Multiple sequence alignment - TraesCS4B01G288100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G288100 chr4B 100.000 4889 0 0 1 4889 573272300 573277188 0.000000e+00 9029.0
1 TraesCS4B01G288100 chr4B 91.842 380 29 2 1 378 131347558 131347937 3.350000e-146 529.0
2 TraesCS4B01G288100 chr4D 95.063 3747 118 27 522 4231 459024150 459027866 0.000000e+00 5832.0
3 TraesCS4B01G288100 chr4D 88.303 607 67 3 4281 4884 202359467 202360072 0.000000e+00 725.0
4 TraesCS4B01G288100 chr4D 91.864 381 27 4 1 379 173604318 173604696 3.350000e-146 529.0
5 TraesCS4B01G288100 chr4D 91.049 391 31 4 1 388 64211475 64211086 4.340000e-145 525.0
6 TraesCS4B01G288100 chr4A 92.466 1752 85 21 2458 4183 9931005 9929275 0.000000e+00 2460.0
7 TraesCS4B01G288100 chr4A 89.906 1813 87 38 635 2407 9932774 9931018 0.000000e+00 2246.0
8 TraesCS4B01G288100 chr4A 91.837 98 8 0 522 619 9932980 9932883 2.370000e-28 137.0
9 TraesCS4B01G288100 chr7D 90.576 573 51 2 4320 4889 401142720 401143292 0.000000e+00 756.0
10 TraesCS4B01G288100 chr5D 89.070 613 62 4 4281 4889 559097823 559098434 0.000000e+00 756.0
11 TraesCS4B01G288100 chr5D 91.601 381 29 3 1 379 380011959 380012338 1.560000e-144 523.0
12 TraesCS4B01G288100 chr7B 88.889 612 63 4 4281 4889 228264794 228264185 0.000000e+00 749.0
13 TraesCS4B01G288100 chr3D 89.779 587 49 5 4313 4889 391240846 391241431 0.000000e+00 741.0
14 TraesCS4B01G288100 chr3A 88.562 612 63 6 4281 4889 574258311 574258918 0.000000e+00 736.0
15 TraesCS4B01G288100 chr3A 97.059 34 1 0 4229 4262 741090901 741090934 1.900000e-04 58.4
16 TraesCS4B01G288100 chr2D 88.455 615 62 6 4281 4887 465971077 465970464 0.000000e+00 734.0
17 TraesCS4B01G288100 chr6A 88.380 611 65 6 4282 4889 77515162 77515769 0.000000e+00 730.0
18 TraesCS4B01G288100 chr6D 88.235 612 68 3 4281 4889 139318368 139317758 0.000000e+00 728.0
19 TraesCS4B01G288100 chr6B 92.388 381 28 1 1 380 229534167 229533787 4.300000e-150 542.0
20 TraesCS4B01G288100 chr6B 90.746 389 35 1 1 388 607014448 607014060 7.250000e-143 518.0
21 TraesCS4B01G288100 chr1B 92.368 380 28 1 1 379 417465944 417466323 1.550000e-149 540.0
22 TraesCS4B01G288100 chr5B 91.864 381 29 2 1 380 192378665 192379044 9.320000e-147 531.0
23 TraesCS4B01G288100 chr2B 90.793 391 33 2 1 388 608917276 608916886 2.020000e-143 520.0
24 TraesCS4B01G288100 chr7A 91.837 49 3 1 4228 4275 428331207 428331255 3.160000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G288100 chr4B 573272300 573277188 4888 False 9029.000000 9029 100.000 1 4889 1 chr4B.!!$F2 4888
1 TraesCS4B01G288100 chr4D 459024150 459027866 3716 False 5832.000000 5832 95.063 522 4231 1 chr4D.!!$F3 3709
2 TraesCS4B01G288100 chr4D 202359467 202360072 605 False 725.000000 725 88.303 4281 4884 1 chr4D.!!$F2 603
3 TraesCS4B01G288100 chr4A 9929275 9932980 3705 True 1614.333333 2460 91.403 522 4183 3 chr4A.!!$R1 3661
4 TraesCS4B01G288100 chr7D 401142720 401143292 572 False 756.000000 756 90.576 4320 4889 1 chr7D.!!$F1 569
5 TraesCS4B01G288100 chr5D 559097823 559098434 611 False 756.000000 756 89.070 4281 4889 1 chr5D.!!$F2 608
6 TraesCS4B01G288100 chr7B 228264185 228264794 609 True 749.000000 749 88.889 4281 4889 1 chr7B.!!$R1 608
7 TraesCS4B01G288100 chr3D 391240846 391241431 585 False 741.000000 741 89.779 4313 4889 1 chr3D.!!$F1 576
8 TraesCS4B01G288100 chr3A 574258311 574258918 607 False 736.000000 736 88.562 4281 4889 1 chr3A.!!$F1 608
9 TraesCS4B01G288100 chr2D 465970464 465971077 613 True 734.000000 734 88.455 4281 4887 1 chr2D.!!$R1 606
10 TraesCS4B01G288100 chr6A 77515162 77515769 607 False 730.000000 730 88.380 4282 4889 1 chr6A.!!$F1 607
11 TraesCS4B01G288100 chr6D 139317758 139318368 610 True 728.000000 728 88.235 4281 4889 1 chr6D.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.035317 ACTGACAGATTTGAGGCGCA 59.965 50.0 10.83 0.0 0.00 6.09 F
503 504 0.179034 ATTCCGAGCAAGGGATGAGC 60.179 55.0 0.00 0.0 32.58 4.26 F
787 884 0.320421 CGGACCATTTCCACGTCACT 60.320 55.0 0.00 0.0 46.29 3.41 F
1701 1826 0.806868 ATTGGCAGCTCAACATCGTG 59.193 50.0 0.00 0.0 0.00 4.35 F
3252 3402 0.896940 CTGCTGGTGGATTGGCTGTT 60.897 55.0 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1810 0.955428 TTCCACGATGTTGAGCTGCC 60.955 55.000 0.00 0.0 0.00 4.85 R
1767 1892 1.301716 GCCACATGACACCGTGACT 60.302 57.895 5.28 0.0 35.02 3.41 R
2309 2434 5.868257 TCTGTGTTAATTTTAGCATCGCTG 58.132 37.500 0.00 0.0 40.10 5.18 R
3305 3455 1.483004 TCAGACGTTCCACCAAGTGAA 59.517 47.619 0.00 0.0 35.23 3.18 R
4256 4428 0.704076 TGGCACTATTTCAAGCCCCT 59.296 50.000 0.00 0.0 46.45 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.856607 CTCCGCCGTCGCCTTCTC 62.857 72.222 0.00 0.00 0.00 2.87
20 21 4.856607 CGCCGTCGCCTTCTCCTC 62.857 72.222 0.00 0.00 0.00 3.71
21 22 3.453679 GCCGTCGCCTTCTCCTCT 61.454 66.667 0.00 0.00 0.00 3.69
22 23 2.802106 CCGTCGCCTTCTCCTCTC 59.198 66.667 0.00 0.00 0.00 3.20
23 24 2.046864 CCGTCGCCTTCTCCTCTCA 61.047 63.158 0.00 0.00 0.00 3.27
24 25 1.137825 CGTCGCCTTCTCCTCTCAC 59.862 63.158 0.00 0.00 0.00 3.51
25 26 1.513622 GTCGCCTTCTCCTCTCACC 59.486 63.158 0.00 0.00 0.00 4.02
26 27 0.968393 GTCGCCTTCTCCTCTCACCT 60.968 60.000 0.00 0.00 0.00 4.00
27 28 0.251832 TCGCCTTCTCCTCTCACCTT 60.252 55.000 0.00 0.00 0.00 3.50
28 29 0.174617 CGCCTTCTCCTCTCACCTTC 59.825 60.000 0.00 0.00 0.00 3.46
29 30 1.567357 GCCTTCTCCTCTCACCTTCT 58.433 55.000 0.00 0.00 0.00 2.85
30 31 1.480545 GCCTTCTCCTCTCACCTTCTC 59.519 57.143 0.00 0.00 0.00 2.87
31 32 2.888069 GCCTTCTCCTCTCACCTTCTCT 60.888 54.545 0.00 0.00 0.00 3.10
32 33 3.440127 CCTTCTCCTCTCACCTTCTCTT 58.560 50.000 0.00 0.00 0.00 2.85
33 34 3.447229 CCTTCTCCTCTCACCTTCTCTTC 59.553 52.174 0.00 0.00 0.00 2.87
34 35 3.094484 TCTCCTCTCACCTTCTCTTCC 57.906 52.381 0.00 0.00 0.00 3.46
35 36 2.380249 TCTCCTCTCACCTTCTCTTCCA 59.620 50.000 0.00 0.00 0.00 3.53
36 37 3.169099 CTCCTCTCACCTTCTCTTCCAA 58.831 50.000 0.00 0.00 0.00 3.53
37 38 3.774216 CTCCTCTCACCTTCTCTTCCAAT 59.226 47.826 0.00 0.00 0.00 3.16
38 39 3.772025 TCCTCTCACCTTCTCTTCCAATC 59.228 47.826 0.00 0.00 0.00 2.67
39 40 3.430098 CCTCTCACCTTCTCTTCCAATCG 60.430 52.174 0.00 0.00 0.00 3.34
40 41 3.431415 TCTCACCTTCTCTTCCAATCGA 58.569 45.455 0.00 0.00 0.00 3.59
41 42 4.026744 TCTCACCTTCTCTTCCAATCGAT 58.973 43.478 0.00 0.00 0.00 3.59
42 43 4.467795 TCTCACCTTCTCTTCCAATCGATT 59.532 41.667 4.39 4.39 0.00 3.34
43 44 4.507710 TCACCTTCTCTTCCAATCGATTG 58.492 43.478 27.66 27.66 37.52 2.67
44 45 4.222810 TCACCTTCTCTTCCAATCGATTGA 59.777 41.667 34.21 19.66 40.14 2.57
45 46 4.937620 CACCTTCTCTTCCAATCGATTGAA 59.062 41.667 34.21 24.19 40.14 2.69
46 47 4.938226 ACCTTCTCTTCCAATCGATTGAAC 59.062 41.667 34.21 0.00 40.14 3.18
47 48 5.181748 CCTTCTCTTCCAATCGATTGAACT 58.818 41.667 34.21 0.00 40.14 3.01
48 49 5.064452 CCTTCTCTTCCAATCGATTGAACTG 59.936 44.000 34.21 19.82 40.14 3.16
49 50 5.152623 TCTCTTCCAATCGATTGAACTGT 57.847 39.130 34.21 0.00 40.14 3.55
50 51 4.931601 TCTCTTCCAATCGATTGAACTGTG 59.068 41.667 34.21 18.83 40.14 3.66
51 52 4.002982 TCTTCCAATCGATTGAACTGTGG 58.997 43.478 34.21 19.62 40.14 4.17
52 53 2.710377 TCCAATCGATTGAACTGTGGG 58.290 47.619 34.21 17.96 40.14 4.61
53 54 1.745087 CCAATCGATTGAACTGTGGGG 59.255 52.381 34.21 14.22 40.14 4.96
54 55 2.436417 CAATCGATTGAACTGTGGGGT 58.564 47.619 30.12 0.00 40.14 4.95
55 56 2.113860 ATCGATTGAACTGTGGGGTG 57.886 50.000 0.00 0.00 0.00 4.61
56 57 0.036164 TCGATTGAACTGTGGGGTGG 59.964 55.000 0.00 0.00 0.00 4.61
57 58 0.960364 CGATTGAACTGTGGGGTGGG 60.960 60.000 0.00 0.00 0.00 4.61
58 59 0.112412 GATTGAACTGTGGGGTGGGT 59.888 55.000 0.00 0.00 0.00 4.51
59 60 0.560688 ATTGAACTGTGGGGTGGGTT 59.439 50.000 0.00 0.00 0.00 4.11
60 61 0.396417 TTGAACTGTGGGGTGGGTTG 60.396 55.000 0.00 0.00 0.00 3.77
61 62 1.229076 GAACTGTGGGGTGGGTTGT 59.771 57.895 0.00 0.00 0.00 3.32
62 63 1.076339 AACTGTGGGGTGGGTTGTG 60.076 57.895 0.00 0.00 0.00 3.33
63 64 2.912025 CTGTGGGGTGGGTTGTGC 60.912 66.667 0.00 0.00 0.00 4.57
64 65 4.885270 TGTGGGGTGGGTTGTGCG 62.885 66.667 0.00 0.00 0.00 5.34
65 66 4.572571 GTGGGGTGGGTTGTGCGA 62.573 66.667 0.00 0.00 0.00 5.10
66 67 4.263572 TGGGGTGGGTTGTGCGAG 62.264 66.667 0.00 0.00 0.00 5.03
67 68 4.265056 GGGGTGGGTTGTGCGAGT 62.265 66.667 0.00 0.00 0.00 4.18
68 69 2.745037 GGGTGGGTTGTGCGAGTA 59.255 61.111 0.00 0.00 0.00 2.59
69 70 1.071814 GGGTGGGTTGTGCGAGTAA 59.928 57.895 0.00 0.00 0.00 2.24
70 71 0.322187 GGGTGGGTTGTGCGAGTAAT 60.322 55.000 0.00 0.00 0.00 1.89
71 72 0.802494 GGTGGGTTGTGCGAGTAATG 59.198 55.000 0.00 0.00 0.00 1.90
72 73 1.609580 GGTGGGTTGTGCGAGTAATGA 60.610 52.381 0.00 0.00 0.00 2.57
73 74 2.147958 GTGGGTTGTGCGAGTAATGAA 58.852 47.619 0.00 0.00 0.00 2.57
74 75 2.159627 GTGGGTTGTGCGAGTAATGAAG 59.840 50.000 0.00 0.00 0.00 3.02
75 76 2.224426 TGGGTTGTGCGAGTAATGAAGT 60.224 45.455 0.00 0.00 0.00 3.01
76 77 2.159627 GGGTTGTGCGAGTAATGAAGTG 59.840 50.000 0.00 0.00 0.00 3.16
77 78 2.159627 GGTTGTGCGAGTAATGAAGTGG 59.840 50.000 0.00 0.00 0.00 4.00
78 79 2.093306 TGTGCGAGTAATGAAGTGGG 57.907 50.000 0.00 0.00 0.00 4.61
79 80 1.338674 TGTGCGAGTAATGAAGTGGGG 60.339 52.381 0.00 0.00 0.00 4.96
80 81 1.066430 GTGCGAGTAATGAAGTGGGGA 60.066 52.381 0.00 0.00 0.00 4.81
81 82 1.207089 TGCGAGTAATGAAGTGGGGAG 59.793 52.381 0.00 0.00 0.00 4.30
82 83 1.207329 GCGAGTAATGAAGTGGGGAGT 59.793 52.381 0.00 0.00 0.00 3.85
83 84 2.429610 GCGAGTAATGAAGTGGGGAGTA 59.570 50.000 0.00 0.00 0.00 2.59
84 85 3.118884 GCGAGTAATGAAGTGGGGAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
85 86 4.622220 GCGAGTAATGAAGTGGGGAGTAAA 60.622 45.833 0.00 0.00 0.00 2.01
86 87 5.671493 CGAGTAATGAAGTGGGGAGTAAAT 58.329 41.667 0.00 0.00 0.00 1.40
87 88 5.523916 CGAGTAATGAAGTGGGGAGTAAATG 59.476 44.000 0.00 0.00 0.00 2.32
88 89 5.755849 AGTAATGAAGTGGGGAGTAAATGG 58.244 41.667 0.00 0.00 0.00 3.16
89 90 4.946160 AATGAAGTGGGGAGTAAATGGA 57.054 40.909 0.00 0.00 0.00 3.41
90 91 4.946160 ATGAAGTGGGGAGTAAATGGAA 57.054 40.909 0.00 0.00 0.00 3.53
91 92 4.028993 TGAAGTGGGGAGTAAATGGAAC 57.971 45.455 0.00 0.00 0.00 3.62
92 93 3.245122 TGAAGTGGGGAGTAAATGGAACC 60.245 47.826 0.00 0.00 0.00 3.62
93 94 1.280998 AGTGGGGAGTAAATGGAACCG 59.719 52.381 0.00 0.00 0.00 4.44
94 95 1.003928 GTGGGGAGTAAATGGAACCGT 59.996 52.381 0.00 0.00 0.00 4.83
95 96 1.003812 TGGGGAGTAAATGGAACCGTG 59.996 52.381 0.00 0.00 0.00 4.94
96 97 1.279846 GGGGAGTAAATGGAACCGTGA 59.720 52.381 0.00 0.00 0.00 4.35
97 98 2.629051 GGGAGTAAATGGAACCGTGAG 58.371 52.381 0.00 0.00 0.00 3.51
126 127 3.335534 GAAGTGCGCGACGTGGTT 61.336 61.111 12.10 0.00 0.00 3.67
127 128 3.558282 GAAGTGCGCGACGTGGTTG 62.558 63.158 12.10 0.00 0.00 3.77
128 129 4.578898 AGTGCGCGACGTGGTTGA 62.579 61.111 12.10 0.00 0.00 3.18
129 130 4.349871 GTGCGCGACGTGGTTGAC 62.350 66.667 12.10 0.00 0.00 3.18
172 173 4.404654 CGGCCGCAAAGCAGTTCC 62.405 66.667 14.67 0.00 0.00 3.62
173 174 3.294493 GGCCGCAAAGCAGTTCCA 61.294 61.111 0.00 0.00 0.00 3.53
174 175 2.050077 GCCGCAAAGCAGTTCCAC 60.050 61.111 0.00 0.00 0.00 4.02
175 176 2.555547 GCCGCAAAGCAGTTCCACT 61.556 57.895 0.00 0.00 0.00 4.00
183 184 3.357079 CAGTTCCACTGCACGCCC 61.357 66.667 0.00 0.00 39.62 6.13
184 185 4.643387 AGTTCCACTGCACGCCCC 62.643 66.667 0.00 0.00 0.00 5.80
199 200 4.636435 CCCCGAGTGGCAACCGTT 62.636 66.667 8.59 0.00 0.00 4.44
200 201 2.344500 CCCGAGTGGCAACCGTTA 59.656 61.111 8.59 0.00 0.00 3.18
201 202 1.301874 CCCGAGTGGCAACCGTTAA 60.302 57.895 8.59 0.00 0.00 2.01
202 203 1.571215 CCCGAGTGGCAACCGTTAAC 61.571 60.000 8.59 0.00 0.00 2.01
203 204 1.571215 CCGAGTGGCAACCGTTAACC 61.571 60.000 0.00 0.00 0.00 2.85
204 205 1.864176 GAGTGGCAACCGTTAACCG 59.136 57.895 0.00 0.00 0.00 4.44
205 206 2.178892 GAGTGGCAACCGTTAACCGC 62.179 60.000 0.00 7.63 34.38 5.68
206 207 3.347405 TGGCAACCGTTAACCGCG 61.347 61.111 0.00 0.00 34.38 6.46
212 213 3.762247 CCGTTAACCGCGGGGAGA 61.762 66.667 31.76 9.55 44.98 3.71
213 214 2.507769 CGTTAACCGCGGGGAGAC 60.508 66.667 31.76 19.99 36.97 3.36
214 215 2.658422 GTTAACCGCGGGGAGACA 59.342 61.111 31.76 3.62 36.97 3.41
215 216 1.004679 GTTAACCGCGGGGAGACAA 60.005 57.895 31.76 10.51 36.97 3.18
216 217 1.004679 TTAACCGCGGGGAGACAAC 60.005 57.895 31.76 0.00 36.97 3.32
217 218 2.453379 TTAACCGCGGGGAGACAACC 62.453 60.000 31.76 0.00 36.97 3.77
224 225 4.309950 GGGAGACAACCGGCGTGT 62.310 66.667 11.01 11.01 0.00 4.49
225 226 3.041940 GGAGACAACCGGCGTGTG 61.042 66.667 15.68 6.69 0.00 3.82
226 227 3.041940 GAGACAACCGGCGTGTGG 61.042 66.667 15.68 4.70 0.00 4.17
227 228 4.619227 AGACAACCGGCGTGTGGG 62.619 66.667 15.68 3.88 0.00 4.61
235 236 2.746277 GGCGTGTGGGCGAATTCT 60.746 61.111 3.52 0.00 0.00 2.40
236 237 2.332654 GGCGTGTGGGCGAATTCTT 61.333 57.895 3.52 0.00 0.00 2.52
237 238 1.579429 GCGTGTGGGCGAATTCTTT 59.421 52.632 3.52 0.00 0.00 2.52
238 239 0.454452 GCGTGTGGGCGAATTCTTTC 60.454 55.000 3.52 0.00 0.00 2.62
239 240 0.871722 CGTGTGGGCGAATTCTTTCA 59.128 50.000 3.52 0.00 0.00 2.69
240 241 1.399727 CGTGTGGGCGAATTCTTTCAC 60.400 52.381 3.52 8.96 0.00 3.18
241 242 1.606668 GTGTGGGCGAATTCTTTCACA 59.393 47.619 15.65 15.65 33.48 3.58
242 243 1.606668 TGTGGGCGAATTCTTTCACAC 59.393 47.619 15.65 14.86 34.14 3.82
243 244 1.606668 GTGGGCGAATTCTTTCACACA 59.393 47.619 15.30 1.50 33.92 3.72
244 245 1.606668 TGGGCGAATTCTTTCACACAC 59.393 47.619 3.52 0.00 0.00 3.82
245 246 1.068541 GGGCGAATTCTTTCACACACC 60.069 52.381 3.52 0.00 0.00 4.16
246 247 1.606668 GGCGAATTCTTTCACACACCA 59.393 47.619 3.52 0.00 0.00 4.17
247 248 2.604614 GGCGAATTCTTTCACACACCAC 60.605 50.000 3.52 0.00 0.00 4.16
248 249 2.032799 GCGAATTCTTTCACACACCACA 59.967 45.455 3.52 0.00 0.00 4.17
249 250 3.617669 CGAATTCTTTCACACACCACAC 58.382 45.455 3.52 0.00 0.00 3.82
250 251 3.064682 CGAATTCTTTCACACACCACACA 59.935 43.478 3.52 0.00 0.00 3.72
251 252 4.351192 GAATTCTTTCACACACCACACAC 58.649 43.478 0.00 0.00 0.00 3.82
252 253 1.364721 TCTTTCACACACCACACACG 58.635 50.000 0.00 0.00 0.00 4.49
253 254 0.248054 CTTTCACACACCACACACGC 60.248 55.000 0.00 0.00 0.00 5.34
254 255 1.972027 TTTCACACACCACACACGCG 61.972 55.000 3.53 3.53 0.00 6.01
255 256 2.837371 TTCACACACCACACACGCGA 62.837 55.000 15.93 0.00 0.00 5.87
256 257 2.888534 ACACACCACACACGCGAC 60.889 61.111 15.93 0.00 0.00 5.19
257 258 2.584970 CACACCACACACGCGACT 60.585 61.111 15.93 0.00 0.00 4.18
258 259 2.171079 CACACCACACACGCGACTT 61.171 57.895 15.93 0.00 0.00 3.01
259 260 2.171079 ACACCACACACGCGACTTG 61.171 57.895 15.93 9.11 0.00 3.16
260 261 2.171079 CACCACACACGCGACTTGT 61.171 57.895 15.93 9.84 0.00 3.16
261 262 1.881252 ACCACACACGCGACTTGTC 60.881 57.895 15.93 0.00 0.00 3.18
262 263 2.594962 CCACACACGCGACTTGTCC 61.595 63.158 15.93 0.00 0.00 4.02
263 264 1.591594 CACACACGCGACTTGTCCT 60.592 57.895 15.93 0.00 0.00 3.85
264 265 0.318360 CACACACGCGACTTGTCCTA 60.318 55.000 15.93 0.00 0.00 2.94
265 266 0.318445 ACACACGCGACTTGTCCTAC 60.318 55.000 15.93 0.00 0.00 3.18
266 267 1.081641 ACACGCGACTTGTCCTACG 60.082 57.895 15.93 0.00 0.00 3.51
267 268 1.081641 CACGCGACTTGTCCTACGT 60.082 57.895 15.93 0.00 0.00 3.57
268 269 1.081641 ACGCGACTTGTCCTACGTG 60.082 57.895 15.93 0.00 41.07 4.49
269 270 1.208358 CGCGACTTGTCCTACGTGA 59.792 57.895 0.00 0.00 38.28 4.35
270 271 1.063951 CGCGACTTGTCCTACGTGAC 61.064 60.000 0.00 0.00 38.28 3.67
271 272 0.039798 GCGACTTGTCCTACGTGACA 60.040 55.000 4.71 4.71 43.26 3.58
272 273 1.682982 CGACTTGTCCTACGTGACAC 58.317 55.000 8.13 0.00 44.55 3.67
273 274 1.002142 CGACTTGTCCTACGTGACACA 60.002 52.381 8.13 0.07 44.55 3.72
274 275 2.391879 GACTTGTCCTACGTGACACAC 58.608 52.381 8.13 0.00 44.55 3.82
275 276 1.752498 ACTTGTCCTACGTGACACACA 59.248 47.619 8.13 0.00 44.55 3.72
276 277 2.166870 ACTTGTCCTACGTGACACACAA 59.833 45.455 8.13 7.25 44.55 3.33
277 278 2.963548 TGTCCTACGTGACACACAAA 57.036 45.000 6.37 0.00 40.22 2.83
278 279 3.248495 TGTCCTACGTGACACACAAAA 57.752 42.857 6.37 0.00 40.22 2.44
279 280 3.799366 TGTCCTACGTGACACACAAAAT 58.201 40.909 6.37 0.00 40.22 1.82
280 281 3.805422 TGTCCTACGTGACACACAAAATC 59.195 43.478 6.37 0.00 40.22 2.17
281 282 3.805422 GTCCTACGTGACACACAAAATCA 59.195 43.478 6.37 0.00 35.29 2.57
282 283 4.055360 TCCTACGTGACACACAAAATCAG 58.945 43.478 6.37 0.00 33.40 2.90
283 284 2.755836 ACGTGACACACAAAATCAGC 57.244 45.000 6.37 0.00 33.40 4.26
284 285 2.288666 ACGTGACACACAAAATCAGCT 58.711 42.857 6.37 0.00 33.40 4.24
285 286 3.462982 ACGTGACACACAAAATCAGCTA 58.537 40.909 6.37 0.00 33.40 3.32
286 287 3.874543 ACGTGACACACAAAATCAGCTAA 59.125 39.130 6.37 0.00 33.40 3.09
287 288 4.334203 ACGTGACACACAAAATCAGCTAAA 59.666 37.500 6.37 0.00 33.40 1.85
288 289 5.163703 ACGTGACACACAAAATCAGCTAAAA 60.164 36.000 6.37 0.00 33.40 1.52
289 290 5.171337 CGTGACACACAAAATCAGCTAAAAC 59.829 40.000 6.37 0.00 33.40 2.43
290 291 5.171337 GTGACACACAAAATCAGCTAAAACG 59.829 40.000 0.00 0.00 34.08 3.60
291 292 5.163703 TGACACACAAAATCAGCTAAAACGT 60.164 36.000 0.00 0.00 0.00 3.99
292 293 5.034152 ACACACAAAATCAGCTAAAACGTG 58.966 37.500 0.00 0.00 0.00 4.49
293 294 4.041723 ACACAAAATCAGCTAAAACGTGC 58.958 39.130 0.00 0.00 0.00 5.34
294 295 3.425193 CACAAAATCAGCTAAAACGTGCC 59.575 43.478 0.00 0.00 0.00 5.01
295 296 3.067461 ACAAAATCAGCTAAAACGTGCCA 59.933 39.130 0.00 0.00 0.00 4.92
296 297 4.047822 CAAAATCAGCTAAAACGTGCCAA 58.952 39.130 0.00 0.00 0.00 4.52
297 298 3.559238 AATCAGCTAAAACGTGCCAAG 57.441 42.857 0.00 0.00 0.00 3.61
298 299 2.248280 TCAGCTAAAACGTGCCAAGA 57.752 45.000 0.00 0.00 0.00 3.02
299 300 2.778299 TCAGCTAAAACGTGCCAAGAT 58.222 42.857 0.00 0.00 0.00 2.40
300 301 3.146066 TCAGCTAAAACGTGCCAAGATT 58.854 40.909 0.00 0.00 0.00 2.40
301 302 3.188460 TCAGCTAAAACGTGCCAAGATTC 59.812 43.478 0.00 0.00 0.00 2.52
302 303 3.058293 CAGCTAAAACGTGCCAAGATTCA 60.058 43.478 0.00 0.00 0.00 2.57
303 304 3.758554 AGCTAAAACGTGCCAAGATTCAT 59.241 39.130 0.00 0.00 0.00 2.57
304 305 3.853671 GCTAAAACGTGCCAAGATTCATG 59.146 43.478 0.00 0.00 0.00 3.07
305 306 2.352503 AAACGTGCCAAGATTCATGC 57.647 45.000 0.00 0.00 0.00 4.06
306 307 1.246649 AACGTGCCAAGATTCATGCA 58.753 45.000 0.00 0.00 0.00 3.96
307 308 0.806868 ACGTGCCAAGATTCATGCAG 59.193 50.000 0.00 0.00 33.80 4.41
308 309 1.089112 CGTGCCAAGATTCATGCAGA 58.911 50.000 0.00 0.00 33.80 4.26
309 310 1.469703 CGTGCCAAGATTCATGCAGAA 59.530 47.619 0.00 0.00 41.28 3.02
310 311 2.730090 CGTGCCAAGATTCATGCAGAAC 60.730 50.000 0.00 0.00 39.49 3.01
311 312 1.820519 TGCCAAGATTCATGCAGAACC 59.179 47.619 0.00 0.00 39.49 3.62
312 313 2.097825 GCCAAGATTCATGCAGAACCT 58.902 47.619 0.00 0.00 39.49 3.50
313 314 3.282021 GCCAAGATTCATGCAGAACCTA 58.718 45.455 0.00 0.00 39.49 3.08
314 315 3.887716 GCCAAGATTCATGCAGAACCTAT 59.112 43.478 0.00 0.00 39.49 2.57
315 316 4.340381 GCCAAGATTCATGCAGAACCTATT 59.660 41.667 0.00 0.00 39.49 1.73
316 317 5.735354 GCCAAGATTCATGCAGAACCTATTG 60.735 44.000 0.00 0.00 39.49 1.90
317 318 5.591472 CCAAGATTCATGCAGAACCTATTGA 59.409 40.000 0.00 0.00 39.49 2.57
318 319 6.095860 CCAAGATTCATGCAGAACCTATTGAA 59.904 38.462 0.00 0.00 39.49 2.69
319 320 6.690194 AGATTCATGCAGAACCTATTGAAC 57.310 37.500 0.00 0.00 39.49 3.18
320 321 4.944962 TTCATGCAGAACCTATTGAACG 57.055 40.909 0.00 0.00 0.00 3.95
321 322 3.270027 TCATGCAGAACCTATTGAACGG 58.730 45.455 0.00 0.00 0.00 4.44
322 323 1.448985 TGCAGAACCTATTGAACGGC 58.551 50.000 0.00 0.00 0.00 5.68
323 324 0.373716 GCAGAACCTATTGAACGGCG 59.626 55.000 4.80 4.80 0.00 6.46
324 325 2.004583 CAGAACCTATTGAACGGCGA 57.995 50.000 16.62 0.00 0.00 5.54
325 326 2.550978 CAGAACCTATTGAACGGCGAT 58.449 47.619 16.62 0.00 0.00 4.58
326 327 2.285220 CAGAACCTATTGAACGGCGATG 59.715 50.000 16.62 0.00 0.00 3.84
327 328 1.597663 GAACCTATTGAACGGCGATGG 59.402 52.381 16.62 0.53 0.00 3.51
328 329 0.828022 ACCTATTGAACGGCGATGGA 59.172 50.000 16.62 0.00 0.00 3.41
329 330 1.208535 ACCTATTGAACGGCGATGGAA 59.791 47.619 16.62 0.35 0.00 3.53
330 331 1.867233 CCTATTGAACGGCGATGGAAG 59.133 52.381 16.62 3.36 0.00 3.46
331 332 1.261619 CTATTGAACGGCGATGGAAGC 59.738 52.381 16.62 0.00 0.00 3.86
339 340 3.966215 CGATGGAAGCGTGTGGTT 58.034 55.556 0.00 0.00 43.21 3.67
340 341 1.497278 CGATGGAAGCGTGTGGTTG 59.503 57.895 0.00 0.00 43.21 3.77
341 342 0.948623 CGATGGAAGCGTGTGGTTGA 60.949 55.000 0.00 0.00 43.21 3.18
342 343 0.798776 GATGGAAGCGTGTGGTTGAG 59.201 55.000 0.00 0.00 35.57 3.02
343 344 0.108585 ATGGAAGCGTGTGGTTGAGT 59.891 50.000 0.00 0.00 35.57 3.41
344 345 0.107410 TGGAAGCGTGTGGTTGAGTT 60.107 50.000 0.00 0.00 35.57 3.01
345 346 0.307760 GGAAGCGTGTGGTTGAGTTG 59.692 55.000 0.00 0.00 35.57 3.16
346 347 0.307760 GAAGCGTGTGGTTGAGTTGG 59.692 55.000 0.00 0.00 35.57 3.77
347 348 1.724582 AAGCGTGTGGTTGAGTTGGC 61.725 55.000 0.00 0.00 33.79 4.52
348 349 2.186826 GCGTGTGGTTGAGTTGGCT 61.187 57.895 0.00 0.00 0.00 4.75
349 350 0.882927 GCGTGTGGTTGAGTTGGCTA 60.883 55.000 0.00 0.00 0.00 3.93
350 351 1.588674 CGTGTGGTTGAGTTGGCTAA 58.411 50.000 0.00 0.00 0.00 3.09
351 352 1.263217 CGTGTGGTTGAGTTGGCTAAC 59.737 52.381 4.51 4.51 37.06 2.34
352 353 1.263217 GTGTGGTTGAGTTGGCTAACG 59.737 52.381 7.35 0.00 41.71 3.18
353 354 0.237498 GTGGTTGAGTTGGCTAACGC 59.763 55.000 9.73 9.73 41.71 4.84
363 364 3.981308 GCTAACGCCCACACATGT 58.019 55.556 0.00 0.00 0.00 3.21
364 365 1.501741 GCTAACGCCCACACATGTG 59.498 57.895 24.25 24.25 45.23 3.21
373 374 2.927004 CACACATGTGGGCGTTAGT 58.073 52.632 28.64 3.06 42.10 2.24
374 375 0.516877 CACACATGTGGGCGTTAGTG 59.483 55.000 28.64 12.05 42.10 2.74
375 376 0.107831 ACACATGTGGGCGTTAGTGT 59.892 50.000 28.64 1.52 35.58 3.55
376 377 1.234821 CACATGTGGGCGTTAGTGTT 58.765 50.000 18.51 0.00 0.00 3.32
377 378 1.606668 CACATGTGGGCGTTAGTGTTT 59.393 47.619 18.51 0.00 0.00 2.83
378 379 2.034053 CACATGTGGGCGTTAGTGTTTT 59.966 45.455 18.51 0.00 0.00 2.43
379 380 2.292292 ACATGTGGGCGTTAGTGTTTTC 59.708 45.455 0.00 0.00 0.00 2.29
380 381 2.039818 TGTGGGCGTTAGTGTTTTCA 57.960 45.000 0.00 0.00 0.00 2.69
381 382 2.577700 TGTGGGCGTTAGTGTTTTCAT 58.422 42.857 0.00 0.00 0.00 2.57
382 383 2.952978 TGTGGGCGTTAGTGTTTTCATT 59.047 40.909 0.00 0.00 0.00 2.57
383 384 3.003897 TGTGGGCGTTAGTGTTTTCATTC 59.996 43.478 0.00 0.00 0.00 2.67
384 385 3.252458 GTGGGCGTTAGTGTTTTCATTCT 59.748 43.478 0.00 0.00 0.00 2.40
385 386 3.886505 TGGGCGTTAGTGTTTTCATTCTT 59.113 39.130 0.00 0.00 0.00 2.52
386 387 4.339814 TGGGCGTTAGTGTTTTCATTCTTT 59.660 37.500 0.00 0.00 0.00 2.52
387 388 5.163499 TGGGCGTTAGTGTTTTCATTCTTTT 60.163 36.000 0.00 0.00 0.00 2.27
388 389 6.039493 TGGGCGTTAGTGTTTTCATTCTTTTA 59.961 34.615 0.00 0.00 0.00 1.52
389 390 6.919115 GGGCGTTAGTGTTTTCATTCTTTTAA 59.081 34.615 0.00 0.00 0.00 1.52
390 391 7.096353 GGGCGTTAGTGTTTTCATTCTTTTAAC 60.096 37.037 0.00 0.00 0.00 2.01
391 392 7.096353 GGCGTTAGTGTTTTCATTCTTTTAACC 60.096 37.037 0.00 0.00 0.00 2.85
392 393 7.356962 GCGTTAGTGTTTTCATTCTTTTAACCG 60.357 37.037 0.00 0.00 0.00 4.44
393 394 7.112426 CGTTAGTGTTTTCATTCTTTTAACCGG 59.888 37.037 0.00 0.00 0.00 5.28
394 395 6.459670 AGTGTTTTCATTCTTTTAACCGGT 57.540 33.333 0.00 0.00 0.00 5.28
395 396 6.869695 AGTGTTTTCATTCTTTTAACCGGTT 58.130 32.000 25.64 25.64 0.00 4.44
396 397 7.998580 AGTGTTTTCATTCTTTTAACCGGTTA 58.001 30.769 23.17 23.17 0.00 2.85
397 398 8.132995 AGTGTTTTCATTCTTTTAACCGGTTAG 58.867 33.333 25.25 17.10 0.00 2.34
398 399 6.919115 TGTTTTCATTCTTTTAACCGGTTAGC 59.081 34.615 25.25 6.22 0.00 3.09
399 400 6.887626 TTTCATTCTTTTAACCGGTTAGCT 57.112 33.333 25.25 4.28 0.00 3.32
400 401 7.982761 TTTCATTCTTTTAACCGGTTAGCTA 57.017 32.000 25.25 10.03 0.00 3.32
401 402 8.570068 TTTCATTCTTTTAACCGGTTAGCTAT 57.430 30.769 25.25 13.47 0.00 2.97
402 403 7.781548 TCATTCTTTTAACCGGTTAGCTATC 57.218 36.000 25.25 0.00 0.00 2.08
403 404 6.477688 TCATTCTTTTAACCGGTTAGCTATCG 59.522 38.462 25.25 13.44 0.00 2.92
407 408 3.456317 CCGGTTAGCTATCGGGCT 58.544 61.111 21.47 0.00 45.29 5.19
408 409 1.006102 CCGGTTAGCTATCGGGCTG 60.006 63.158 21.47 5.35 43.01 4.85
409 410 1.740285 CGGTTAGCTATCGGGCTGT 59.260 57.895 0.00 0.00 43.01 4.40
410 411 0.318784 CGGTTAGCTATCGGGCTGTC 60.319 60.000 0.00 2.76 43.01 3.51
411 412 1.041437 GGTTAGCTATCGGGCTGTCT 58.959 55.000 0.00 0.00 43.01 3.41
412 413 1.000052 GGTTAGCTATCGGGCTGTCTC 60.000 57.143 0.00 0.00 43.01 3.36
413 414 1.957877 GTTAGCTATCGGGCTGTCTCT 59.042 52.381 0.00 0.00 43.01 3.10
414 415 1.898902 TAGCTATCGGGCTGTCTCTC 58.101 55.000 8.30 0.00 43.01 3.20
415 416 0.825840 AGCTATCGGGCTGTCTCTCC 60.826 60.000 0.00 0.00 41.43 3.71
416 417 1.109920 GCTATCGGGCTGTCTCTCCA 61.110 60.000 0.00 0.00 0.00 3.86
417 418 0.958091 CTATCGGGCTGTCTCTCCAG 59.042 60.000 0.00 0.00 35.49 3.86
418 419 0.551396 TATCGGGCTGTCTCTCCAGA 59.449 55.000 0.00 0.00 34.23 3.86
429 430 3.835779 GTCTCTCCAGACGTTTAAGACC 58.164 50.000 0.00 0.00 39.91 3.85
430 431 2.486982 TCTCTCCAGACGTTTAAGACCG 59.513 50.000 0.00 0.00 0.00 4.79
431 432 2.486982 CTCTCCAGACGTTTAAGACCGA 59.513 50.000 0.00 0.00 0.00 4.69
432 433 3.087031 TCTCCAGACGTTTAAGACCGAT 58.913 45.455 0.00 0.00 0.00 4.18
433 434 3.508793 TCTCCAGACGTTTAAGACCGATT 59.491 43.478 0.00 0.00 0.00 3.34
434 435 4.021719 TCTCCAGACGTTTAAGACCGATTT 60.022 41.667 0.00 0.00 0.00 2.17
435 436 3.991773 TCCAGACGTTTAAGACCGATTTG 59.008 43.478 0.00 0.00 0.00 2.32
436 437 3.991773 CCAGACGTTTAAGACCGATTTGA 59.008 43.478 0.00 0.00 0.00 2.69
437 438 4.091509 CCAGACGTTTAAGACCGATTTGAG 59.908 45.833 0.00 0.00 0.00 3.02
438 439 4.921515 CAGACGTTTAAGACCGATTTGAGA 59.078 41.667 0.00 0.00 0.00 3.27
439 440 4.922103 AGACGTTTAAGACCGATTTGAGAC 59.078 41.667 0.00 0.00 0.00 3.36
440 441 4.624015 ACGTTTAAGACCGATTTGAGACA 58.376 39.130 0.00 0.00 0.00 3.41
441 442 4.446719 ACGTTTAAGACCGATTTGAGACAC 59.553 41.667 0.00 0.00 0.00 3.67
442 443 4.684703 CGTTTAAGACCGATTTGAGACACT 59.315 41.667 0.00 0.00 0.00 3.55
443 444 5.388475 CGTTTAAGACCGATTTGAGACACTG 60.388 44.000 0.00 0.00 0.00 3.66
444 445 5.462530 TTAAGACCGATTTGAGACACTGA 57.537 39.130 0.00 0.00 0.00 3.41
445 446 3.305398 AGACCGATTTGAGACACTGAC 57.695 47.619 0.00 0.00 0.00 3.51
446 447 2.628178 AGACCGATTTGAGACACTGACA 59.372 45.455 0.00 0.00 0.00 3.58
447 448 2.989840 GACCGATTTGAGACACTGACAG 59.010 50.000 0.00 0.00 0.00 3.51
448 449 2.628178 ACCGATTTGAGACACTGACAGA 59.372 45.455 10.08 0.00 0.00 3.41
449 450 3.259374 ACCGATTTGAGACACTGACAGAT 59.741 43.478 10.08 0.00 0.00 2.90
450 451 4.248859 CCGATTTGAGACACTGACAGATT 58.751 43.478 10.08 0.00 0.00 2.40
451 452 4.692625 CCGATTTGAGACACTGACAGATTT 59.307 41.667 10.08 0.00 0.00 2.17
452 453 5.390251 CCGATTTGAGACACTGACAGATTTG 60.390 44.000 10.08 0.00 0.00 2.32
453 454 5.406477 CGATTTGAGACACTGACAGATTTGA 59.594 40.000 10.08 0.00 0.00 2.69
454 455 6.400834 CGATTTGAGACACTGACAGATTTGAG 60.401 42.308 10.08 0.00 0.00 3.02
455 456 4.263018 TGAGACACTGACAGATTTGAGG 57.737 45.455 10.08 0.00 0.00 3.86
456 457 2.999355 GAGACACTGACAGATTTGAGGC 59.001 50.000 10.08 0.00 0.00 4.70
457 458 1.728971 GACACTGACAGATTTGAGGCG 59.271 52.381 10.08 0.00 0.00 5.52
458 459 0.445436 CACTGACAGATTTGAGGCGC 59.555 55.000 10.08 0.00 0.00 6.53
459 460 0.035317 ACTGACAGATTTGAGGCGCA 59.965 50.000 10.83 0.00 0.00 6.09
460 461 1.159285 CTGACAGATTTGAGGCGCAA 58.841 50.000 10.83 0.00 33.88 4.85
461 462 1.129998 CTGACAGATTTGAGGCGCAAG 59.870 52.381 10.83 0.00 37.87 4.01
462 463 1.270785 TGACAGATTTGAGGCGCAAGA 60.271 47.619 10.83 0.00 37.87 3.02
463 464 2.012673 GACAGATTTGAGGCGCAAGAT 58.987 47.619 10.83 1.46 37.87 2.40
464 465 1.741706 ACAGATTTGAGGCGCAAGATG 59.258 47.619 10.83 7.10 37.87 2.90
465 466 0.737219 AGATTTGAGGCGCAAGATGC 59.263 50.000 10.83 0.00 40.69 3.91
466 467 0.737219 GATTTGAGGCGCAAGATGCT 59.263 50.000 10.83 0.00 42.25 3.79
467 468 0.737219 ATTTGAGGCGCAAGATGCTC 59.263 50.000 10.83 5.88 42.25 4.26
468 469 0.321919 TTTGAGGCGCAAGATGCTCT 60.322 50.000 10.83 0.00 42.25 4.09
469 470 0.321919 TTGAGGCGCAAGATGCTCTT 60.322 50.000 10.83 0.00 42.25 2.85
470 471 0.536724 TGAGGCGCAAGATGCTCTTA 59.463 50.000 10.83 0.00 42.25 2.10
471 472 0.933796 GAGGCGCAAGATGCTCTTAC 59.066 55.000 10.83 0.00 42.25 2.34
472 473 0.250234 AGGCGCAAGATGCTCTTACA 59.750 50.000 10.83 0.00 42.25 2.41
473 474 1.134280 AGGCGCAAGATGCTCTTACAT 60.134 47.619 10.83 0.00 42.25 2.29
474 475 1.262683 GGCGCAAGATGCTCTTACATC 59.737 52.381 10.83 0.00 45.62 3.06
481 482 2.671596 GATGCTCTTACATCTCTCGGC 58.328 52.381 0.00 0.00 42.63 5.54
482 483 0.747255 TGCTCTTACATCTCTCGGCC 59.253 55.000 0.00 0.00 0.00 6.13
483 484 0.747255 GCTCTTACATCTCTCGGCCA 59.253 55.000 2.24 0.00 0.00 5.36
484 485 1.137086 GCTCTTACATCTCTCGGCCAA 59.863 52.381 2.24 0.00 0.00 4.52
485 486 2.224161 GCTCTTACATCTCTCGGCCAAT 60.224 50.000 2.24 0.00 0.00 3.16
486 487 3.742640 GCTCTTACATCTCTCGGCCAATT 60.743 47.826 2.24 0.00 0.00 2.32
487 488 4.054671 CTCTTACATCTCTCGGCCAATTC 58.945 47.826 2.24 0.00 0.00 2.17
488 489 2.910688 TACATCTCTCGGCCAATTCC 57.089 50.000 2.24 0.00 0.00 3.01
496 497 3.200522 GGCCAATTCCGAGCAAGG 58.799 61.111 0.00 0.00 0.00 3.61
497 498 2.418083 GGCCAATTCCGAGCAAGGG 61.418 63.158 0.00 0.00 0.00 3.95
498 499 1.378514 GCCAATTCCGAGCAAGGGA 60.379 57.895 0.00 0.00 0.00 4.20
499 500 0.753111 GCCAATTCCGAGCAAGGGAT 60.753 55.000 0.00 0.00 32.58 3.85
500 501 1.027357 CCAATTCCGAGCAAGGGATG 58.973 55.000 0.00 0.00 32.58 3.51
501 502 1.408683 CCAATTCCGAGCAAGGGATGA 60.409 52.381 0.00 0.00 32.58 2.92
502 503 1.945394 CAATTCCGAGCAAGGGATGAG 59.055 52.381 0.00 0.00 32.58 2.90
503 504 0.179034 ATTCCGAGCAAGGGATGAGC 60.179 55.000 0.00 0.00 32.58 4.26
504 505 1.267574 TTCCGAGCAAGGGATGAGCT 61.268 55.000 0.00 0.00 42.17 4.09
505 506 1.523258 CCGAGCAAGGGATGAGCTG 60.523 63.158 0.00 0.00 39.02 4.24
506 507 1.519246 CGAGCAAGGGATGAGCTGA 59.481 57.895 0.00 0.00 39.02 4.26
507 508 0.530211 CGAGCAAGGGATGAGCTGAG 60.530 60.000 0.00 0.00 39.02 3.35
508 509 0.814812 GAGCAAGGGATGAGCTGAGC 60.815 60.000 0.00 0.00 39.02 4.26
509 510 1.224039 GCAAGGGATGAGCTGAGCT 59.776 57.895 6.69 6.69 43.88 4.09
510 511 1.096386 GCAAGGGATGAGCTGAGCTG 61.096 60.000 13.71 0.00 39.88 4.24
511 512 1.096386 CAAGGGATGAGCTGAGCTGC 61.096 60.000 13.71 4.15 39.88 5.25
512 513 2.203181 GGGATGAGCTGAGCTGCC 60.203 66.667 13.71 10.47 39.88 4.85
513 514 2.744243 GGGATGAGCTGAGCTGCCT 61.744 63.158 13.71 0.00 39.88 4.75
514 515 1.227615 GGATGAGCTGAGCTGCCTC 60.228 63.158 13.71 5.27 39.88 4.70
515 516 1.227615 GATGAGCTGAGCTGCCTCC 60.228 63.158 13.71 0.00 39.88 4.30
516 517 2.663423 GATGAGCTGAGCTGCCTCCC 62.663 65.000 13.71 0.00 39.88 4.30
517 518 3.082701 GAGCTGAGCTGCCTCCCT 61.083 66.667 13.71 0.00 39.88 4.20
518 519 3.082701 AGCTGAGCTGCCTCCCTC 61.083 66.667 5.97 0.00 37.57 4.30
519 520 4.527583 GCTGAGCTGCCTCCCTCG 62.528 72.222 0.00 0.00 37.29 4.63
520 521 3.847602 CTGAGCTGCCTCCCTCGG 61.848 72.222 0.00 0.00 37.29 4.63
551 552 1.022735 GACAGGAGATAGCGACGGAA 58.977 55.000 0.00 0.00 0.00 4.30
582 583 4.767255 CTCCACCTCAGGCGTGCC 62.767 72.222 1.67 1.67 0.00 5.01
659 756 1.266175 CGTATCTACCCGCTCACGAAT 59.734 52.381 0.00 0.00 43.93 3.34
663 760 1.672854 CTACCCGCTCACGAATCCCA 61.673 60.000 0.00 0.00 43.93 4.37
677 774 2.024176 ATCCCAACGACGATTCCTTG 57.976 50.000 0.00 0.00 0.00 3.61
679 776 0.796312 CCCAACGACGATTCCTTGTG 59.204 55.000 0.00 0.00 0.00 3.33
717 814 4.436998 CACGAGGCCCCGTCAGAC 62.437 72.222 10.33 0.00 41.29 3.51
731 828 3.842923 AGACAGCCAGATCCCGCG 61.843 66.667 0.00 0.00 0.00 6.46
787 884 0.320421 CGGACCATTTCCACGTCACT 60.320 55.000 0.00 0.00 46.29 3.41
862 960 1.372683 CACTCCACTCCACCACCAG 59.627 63.158 0.00 0.00 0.00 4.00
903 1002 2.043664 ACTCCACTCTCCTTCTCATCCA 59.956 50.000 0.00 0.00 0.00 3.41
904 1003 3.307506 CTCCACTCTCCTTCTCATCCAT 58.692 50.000 0.00 0.00 0.00 3.41
905 1004 3.303938 TCCACTCTCCTTCTCATCCATC 58.696 50.000 0.00 0.00 0.00 3.51
906 1005 3.052262 TCCACTCTCCTTCTCATCCATCT 60.052 47.826 0.00 0.00 0.00 2.90
959 1058 2.317609 CCCTCGCTGTTCGGTTGTG 61.318 63.158 0.00 0.00 39.05 3.33
995 1096 1.705873 ACCCCTAGCTAACTGATCCG 58.294 55.000 0.00 0.00 0.00 4.18
996 1097 1.217183 ACCCCTAGCTAACTGATCCGA 59.783 52.381 0.00 0.00 0.00 4.55
1422 1538 8.958119 TGTAAGATTAGGTTCGATATTTTGCT 57.042 30.769 0.00 0.00 0.00 3.91
1578 1700 1.376609 CCAAAGGCCCCGATCGAAAG 61.377 60.000 18.66 5.63 0.00 2.62
1685 1810 8.217131 TCTTGATTCCATTGTGATCTGTATTG 57.783 34.615 0.00 0.00 0.00 1.90
1701 1826 0.806868 ATTGGCAGCTCAACATCGTG 59.193 50.000 0.00 0.00 0.00 4.35
1767 1892 3.289128 CGATTGCTTCGGAGGCATA 57.711 52.632 15.85 7.42 44.28 3.14
2207 2332 1.777941 AGTACCCGATTCCTCAGGTC 58.222 55.000 0.00 0.00 34.00 3.85
2346 2484 8.801715 AATTAACACAGAAGCACAAAAGTATG 57.198 30.769 0.00 0.00 0.00 2.39
2540 2680 9.673454 CTGTAGTTGTTTAAATTGGTTCTTACC 57.327 33.333 0.00 0.00 45.26 2.85
2718 2858 5.060506 TCGCAGAAACTTTCCAAGTATGAA 58.939 37.500 0.00 0.00 41.91 2.57
3252 3402 0.896940 CTGCTGGTGGATTGGCTGTT 60.897 55.000 0.00 0.00 0.00 3.16
3360 3510 5.284660 GCAGAAGCATGAAAGTAAAATGTCG 59.715 40.000 0.00 0.00 41.58 4.35
3361 3511 6.602179 CAGAAGCATGAAAGTAAAATGTCGA 58.398 36.000 0.00 0.00 0.00 4.20
3362 3512 6.740002 CAGAAGCATGAAAGTAAAATGTCGAG 59.260 38.462 0.00 0.00 0.00 4.04
3363 3513 6.428159 AGAAGCATGAAAGTAAAATGTCGAGT 59.572 34.615 0.00 0.00 0.00 4.18
3364 3514 6.170675 AGCATGAAAGTAAAATGTCGAGTC 57.829 37.500 0.00 0.00 0.00 3.36
3417 3567 3.067461 TCGGTCAACTGTTTGATTTTGGG 59.933 43.478 0.00 0.00 43.72 4.12
3427 3577 6.067263 TGTTTGATTTTGGGTTCGAGTTAG 57.933 37.500 0.00 0.00 0.00 2.34
3429 3579 5.682943 TTGATTTTGGGTTCGAGTTAGTG 57.317 39.130 0.00 0.00 0.00 2.74
3567 3717 2.125350 CCAAGGCTGAGACCGCTC 60.125 66.667 0.00 0.00 41.67 5.03
3713 3868 2.534019 CGGTCTGCACAGCAACGTT 61.534 57.895 0.00 0.00 38.41 3.99
3722 3877 2.543653 GCACAGCAACGTTTTCAGGATT 60.544 45.455 0.00 0.00 0.00 3.01
3743 3898 0.396435 AACCACCGATGTGCTTCTCA 59.604 50.000 0.00 0.00 41.35 3.27
3769 3924 1.134995 CGATGCAGGTCAGTAGCTCAA 60.135 52.381 0.00 0.00 0.00 3.02
3771 3926 0.321671 TGCAGGTCAGTAGCTCAACC 59.678 55.000 0.00 0.00 0.00 3.77
3790 3945 1.123077 CATCTCCACAAGATCCCCGA 58.877 55.000 0.00 0.00 43.13 5.14
3791 3946 1.123928 ATCTCCACAAGATCCCCGAC 58.876 55.000 0.00 0.00 40.99 4.79
3792 3947 1.141881 CTCCACAAGATCCCCGACG 59.858 63.158 0.00 0.00 0.00 5.12
3793 3948 1.304630 TCCACAAGATCCCCGACGA 60.305 57.895 0.00 0.00 0.00 4.20
3795 3950 0.036765 CCACAAGATCCCCGACGAAA 60.037 55.000 0.00 0.00 0.00 3.46
3812 3968 2.604914 CGAAATCTGCATTGCTCGTAGT 59.395 45.455 10.49 0.00 0.00 2.73
3814 3970 1.945387 ATCTGCATTGCTCGTAGTGG 58.055 50.000 10.49 0.00 0.00 4.00
3815 3971 0.608130 TCTGCATTGCTCGTAGTGGT 59.392 50.000 10.49 0.00 0.00 4.16
3816 3972 1.822371 TCTGCATTGCTCGTAGTGGTA 59.178 47.619 10.49 0.00 0.00 3.25
3817 3973 2.159240 TCTGCATTGCTCGTAGTGGTAG 60.159 50.000 10.49 0.00 0.00 3.18
3818 3974 1.822371 TGCATTGCTCGTAGTGGTAGA 59.178 47.619 10.49 0.00 0.00 2.59
3828 3984 2.611292 CGTAGTGGTAGAGACTAACCGG 59.389 54.545 0.00 0.00 38.70 5.28
3829 3985 3.679917 CGTAGTGGTAGAGACTAACCGGA 60.680 52.174 9.46 0.00 38.70 5.14
3833 3989 2.296792 GGTAGAGACTAACCGGACTCC 58.703 57.143 9.46 0.00 0.00 3.85
3834 3990 2.092484 GGTAGAGACTAACCGGACTCCT 60.092 54.545 9.46 0.00 0.00 3.69
3836 3992 1.634459 AGAGACTAACCGGACTCCTGA 59.366 52.381 9.46 0.00 0.00 3.86
3838 3994 2.619646 GAGACTAACCGGACTCCTGATC 59.380 54.545 9.46 0.00 0.00 2.92
3983 4140 3.453559 GCTGGTAGCATGGTACGTT 57.546 52.632 24.55 0.00 41.89 3.99
4016 4173 3.636043 CGTCACCGCGTGTTTGCT 61.636 61.111 4.92 0.00 34.79 3.91
4035 4192 0.917939 TCGCAACGCATGTATACGTG 59.082 50.000 18.99 18.99 42.68 4.49
4043 4214 0.179094 CATGTATACGTGCCCGGTGT 60.179 55.000 12.03 0.00 38.78 4.16
4058 4229 2.159296 CCGGTGTCTATGTTCGTGATGA 60.159 50.000 0.00 0.00 0.00 2.92
4072 4243 2.813754 CGTGATGATGAAACACAACCCT 59.186 45.455 0.00 0.00 34.69 4.34
4121 4292 3.814504 AGGGAGGAAAGCATCAGAAAA 57.185 42.857 0.00 0.00 0.00 2.29
4193 4365 4.492494 AATCCAATGGGCAAGGAAAATC 57.508 40.909 0.00 0.00 34.62 2.17
4195 4367 4.329638 TCCAATGGGCAAGGAAAATCTA 57.670 40.909 0.00 0.00 0.00 1.98
4196 4368 4.023291 TCCAATGGGCAAGGAAAATCTAC 58.977 43.478 0.00 0.00 0.00 2.59
4197 4369 3.181487 CCAATGGGCAAGGAAAATCTACG 60.181 47.826 0.00 0.00 0.00 3.51
4198 4370 2.871096 TGGGCAAGGAAAATCTACGT 57.129 45.000 0.00 0.00 0.00 3.57
4233 4405 8.649973 AGAATAGGAAAACAATACGCTAAGAG 57.350 34.615 0.00 0.00 0.00 2.85
4234 4406 6.846325 ATAGGAAAACAATACGCTAAGAGC 57.154 37.500 0.00 0.00 38.02 4.09
4235 4407 4.575885 AGGAAAACAATACGCTAAGAGCA 58.424 39.130 0.00 0.00 42.58 4.26
4236 4408 5.186198 AGGAAAACAATACGCTAAGAGCAT 58.814 37.500 0.00 0.00 42.58 3.79
4237 4409 5.294552 AGGAAAACAATACGCTAAGAGCATC 59.705 40.000 0.00 0.00 42.58 3.91
4250 4422 1.078848 AGCATCTCCACTCGTTGGC 60.079 57.895 1.35 0.00 46.47 4.52
4251 4423 2.109126 GCATCTCCACTCGTTGGCC 61.109 63.158 0.00 0.00 46.47 5.36
4252 4424 1.450312 CATCTCCACTCGTTGGCCC 60.450 63.158 0.00 0.00 46.47 5.80
4253 4425 2.670148 ATCTCCACTCGTTGGCCCC 61.670 63.158 0.00 0.00 46.47 5.80
4254 4426 4.410400 CTCCACTCGTTGGCCCCC 62.410 72.222 0.00 0.00 46.47 5.40
4270 4442 3.520623 CCCCAGGGGCTTGAAATAG 57.479 57.895 13.35 0.00 35.35 1.73
4271 4443 0.631212 CCCCAGGGGCTTGAAATAGT 59.369 55.000 13.35 0.00 35.35 2.12
4272 4444 1.686115 CCCCAGGGGCTTGAAATAGTG 60.686 57.143 13.35 0.00 35.35 2.74
4273 4445 1.106285 CCAGGGGCTTGAAATAGTGC 58.894 55.000 0.00 0.00 0.00 4.40
4274 4446 1.106285 CAGGGGCTTGAAATAGTGCC 58.894 55.000 0.00 0.00 44.22 5.01
4275 4447 0.704076 AGGGGCTTGAAATAGTGCCA 59.296 50.000 5.21 0.00 46.53 4.92
4276 4448 0.817654 GGGGCTTGAAATAGTGCCAC 59.182 55.000 5.21 0.00 46.53 5.01
4277 4449 0.817654 GGGCTTGAAATAGTGCCACC 59.182 55.000 5.21 0.00 46.53 4.61
4278 4450 1.616994 GGGCTTGAAATAGTGCCACCT 60.617 52.381 5.21 0.00 46.53 4.00
4279 4451 1.474077 GGCTTGAAATAGTGCCACCTG 59.526 52.381 0.00 0.00 44.34 4.00
4298 4470 2.356194 GCCCACTTTTGGCGCAAG 60.356 61.111 10.83 7.13 42.35 4.01
4301 4473 0.875474 CCCACTTTTGGCGCAAGTTG 60.875 55.000 10.83 6.47 42.35 3.16
4311 4484 1.540146 GGCGCAAGTTGGACCAATTTT 60.540 47.619 10.83 5.69 41.68 1.82
4361 4534 7.793427 CACAAATTCAACCGAAGCTAATTTTTG 59.207 33.333 0.00 0.00 33.74 2.44
4373 4546 7.214449 CGAAGCTAATTTTTGTCACATAGTTCG 59.786 37.037 0.00 0.00 0.00 3.95
4377 4550 7.801315 GCTAATTTTTGTCACATAGTTCGTCAA 59.199 33.333 0.00 0.00 0.00 3.18
4383 4556 7.490962 TTGTCACATAGTTCGTCAAAGAAAT 57.509 32.000 0.00 0.00 32.88 2.17
4439 4622 9.520204 AGACAGTTCAACAAATAAAAACTCATG 57.480 29.630 0.00 0.00 0.00 3.07
4484 4668 0.326522 TGCCCTTGAGCCTCCATAGA 60.327 55.000 0.00 0.00 0.00 1.98
4502 4686 5.125257 CCATAGATGCTCTATCAGATCGTGT 59.875 44.000 3.55 0.00 37.58 4.49
4525 4709 2.497138 CAGTTCTTGATGCACCTGTGA 58.503 47.619 0.51 0.00 0.00 3.58
4537 4721 1.821753 CACCTGTGAGTCTCGGATCTT 59.178 52.381 2.51 0.00 0.00 2.40
4604 4788 2.123589 TCAACTTGGACAAGAGGACCA 58.876 47.619 18.15 0.00 40.79 4.02
4675 4867 7.226128 GCTCTCAATGATCATGTTGTCAAGATA 59.774 37.037 9.46 0.00 33.07 1.98
4700 4892 0.033796 ACAAGCCATGACCTCCCATG 60.034 55.000 0.00 0.00 42.58 3.66
4733 4925 1.982395 CAGGTCTGAGCGGGGTACA 60.982 63.158 0.62 0.00 0.00 2.90
4740 4932 1.218316 GAGCGGGGTACAGGACAAG 59.782 63.158 0.00 0.00 0.00 3.16
4774 4966 2.203480 AGCACACCAAATGCCCGT 60.203 55.556 0.00 0.00 44.53 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.856607 GAGAAGGCGACGGCGGAG 62.857 72.222 15.06 5.57 41.24 4.63
4 5 3.418744 GAGAGGAGAAGGCGACGGC 62.419 68.421 14.41 14.41 38.90 5.68
5 6 2.046864 TGAGAGGAGAAGGCGACGG 61.047 63.158 0.00 0.00 0.00 4.79
6 7 1.137825 GTGAGAGGAGAAGGCGACG 59.862 63.158 0.00 0.00 0.00 5.12
7 8 0.968393 AGGTGAGAGGAGAAGGCGAC 60.968 60.000 0.00 0.00 0.00 5.19
8 9 0.251832 AAGGTGAGAGGAGAAGGCGA 60.252 55.000 0.00 0.00 0.00 5.54
9 10 0.174617 GAAGGTGAGAGGAGAAGGCG 59.825 60.000 0.00 0.00 0.00 5.52
10 11 1.480545 GAGAAGGTGAGAGGAGAAGGC 59.519 57.143 0.00 0.00 0.00 4.35
11 12 3.100207 AGAGAAGGTGAGAGGAGAAGG 57.900 52.381 0.00 0.00 0.00 3.46
12 13 3.447229 GGAAGAGAAGGTGAGAGGAGAAG 59.553 52.174 0.00 0.00 0.00 2.85
13 14 3.181417 TGGAAGAGAAGGTGAGAGGAGAA 60.181 47.826 0.00 0.00 0.00 2.87
14 15 2.380249 TGGAAGAGAAGGTGAGAGGAGA 59.620 50.000 0.00 0.00 0.00 3.71
15 16 2.813907 TGGAAGAGAAGGTGAGAGGAG 58.186 52.381 0.00 0.00 0.00 3.69
16 17 3.260269 TTGGAAGAGAAGGTGAGAGGA 57.740 47.619 0.00 0.00 0.00 3.71
17 18 3.430098 CGATTGGAAGAGAAGGTGAGAGG 60.430 52.174 0.00 0.00 0.00 3.69
18 19 3.445450 TCGATTGGAAGAGAAGGTGAGAG 59.555 47.826 0.00 0.00 0.00 3.20
19 20 3.431415 TCGATTGGAAGAGAAGGTGAGA 58.569 45.455 0.00 0.00 0.00 3.27
20 21 3.876274 TCGATTGGAAGAGAAGGTGAG 57.124 47.619 0.00 0.00 0.00 3.51
21 22 4.222810 TCAATCGATTGGAAGAGAAGGTGA 59.777 41.667 32.03 10.40 38.30 4.02
22 23 4.507710 TCAATCGATTGGAAGAGAAGGTG 58.492 43.478 32.03 8.25 38.30 4.00
23 24 4.826274 TCAATCGATTGGAAGAGAAGGT 57.174 40.909 32.03 0.00 38.30 3.50
24 25 5.064452 CAGTTCAATCGATTGGAAGAGAAGG 59.936 44.000 32.03 12.91 38.30 3.46
25 26 5.641209 ACAGTTCAATCGATTGGAAGAGAAG 59.359 40.000 32.03 18.12 38.30 2.85
26 27 5.409520 CACAGTTCAATCGATTGGAAGAGAA 59.590 40.000 32.03 18.15 38.30 2.87
27 28 4.931601 CACAGTTCAATCGATTGGAAGAGA 59.068 41.667 32.03 13.57 38.30 3.10
28 29 4.093998 CCACAGTTCAATCGATTGGAAGAG 59.906 45.833 32.03 20.70 38.30 2.85
29 30 4.002982 CCACAGTTCAATCGATTGGAAGA 58.997 43.478 32.03 14.60 38.30 2.87
30 31 3.127548 CCCACAGTTCAATCGATTGGAAG 59.872 47.826 32.03 23.14 38.30 3.46
31 32 3.081061 CCCACAGTTCAATCGATTGGAA 58.919 45.455 32.03 22.64 38.30 3.53
32 33 2.617788 CCCCACAGTTCAATCGATTGGA 60.618 50.000 32.03 24.76 38.30 3.53
33 34 1.745087 CCCCACAGTTCAATCGATTGG 59.255 52.381 32.03 20.63 38.30 3.16
34 35 2.162208 CACCCCACAGTTCAATCGATTG 59.838 50.000 28.48 28.48 39.10 2.67
35 36 2.436417 CACCCCACAGTTCAATCGATT 58.564 47.619 4.39 4.39 0.00 3.34
36 37 1.340017 CCACCCCACAGTTCAATCGAT 60.340 52.381 0.00 0.00 0.00 3.59
37 38 0.036164 CCACCCCACAGTTCAATCGA 59.964 55.000 0.00 0.00 0.00 3.59
38 39 0.960364 CCCACCCCACAGTTCAATCG 60.960 60.000 0.00 0.00 0.00 3.34
39 40 0.112412 ACCCACCCCACAGTTCAATC 59.888 55.000 0.00 0.00 0.00 2.67
40 41 0.560688 AACCCACCCCACAGTTCAAT 59.439 50.000 0.00 0.00 0.00 2.57
41 42 0.396417 CAACCCACCCCACAGTTCAA 60.396 55.000 0.00 0.00 0.00 2.69
42 43 1.228793 CAACCCACCCCACAGTTCA 59.771 57.895 0.00 0.00 0.00 3.18
43 44 1.106944 CACAACCCACCCCACAGTTC 61.107 60.000 0.00 0.00 0.00 3.01
44 45 1.076339 CACAACCCACCCCACAGTT 60.076 57.895 0.00 0.00 0.00 3.16
45 46 2.600731 CACAACCCACCCCACAGT 59.399 61.111 0.00 0.00 0.00 3.55
46 47 2.912025 GCACAACCCACCCCACAG 60.912 66.667 0.00 0.00 0.00 3.66
47 48 4.885270 CGCACAACCCACCCCACA 62.885 66.667 0.00 0.00 0.00 4.17
48 49 4.572571 TCGCACAACCCACCCCAC 62.573 66.667 0.00 0.00 0.00 4.61
49 50 4.263572 CTCGCACAACCCACCCCA 62.264 66.667 0.00 0.00 0.00 4.96
50 51 2.400269 TTACTCGCACAACCCACCCC 62.400 60.000 0.00 0.00 0.00 4.95
51 52 0.322187 ATTACTCGCACAACCCACCC 60.322 55.000 0.00 0.00 0.00 4.61
52 53 0.802494 CATTACTCGCACAACCCACC 59.198 55.000 0.00 0.00 0.00 4.61
53 54 1.803334 TCATTACTCGCACAACCCAC 58.197 50.000 0.00 0.00 0.00 4.61
54 55 2.224426 ACTTCATTACTCGCACAACCCA 60.224 45.455 0.00 0.00 0.00 4.51
55 56 2.159627 CACTTCATTACTCGCACAACCC 59.840 50.000 0.00 0.00 0.00 4.11
56 57 2.159627 CCACTTCATTACTCGCACAACC 59.840 50.000 0.00 0.00 0.00 3.77
57 58 2.159627 CCCACTTCATTACTCGCACAAC 59.840 50.000 0.00 0.00 0.00 3.32
58 59 2.422597 CCCACTTCATTACTCGCACAA 58.577 47.619 0.00 0.00 0.00 3.33
59 60 1.338674 CCCCACTTCATTACTCGCACA 60.339 52.381 0.00 0.00 0.00 4.57
60 61 1.066430 TCCCCACTTCATTACTCGCAC 60.066 52.381 0.00 0.00 0.00 5.34
61 62 1.207089 CTCCCCACTTCATTACTCGCA 59.793 52.381 0.00 0.00 0.00 5.10
62 63 1.207329 ACTCCCCACTTCATTACTCGC 59.793 52.381 0.00 0.00 0.00 5.03
63 64 4.730949 TTACTCCCCACTTCATTACTCG 57.269 45.455 0.00 0.00 0.00 4.18
64 65 5.823045 CCATTTACTCCCCACTTCATTACTC 59.177 44.000 0.00 0.00 0.00 2.59
65 66 5.491078 TCCATTTACTCCCCACTTCATTACT 59.509 40.000 0.00 0.00 0.00 2.24
66 67 5.751586 TCCATTTACTCCCCACTTCATTAC 58.248 41.667 0.00 0.00 0.00 1.89
67 68 6.184789 GTTCCATTTACTCCCCACTTCATTA 58.815 40.000 0.00 0.00 0.00 1.90
68 69 4.946160 TCCATTTACTCCCCACTTCATT 57.054 40.909 0.00 0.00 0.00 2.57
69 70 4.569865 GGTTCCATTTACTCCCCACTTCAT 60.570 45.833 0.00 0.00 0.00 2.57
70 71 3.245122 GGTTCCATTTACTCCCCACTTCA 60.245 47.826 0.00 0.00 0.00 3.02
71 72 3.353557 GGTTCCATTTACTCCCCACTTC 58.646 50.000 0.00 0.00 0.00 3.01
72 73 2.290705 CGGTTCCATTTACTCCCCACTT 60.291 50.000 0.00 0.00 0.00 3.16
73 74 1.280998 CGGTTCCATTTACTCCCCACT 59.719 52.381 0.00 0.00 0.00 4.00
74 75 1.003928 ACGGTTCCATTTACTCCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
75 76 1.003812 CACGGTTCCATTTACTCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
76 77 1.279846 TCACGGTTCCATTTACTCCCC 59.720 52.381 0.00 0.00 0.00 4.81
77 78 2.629051 CTCACGGTTCCATTTACTCCC 58.371 52.381 0.00 0.00 0.00 4.30
78 79 2.629051 CCTCACGGTTCCATTTACTCC 58.371 52.381 0.00 0.00 0.00 3.85
79 80 2.629051 CCCTCACGGTTCCATTTACTC 58.371 52.381 0.00 0.00 0.00 2.59
80 81 1.280998 CCCCTCACGGTTCCATTTACT 59.719 52.381 0.00 0.00 0.00 2.24
81 82 1.279846 TCCCCTCACGGTTCCATTTAC 59.720 52.381 0.00 0.00 0.00 2.01
82 83 1.557832 CTCCCCTCACGGTTCCATTTA 59.442 52.381 0.00 0.00 0.00 1.40
83 84 0.328258 CTCCCCTCACGGTTCCATTT 59.672 55.000 0.00 0.00 0.00 2.32
84 85 1.562672 CCTCCCCTCACGGTTCCATT 61.563 60.000 0.00 0.00 0.00 3.16
85 86 1.995626 CCTCCCCTCACGGTTCCAT 60.996 63.158 0.00 0.00 0.00 3.41
86 87 2.606519 CCTCCCCTCACGGTTCCA 60.607 66.667 0.00 0.00 0.00 3.53
87 88 3.400054 CCCTCCCCTCACGGTTCC 61.400 72.222 0.00 0.00 0.00 3.62
88 89 3.400054 CCCCTCCCCTCACGGTTC 61.400 72.222 0.00 0.00 0.00 3.62
109 110 3.335534 AACCACGTCGCGCACTTC 61.336 61.111 8.75 0.00 0.00 3.01
110 111 3.636043 CAACCACGTCGCGCACTT 61.636 61.111 8.75 0.00 0.00 3.16
111 112 4.578898 TCAACCACGTCGCGCACT 62.579 61.111 8.75 0.00 0.00 4.40
112 113 4.349871 GTCAACCACGTCGCGCAC 62.350 66.667 8.75 3.87 0.00 5.34
155 156 4.404654 GGAACTGCTTTGCGGCCG 62.405 66.667 24.05 24.05 38.71 6.13
156 157 3.294493 TGGAACTGCTTTGCGGCC 61.294 61.111 0.00 0.00 38.71 6.13
157 158 2.050077 GTGGAACTGCTTTGCGGC 60.050 61.111 0.00 0.00 38.71 6.53
182 183 2.734948 TTAACGGTTGCCACTCGGGG 62.735 60.000 3.07 0.00 37.04 5.73
183 184 1.301874 TTAACGGTTGCCACTCGGG 60.302 57.895 3.07 0.00 40.85 5.14
184 185 1.571215 GGTTAACGGTTGCCACTCGG 61.571 60.000 3.07 0.00 0.00 4.63
185 186 1.864176 GGTTAACGGTTGCCACTCG 59.136 57.895 3.07 0.00 0.00 4.18
186 187 1.864176 CGGTTAACGGTTGCCACTC 59.136 57.895 3.07 0.00 39.42 3.51
187 188 2.255881 GCGGTTAACGGTTGCCACT 61.256 57.895 13.90 0.00 44.51 4.00
188 189 2.253154 GCGGTTAACGGTTGCCAC 59.747 61.111 13.90 0.00 44.51 5.01
189 190 3.347405 CGCGGTTAACGGTTGCCA 61.347 61.111 13.90 0.00 44.51 4.92
190 191 4.092652 CCGCGGTTAACGGTTGCC 62.093 66.667 19.50 5.05 45.70 4.52
197 198 1.004679 TTGTCTCCCCGCGGTTAAC 60.005 57.895 26.12 16.42 0.00 2.01
198 199 1.004679 GTTGTCTCCCCGCGGTTAA 60.005 57.895 26.12 7.85 0.00 2.01
199 200 2.658422 GTTGTCTCCCCGCGGTTA 59.342 61.111 26.12 10.69 0.00 2.85
200 201 4.324991 GGTTGTCTCCCCGCGGTT 62.325 66.667 26.12 0.00 0.00 4.44
207 208 4.309950 ACACGCCGGTTGTCTCCC 62.310 66.667 1.90 0.00 0.00 4.30
208 209 3.041940 CACACGCCGGTTGTCTCC 61.042 66.667 1.90 0.00 0.00 3.71
209 210 3.041940 CCACACGCCGGTTGTCTC 61.042 66.667 1.90 0.00 0.00 3.36
210 211 4.619227 CCCACACGCCGGTTGTCT 62.619 66.667 1.90 0.00 0.00 3.41
217 218 4.160635 GAATTCGCCCACACGCCG 62.161 66.667 0.00 0.00 0.00 6.46
218 219 1.862602 AAAGAATTCGCCCACACGCC 61.863 55.000 0.00 0.00 0.00 5.68
219 220 0.454452 GAAAGAATTCGCCCACACGC 60.454 55.000 0.00 0.00 0.00 5.34
220 221 0.871722 TGAAAGAATTCGCCCACACG 59.128 50.000 0.00 0.00 38.46 4.49
221 222 1.606668 TGTGAAAGAATTCGCCCACAC 59.393 47.619 18.86 15.94 43.85 3.82
222 223 1.606668 GTGTGAAAGAATTCGCCCACA 59.393 47.619 18.86 18.86 43.85 4.17
223 224 1.606668 TGTGTGAAAGAATTCGCCCAC 59.393 47.619 15.44 15.44 43.85 4.61
224 225 1.606668 GTGTGTGAAAGAATTCGCCCA 59.393 47.619 0.00 0.00 43.85 5.36
225 226 1.068541 GGTGTGTGAAAGAATTCGCCC 60.069 52.381 0.00 0.00 43.85 6.13
226 227 1.606668 TGGTGTGTGAAAGAATTCGCC 59.393 47.619 0.00 0.00 43.85 5.54
227 228 2.032799 TGTGGTGTGTGAAAGAATTCGC 59.967 45.455 0.00 0.00 44.55 4.70
228 229 3.064682 TGTGTGGTGTGTGAAAGAATTCG 59.935 43.478 0.00 0.00 38.46 3.34
229 230 4.351192 GTGTGTGGTGTGTGAAAGAATTC 58.649 43.478 0.00 0.00 36.04 2.17
230 231 3.181501 CGTGTGTGGTGTGTGAAAGAATT 60.182 43.478 0.00 0.00 0.00 2.17
231 232 2.354510 CGTGTGTGGTGTGTGAAAGAAT 59.645 45.455 0.00 0.00 0.00 2.40
232 233 1.735018 CGTGTGTGGTGTGTGAAAGAA 59.265 47.619 0.00 0.00 0.00 2.52
233 234 1.364721 CGTGTGTGGTGTGTGAAAGA 58.635 50.000 0.00 0.00 0.00 2.52
234 235 0.248054 GCGTGTGTGGTGTGTGAAAG 60.248 55.000 0.00 0.00 0.00 2.62
235 236 1.797441 GCGTGTGTGGTGTGTGAAA 59.203 52.632 0.00 0.00 0.00 2.69
236 237 2.456948 CGCGTGTGTGGTGTGTGAA 61.457 57.895 0.00 0.00 0.00 3.18
237 238 2.888051 CGCGTGTGTGGTGTGTGA 60.888 61.111 0.00 0.00 0.00 3.58
238 239 2.888051 TCGCGTGTGTGGTGTGTG 60.888 61.111 5.77 0.00 0.00 3.82
239 240 2.845752 AAGTCGCGTGTGTGGTGTGT 62.846 55.000 5.77 0.00 0.00 3.72
240 241 2.171079 AAGTCGCGTGTGTGGTGTG 61.171 57.895 5.77 0.00 0.00 3.82
241 242 2.171079 CAAGTCGCGTGTGTGGTGT 61.171 57.895 5.77 0.00 0.00 4.16
242 243 2.089433 GACAAGTCGCGTGTGTGGTG 62.089 60.000 14.84 4.49 0.00 4.17
243 244 1.881252 GACAAGTCGCGTGTGTGGT 60.881 57.895 14.84 4.11 0.00 4.16
244 245 2.594962 GGACAAGTCGCGTGTGTGG 61.595 63.158 14.84 1.13 0.00 4.17
245 246 0.318360 TAGGACAAGTCGCGTGTGTG 60.318 55.000 14.84 8.19 0.00 3.82
246 247 0.318445 GTAGGACAAGTCGCGTGTGT 60.318 55.000 5.77 8.97 0.00 3.72
247 248 1.334992 CGTAGGACAAGTCGCGTGTG 61.335 60.000 5.77 5.40 0.00 3.82
248 249 1.081641 CGTAGGACAAGTCGCGTGT 60.082 57.895 5.77 2.50 0.00 4.49
249 250 1.081641 ACGTAGGACAAGTCGCGTG 60.082 57.895 5.77 0.00 34.09 5.34
250 251 1.081641 CACGTAGGACAAGTCGCGT 60.082 57.895 5.77 9.19 35.05 6.01
251 252 1.063951 GTCACGTAGGACAAGTCGCG 61.064 60.000 0.00 0.00 37.73 5.87
252 253 0.039798 TGTCACGTAGGACAAGTCGC 60.040 55.000 6.27 0.00 44.34 5.19
258 259 2.963548 TTTGTGTGTCACGTAGGACA 57.036 45.000 4.71 4.71 45.06 4.02
259 260 3.805422 TGATTTTGTGTGTCACGTAGGAC 59.195 43.478 0.00 0.00 37.14 3.85
260 261 4.055360 CTGATTTTGTGTGTCACGTAGGA 58.945 43.478 0.00 0.00 37.14 2.94
261 262 3.363970 GCTGATTTTGTGTGTCACGTAGG 60.364 47.826 0.00 0.00 37.14 3.18
262 263 3.494626 AGCTGATTTTGTGTGTCACGTAG 59.505 43.478 0.00 0.00 37.14 3.51
263 264 3.462982 AGCTGATTTTGTGTGTCACGTA 58.537 40.909 0.00 0.00 37.14 3.57
264 265 2.288666 AGCTGATTTTGTGTGTCACGT 58.711 42.857 0.00 0.00 37.14 4.49
265 266 4.466567 TTAGCTGATTTTGTGTGTCACG 57.533 40.909 0.00 0.00 37.14 4.35
266 267 5.171337 CGTTTTAGCTGATTTTGTGTGTCAC 59.829 40.000 0.00 0.00 34.56 3.67
267 268 5.163703 ACGTTTTAGCTGATTTTGTGTGTCA 60.164 36.000 0.00 0.00 0.00 3.58
268 269 5.171337 CACGTTTTAGCTGATTTTGTGTGTC 59.829 40.000 0.00 0.00 0.00 3.67
269 270 5.034152 CACGTTTTAGCTGATTTTGTGTGT 58.966 37.500 0.00 0.00 0.00 3.72
270 271 4.085619 GCACGTTTTAGCTGATTTTGTGTG 60.086 41.667 0.00 0.00 0.00 3.82
271 272 4.041723 GCACGTTTTAGCTGATTTTGTGT 58.958 39.130 0.00 0.00 0.00 3.72
272 273 3.425193 GGCACGTTTTAGCTGATTTTGTG 59.575 43.478 0.00 0.00 0.00 3.33
273 274 3.067461 TGGCACGTTTTAGCTGATTTTGT 59.933 39.130 0.00 0.00 0.00 2.83
274 275 3.637432 TGGCACGTTTTAGCTGATTTTG 58.363 40.909 0.00 0.00 0.00 2.44
275 276 4.037446 TCTTGGCACGTTTTAGCTGATTTT 59.963 37.500 0.00 0.00 0.00 1.82
276 277 3.568007 TCTTGGCACGTTTTAGCTGATTT 59.432 39.130 0.00 0.00 0.00 2.17
277 278 3.146066 TCTTGGCACGTTTTAGCTGATT 58.854 40.909 0.00 0.00 0.00 2.57
278 279 2.778299 TCTTGGCACGTTTTAGCTGAT 58.222 42.857 0.00 0.00 0.00 2.90
279 280 2.248280 TCTTGGCACGTTTTAGCTGA 57.752 45.000 0.00 0.00 0.00 4.26
280 281 3.058293 TGAATCTTGGCACGTTTTAGCTG 60.058 43.478 0.00 0.00 0.00 4.24
281 282 3.146066 TGAATCTTGGCACGTTTTAGCT 58.854 40.909 0.00 0.00 0.00 3.32
282 283 3.552604 TGAATCTTGGCACGTTTTAGC 57.447 42.857 0.00 0.00 0.00 3.09
283 284 3.853671 GCATGAATCTTGGCACGTTTTAG 59.146 43.478 0.00 0.00 0.00 1.85
284 285 3.254411 TGCATGAATCTTGGCACGTTTTA 59.746 39.130 0.00 0.00 0.00 1.52
285 286 2.035704 TGCATGAATCTTGGCACGTTTT 59.964 40.909 0.00 0.00 0.00 2.43
286 287 1.612950 TGCATGAATCTTGGCACGTTT 59.387 42.857 0.00 0.00 0.00 3.60
287 288 1.200716 CTGCATGAATCTTGGCACGTT 59.799 47.619 0.00 0.00 32.06 3.99
288 289 0.806868 CTGCATGAATCTTGGCACGT 59.193 50.000 0.00 0.00 32.06 4.49
289 290 1.089112 TCTGCATGAATCTTGGCACG 58.911 50.000 0.00 0.00 32.06 5.34
290 291 2.416431 GGTTCTGCATGAATCTTGGCAC 60.416 50.000 0.00 0.00 36.99 5.01
291 292 1.820519 GGTTCTGCATGAATCTTGGCA 59.179 47.619 0.00 0.00 36.99 4.92
292 293 2.097825 AGGTTCTGCATGAATCTTGGC 58.902 47.619 0.00 0.00 43.11 4.52
293 294 5.591472 TCAATAGGTTCTGCATGAATCTTGG 59.409 40.000 14.26 7.21 43.11 3.61
294 295 6.688637 TCAATAGGTTCTGCATGAATCTTG 57.311 37.500 14.26 9.42 43.11 3.02
295 296 6.183360 CGTTCAATAGGTTCTGCATGAATCTT 60.183 38.462 14.26 3.82 43.11 2.40
296 297 5.295292 CGTTCAATAGGTTCTGCATGAATCT 59.705 40.000 13.74 13.74 46.85 2.40
297 298 5.504665 CCGTTCAATAGGTTCTGCATGAATC 60.505 44.000 0.00 0.66 36.99 2.52
298 299 4.336433 CCGTTCAATAGGTTCTGCATGAAT 59.664 41.667 0.00 0.00 36.99 2.57
299 300 3.689161 CCGTTCAATAGGTTCTGCATGAA 59.311 43.478 0.00 0.00 0.00 2.57
300 301 3.270027 CCGTTCAATAGGTTCTGCATGA 58.730 45.455 0.00 0.00 0.00 3.07
301 302 2.223340 GCCGTTCAATAGGTTCTGCATG 60.223 50.000 0.00 0.00 0.00 4.06
302 303 2.017049 GCCGTTCAATAGGTTCTGCAT 58.983 47.619 0.00 0.00 0.00 3.96
303 304 1.448985 GCCGTTCAATAGGTTCTGCA 58.551 50.000 0.00 0.00 0.00 4.41
304 305 0.373716 CGCCGTTCAATAGGTTCTGC 59.626 55.000 0.00 0.00 0.00 4.26
305 306 2.004583 TCGCCGTTCAATAGGTTCTG 57.995 50.000 0.00 0.00 0.00 3.02
306 307 2.550978 CATCGCCGTTCAATAGGTTCT 58.449 47.619 0.00 0.00 0.00 3.01
307 308 1.597663 CCATCGCCGTTCAATAGGTTC 59.402 52.381 0.00 0.00 0.00 3.62
308 309 1.208535 TCCATCGCCGTTCAATAGGTT 59.791 47.619 0.00 0.00 0.00 3.50
309 310 0.828022 TCCATCGCCGTTCAATAGGT 59.172 50.000 0.00 0.00 0.00 3.08
310 311 1.867233 CTTCCATCGCCGTTCAATAGG 59.133 52.381 0.00 0.00 0.00 2.57
311 312 1.261619 GCTTCCATCGCCGTTCAATAG 59.738 52.381 0.00 0.00 0.00 1.73
312 313 1.295792 GCTTCCATCGCCGTTCAATA 58.704 50.000 0.00 0.00 0.00 1.90
313 314 1.705337 CGCTTCCATCGCCGTTCAAT 61.705 55.000 0.00 0.00 0.00 2.57
314 315 2.387445 CGCTTCCATCGCCGTTCAA 61.387 57.895 0.00 0.00 0.00 2.69
315 316 2.813474 CGCTTCCATCGCCGTTCA 60.813 61.111 0.00 0.00 0.00 3.18
316 317 2.813908 ACGCTTCCATCGCCGTTC 60.814 61.111 0.00 0.00 0.00 3.95
317 318 3.118454 CACGCTTCCATCGCCGTT 61.118 61.111 0.00 0.00 0.00 4.44
318 319 4.373116 ACACGCTTCCATCGCCGT 62.373 61.111 0.00 0.00 0.00 5.68
319 320 3.853330 CACACGCTTCCATCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
320 321 3.499737 CCACACGCTTCCATCGCC 61.500 66.667 0.00 0.00 0.00 5.54
321 322 2.325082 AACCACACGCTTCCATCGC 61.325 57.895 0.00 0.00 0.00 4.58
322 323 0.948623 TCAACCACACGCTTCCATCG 60.949 55.000 0.00 0.00 0.00 3.84
323 324 0.798776 CTCAACCACACGCTTCCATC 59.201 55.000 0.00 0.00 0.00 3.51
324 325 0.108585 ACTCAACCACACGCTTCCAT 59.891 50.000 0.00 0.00 0.00 3.41
325 326 0.107410 AACTCAACCACACGCTTCCA 60.107 50.000 0.00 0.00 0.00 3.53
326 327 0.307760 CAACTCAACCACACGCTTCC 59.692 55.000 0.00 0.00 0.00 3.46
327 328 0.307760 CCAACTCAACCACACGCTTC 59.692 55.000 0.00 0.00 0.00 3.86
328 329 1.724582 GCCAACTCAACCACACGCTT 61.725 55.000 0.00 0.00 0.00 4.68
329 330 2.186826 GCCAACTCAACCACACGCT 61.187 57.895 0.00 0.00 0.00 5.07
330 331 0.882927 TAGCCAACTCAACCACACGC 60.883 55.000 0.00 0.00 0.00 5.34
331 332 1.263217 GTTAGCCAACTCAACCACACG 59.737 52.381 0.00 0.00 0.00 4.49
332 333 1.263217 CGTTAGCCAACTCAACCACAC 59.737 52.381 0.00 0.00 32.09 3.82
333 334 1.588674 CGTTAGCCAACTCAACCACA 58.411 50.000 0.00 0.00 32.09 4.17
334 335 0.237498 GCGTTAGCCAACTCAACCAC 59.763 55.000 0.00 0.00 37.42 4.16
335 336 2.624169 GCGTTAGCCAACTCAACCA 58.376 52.632 0.00 0.00 37.42 3.67
346 347 1.501741 CACATGTGTGGGCGTTAGC 59.498 57.895 18.03 0.00 42.10 3.09
355 356 0.516877 CACTAACGCCCACATGTGTG 59.483 55.000 23.79 14.60 45.23 3.82
356 357 0.107831 ACACTAACGCCCACATGTGT 59.892 50.000 23.79 8.06 34.38 3.72
357 358 1.234821 AACACTAACGCCCACATGTG 58.765 50.000 19.31 19.31 0.00 3.21
358 359 1.975660 AAACACTAACGCCCACATGT 58.024 45.000 0.00 0.00 0.00 3.21
359 360 2.292016 TGAAAACACTAACGCCCACATG 59.708 45.455 0.00 0.00 0.00 3.21
360 361 2.577700 TGAAAACACTAACGCCCACAT 58.422 42.857 0.00 0.00 0.00 3.21
361 362 2.039818 TGAAAACACTAACGCCCACA 57.960 45.000 0.00 0.00 0.00 4.17
362 363 3.252458 AGAATGAAAACACTAACGCCCAC 59.748 43.478 0.00 0.00 0.00 4.61
363 364 3.482436 AGAATGAAAACACTAACGCCCA 58.518 40.909 0.00 0.00 0.00 5.36
364 365 4.499037 AAGAATGAAAACACTAACGCCC 57.501 40.909 0.00 0.00 0.00 6.13
365 366 7.096353 GGTTAAAAGAATGAAAACACTAACGCC 60.096 37.037 0.00 0.00 0.00 5.68
366 367 7.356962 CGGTTAAAAGAATGAAAACACTAACGC 60.357 37.037 0.00 0.00 0.00 4.84
367 368 7.112426 CCGGTTAAAAGAATGAAAACACTAACG 59.888 37.037 0.00 0.00 0.00 3.18
368 369 7.916977 ACCGGTTAAAAGAATGAAAACACTAAC 59.083 33.333 0.00 0.00 0.00 2.34
369 370 7.998580 ACCGGTTAAAAGAATGAAAACACTAA 58.001 30.769 0.00 0.00 0.00 2.24
370 371 7.571080 ACCGGTTAAAAGAATGAAAACACTA 57.429 32.000 0.00 0.00 0.00 2.74
371 372 6.459670 ACCGGTTAAAAGAATGAAAACACT 57.540 33.333 0.00 0.00 0.00 3.55
372 373 7.096353 GCTAACCGGTTAAAAGAATGAAAACAC 60.096 37.037 26.41 0.00 0.00 3.32
373 374 6.919115 GCTAACCGGTTAAAAGAATGAAAACA 59.081 34.615 26.41 1.90 0.00 2.83
374 375 7.143340 AGCTAACCGGTTAAAAGAATGAAAAC 58.857 34.615 26.41 3.49 0.00 2.43
375 376 7.279750 AGCTAACCGGTTAAAAGAATGAAAA 57.720 32.000 26.41 3.01 0.00 2.29
376 377 6.887626 AGCTAACCGGTTAAAAGAATGAAA 57.112 33.333 26.41 3.22 0.00 2.69
377 378 7.010738 CGATAGCTAACCGGTTAAAAGAATGAA 59.989 37.037 26.41 3.75 0.00 2.57
378 379 6.477688 CGATAGCTAACCGGTTAAAAGAATGA 59.522 38.462 26.41 4.51 0.00 2.57
379 380 6.292703 CCGATAGCTAACCGGTTAAAAGAATG 60.293 42.308 26.41 14.56 38.55 2.67
380 381 5.756833 CCGATAGCTAACCGGTTAAAAGAAT 59.243 40.000 26.41 15.45 38.55 2.40
381 382 5.111293 CCGATAGCTAACCGGTTAAAAGAA 58.889 41.667 26.41 11.73 38.55 2.52
382 383 4.441913 CCCGATAGCTAACCGGTTAAAAGA 60.442 45.833 26.41 13.21 41.53 2.52
383 384 3.805971 CCCGATAGCTAACCGGTTAAAAG 59.194 47.826 26.41 18.44 41.53 2.27
384 385 3.795877 CCCGATAGCTAACCGGTTAAAA 58.204 45.455 26.41 15.35 41.53 1.52
385 386 2.483538 GCCCGATAGCTAACCGGTTAAA 60.484 50.000 26.41 15.68 41.53 1.52
386 387 1.069049 GCCCGATAGCTAACCGGTTAA 59.931 52.381 26.41 13.63 41.53 2.01
387 388 0.675633 GCCCGATAGCTAACCGGTTA 59.324 55.000 25.09 25.09 41.53 2.85
388 389 1.047034 AGCCCGATAGCTAACCGGTT 61.047 55.000 25.64 25.64 42.70 4.44
389 390 1.457079 AGCCCGATAGCTAACCGGT 60.457 57.895 26.14 0.00 42.70 5.28
390 391 1.006102 CAGCCCGATAGCTAACCGG 60.006 63.158 23.35 23.35 42.61 5.28
391 392 0.318784 GACAGCCCGATAGCTAACCG 60.319 60.000 0.00 4.68 42.61 4.44
392 393 1.000052 GAGACAGCCCGATAGCTAACC 60.000 57.143 0.00 0.00 42.61 2.85
393 394 1.957877 AGAGACAGCCCGATAGCTAAC 59.042 52.381 0.00 0.00 42.61 2.34
394 395 2.231529 GAGAGACAGCCCGATAGCTAA 58.768 52.381 0.00 0.00 42.61 3.09
395 396 1.545875 GGAGAGACAGCCCGATAGCTA 60.546 57.143 0.00 0.00 42.61 3.32
396 397 0.825840 GGAGAGACAGCCCGATAGCT 60.826 60.000 0.00 0.00 46.45 3.32
397 398 1.109920 TGGAGAGACAGCCCGATAGC 61.110 60.000 0.00 0.00 0.00 2.97
398 399 0.958091 CTGGAGAGACAGCCCGATAG 59.042 60.000 0.00 0.00 0.00 2.08
399 400 0.551396 TCTGGAGAGACAGCCCGATA 59.449 55.000 0.00 0.00 38.36 2.92
400 401 1.307986 TCTGGAGAGACAGCCCGAT 59.692 57.895 0.00 0.00 38.36 4.18
401 402 2.763902 TCTGGAGAGACAGCCCGA 59.236 61.111 0.00 0.00 38.36 5.14
408 409 3.670091 CGGTCTTAAACGTCTGGAGAGAC 60.670 52.174 0.00 0.00 44.70 3.36
409 410 2.486982 CGGTCTTAAACGTCTGGAGAGA 59.513 50.000 0.00 0.00 0.00 3.10
410 411 2.486982 TCGGTCTTAAACGTCTGGAGAG 59.513 50.000 0.00 0.00 0.00 3.20
411 412 2.507484 TCGGTCTTAAACGTCTGGAGA 58.493 47.619 0.00 0.00 0.00 3.71
412 413 3.505464 ATCGGTCTTAAACGTCTGGAG 57.495 47.619 0.00 0.00 0.00 3.86
413 414 3.947910 AATCGGTCTTAAACGTCTGGA 57.052 42.857 0.00 0.00 0.00 3.86
414 415 3.991773 TCAAATCGGTCTTAAACGTCTGG 59.008 43.478 0.00 0.00 0.00 3.86
415 416 4.921515 TCTCAAATCGGTCTTAAACGTCTG 59.078 41.667 0.00 0.00 0.00 3.51
416 417 4.922103 GTCTCAAATCGGTCTTAAACGTCT 59.078 41.667 0.00 0.00 0.00 4.18
417 418 4.682860 TGTCTCAAATCGGTCTTAAACGTC 59.317 41.667 0.00 0.00 0.00 4.34
418 419 4.446719 GTGTCTCAAATCGGTCTTAAACGT 59.553 41.667 0.00 0.00 0.00 3.99
419 420 4.684703 AGTGTCTCAAATCGGTCTTAAACG 59.315 41.667 0.00 0.00 0.00 3.60
420 421 5.694910 TCAGTGTCTCAAATCGGTCTTAAAC 59.305 40.000 0.00 0.00 0.00 2.01
421 422 5.694910 GTCAGTGTCTCAAATCGGTCTTAAA 59.305 40.000 0.00 0.00 0.00 1.52
422 423 5.221362 TGTCAGTGTCTCAAATCGGTCTTAA 60.221 40.000 0.00 0.00 0.00 1.85
423 424 4.279922 TGTCAGTGTCTCAAATCGGTCTTA 59.720 41.667 0.00 0.00 0.00 2.10
424 425 3.069586 TGTCAGTGTCTCAAATCGGTCTT 59.930 43.478 0.00 0.00 0.00 3.01
425 426 2.628178 TGTCAGTGTCTCAAATCGGTCT 59.372 45.455 0.00 0.00 0.00 3.85
426 427 2.989840 CTGTCAGTGTCTCAAATCGGTC 59.010 50.000 0.00 0.00 0.00 4.79
427 428 2.628178 TCTGTCAGTGTCTCAAATCGGT 59.372 45.455 0.00 0.00 0.00 4.69
428 429 3.303881 TCTGTCAGTGTCTCAAATCGG 57.696 47.619 0.00 0.00 0.00 4.18
429 430 5.406477 TCAAATCTGTCAGTGTCTCAAATCG 59.594 40.000 0.00 0.00 0.00 3.34
430 431 6.128336 CCTCAAATCTGTCAGTGTCTCAAATC 60.128 42.308 0.00 0.00 0.00 2.17
431 432 5.704515 CCTCAAATCTGTCAGTGTCTCAAAT 59.295 40.000 0.00 0.00 0.00 2.32
432 433 5.059161 CCTCAAATCTGTCAGTGTCTCAAA 58.941 41.667 0.00 0.00 0.00 2.69
433 434 4.635223 CCTCAAATCTGTCAGTGTCTCAA 58.365 43.478 0.00 0.00 0.00 3.02
434 435 3.555795 GCCTCAAATCTGTCAGTGTCTCA 60.556 47.826 0.00 0.00 0.00 3.27
435 436 2.999355 GCCTCAAATCTGTCAGTGTCTC 59.001 50.000 0.00 0.00 0.00 3.36
436 437 2.611473 CGCCTCAAATCTGTCAGTGTCT 60.611 50.000 0.00 0.00 0.00 3.41
437 438 1.728971 CGCCTCAAATCTGTCAGTGTC 59.271 52.381 0.00 0.00 0.00 3.67
438 439 1.800805 CGCCTCAAATCTGTCAGTGT 58.199 50.000 0.00 0.00 0.00 3.55
439 440 0.445436 GCGCCTCAAATCTGTCAGTG 59.555 55.000 0.00 0.00 0.00 3.66
440 441 0.035317 TGCGCCTCAAATCTGTCAGT 59.965 50.000 4.18 0.00 0.00 3.41
441 442 1.129998 CTTGCGCCTCAAATCTGTCAG 59.870 52.381 4.18 0.00 33.65 3.51
442 443 1.159285 CTTGCGCCTCAAATCTGTCA 58.841 50.000 4.18 0.00 33.65 3.58
443 444 1.442769 TCTTGCGCCTCAAATCTGTC 58.557 50.000 4.18 0.00 33.65 3.51
444 445 1.741706 CATCTTGCGCCTCAAATCTGT 59.258 47.619 4.18 0.00 33.65 3.41
445 446 1.533338 GCATCTTGCGCCTCAAATCTG 60.533 52.381 4.18 0.00 33.65 2.90
446 447 0.737219 GCATCTTGCGCCTCAAATCT 59.263 50.000 4.18 0.00 33.65 2.40
447 448 3.247033 GCATCTTGCGCCTCAAATC 57.753 52.632 4.18 0.00 33.65 2.17
461 462 2.609244 GGCCGAGAGATGTAAGAGCATC 60.609 54.545 0.00 0.00 44.02 3.91
462 463 1.342819 GGCCGAGAGATGTAAGAGCAT 59.657 52.381 0.00 0.00 0.00 3.79
463 464 0.747255 GGCCGAGAGATGTAAGAGCA 59.253 55.000 0.00 0.00 0.00 4.26
464 465 0.747255 TGGCCGAGAGATGTAAGAGC 59.253 55.000 0.00 0.00 0.00 4.09
465 466 3.742433 ATTGGCCGAGAGATGTAAGAG 57.258 47.619 0.00 0.00 0.00 2.85
466 467 3.181465 GGAATTGGCCGAGAGATGTAAGA 60.181 47.826 0.00 0.00 0.00 2.10
467 468 3.134458 GGAATTGGCCGAGAGATGTAAG 58.866 50.000 0.00 0.00 0.00 2.34
468 469 3.194005 GGAATTGGCCGAGAGATGTAA 57.806 47.619 0.00 0.00 0.00 2.41
469 470 2.910688 GGAATTGGCCGAGAGATGTA 57.089 50.000 0.00 0.00 0.00 2.29
470 471 3.788672 GGAATTGGCCGAGAGATGT 57.211 52.632 0.00 0.00 0.00 3.06
479 480 2.418083 CCCTTGCTCGGAATTGGCC 61.418 63.158 0.00 0.00 0.00 5.36
480 481 0.753111 ATCCCTTGCTCGGAATTGGC 60.753 55.000 0.00 0.00 31.75 4.52
481 482 1.027357 CATCCCTTGCTCGGAATTGG 58.973 55.000 0.00 0.00 31.75 3.16
482 483 1.945394 CTCATCCCTTGCTCGGAATTG 59.055 52.381 0.00 0.00 31.75 2.32
483 484 1.748591 GCTCATCCCTTGCTCGGAATT 60.749 52.381 0.00 0.00 31.75 2.17
484 485 0.179034 GCTCATCCCTTGCTCGGAAT 60.179 55.000 0.00 0.00 31.75 3.01
485 486 1.221840 GCTCATCCCTTGCTCGGAA 59.778 57.895 0.00 0.00 31.75 4.30
486 487 1.687146 AGCTCATCCCTTGCTCGGA 60.687 57.895 0.00 0.00 30.41 4.55
487 488 1.523258 CAGCTCATCCCTTGCTCGG 60.523 63.158 0.00 0.00 34.51 4.63
488 489 0.530211 CTCAGCTCATCCCTTGCTCG 60.530 60.000 0.00 0.00 34.51 5.03
489 490 0.814812 GCTCAGCTCATCCCTTGCTC 60.815 60.000 0.00 0.00 34.51 4.26
490 491 1.224039 GCTCAGCTCATCCCTTGCT 59.776 57.895 0.00 0.00 37.56 3.91
491 492 1.096386 CAGCTCAGCTCATCCCTTGC 61.096 60.000 0.00 0.00 36.40 4.01
492 493 1.096386 GCAGCTCAGCTCATCCCTTG 61.096 60.000 0.00 0.00 36.40 3.61
493 494 1.224039 GCAGCTCAGCTCATCCCTT 59.776 57.895 0.00 0.00 36.40 3.95
494 495 2.744243 GGCAGCTCAGCTCATCCCT 61.744 63.158 0.00 0.00 36.40 4.20
495 496 2.203181 GGCAGCTCAGCTCATCCC 60.203 66.667 0.00 0.00 36.40 3.85
496 497 1.227615 GAGGCAGCTCAGCTCATCC 60.228 63.158 0.00 0.00 36.40 3.51
497 498 1.227615 GGAGGCAGCTCAGCTCATC 60.228 63.158 0.00 0.00 36.40 2.92
498 499 2.744243 GGGAGGCAGCTCAGCTCAT 61.744 63.158 0.00 0.00 36.40 2.90
499 500 3.397439 GGGAGGCAGCTCAGCTCA 61.397 66.667 0.00 0.00 36.40 4.26
500 501 3.082701 AGGGAGGCAGCTCAGCTC 61.083 66.667 0.00 0.00 36.40 4.09
501 502 3.082701 GAGGGAGGCAGCTCAGCT 61.083 66.667 0.00 0.00 40.77 4.24
502 503 4.527583 CGAGGGAGGCAGCTCAGC 62.528 72.222 0.00 0.00 0.00 4.26
503 504 3.847602 CCGAGGGAGGCAGCTCAG 61.848 72.222 0.00 0.00 0.00 3.35
604 605 5.592282 TGACAACTGACAACCATATGTGTTT 59.408 36.000 1.24 0.00 32.57 2.83
640 734 2.351544 GGATTCGTGAGCGGGTAGATAC 60.352 54.545 0.00 0.00 38.89 2.24
659 756 3.525619 CAAGGAATCGTCGTTGGGA 57.474 52.632 0.00 0.00 43.05 4.37
663 760 1.289109 CGGCACAAGGAATCGTCGTT 61.289 55.000 0.00 0.00 32.07 3.85
787 884 2.656069 GGCTCTCCCGTAGTTGGCA 61.656 63.158 0.00 0.00 0.00 4.92
862 960 2.124695 GGGATTGGCACGGGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
903 1002 2.890814 CTCGGGGGTGGTTAGATAGAT 58.109 52.381 0.00 0.00 0.00 1.98
904 1003 1.756690 GCTCGGGGGTGGTTAGATAGA 60.757 57.143 0.00 0.00 0.00 1.98
905 1004 0.680061 GCTCGGGGGTGGTTAGATAG 59.320 60.000 0.00 0.00 0.00 2.08
906 1005 0.263765 AGCTCGGGGGTGGTTAGATA 59.736 55.000 0.00 0.00 0.00 1.98
1247 1348 6.791299 CAGCAGAAGATAAGTATACGACGTAC 59.209 42.308 10.41 0.73 0.00 3.67
1251 1352 5.764131 AGCAGCAGAAGATAAGTATACGAC 58.236 41.667 0.00 0.00 0.00 4.34
1294 1400 2.162608 CACAGGTCTCGTCTTCCTACAG 59.837 54.545 0.00 0.00 0.00 2.74
1297 1403 1.174783 GCACAGGTCTCGTCTTCCTA 58.825 55.000 0.00 0.00 0.00 2.94
1422 1538 2.362397 GAGCGAGACAATGATGGGAGTA 59.638 50.000 0.00 0.00 0.00 2.59
1685 1810 0.955428 TTCCACGATGTTGAGCTGCC 60.955 55.000 0.00 0.00 0.00 4.85
1701 1826 1.840635 AGGTACTGCATCTTCCCTTCC 59.159 52.381 0.00 0.00 37.18 3.46
1767 1892 1.301716 GCCACATGACACCGTGACT 60.302 57.895 5.28 0.00 35.02 3.41
2207 2332 6.867550 TGTATCTCCTAACAATCAGACACAG 58.132 40.000 0.00 0.00 0.00 3.66
2309 2434 5.868257 TCTGTGTTAATTTTAGCATCGCTG 58.132 37.500 0.00 0.00 40.10 5.18
2540 2680 7.020010 GCGAATGAGAAATAAATGGCTCATAG 58.980 38.462 0.00 0.00 44.75 2.23
2964 3114 3.760684 CCCAGTAGTTACTTCCAGTACGT 59.239 47.826 0.00 0.00 33.46 3.57
3114 3264 3.493503 CGTTGCCGATTCCCTAGAAATAC 59.506 47.826 0.00 0.00 35.09 1.89
3252 3402 4.404640 TCTCCTTGTCGAGAACCTTAAGA 58.595 43.478 3.36 0.00 35.95 2.10
3305 3455 1.483004 TCAGACGTTCCACCAAGTGAA 59.517 47.619 0.00 0.00 35.23 3.18
3417 3567 3.782893 CGATCGGTTACACTAACTCGAAC 59.217 47.826 7.38 6.55 41.24 3.95
3427 3577 5.466819 TGGATAATCATCGATCGGTTACAC 58.533 41.667 16.41 7.12 31.33 2.90
3429 3579 5.749109 GGATGGATAATCATCGATCGGTTAC 59.251 44.000 16.41 0.00 43.61 2.50
3597 3751 3.129262 TCATGGAGGTAGGGAATGTGA 57.871 47.619 0.00 0.00 0.00 3.58
3705 3860 4.339814 TGGTTTAATCCTGAAAACGTTGCT 59.660 37.500 0.00 0.00 36.63 3.91
3713 3868 4.457603 CACATCGGTGGTTTAATCCTGAAA 59.542 41.667 0.00 0.00 41.45 2.69
3743 3898 0.687354 ACTGACCTGCATCGTCCTTT 59.313 50.000 10.62 0.00 0.00 3.11
3769 3924 1.216990 GGGGATCTTGTGGAGATGGT 58.783 55.000 0.00 0.00 45.17 3.55
3771 3926 1.123077 TCGGGGATCTTGTGGAGATG 58.877 55.000 0.00 0.00 45.17 2.90
3790 3945 1.442769 ACGAGCAATGCAGATTTCGT 58.557 45.000 12.57 12.57 32.60 3.85
3791 3946 2.604914 ACTACGAGCAATGCAGATTTCG 59.395 45.455 8.35 10.16 31.07 3.46
3792 3947 3.242543 CCACTACGAGCAATGCAGATTTC 60.243 47.826 8.35 0.00 0.00 2.17
3793 3948 2.679837 CCACTACGAGCAATGCAGATTT 59.320 45.455 8.35 0.00 0.00 2.17
3795 3950 1.208052 ACCACTACGAGCAATGCAGAT 59.792 47.619 8.35 0.00 0.00 2.90
3812 3968 2.356535 GGAGTCCGGTTAGTCTCTACCA 60.357 54.545 0.00 0.00 33.94 3.25
3814 3970 2.944349 CAGGAGTCCGGTTAGTCTCTAC 59.056 54.545 2.76 0.00 0.00 2.59
3815 3971 2.842496 TCAGGAGTCCGGTTAGTCTCTA 59.158 50.000 9.29 0.00 0.00 2.43
3816 3972 1.634459 TCAGGAGTCCGGTTAGTCTCT 59.366 52.381 9.29 0.00 0.00 3.10
3817 3973 2.125773 TCAGGAGTCCGGTTAGTCTC 57.874 55.000 9.29 3.30 0.00 3.36
3818 3974 2.657143 GATCAGGAGTCCGGTTAGTCT 58.343 52.381 9.29 0.00 0.00 3.24
3828 3984 3.134442 AGAAATCTGCAGGATCAGGAGTC 59.866 47.826 15.13 0.00 34.91 3.36
3829 3985 3.113824 AGAAATCTGCAGGATCAGGAGT 58.886 45.455 15.13 0.00 34.91 3.85
3833 3989 3.377485 CACCAAGAAATCTGCAGGATCAG 59.623 47.826 15.13 6.80 32.76 2.90
3834 3990 3.349927 CACCAAGAAATCTGCAGGATCA 58.650 45.455 15.13 0.00 32.76 2.92
3836 3992 2.309755 TCCACCAAGAAATCTGCAGGAT 59.690 45.455 15.13 3.26 35.97 3.24
3838 3994 1.815003 GTCCACCAAGAAATCTGCAGG 59.185 52.381 15.13 0.00 0.00 4.85
3894 4050 0.593128 GCAGGCACAAGAACGTTCAT 59.407 50.000 28.78 15.87 0.00 2.57
4016 4173 0.917939 CACGTATACATGCGTTGCGA 59.082 50.000 2.47 0.00 46.62 5.10
4035 4192 1.082117 CACGAACATAGACACCGGGC 61.082 60.000 6.32 0.00 0.00 6.13
4036 4193 0.528924 TCACGAACATAGACACCGGG 59.471 55.000 6.32 0.00 0.00 5.73
4037 4194 2.159296 TCATCACGAACATAGACACCGG 60.159 50.000 0.00 0.00 0.00 5.28
4043 4214 6.162777 TGTGTTTCATCATCACGAACATAGA 58.837 36.000 0.00 0.00 33.39 1.98
4058 4229 3.496331 CTGGGTAAGGGTTGTGTTTCAT 58.504 45.455 0.00 0.00 0.00 2.57
4072 4243 1.368203 TCATCCCTTCTCCCTGGGTAA 59.632 52.381 13.56 7.80 43.74 2.85
4083 4254 5.772169 CCTCCCTTCATTTATTCATCCCTTC 59.228 44.000 0.00 0.00 0.00 3.46
4084 4255 5.436374 TCCTCCCTTCATTTATTCATCCCTT 59.564 40.000 0.00 0.00 0.00 3.95
4158 4330 6.183347 CCCATTGGATTTCAGATATCCCTAC 58.817 44.000 15.30 0.00 40.74 3.18
4207 4379 9.099454 CTCTTAGCGTATTGTTTTCCTATTCTT 57.901 33.333 0.00 0.00 0.00 2.52
4253 4425 1.767759 CACTATTTCAAGCCCCTGGG 58.232 55.000 5.50 5.50 38.57 4.45
4254 4426 1.106285 GCACTATTTCAAGCCCCTGG 58.894 55.000 0.00 0.00 0.00 4.45
4255 4427 1.106285 GGCACTATTTCAAGCCCCTG 58.894 55.000 0.00 0.00 41.25 4.45
4256 4428 0.704076 TGGCACTATTTCAAGCCCCT 59.296 50.000 0.00 0.00 46.45 4.79
4257 4429 0.817654 GTGGCACTATTTCAAGCCCC 59.182 55.000 11.13 0.00 46.45 5.80
4258 4430 0.817654 GGTGGCACTATTTCAAGCCC 59.182 55.000 18.45 0.00 46.45 5.19
4260 4432 1.474077 CCAGGTGGCACTATTTCAAGC 59.526 52.381 18.45 0.00 0.00 4.01
4261 4433 2.094675 CCCAGGTGGCACTATTTCAAG 58.905 52.381 18.45 0.00 0.00 3.02
4262 4434 2.214376 CCCAGGTGGCACTATTTCAA 57.786 50.000 18.45 0.00 0.00 2.69
4263 4435 3.976704 CCCAGGTGGCACTATTTCA 57.023 52.632 18.45 0.00 0.00 2.69
4273 4445 2.201210 AAAAGTGGGCCCAGGTGG 59.799 61.111 29.55 0.00 37.09 4.61
4274 4446 2.209315 CCAAAAGTGGGCCCAGGTG 61.209 63.158 29.55 20.02 41.77 4.00
4275 4447 2.201210 CCAAAAGTGGGCCCAGGT 59.799 61.111 29.55 13.83 41.77 4.00
4276 4448 3.313524 GCCAAAAGTGGGCCCAGG 61.314 66.667 29.55 24.12 46.09 4.45
4311 4484 1.887242 GCACGCCGAATATGAGCCA 60.887 57.895 0.00 0.00 0.00 4.75
4361 4534 7.572759 TGAATTTCTTTGACGAACTATGTGAC 58.427 34.615 0.00 0.00 0.00 3.67
4414 4590 9.301153 ACATGAGTTTTTATTTGTTGAACTGTC 57.699 29.630 0.00 0.00 31.24 3.51
4439 4622 1.419374 AGCTCGACGTGTGATGAAAC 58.581 50.000 0.00 0.00 0.00 2.78
4484 4668 3.181472 TGCAACACGATCTGATAGAGCAT 60.181 43.478 4.72 0.00 27.99 3.79
4490 4674 4.456280 AGAACTGCAACACGATCTGATA 57.544 40.909 0.00 0.00 0.00 2.15
4492 4676 2.802247 CAAGAACTGCAACACGATCTGA 59.198 45.455 0.00 0.00 0.00 3.27
4525 4709 0.736053 GCGTCAGAAGATCCGAGACT 59.264 55.000 0.00 0.00 0.00 3.24
4537 4721 2.483714 GCCTTCCTCAATATGCGTCAGA 60.484 50.000 0.00 0.00 0.00 3.27
4604 4788 5.116084 ACACTGAACCATATTACAGGCAT 57.884 39.130 0.00 0.00 35.08 4.40
4645 4829 3.109044 ACATGATCATTGAGAGCGAGG 57.891 47.619 5.16 0.00 34.70 4.63
4675 4867 1.956477 GAGGTCATGGCTTGTTGTGTT 59.044 47.619 0.00 0.00 0.00 3.32
4686 4878 2.512692 TCAAACATGGGAGGTCATGG 57.487 50.000 9.25 0.00 46.33 3.66
4733 4925 3.902881 ATCTCGATTTGCTCTTGTCCT 57.097 42.857 0.00 0.00 0.00 3.85
4740 4932 2.031437 GTGCTCCAATCTCGATTTGCTC 59.969 50.000 3.36 4.33 0.00 4.26
4774 4966 1.806542 GCTTGCAAGAAGGATGTCGAA 59.193 47.619 30.39 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.