39.00 2.82
2337 4089 5.128008 TCGACACAATGTGGATCTAACCATA 59.872 40.000 18.37 0.00 42.17 2.74
2351 4103 6.464530 TCTAACCATATCCACTAGCCTCTA 57.535 41.667 0.00 0.00 0.00 2.43
2360 4112 8.629158 CATATCCACTAGCCTCTACATAGAATC 58.371 40.741 0.00 0.00 0.00 2.52
2368 4120 4.142271 GCCTCTACATAGAATCGATCCCAG 60.142 50.000 0.00 0.00 0.00 4.45
2387 4139 3.499918 CCAGGAACACTAAAGCTTCACAG 59.500 47.826 0.00 0.00 0.00 3.66
2417 4169 1.925946 GCCAAAACGTGTCTGTCATGC 60.926 52.381 0.00 0.00 36.60 4.06
2441 4193 6.023435 CGGAACAATTGATATCACAACACAG 58.977 40.000 13.59 0.00 32.50 3.66
2444 4196 7.699391 GGAACAATTGATATCACAACACAGATG 59.301 37.037 13.59 0.00 32.50 2.90
2453 4205 4.980590 TCACAACACAGATGACAAAACAC 58.019 39.130 0.00 0.00 0.00 3.32
2454 4206 3.785521 CACAACACAGATGACAAAACACG 59.214 43.478 0.00 0.00 0.00 4.49
2460 4212 3.187227 ACAGATGACAAAACACGATCTGC 59.813 43.478 0.00 0.00 37.99 4.26
2477 4229 2.989639 CGTGGGAGGCCTTCATGA 59.010 61.111 14.70 0.00 0.00 3.07
2479 4231 0.107017 CGTGGGAGGCCTTCATGATT 60.107 55.000 14.70 0.00 0.00 2.57
2480 4232 1.140852 CGTGGGAGGCCTTCATGATTA 59.859 52.381 14.70 0.00 0.00 1.75
2544 4296 4.047166 ACATGATTCTCCCCCTATTGTGA 58.953 43.478 0.00 0.00 0.00 3.58
2554 4306 3.716872 CCCCCTATTGTGACAGTCCTATT 59.283 47.826 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.125512 AGCAACTTAGCCGGAGCG 60.126 61.111 5.05 0.00 46.67 5.03
2 3 2.109126 CCAGCAACTTAGCCGGAGC 61.109 63.158 5.05 0.00 33.84 4.70
3 4 2.109126 GCCAGCAACTTAGCCGGAG 61.109 63.158 5.05 0.00 33.84 4.63
4 5 2.046314 GCCAGCAACTTAGCCGGA 60.046 61.111 5.05 0.00 33.84 5.14
5 6 3.134127 GGCCAGCAACTTAGCCGG 61.134 66.667 0.00 0.00 35.30 6.13
7 8 2.343426 GGTGGCCAGCAACTTAGCC 61.343 63.158 29.70 8.88 45.96 3.93
8 9 0.895559 AAGGTGGCCAGCAACTTAGC 60.896 55.000 34.87 7.14 0.00 3.09
9 10 0.883833 CAAGGTGGCCAGCAACTTAG 59.116 55.000 34.87 14.51 0.00 2.18
10 11 1.178534 GCAAGGTGGCCAGCAACTTA 61.179 55.000 34.87 0.00 0.00 2.24
11 12 2.501602 GCAAGGTGGCCAGCAACTT 61.502 57.895 34.87 19.01 0.00 2.66
12 13 2.914097 GCAAGGTGGCCAGCAACT 60.914 61.111 34.87 17.19 0.00 3.16
13 14 3.216944 CTGCAAGGTGGCCAGCAAC 62.217 63.158 34.87 23.26 36.64 4.17
14 15 2.913578 CTGCAAGGTGGCCAGCAA 60.914 61.111 34.87 16.99 36.64 3.91
15 16 3.736996 AACTGCAAGGTGGCCAGCA 62.737 57.895 34.87 25.12 39.30 4.41
16 17 2.914097 AACTGCAAGGTGGCCAGC 60.914 61.111 27.66 27.66 39.30 4.85
17 18 2.270986 GGAACTGCAAGGTGGCCAG 61.271 63.158 5.11 0.00 39.30 4.85
18 19 2.203480 GGAACTGCAAGGTGGCCA 60.203 61.111 0.00 0.00 39.30 5.36
19 20 1.527433 GAAGGAACTGCAAGGTGGCC 61.527 60.000 0.00 0.00 40.86 5.36
20 21 1.527433 GGAAGGAACTGCAAGGTGGC 61.527 60.000 0.00 0.00 40.86 5.01
21 22 0.111253 AGGAAGGAACTGCAAGGTGG 59.889 55.000 0.00 0.00 40.86 4.61
22 23 1.986882 AAGGAAGGAACTGCAAGGTG 58.013 50.000 0.00 0.00 40.86 4.00
23 24 2.755952 AAAGGAAGGAACTGCAAGGT 57.244 45.000 0.00 0.00 40.86 3.50
42 43 4.991153 TTATGCACCGCCATGATAAAAA 57.009 36.364 0.00 0.00 0.00 1.94
43 44 5.048364 GGTATTATGCACCGCCATGATAAAA 60.048 40.000 0.00 0.00 0.00 1.52
44 45 4.457603 GGTATTATGCACCGCCATGATAAA 59.542 41.667 0.00 0.00 0.00 1.40
45 46 4.006989 GGTATTATGCACCGCCATGATAA 58.993 43.478 0.00 0.00 0.00 1.75
46 47 3.605634 GGTATTATGCACCGCCATGATA 58.394 45.455 0.00 0.00 0.00 2.15
47 48 2.436417 GGTATTATGCACCGCCATGAT 58.564 47.619 0.00 0.00 0.00 2.45
48 49 1.544537 GGGTATTATGCACCGCCATGA 60.545 52.381 0.00 0.00 36.89 3.07
49 50 0.881118 GGGTATTATGCACCGCCATG 59.119 55.000 0.00 0.00 36.89 3.66
50 51 0.476338 TGGGTATTATGCACCGCCAT 59.524 50.000 0.00 0.00 36.89 4.40
51 52 0.256177 TTGGGTATTATGCACCGCCA 59.744 50.000 0.00 0.00 36.89 5.69
52 53 0.951558 CTTGGGTATTATGCACCGCC 59.048 55.000 0.00 0.00 36.89 6.13
53 54 1.333619 CACTTGGGTATTATGCACCGC 59.666 52.381 0.00 0.00 36.89 5.68
54 55 1.946768 CCACTTGGGTATTATGCACCG 59.053 52.381 0.00 0.00 36.89 4.94
55 56 3.214328 CTCCACTTGGGTATTATGCACC 58.786 50.000 0.00 0.00 38.11 5.01
56 57 3.886123 ACTCCACTTGGGTATTATGCAC 58.114 45.455 0.00 0.00 38.11 4.57
57 58 5.904984 ATACTCCACTTGGGTATTATGCA 57.095 39.130 0.00 0.00 38.11 3.96
58 59 7.334421 CACATATACTCCACTTGGGTATTATGC 59.666 40.741 12.08 0.00 35.07 3.14
59 60 8.593679 TCACATATACTCCACTTGGGTATTATG 58.406 37.037 12.08 13.61 35.07 1.90
60 61 8.736097 TCACATATACTCCACTTGGGTATTAT 57.264 34.615 12.08 1.58 35.07 1.28
61 62 8.593679 CATCACATATACTCCACTTGGGTATTA 58.406 37.037 12.08 3.53 35.07 0.98
62 63 7.072454 ACATCACATATACTCCACTTGGGTATT 59.928 37.037 12.08 2.61 35.07 1.89
63 64 6.558775 ACATCACATATACTCCACTTGGGTAT 59.441 38.462 11.72 11.72 36.36 2.73
64 65 5.903010 ACATCACATATACTCCACTTGGGTA 59.097 40.000 0.00 0.00 38.11 3.69
65 66 4.721776 ACATCACATATACTCCACTTGGGT 59.278 41.667 0.00 0.00 38.11 4.51
66 67 5.059161 CACATCACATATACTCCACTTGGG 58.941 45.833 0.00 0.00 35.41 4.12
67 68 4.512944 GCACATCACATATACTCCACTTGG 59.487 45.833 0.00 0.00 0.00 3.61
68 69 4.209911 CGCACATCACATATACTCCACTTG 59.790 45.833 0.00 0.00 0.00 3.16
69 70 4.371786 CGCACATCACATATACTCCACTT 58.628 43.478 0.00 0.00 0.00 3.16
70 71 3.800261 GCGCACATCACATATACTCCACT 60.800 47.826 0.30 0.00 0.00 4.00
71 72 2.476619 GCGCACATCACATATACTCCAC 59.523 50.000 0.30 0.00 0.00 4.02
72 73 2.754472 GCGCACATCACATATACTCCA 58.246 47.619 0.30 0.00 0.00 3.86
73 74 1.721389 CGCGCACATCACATATACTCC 59.279 52.381 8.75 0.00 0.00 3.85
74 75 2.153817 CACGCGCACATCACATATACTC 59.846 50.000 5.73 0.00 0.00 2.59
75 76 2.127251 CACGCGCACATCACATATACT 58.873 47.619 5.73 0.00 0.00 2.12
76 77 1.192312 CCACGCGCACATCACATATAC 59.808 52.381 5.73 0.00 0.00 1.47
77 78 1.202475 ACCACGCGCACATCACATATA 60.202 47.619 5.73 0.00 0.00 0.86
78 79 0.461870 ACCACGCGCACATCACATAT 60.462 50.000 5.73 0.00 0.00 1.78
79 80 1.079474 ACCACGCGCACATCACATA 60.079 52.632 5.73 0.00 0.00 2.29
80 81 2.358615 ACCACGCGCACATCACAT 60.359 55.556 5.73 0.00 0.00 3.21
81 82 3.345011 CACCACGCGCACATCACA 61.345 61.111 5.73 0.00 0.00 3.58
82 83 4.088762 CCACCACGCGCACATCAC 62.089 66.667 5.73 0.00 0.00 3.06
111 112 4.864247 ACCAATATTTTGCGAGAAATGCAC 59.136 37.500 0.00 0.00 43.10 4.57
157 158 1.522580 GAGGCGATTGACCTGCTCC 60.523 63.158 1.11 0.00 37.77 4.70
190 191 3.771160 CTACGGCCGGGCTGAACT 61.771 66.667 33.58 14.53 38.46 3.01
269 270 5.049886 CGGTAACCAAAACCTTGAGTAAGAC 60.050 44.000 0.00 0.00 35.92 3.01
270 271 5.058490 CGGTAACCAAAACCTTGAGTAAGA 58.942 41.667 0.00 0.00 35.92 2.10
271 272 5.058490 TCGGTAACCAAAACCTTGAGTAAG 58.942 41.667 0.00 0.00 34.14 2.34
272 273 5.033589 TCGGTAACCAAAACCTTGAGTAA 57.966 39.130 0.00 0.00 34.14 2.24
273 274 4.686191 TCGGTAACCAAAACCTTGAGTA 57.314 40.909 0.00 0.00 34.14 2.59
274 275 3.564053 TCGGTAACCAAAACCTTGAGT 57.436 42.857 0.00 0.00 34.14 3.41
275 276 4.517453 TCATTCGGTAACCAAAACCTTGAG 59.483 41.667 0.00 0.00 34.14 3.02
276 277 4.462133 TCATTCGGTAACCAAAACCTTGA 58.538 39.130 0.00 0.00 34.14 3.02
277 278 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
278 279 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
279 280 3.181437 ACCTCATTCGGTAACCAAAACCT 60.181 43.478 0.00 0.00 34.94 3.50
280 281 3.151554 ACCTCATTCGGTAACCAAAACC 58.848 45.455 0.00 0.00 34.94 3.27
281 282 5.945466 TTACCTCATTCGGTAACCAAAAC 57.055 39.130 0.00 0.00 42.88 2.43
300 301 3.198417 TCAGTCCCCCTCGGTAAAATTAC 59.802 47.826 0.00 0.00 0.00 1.89
301 302 3.452878 TCAGTCCCCCTCGGTAAAATTA 58.547 45.455 0.00 0.00 0.00 1.40
302 303 2.271777 TCAGTCCCCCTCGGTAAAATT 58.728 47.619 0.00 0.00 0.00 1.82
303 304 1.961133 TCAGTCCCCCTCGGTAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
304 305 1.961133 ATCAGTCCCCCTCGGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
305 306 2.852714 TATCAGTCCCCCTCGGTAAA 57.147 50.000 0.00 0.00 0.00 2.01
306 307 2.852714 TTATCAGTCCCCCTCGGTAA 57.147 50.000 0.00 0.00 0.00 2.85
307 308 2.852714 TTTATCAGTCCCCCTCGGTA 57.147 50.000 0.00 0.00 0.00 4.02
308 309 1.768870 CATTTATCAGTCCCCCTCGGT 59.231 52.381 0.00 0.00 0.00 4.69
309 310 1.768870 ACATTTATCAGTCCCCCTCGG 59.231 52.381 0.00 0.00 0.00 4.63
310 311 2.485479 CCACATTTATCAGTCCCCCTCG 60.485 54.545 0.00 0.00 0.00 4.63
311 312 2.509964 ACCACATTTATCAGTCCCCCTC 59.490 50.000 0.00 0.00 0.00 4.30
312 313 2.573463 ACCACATTTATCAGTCCCCCT 58.427 47.619 0.00 0.00 0.00 4.79
313 314 3.382083 AACCACATTTATCAGTCCCCC 57.618 47.619 0.00 0.00 0.00 5.40
314 315 4.204799 GGTAACCACATTTATCAGTCCCC 58.795 47.826 0.00 0.00 0.00 4.81
315 316 4.850680 TGGTAACCACATTTATCAGTCCC 58.149 43.478 0.00 0.00 0.00 4.46
339 340 3.508744 TGTCGGTATTTCTCGGTAACC 57.491 47.619 0.00 0.00 0.00 2.85
340 341 6.413018 AATTTGTCGGTATTTCTCGGTAAC 57.587 37.500 0.00 0.00 0.00 2.50
341 342 5.581874 GGAATTTGTCGGTATTTCTCGGTAA 59.418 40.000 0.00 0.00 0.00 2.85
342 343 5.111293 GGAATTTGTCGGTATTTCTCGGTA 58.889 41.667 0.00 0.00 0.00 4.02
343 344 3.937079 GGAATTTGTCGGTATTTCTCGGT 59.063 43.478 0.00 0.00 0.00 4.69
344 345 3.000925 CGGAATTTGTCGGTATTTCTCGG 59.999 47.826 0.00 0.00 0.00 4.63
345 346 3.861113 TCGGAATTTGTCGGTATTTCTCG 59.139 43.478 0.00 0.00 0.00 4.04
346 347 5.107133 TCTCGGAATTTGTCGGTATTTCTC 58.893 41.667 0.00 0.00 0.00 2.87
347 348 5.080969 TCTCGGAATTTGTCGGTATTTCT 57.919 39.130 0.00 0.00 0.00 2.52
348 349 5.789710 TTCTCGGAATTTGTCGGTATTTC 57.210 39.130 0.00 0.00 0.00 2.17
349 350 8.446599 AATATTCTCGGAATTTGTCGGTATTT 57.553 30.769 4.76 0.00 0.00 1.40
350 351 8.446599 AAATATTCTCGGAATTTGTCGGTATT 57.553 30.769 4.76 0.00 0.00 1.89
351 352 7.095774 CGAAATATTCTCGGAATTTGTCGGTAT 60.096 37.037 15.30 0.00 32.62 2.73
352 353 6.199531 CGAAATATTCTCGGAATTTGTCGGTA 59.800 38.462 15.30 0.00 32.62 4.02
353 354 5.006358 CGAAATATTCTCGGAATTTGTCGGT 59.994 40.000 15.30 0.00 32.62 4.69
354 355 5.233476 TCGAAATATTCTCGGAATTTGTCGG 59.767 40.000 19.26 9.15 36.93 4.79
355 356 6.268797 TCGAAATATTCTCGGAATTTGTCG 57.731 37.500 16.21 16.21 36.93 4.35
356 357 6.130058 GCTCGAAATATTCTCGGAATTTGTC 58.870 40.000 15.30 2.28 36.93 3.18
357 358 5.276868 CGCTCGAAATATTCTCGGAATTTGT 60.277 40.000 15.30 0.00 36.93 2.83
358 359 5.051039 TCGCTCGAAATATTCTCGGAATTTG 60.051 40.000 15.30 5.51 36.93 2.32
359 360 5.047847 TCGCTCGAAATATTCTCGGAATTT 58.952 37.500 15.30 0.00 36.93 1.82
360 361 4.617959 TCGCTCGAAATATTCTCGGAATT 58.382 39.130 15.30 0.00 36.93 2.17
361 362 4.238761 TCGCTCGAAATATTCTCGGAAT 57.761 40.909 15.30 4.82 36.93 3.01
362 363 3.703286 TCGCTCGAAATATTCTCGGAA 57.297 42.857 15.30 0.00 36.93 4.30
363 364 3.703286 TTCGCTCGAAATATTCTCGGA 57.297 42.857 15.30 6.72 36.93 4.55
364 365 4.974103 AATTCGCTCGAAATATTCTCGG 57.026 40.909 8.84 9.94 37.69 4.63
365 366 9.663491 CTATAAAATTCGCTCGAAATATTCTCG 57.337 33.333 8.84 11.44 37.69 4.04
373 374 9.834628 AAATTCAACTATAAAATTCGCTCGAAA 57.165 25.926 8.84 0.00 37.69 3.46
374 375 9.834628 AAAATTCAACTATAAAATTCGCTCGAA 57.165 25.926 7.19 7.19 38.59 3.71
375 376 9.272901 CAAAATTCAACTATAAAATTCGCTCGA 57.727 29.630 0.00 0.00 0.00 4.04
376 377 9.272901 TCAAAATTCAACTATAAAATTCGCTCG 57.727 29.630 0.00 0.00 0.00 5.03
411 412 9.410556 CTGGTTTGAATATTCGTTCATTTTCTT 57.589 29.630 10.80 0.00 37.88 2.52
412 413 8.792633 TCTGGTTTGAATATTCGTTCATTTTCT 58.207 29.630 10.80 0.00 37.88 2.52
413 414 8.964420 TCTGGTTTGAATATTCGTTCATTTTC 57.036 30.769 10.80 0.00 37.88 2.29
414 415 8.792633 TCTCTGGTTTGAATATTCGTTCATTTT 58.207 29.630 10.80 0.00 37.88 1.82
415 416 8.237267 GTCTCTGGTTTGAATATTCGTTCATTT 58.763 33.333 10.80 0.00 37.88 2.32
416 417 7.148239 GGTCTCTGGTTTGAATATTCGTTCATT 60.148 37.037 10.80 0.00 37.88 2.57
417 418 6.316390 GGTCTCTGGTTTGAATATTCGTTCAT 59.684 38.462 10.80 0.00 37.88 2.57
418 419 5.642063 GGTCTCTGGTTTGAATATTCGTTCA 59.358 40.000 10.80 5.87 36.38 3.18
419 420 5.875359 AGGTCTCTGGTTTGAATATTCGTTC 59.125 40.000 10.80 3.54 0.00 3.95
420 421 5.805728 AGGTCTCTGGTTTGAATATTCGTT 58.194 37.500 10.80 0.00 0.00 3.85
421 422 5.187967 AGAGGTCTCTGGTTTGAATATTCGT 59.812 40.000 10.80 0.00 38.75 3.85
422 423 5.665459 AGAGGTCTCTGGTTTGAATATTCG 58.335 41.667 10.80 0.00 38.75 3.34
423 424 6.644347 TGAGAGGTCTCTGGTTTGAATATTC 58.356 40.000 8.60 8.60 43.25 1.75
424 425 6.627087 TGAGAGGTCTCTGGTTTGAATATT 57.373 37.500 5.09 0.00 43.25 1.28
425 426 6.627087 TTGAGAGGTCTCTGGTTTGAATAT 57.373 37.500 5.09 0.00 43.25 1.28
426 427 6.433847 TTTGAGAGGTCTCTGGTTTGAATA 57.566 37.500 5.09 0.00 43.25 1.75
427 428 4.982241 TTGAGAGGTCTCTGGTTTGAAT 57.018 40.909 5.09 0.00 43.25 2.57
428 429 4.771114 TTTGAGAGGTCTCTGGTTTGAA 57.229 40.909 5.09 0.00 43.25 2.69
429 430 4.080582 TGTTTTGAGAGGTCTCTGGTTTGA 60.081 41.667 5.09 0.00 43.25 2.69
430 431 4.199310 TGTTTTGAGAGGTCTCTGGTTTG 58.801 43.478 5.09 0.00 43.25 2.93
431 432 4.455606 CTGTTTTGAGAGGTCTCTGGTTT 58.544 43.478 5.09 0.00 43.25 3.27
432 433 3.181450 CCTGTTTTGAGAGGTCTCTGGTT 60.181 47.826 5.09 0.00 43.25 3.67
433 434 2.370189 CCTGTTTTGAGAGGTCTCTGGT 59.630 50.000 5.09 0.00 43.25 4.00
434 435 2.634940 TCCTGTTTTGAGAGGTCTCTGG 59.365 50.000 5.09 0.00 43.25 3.86
435 436 4.061596 GTTCCTGTTTTGAGAGGTCTCTG 58.938 47.826 5.09 0.00 43.25 3.35
436 437 3.970640 AGTTCCTGTTTTGAGAGGTCTCT 59.029 43.478 8.44 0.00 43.25 3.10
437 438 4.344359 AGTTCCTGTTTTGAGAGGTCTC 57.656 45.455 0.00 0.00 43.15 3.36
438 439 4.284746 CCTAGTTCCTGTTTTGAGAGGTCT 59.715 45.833 0.00 0.00 0.00 3.85
439 440 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
440 441 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
441 442 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
442 443 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
443 444 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
444 445 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
445 446 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
446 447 4.215613 GGTAGCAACCTAGTTCCTGTTTTG 59.784 45.833 0.00 0.00 43.08 2.44
447 448 4.141344 TGGTAGCAACCTAGTTCCTGTTTT 60.141 41.667 0.00 0.00 46.91 2.43
448 449 3.393278 TGGTAGCAACCTAGTTCCTGTTT 59.607 43.478 0.00 0.00 46.91 2.83
449 450 2.976882 TGGTAGCAACCTAGTTCCTGTT 59.023 45.455 0.00 0.00 46.91 3.16
450 451 2.616524 TGGTAGCAACCTAGTTCCTGT 58.383 47.619 0.00 0.00 46.91 4.00
451 452 3.244422 TGTTGGTAGCAACCTAGTTCCTG 60.244 47.826 29.46 0.00 46.91 3.86
452 453 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
453 454 3.412237 TGTTGGTAGCAACCTAGTTCC 57.588 47.619 29.46 7.82 46.91 3.62
454 455 3.127030 GCATGTTGGTAGCAACCTAGTTC 59.873 47.826 29.46 12.55 46.91 3.01
455 456 3.081804 GCATGTTGGTAGCAACCTAGTT 58.918 45.455 29.46 10.75 46.91 2.24
456 457 2.618045 GGCATGTTGGTAGCAACCTAGT 60.618 50.000 29.46 13.78 46.91 2.57
457 458 2.017049 GGCATGTTGGTAGCAACCTAG 58.983 52.381 29.46 20.86 46.91 3.02
458 459 1.352687 TGGCATGTTGGTAGCAACCTA 59.647 47.619 29.46 16.07 46.91 3.08
459 460 0.112218 TGGCATGTTGGTAGCAACCT 59.888 50.000 29.46 20.04 46.91 3.50
460 461 1.185315 ATGGCATGTTGGTAGCAACC 58.815 50.000 29.46 17.64 46.98 3.77
461 462 3.004734 GGATATGGCATGTTGGTAGCAAC 59.995 47.826 26.90 26.90 35.75 4.17
462 463 3.221771 GGATATGGCATGTTGGTAGCAA 58.778 45.455 10.98 2.54 0.00 3.91
463 464 2.174424 TGGATATGGCATGTTGGTAGCA 59.826 45.455 10.98 0.00 0.00 3.49
464 465 2.862541 TGGATATGGCATGTTGGTAGC 58.137 47.619 10.98 0.00 0.00 3.58
465 466 4.464008 AGTTGGATATGGCATGTTGGTAG 58.536 43.478 10.98 0.00 0.00 3.18
466 467 4.518278 AGTTGGATATGGCATGTTGGTA 57.482 40.909 10.98 0.00 0.00 3.25
467 468 3.386932 AGTTGGATATGGCATGTTGGT 57.613 42.857 10.98 0.00 0.00 3.67
468 469 4.160065 TGAAAGTTGGATATGGCATGTTGG 59.840 41.667 10.98 0.00 0.00 3.77
469 470 5.327616 TGAAAGTTGGATATGGCATGTTG 57.672 39.130 10.98 0.00 0.00 3.33
470 471 6.342906 CAATGAAAGTTGGATATGGCATGTT 58.657 36.000 10.98 0.00 0.00 2.71
471 472 5.682990 GCAATGAAAGTTGGATATGGCATGT 60.683 40.000 10.98 2.44 0.00 3.21
472 473 4.748102 GCAATGAAAGTTGGATATGGCATG 59.252 41.667 10.98 0.00 0.00 4.06
473 474 4.406326 TGCAATGAAAGTTGGATATGGCAT 59.594 37.500 4.88 4.88 0.00 4.40
474 475 3.768215 TGCAATGAAAGTTGGATATGGCA 59.232 39.130 0.00 0.00 0.00 4.92
475 476 4.389890 TGCAATGAAAGTTGGATATGGC 57.610 40.909 0.00 0.00 0.00 4.40
476 477 9.550406 AATTAATGCAATGAAAGTTGGATATGG 57.450 29.630 0.00 0.00 38.91 2.74
480 481 9.807649 GTCTAATTAATGCAATGAAAGTTGGAT 57.192 29.630 0.00 0.00 41.15 3.41
481 482 8.250332 GGTCTAATTAATGCAATGAAAGTTGGA 58.750 33.333 0.00 0.00 33.89 3.53
482 483 7.492344 GGGTCTAATTAATGCAATGAAAGTTGG 59.508 37.037 0.00 0.00 0.00 3.77
483 484 8.253113 AGGGTCTAATTAATGCAATGAAAGTTG 58.747 33.333 0.00 0.00 0.00 3.16
484 485 8.366359 AGGGTCTAATTAATGCAATGAAAGTT 57.634 30.769 0.00 0.00 0.00 2.66
485 486 7.961326 AGGGTCTAATTAATGCAATGAAAGT 57.039 32.000 0.00 0.00 0.00 2.66
486 487 8.902806 TGTAGGGTCTAATTAATGCAATGAAAG 58.097 33.333 0.00 0.00 0.00 2.62
487 488 8.815565 TGTAGGGTCTAATTAATGCAATGAAA 57.184 30.769 0.00 0.00 0.00 2.69
488 489 8.995027 ATGTAGGGTCTAATTAATGCAATGAA 57.005 30.769 0.00 0.00 0.00 2.57
489 490 9.502091 GTATGTAGGGTCTAATTAATGCAATGA 57.498 33.333 0.00 0.00 0.00 2.57
490 491 8.730680 GGTATGTAGGGTCTAATTAATGCAATG 58.269 37.037 0.00 0.00 0.00 2.82
491 492 8.669571 AGGTATGTAGGGTCTAATTAATGCAAT 58.330 33.333 0.00 0.00 0.00 3.56
492 493 8.041143 AGGTATGTAGGGTCTAATTAATGCAA 57.959 34.615 0.00 0.00 0.00 4.08
493 494 7.626999 AGGTATGTAGGGTCTAATTAATGCA 57.373 36.000 0.00 0.00 0.00 3.96
494 495 9.433153 GTAAGGTATGTAGGGTCTAATTAATGC 57.567 37.037 0.00 0.00 0.00 3.56
497 498 9.719433 ACAGTAAGGTATGTAGGGTCTAATTAA 57.281 33.333 0.00 0.00 0.00 1.40
499 500 9.719433 TTACAGTAAGGTATGTAGGGTCTAATT 57.281 33.333 0.00 0.00 33.66 1.40
500 501 9.719433 TTTACAGTAAGGTATGTAGGGTCTAAT 57.281 33.333 0.00 0.00 33.66 1.73
501 502 9.719433 ATTTACAGTAAGGTATGTAGGGTCTAA 57.281 33.333 0.00 0.00 33.66 2.10
502 503 9.359653 GATTTACAGTAAGGTATGTAGGGTCTA 57.640 37.037 0.00 0.00 33.66 2.59
503 504 7.014038 CGATTTACAGTAAGGTATGTAGGGTCT 59.986 40.741 0.00 0.00 33.66 3.85
504 505 7.013655 TCGATTTACAGTAAGGTATGTAGGGTC 59.986 40.741 0.00 0.00 33.66 4.46
505 506 6.835488 TCGATTTACAGTAAGGTATGTAGGGT 59.165 38.462 0.00 0.00 33.66 4.34
506 507 7.014038 ACTCGATTTACAGTAAGGTATGTAGGG 59.986 40.741 0.00 0.00 33.66 3.53
507 508 7.861372 CACTCGATTTACAGTAAGGTATGTAGG 59.139 40.741 0.00 0.00 33.66 3.18
508 509 8.404000 ACACTCGATTTACAGTAAGGTATGTAG 58.596 37.037 0.00 0.00 33.66 2.74
509 510 8.284945 ACACTCGATTTACAGTAAGGTATGTA 57.715 34.615 0.00 0.00 0.00 2.29
510 511 7.166691 ACACTCGATTTACAGTAAGGTATGT 57.833 36.000 0.00 0.00 0.00 2.29
511 512 8.475331 AAACACTCGATTTACAGTAAGGTATG 57.525 34.615 0.00 0.00 0.00 2.39
513 514 9.979578 TTTAAACACTCGATTTACAGTAAGGTA 57.020 29.630 0.00 0.00 0.00 3.08
514 515 8.891671 TTTAAACACTCGATTTACAGTAAGGT 57.108 30.769 0.00 0.00 0.00 3.50
565 566 5.163834 GGTAAATCGTCATACCGAGCAAAAA 60.164 40.000 0.00 0.00 40.68 1.94
566 567 4.330620 GGTAAATCGTCATACCGAGCAAAA 59.669 41.667 0.00 0.00 40.68 2.44
567 568 3.866910 GGTAAATCGTCATACCGAGCAAA 59.133 43.478 0.00 0.00 40.68 3.68
568 569 3.450578 GGTAAATCGTCATACCGAGCAA 58.549 45.455 0.00 0.00 40.68 3.91
569 570 3.088194 GGTAAATCGTCATACCGAGCA 57.912 47.619 0.00 0.00 40.68 4.26
574 575 2.288640 CCCCTCGGTAAATCGTCATACC 60.289 54.545 0.00 0.00 38.55 2.73
575 576 2.865276 GCCCCTCGGTAAATCGTCATAC 60.865 54.545 0.00 0.00 0.00 2.39
576 577 1.342174 GCCCCTCGGTAAATCGTCATA 59.658 52.381 0.00 0.00 0.00 2.15
577 578 0.106149 GCCCCTCGGTAAATCGTCAT 59.894 55.000 0.00 0.00 0.00 3.06
578 579 1.259142 TGCCCCTCGGTAAATCGTCA 61.259 55.000 0.00 0.00 0.00 4.35
579 580 0.808847 GTGCCCCTCGGTAAATCGTC 60.809 60.000 0.00 0.00 0.00 4.20
580 581 1.219935 GTGCCCCTCGGTAAATCGT 59.780 57.895 0.00 0.00 0.00 3.73
581 582 1.881252 CGTGCCCCTCGGTAAATCG 60.881 63.158 0.00 0.00 0.00 3.34
582 583 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
583 584 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
584 585 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
585 586 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
586 587 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
587 588 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
589 590 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
590 591 1.219935 ACGTATTTCCGTGCCCCTC 59.780 57.895 0.00 0.00 40.08 4.30
591 592 3.395630 ACGTATTTCCGTGCCCCT 58.604 55.556 0.00 0.00 40.08 4.79
597 598 3.264104 CATGGTTACCACGTATTTCCGT 58.736 45.455 6.10 0.00 42.87 4.69
598 599 2.610374 CCATGGTTACCACGTATTTCCG 59.390 50.000 6.10 0.00 35.80 4.30
599 600 2.946990 CCCATGGTTACCACGTATTTCC 59.053 50.000 6.10 0.00 35.80 3.13
600 601 3.876341 TCCCATGGTTACCACGTATTTC 58.124 45.455 6.10 0.00 35.80 2.17
601 602 4.304048 TTCCCATGGTTACCACGTATTT 57.696 40.909 6.10 0.00 35.80 1.40
602 603 4.304048 TTTCCCATGGTTACCACGTATT 57.696 40.909 6.10 0.00 35.80 1.89
603 604 4.165372 AGATTTCCCATGGTTACCACGTAT 59.835 41.667 6.10 0.00 35.80 3.06
604 605 3.520317 AGATTTCCCATGGTTACCACGTA 59.480 43.478 6.10 0.00 35.80 3.57
605 606 2.307686 AGATTTCCCATGGTTACCACGT 59.692 45.455 6.10 0.00 35.80 4.49
606 607 2.999331 AGATTTCCCATGGTTACCACG 58.001 47.619 6.10 0.00 35.80 4.94
607 608 4.340617 TCAAGATTTCCCATGGTTACCAC 58.659 43.478 6.10 0.00 35.80 4.16
608 609 4.666412 TCAAGATTTCCCATGGTTACCA 57.334 40.909 6.53 6.53 38.19 3.25
609 610 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
610 611 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
611 612 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
612 613 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
613 614 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
614 615 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
615 616 6.529125 CAGTCGAAATTTCAAGATTTCCCATG 59.471 38.462 17.99 0.00 41.02 3.66
616 617 6.350445 CCAGTCGAAATTTCAAGATTTCCCAT 60.350 38.462 17.99 0.00 41.02 4.00
617 618 5.048083 CCAGTCGAAATTTCAAGATTTCCCA 60.048 40.000 17.99 0.00 41.02 4.37
618 619 5.048013 ACCAGTCGAAATTTCAAGATTTCCC 60.048 40.000 17.99 0.00 41.02 3.97
619 620 6.013842 ACCAGTCGAAATTTCAAGATTTCC 57.986 37.500 17.99 0.00 41.02 3.13
620 621 7.537649 GGTTACCAGTCGAAATTTCAAGATTTC 59.462 37.037 17.99 0.00 40.80 2.17
621 622 7.013846 TGGTTACCAGTCGAAATTTCAAGATTT 59.986 33.333 17.99 0.99 32.16 2.17
622 623 6.488683 TGGTTACCAGTCGAAATTTCAAGATT 59.511 34.615 17.99 2.59 0.00 2.40
623 624 6.001460 TGGTTACCAGTCGAAATTTCAAGAT 58.999 36.000 17.99 1.22 0.00 2.40
624 625 5.369833 TGGTTACCAGTCGAAATTTCAAGA 58.630 37.500 17.99 5.43 0.00 3.02
625 626 5.682943 TGGTTACCAGTCGAAATTTCAAG 57.317 39.130 17.99 3.07 0.00 3.02
626 627 6.452494 TTTGGTTACCAGTCGAAATTTCAA 57.548 33.333 17.99 0.00 33.81 2.69
627 628 6.267070 GTTTTGGTTACCAGTCGAAATTTCA 58.733 36.000 17.99 2.95 33.81 2.69
628 629 5.688621 GGTTTTGGTTACCAGTCGAAATTTC 59.311 40.000 3.65 8.20 33.81 2.17
629 630 5.361571 AGGTTTTGGTTACCAGTCGAAATTT 59.638 36.000 3.65 0.00 38.16 1.82
630 631 4.891168 AGGTTTTGGTTACCAGTCGAAATT 59.109 37.500 3.65 0.00 38.16 1.82
631 632 4.466827 AGGTTTTGGTTACCAGTCGAAAT 58.533 39.130 3.65 0.00 38.16 2.17
632 633 3.888583 AGGTTTTGGTTACCAGTCGAAA 58.111 40.909 3.65 0.00 38.16 3.46
633 634 3.564053 AGGTTTTGGTTACCAGTCGAA 57.436 42.857 3.65 0.00 38.16 3.71
634 635 3.207778 CAAGGTTTTGGTTACCAGTCGA 58.792 45.455 3.65 0.00 38.16 4.20
635 636 3.619233 CAAGGTTTTGGTTACCAGTCG 57.381 47.619 3.65 0.00 38.16 4.18
646 647 4.261614 GCTGGAAGTAAGACCAAGGTTTTG 60.262 45.833 5.36 0.00 35.67 2.44
647 648 3.889538 GCTGGAAGTAAGACCAAGGTTTT 59.110 43.478 0.48 0.48 35.67 2.43
648 649 3.138468 AGCTGGAAGTAAGACCAAGGTTT 59.862 43.478 0.00 0.00 35.67 3.27
649 650 2.711547 AGCTGGAAGTAAGACCAAGGTT 59.288 45.455 0.00 0.00 35.67 3.50
650 651 2.039084 CAGCTGGAAGTAAGACCAAGGT 59.961 50.000 5.57 0.00 35.67 3.50
651 652 2.616510 CCAGCTGGAAGTAAGACCAAGG 60.617 54.545 29.88 0.00 37.39 3.61
652 653 2.704572 CCAGCTGGAAGTAAGACCAAG 58.295 52.381 29.88 0.00 37.39 3.61
653 654 1.271379 GCCAGCTGGAAGTAAGACCAA 60.271 52.381 37.21 0.00 37.39 3.67
654 655 0.324943 GCCAGCTGGAAGTAAGACCA 59.675 55.000 37.21 0.00 37.39 4.02
655 656 0.741221 CGCCAGCTGGAAGTAAGACC 60.741 60.000 37.21 13.87 37.39 3.85
685 686 2.031120 TGCAACTGGGGAGTTTTTGAG 58.969 47.619 0.00 0.00 0.00 3.02
727 738 6.603201 TGATCAAGGAGTAATTAGCTTTTGGG 59.397 38.462 0.00 0.00 0.00 4.12
743 2455 0.820226 CGTCTCTGGCTGATCAAGGA 59.180 55.000 0.00 0.00 0.00 3.36
744 2456 0.809241 GCGTCTCTGGCTGATCAAGG 60.809 60.000 0.00 0.00 0.00 3.61
786 2499 3.945179 GTACTCCACGTACGAATACCAG 58.055 50.000 24.41 10.53 39.15 4.00
917 2636 3.120546 CGTACCGTACTCGAGACAGAAAA 60.121 47.826 21.68 0.00 39.71 2.29
921 2640 0.026027 GCGTACCGTACTCGAGACAG 59.974 60.000 21.68 9.03 39.71 3.51
922 2641 1.686566 CGCGTACCGTACTCGAGACA 61.687 60.000 21.68 3.07 39.05 3.41
923 2642 1.012889 CGCGTACCGTACTCGAGAC 60.013 63.158 21.68 11.87 39.05 3.36
924 2643 2.802667 GCGCGTACCGTACTCGAGA 61.803 63.158 21.68 0.00 39.05 4.04
925 2644 2.350537 GCGCGTACCGTACTCGAG 60.351 66.667 21.93 11.84 39.05 4.04
926 2645 2.802667 GAGCGCGTACCGTACTCGA 61.803 63.158 21.93 0.00 39.05 4.04
927 2646 1.482621 TAGAGCGCGTACCGTACTCG 61.483 60.000 15.14 15.14 39.66 4.18
928 2647 0.231790 CTAGAGCGCGTACCGTACTC 59.768 60.000 8.43 3.51 39.71 2.59
930 2649 1.368612 GCTAGAGCGCGTACCGTAC 60.369 63.158 8.43 0.00 39.71 3.67
969 2690 4.627801 TTTGGCACGGCTACGGCA 62.628 61.111 0.00 0.00 46.48 5.69
976 2697 1.664151 GTATACTCTGTTTGGCACGGC 59.336 52.381 0.00 0.00 0.00 5.68
978 2699 2.852413 CGAGTATACTCTGTTTGGCACG 59.148 50.000 26.32 9.54 40.75 5.34
979 2700 4.106029 TCGAGTATACTCTGTTTGGCAC 57.894 45.455 26.32 1.69 40.75 5.01
989 2710 4.380023 GCCTCATGTCCATCGAGTATACTC 60.380 50.000 21.00 21.00 39.55 2.59
993 2714 1.620819 GGCCTCATGTCCATCGAGTAT 59.379 52.381 0.00 0.00 0.00 2.12
1002 2723 1.153549 GAGTGACGGCCTCATGTCC 60.154 63.158 0.00 0.00 34.18 4.02
1017 2738 1.043673 GCGGGAGGAGTACATGGAGT 61.044 60.000 0.00 0.00 0.00 3.85
1020 2741 1.742768 GAGCGGGAGGAGTACATGG 59.257 63.158 0.00 0.00 0.00 3.66
1022 2743 0.851469 TAGGAGCGGGAGGAGTACAT 59.149 55.000 0.00 0.00 0.00 2.29
1200 2921 4.717313 GGGGACAGGGGCGTCAAC 62.717 72.222 0.00 0.00 37.66 3.18
1401 3134 1.453524 CAGCTGACGACTTTCACGAAG 59.546 52.381 8.42 0.00 41.32 3.79
1597 3330 1.490693 CCGATGCATGTACGCAGTCC 61.491 60.000 2.46 0.00 46.99 3.85
1598 3331 0.806102 ACCGATGCATGTACGCAGTC 60.806 55.000 2.46 0.00 46.99 3.51
1599 3332 1.083806 CACCGATGCATGTACGCAGT 61.084 55.000 2.46 0.00 46.99 4.40
1600 3333 1.637934 CACCGATGCATGTACGCAG 59.362 57.895 2.46 0.00 46.99 5.18
1644 3377 0.661483 GAAAGAAACAGGCTGCACGC 60.661 55.000 15.89 1.56 38.13 5.34
1645 3378 0.384725 CGAAAGAAACAGGCTGCACG 60.385 55.000 15.89 6.31 0.00 5.34
1651 3385 2.726241 GCAAATCACGAAAGAAACAGGC 59.274 45.455 0.00 0.00 0.00 4.85
1681 3415 8.641498 ATCAGTTACACTCAAATTCTCCAAAT 57.359 30.769 0.00 0.00 0.00 2.32
1719 3453 4.593206 ACTGAGGACCAGATAGAAACAACA 59.407 41.667 0.00 0.00 45.78 3.33
1726 3460 5.777449 TGGATAAACTGAGGACCAGATAGA 58.223 41.667 0.00 0.00 45.78 1.98
1727 3461 6.678568 ATGGATAAACTGAGGACCAGATAG 57.321 41.667 0.00 0.00 45.78 2.08
1729 3463 6.146760 AGTATGGATAAACTGAGGACCAGAT 58.853 40.000 0.00 0.00 45.78 2.90
1733 3467 5.871396 TGAGTATGGATAAACTGAGGACC 57.129 43.478 0.00 0.00 0.00 4.46
1761 3495 3.151554 GCATGATAGATGGTGCAATGGA 58.848 45.455 0.00 0.00 37.52 3.41
1764 3498 3.825014 GGAAGCATGATAGATGGTGCAAT 59.175 43.478 0.00 0.00 39.94 3.56
1806 3540 5.529060 AGAAGCAGAAGAGTTGTAAAACAGG 59.471 40.000 0.00 0.00 0.00 4.00
1836 3573 5.458041 CCACAAGGTGACAAAATGAGAAT 57.542 39.130 0.00 0.00 35.23 2.40
1860 3598 3.515602 ACTCAAAAGAGAAGCACCCAT 57.484 42.857 0.00 0.00 0.00 4.00
2241 3993 2.753029 GCAGGTGAGGAAGTGGCT 59.247 61.111 0.00 0.00 0.00 4.75
2332 4084 4.471078 TGTAGAGGCTAGTGGATATGGT 57.529 45.455 0.00 0.00 0.00 3.55
2337 4089 5.650266 CGATTCTATGTAGAGGCTAGTGGAT 59.350 44.000 0.00 0.00 33.21 3.41
2351 4103 3.967326 TGTTCCTGGGATCGATTCTATGT 59.033 43.478 3.13 0.00 0.00 2.29
2360 4112 2.093447 AGCTTTAGTGTTCCTGGGATCG 60.093 50.000 0.00 0.00 0.00 3.69
2368 4120 4.816925 AGTTCTGTGAAGCTTTAGTGTTCC 59.183 41.667 0.00 0.00 0.00 3.62
2387 4139 3.959943 ACACGTTTTGGCATGTTAGTTC 58.040 40.909 0.00 0.00 0.00 3.01
2417 4169 5.937187 TGTGTTGTGATATCAATTGTTCCG 58.063 37.500 7.07 0.00 0.00 4.30
2441 4193 2.762472 CGCAGATCGTGTTTTGTCATC 58.238 47.619 0.00 0.00 0.00 2.92
2453 4205 4.899239 GGCCTCCCACGCAGATCG 62.899 72.222 0.00 0.00 45.38 3.69
2454 4206 2.932130 GAAGGCCTCCCACGCAGATC 62.932 65.000 5.23 0.00 0.00 2.75
2460 4212 0.107017 AATCATGAAGGCCTCCCACG 60.107 55.000 5.23 0.00 0.00 4.94
2477 4229 3.108376 GAGGAACCACTCCCTCACTAAT 58.892 50.000 0.00 0.00 46.81 1.73
2479 4231 2.233305 GAGGAACCACTCCCTCACTA 57.767 55.000 0.00 0.00 46.81 2.74
2480 4232 3.074788 GAGGAACCACTCCCTCACT 57.925 57.895 0.00 0.00 46.81 3.41
2544 4296 2.844348 ACCCAAATCGGAATAGGACTGT 59.156 45.455 0.00 0.00 36.56 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.