Multiple sequence alignment - TraesCS4B01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G287800 chr4B 100.000 6782 0 0 1 6782 571474792 571468011 0.000000e+00 12525
1 TraesCS4B01G287800 chr4D 90.922 2842 157 56 5 2811 457507139 457504364 0.000000e+00 3725
2 TraesCS4B01G287800 chr4D 92.012 1039 56 9 3407 4441 457503671 457502656 0.000000e+00 1434
3 TraesCS4B01G287800 chr4D 93.639 959 19 8 5378 6322 457501637 457500707 0.000000e+00 1395
4 TraesCS4B01G287800 chr4D 93.897 934 38 5 4431 5353 457502626 457501701 0.000000e+00 1391
5 TraesCS4B01G287800 chr4D 92.965 597 29 4 2812 3408 457504285 457503702 0.000000e+00 857
6 TraesCS4B01G287800 chr4D 96.591 352 11 1 5971 6322 457498147 457497797 3.530000e-162 582
7 TraesCS4B01G287800 chr4D 85.503 338 27 9 6317 6647 457500654 457500332 3.920000e-87 333
8 TraesCS4B01G287800 chr4A 89.902 2456 156 39 5 2427 11182281 11184677 0.000000e+00 3077
9 TraesCS4B01G287800 chr4A 90.800 2250 102 38 4433 6616 11186772 11188982 0.000000e+00 2911
10 TraesCS4B01G287800 chr4A 91.731 1040 49 12 3407 4430 11185704 11186722 0.000000e+00 1410
11 TraesCS4B01G287800 chr4A 91.055 436 30 3 2975 3409 11185247 11185674 1.270000e-161 580
12 TraesCS4B01G287800 chr4A 94.624 279 9 3 2539 2811 11184783 11185061 1.750000e-115 427
13 TraesCS4B01G287800 chr1B 93.452 168 9 2 3816 3983 6714117 6713952 1.460000e-61 248
14 TraesCS4B01G287800 chr1B 93.452 168 9 2 3816 3983 6718503 6718338 1.460000e-61 248
15 TraesCS4B01G287800 chr1B 92.857 168 10 2 3816 3983 6705284 6705119 6.800000e-60 243
16 TraesCS4B01G287800 chr1B 92.857 168 10 2 3818 3985 631855197 631855362 6.800000e-60 243
17 TraesCS4B01G287800 chr1B 92.262 168 11 2 3816 3983 6709701 6709536 3.160000e-58 237
18 TraesCS4B01G287800 chr1B 91.667 168 12 2 3816 3983 6701107 6700942 1.470000e-56 231
19 TraesCS4B01G287800 chr1B 91.346 104 8 1 6670 6772 222990447 222990344 2.550000e-29 141
20 TraesCS4B01G287800 chr5B 92.857 168 10 2 3818 3985 537616760 537616925 6.800000e-60 243
21 TraesCS4B01G287800 chr5B 91.262 103 8 1 6668 6769 13077920 13078022 9.170000e-29 139
22 TraesCS4B01G287800 chr5D 96.000 100 3 1 6670 6769 277075765 277075863 1.960000e-35 161
23 TraesCS4B01G287800 chr5D 88.991 109 9 3 6663 6769 353694779 353694886 1.530000e-26 132
24 TraesCS4B01G287800 chr3D 94.231 104 5 1 6666 6769 573092697 573092799 2.530000e-34 158
25 TraesCS4B01G287800 chr3B 93.204 103 7 0 6670 6772 18449232 18449130 1.180000e-32 152
26 TraesCS4B01G287800 chr3B 93.069 101 6 1 6668 6767 570956917 570956817 5.480000e-31 147
27 TraesCS4B01G287800 chr3B 92.079 101 7 1 6670 6769 734539166 734539266 2.550000e-29 141
28 TraesCS4B01G287800 chr7B 91.919 99 7 1 6672 6769 519904763 519904861 3.300000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G287800 chr4B 571468011 571474792 6781 True 12525.000000 12525 100.000000 1 6782 1 chr4B.!!$R1 6781
1 TraesCS4B01G287800 chr4D 457497797 457507139 9342 True 1388.142857 3725 92.218429 5 6647 7 chr4D.!!$R1 6642
2 TraesCS4B01G287800 chr4A 11182281 11188982 6701 False 1681.000000 3077 91.622400 5 6616 5 chr4A.!!$F1 6611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.036732 AGCTCAAGGAATCGCCAACA 59.963 50.000 0.00 0.0 40.02 3.33 F
769 793 0.109532 TCCATCGCTCCCAACACAAA 59.890 50.000 0.00 0.0 0.00 2.83 F
784 808 1.076339 CAAACCCACACCACCACCT 60.076 57.895 0.00 0.0 0.00 4.00 F
1228 1281 1.078426 ATGCAACCCGAGTACAGCC 60.078 57.895 0.00 0.0 0.00 4.85 F
2885 3061 0.399949 AGGGGAACAGACCTGTCACA 60.400 55.000 2.84 0.0 44.13 3.58 F
3724 3934 0.035739 CTGGCCTTGGCTTTGCATTT 59.964 50.000 11.71 0.0 0.00 2.32 F
3725 3935 0.473326 TGGCCTTGGCTTTGCATTTT 59.527 45.000 11.71 0.0 0.00 1.82 F
4856 5164 0.548510 CCTGGTTCCCCTTCATCCTC 59.451 60.000 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 1738 0.944311 CCACAGCCACACGTGTACTC 60.944 60.0 22.90 12.97 0.00 2.59 R
2180 2247 0.253044 TCCAGCATGTAAGGAGTGCC 59.747 55.0 0.00 0.00 39.62 5.01 R
2326 2393 0.795735 CGACGAGCGGTCAATTACGT 60.796 55.0 15.89 5.92 46.42 3.57 R
2907 3083 0.590195 CAGAGCTGCAACTGTTCCAC 59.410 55.0 15.24 0.00 0.00 4.02 R
4856 5164 0.100682 CCATCCAGTCGGTGTCGTAG 59.899 60.0 0.00 0.00 37.69 3.51 R
5221 5532 0.552363 TGCTGGATGTACCCATGCAT 59.448 50.0 0.00 0.00 46.59 3.96 R
5367 5684 0.880278 GCGGTGCAACTTGTGAGAGA 60.880 55.0 0.00 0.00 36.74 3.10 R
6409 6890 0.035152 TGGAAATCAGCCACGATGCT 60.035 50.0 0.00 0.00 44.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.024176 TAGCTCAAGGAATCGCCAAC 57.976 50.000 0.00 0.00 40.02 3.77
22 23 0.036732 AGCTCAAGGAATCGCCAACA 59.963 50.000 0.00 0.00 40.02 3.33
75 80 4.636249 AGACGAAGAAGAACTGCAATTCT 58.364 39.130 4.20 4.20 40.78 2.40
106 111 2.154462 CGGAATGGAGGGATATGTTGC 58.846 52.381 0.00 0.00 0.00 4.17
120 125 0.390998 TGTTGCGCGATGAGATTGGA 60.391 50.000 12.10 0.00 0.00 3.53
157 162 2.198827 TGTTCGGATGAGGCAACAAT 57.801 45.000 0.00 0.00 41.41 2.71
206 211 1.000270 ATGGGCGTGTAATGGGCAA 60.000 52.632 0.00 0.00 0.00 4.52
484 491 7.281774 ACAATAGATAAACCAAGTGAGCATCTG 59.718 37.037 0.00 0.00 34.92 2.90
522 529 5.316167 TCTTATCAAGAAAGGTGTGCACAT 58.684 37.500 24.69 6.59 33.83 3.21
605 614 9.406113 ACTTTAGAACCTAGTACTACCATACTG 57.594 37.037 0.00 0.00 36.09 2.74
609 618 3.881688 ACCTAGTACTACCATACTGCACG 59.118 47.826 0.00 0.00 36.09 5.34
743 767 0.975556 CTTTAAATGCCCCGCCCCTT 60.976 55.000 0.00 0.00 0.00 3.95
763 787 3.089874 CCCCTCCATCGCTCCCAA 61.090 66.667 0.00 0.00 0.00 4.12
764 788 2.190578 CCCTCCATCGCTCCCAAC 59.809 66.667 0.00 0.00 0.00 3.77
765 789 2.669133 CCCTCCATCGCTCCCAACA 61.669 63.158 0.00 0.00 0.00 3.33
766 790 1.450312 CCTCCATCGCTCCCAACAC 60.450 63.158 0.00 0.00 0.00 3.32
767 791 1.296392 CTCCATCGCTCCCAACACA 59.704 57.895 0.00 0.00 0.00 3.72
768 792 0.321564 CTCCATCGCTCCCAACACAA 60.322 55.000 0.00 0.00 0.00 3.33
769 793 0.109532 TCCATCGCTCCCAACACAAA 59.890 50.000 0.00 0.00 0.00 2.83
784 808 1.076339 CAAACCCACACCACCACCT 60.076 57.895 0.00 0.00 0.00 4.00
785 809 1.106944 CAAACCCACACCACCACCTC 61.107 60.000 0.00 0.00 0.00 3.85
786 810 1.286305 AAACCCACACCACCACCTCT 61.286 55.000 0.00 0.00 0.00 3.69
787 811 1.705997 AACCCACACCACCACCTCTC 61.706 60.000 0.00 0.00 0.00 3.20
788 812 2.750350 CCACACCACCACCTCTCC 59.250 66.667 0.00 0.00 0.00 3.71
789 813 1.843376 CCACACCACCACCTCTCCT 60.843 63.158 0.00 0.00 0.00 3.69
826 866 1.190643 CTTCCCTCACACCTCTCTCC 58.809 60.000 0.00 0.00 0.00 3.71
828 868 1.687493 CCCTCACACCTCTCTCCCC 60.687 68.421 0.00 0.00 0.00 4.81
855 895 1.139947 CTTTCCGCTCTCGTCTCCC 59.860 63.158 0.00 0.00 0.00 4.30
981 1034 3.284336 CGAGGTGGTGATCGTCCA 58.716 61.111 5.49 5.49 34.30 4.02
1228 1281 1.078426 ATGCAACCCGAGTACAGCC 60.078 57.895 0.00 0.00 0.00 4.85
1405 1458 4.363991 AATCTGCAAAGGTCTGAAGAGT 57.636 40.909 0.00 0.00 34.33 3.24
1568 1622 4.398549 TTTGAAACGGTAGATTCAAGCG 57.601 40.909 6.58 0.00 45.47 4.68
1584 1643 5.756950 TCAAGCGTAACAGTTTCTATTCG 57.243 39.130 0.00 0.00 0.00 3.34
1630 1689 4.273005 TGTCAAGCTTGTTCGTTTCTTC 57.727 40.909 25.19 5.89 0.00 2.87
1666 1725 5.994668 TGTTCTTTTTCCAACAGCTTTTTGT 59.005 32.000 4.50 0.00 0.00 2.83
1679 1738 5.082059 CAGCTTTTTGTCAGCGTATTAGTG 58.918 41.667 0.00 0.00 42.55 2.74
1713 1772 3.243704 GGCTGTGGCTAGAAGTCTATCTG 60.244 52.174 0.00 0.00 38.73 2.90
1901 1965 2.936919 AGCCTCAATTCTGTGTGTGA 57.063 45.000 0.00 0.00 0.00 3.58
1984 2048 1.369091 CCAAGCCATACGGTGCACTC 61.369 60.000 17.98 6.02 33.28 3.51
2013 2077 6.653020 ACAAGATATACACACCATCACACAT 58.347 36.000 0.00 0.00 0.00 3.21
2057 2124 7.121759 TGAACTGTACTCCTTTAATACGTAGCT 59.878 37.037 0.08 0.00 0.00 3.32
2058 2125 8.511604 AACTGTACTCCTTTAATACGTAGCTA 57.488 34.615 0.08 0.00 0.00 3.32
2059 2126 8.688747 ACTGTACTCCTTTAATACGTAGCTAT 57.311 34.615 0.08 0.00 0.00 2.97
2060 2127 9.784531 ACTGTACTCCTTTAATACGTAGCTATA 57.215 33.333 0.08 0.00 0.00 1.31
2117 2184 8.973378 GCAAGCACTAATGAGTAGAGTAATTAG 58.027 37.037 0.00 0.00 38.18 1.73
2146 2213 5.404096 CAACATCATGCTACATGCTTTTCA 58.596 37.500 2.65 0.00 43.37 2.69
2151 2218 4.945543 TCATGCTACATGCTTTTCATCTGT 59.054 37.500 2.65 0.00 43.37 3.41
2160 2227 2.975851 GCTTTTCATCTGTTCAAGCACG 59.024 45.455 0.00 0.00 39.76 5.34
2175 2242 4.075910 ACGCGCGTTGCTGTCATG 62.076 61.111 32.73 0.00 43.27 3.07
2180 2247 1.515519 GCGTTGCTGTCATGCCATG 60.516 57.895 0.00 0.00 0.00 3.66
2205 2272 2.666317 TCCTTACATGCTGGAGATCGA 58.334 47.619 0.00 0.00 0.00 3.59
2219 2286 4.770531 TGGAGATCGAAACGGGATATGTAT 59.229 41.667 0.00 0.00 0.00 2.29
2326 2393 3.181454 GGCCTGATAGGGAAATCTCGAAA 60.181 47.826 0.00 0.00 35.37 3.46
2328 2395 4.051922 CCTGATAGGGAAATCTCGAAACG 58.948 47.826 0.00 0.00 0.00 3.60
2362 2429 2.740826 GGCGCCTCAACGTTGCTA 60.741 61.111 23.47 6.46 34.88 3.49
2409 2478 3.991367 ACGGTCTTAGTTTCAGTTCAGG 58.009 45.455 0.00 0.00 0.00 3.86
2427 2496 2.691011 CAGGCCTGAGAAGGAGTACTAC 59.309 54.545 29.88 0.00 0.00 2.73
2430 2499 3.884693 GGCCTGAGAAGGAGTACTACTAC 59.115 52.174 8.40 4.09 0.00 2.73
2431 2500 4.385532 GGCCTGAGAAGGAGTACTACTACT 60.386 50.000 8.40 0.00 42.40 2.57
2433 2502 5.759763 GCCTGAGAAGGAGTACTACTACTAC 59.240 48.000 8.40 1.57 38.80 2.73
2642 2733 2.139323 TAGCCTTCTCGAGCCAAGTA 57.861 50.000 7.81 0.00 0.00 2.24
2715 2812 7.645058 ATGTATAAATACAGCTTGGCAAGTT 57.355 32.000 26.71 19.60 45.46 2.66
2875 3051 2.158755 GGTGTATGGATCAGGGGAACAG 60.159 54.545 0.00 0.00 0.00 3.16
2885 3061 0.399949 AGGGGAACAGACCTGTCACA 60.400 55.000 2.84 0.00 44.13 3.58
2887 3063 1.594331 GGGAACAGACCTGTCACAAC 58.406 55.000 2.84 0.00 44.13 3.32
2888 3064 1.134220 GGGAACAGACCTGTCACAACA 60.134 52.381 2.84 0.00 44.13 3.33
2889 3065 2.639065 GGAACAGACCTGTCACAACAA 58.361 47.619 2.84 0.00 44.13 2.83
2891 3067 4.385825 GGAACAGACCTGTCACAACAATA 58.614 43.478 2.84 0.00 44.13 1.90
2892 3068 5.003804 GGAACAGACCTGTCACAACAATAT 58.996 41.667 2.84 0.00 44.13 1.28
2907 3083 6.636447 CACAACAATATACAGTGTTTGTGTGG 59.364 38.462 20.60 13.24 39.84 4.17
2918 3094 2.230025 TGTTTGTGTGGTGGAACAGTTG 59.770 45.455 0.00 0.00 41.80 3.16
2943 3119 2.106511 CTCTGGGGTGAAAGAGTTCCAA 59.893 50.000 0.00 0.00 36.08 3.53
2961 3137 6.761242 AGTTCCAAGTTTTCTAAACCATTTGC 59.239 34.615 0.00 0.00 0.00 3.68
2963 3139 7.589958 TCCAAGTTTTCTAAACCATTTGCTA 57.410 32.000 0.00 0.00 0.00 3.49
2983 3159 6.324819 TGCTATTGCTTGATAACAAAAGAGC 58.675 36.000 8.86 8.86 39.46 4.09
3002 3178 8.451908 AAAGAGCAGTGTAAAATTCAGTAACT 57.548 30.769 0.00 0.00 0.00 2.24
3037 3213 3.755378 TGTTGTTTGCTTTTTGTGCCAAT 59.245 34.783 0.00 0.00 0.00 3.16
3048 3224 4.533919 TTTGTGCCAATAAACTGATGGG 57.466 40.909 0.00 0.00 34.71 4.00
3116 3292 6.437477 TGTTACTGTCCACTGACTATCTGAAT 59.563 38.462 0.00 0.00 42.28 2.57
3124 3300 5.392380 CCACTGACTATCTGAATTTTGCCAC 60.392 44.000 0.00 0.00 0.00 5.01
3208 3384 5.636903 ATTGCTGGATTAGTGGTGAGTAT 57.363 39.130 0.00 0.00 0.00 2.12
3304 3480 8.167605 TCATAGTACTGGTGCTAGATACTTTC 57.832 38.462 5.39 0.00 31.54 2.62
3312 3488 5.127194 TGGTGCTAGATACTTTCACACCTAG 59.873 44.000 10.31 0.00 41.79 3.02
3320 3496 3.805207 ACTTTCACACCTAGTTCACACC 58.195 45.455 0.00 0.00 0.00 4.16
3321 3497 3.199071 ACTTTCACACCTAGTTCACACCA 59.801 43.478 0.00 0.00 0.00 4.17
3335 3511 9.214957 CTAGTTCACACCAAACTGTAAATCATA 57.785 33.333 0.00 0.00 37.52 2.15
3349 3525 8.918116 ACTGTAAATCATATCTGAAGCACTCTA 58.082 33.333 0.00 0.00 34.37 2.43
3573 3781 6.037172 CCTTGGTTATCTTCTTACGGTTCATG 59.963 42.308 0.00 0.00 0.00 3.07
3722 3932 2.288025 CCTGGCCTTGGCTTTGCAT 61.288 57.895 11.71 0.00 0.00 3.96
3723 3933 1.675219 CTGGCCTTGGCTTTGCATT 59.325 52.632 11.71 0.00 0.00 3.56
3724 3934 0.035739 CTGGCCTTGGCTTTGCATTT 59.964 50.000 11.71 0.00 0.00 2.32
3725 3935 0.473326 TGGCCTTGGCTTTGCATTTT 59.527 45.000 11.71 0.00 0.00 1.82
3726 3936 1.159285 GGCCTTGGCTTTGCATTTTC 58.841 50.000 11.71 0.00 0.00 2.29
3727 3937 1.159285 GCCTTGGCTTTGCATTTTCC 58.841 50.000 4.11 0.00 0.00 3.13
3771 3981 2.608752 GCAAGCTGGTCTGACATTTTGG 60.609 50.000 10.38 0.00 0.00 3.28
3882 4092 3.443681 ACACTGTGCAAGTAAGTGCTTTT 59.556 39.130 15.98 0.00 44.14 2.27
3886 4096 5.765182 ACTGTGCAAGTAAGTGCTTTTAGAT 59.235 36.000 0.00 0.00 45.17 1.98
3887 4097 6.000891 TGTGCAAGTAAGTGCTTTTAGATG 57.999 37.500 0.00 0.00 45.17 2.90
3888 4098 5.762711 TGTGCAAGTAAGTGCTTTTAGATGA 59.237 36.000 0.00 0.00 45.17 2.92
3889 4099 6.073058 TGTGCAAGTAAGTGCTTTTAGATGAG 60.073 38.462 0.00 0.00 45.17 2.90
3890 4100 5.997746 TGCAAGTAAGTGCTTTTAGATGAGT 59.002 36.000 0.00 0.00 45.17 3.41
3891 4101 7.117812 GTGCAAGTAAGTGCTTTTAGATGAGTA 59.882 37.037 0.00 0.00 45.17 2.59
3892 4102 7.117812 TGCAAGTAAGTGCTTTTAGATGAGTAC 59.882 37.037 0.00 0.00 45.17 2.73
3893 4103 7.332182 GCAAGTAAGTGCTTTTAGATGAGTACT 59.668 37.037 0.00 0.00 41.51 2.73
3894 4104 8.651588 CAAGTAAGTGCTTTTAGATGAGTACTG 58.348 37.037 0.00 0.00 38.56 2.74
3895 4105 7.897864 AGTAAGTGCTTTTAGATGAGTACTGT 58.102 34.615 0.00 0.00 38.56 3.55
3896 4106 9.021807 AGTAAGTGCTTTTAGATGAGTACTGTA 57.978 33.333 0.00 0.00 38.56 2.74
3897 4107 9.291664 GTAAGTGCTTTTAGATGAGTACTGTAG 57.708 37.037 0.00 0.00 38.56 2.74
3898 4108 7.469537 AGTGCTTTTAGATGAGTACTGTAGT 57.530 36.000 0.00 0.00 37.43 2.73
3899 4109 8.577048 AGTGCTTTTAGATGAGTACTGTAGTA 57.423 34.615 0.00 0.00 37.43 1.82
3900 4110 8.679100 AGTGCTTTTAGATGAGTACTGTAGTAG 58.321 37.037 0.00 0.00 37.43 2.57
3957 4167 9.214953 CGCTATGACTAATTTCACTTGATTTTC 57.785 33.333 0.00 0.00 0.00 2.29
4053 4263 2.230660 GCTAGTTGGTTCAGGCAAACT 58.769 47.619 0.00 0.00 36.64 2.66
4058 4272 5.200368 AGTTGGTTCAGGCAAACTAATTG 57.800 39.130 5.21 0.00 42.21 2.32
4066 4280 4.700213 TCAGGCAAACTAATTGAACTAGCC 59.300 41.667 0.00 0.00 41.85 3.93
4067 4281 4.923415 AGGCAAACTAATTGAACTAGCCT 58.077 39.130 0.00 0.00 44.51 4.58
4083 4297 1.221840 CCTCTGCCTGTTATGCCGT 59.778 57.895 0.00 0.00 0.00 5.68
4084 4298 1.091771 CCTCTGCCTGTTATGCCGTG 61.092 60.000 0.00 0.00 0.00 4.94
4094 4308 4.175516 CTGTTATGCCGTGCAATCAAATT 58.824 39.130 2.68 0.00 43.62 1.82
4139 4353 5.895636 TTTCTTTCTGTTCAACAGCTCAA 57.104 34.783 13.15 4.78 45.54 3.02
4256 4470 6.651225 ACAAGTAAGCCAACACTTATCTTCTC 59.349 38.462 0.00 0.00 34.76 2.87
4476 4747 5.545658 TGAGCAAACTTGGATCGATAAAC 57.454 39.130 0.00 0.00 0.00 2.01
4480 4751 4.879545 GCAAACTTGGATCGATAAACCCTA 59.120 41.667 0.00 0.00 0.00 3.53
4481 4752 5.355910 GCAAACTTGGATCGATAAACCCTAA 59.644 40.000 0.00 0.00 0.00 2.69
4482 4753 6.127842 GCAAACTTGGATCGATAAACCCTAAA 60.128 38.462 0.00 0.00 0.00 1.85
4483 4754 6.997239 AACTTGGATCGATAAACCCTAAAC 57.003 37.500 0.00 0.00 0.00 2.01
4502 4773 4.357918 AACCCTGCTATGTATGACCATC 57.642 45.455 0.00 0.00 0.00 3.51
4524 4795 2.118683 CTGTGCACCATTGTTGAAACG 58.881 47.619 15.69 0.00 0.00 3.60
4621 4903 2.351544 GGAGATACCGTACAAGGCGATC 60.352 54.545 0.00 0.00 33.69 3.69
4669 4951 1.122019 AGGTTGAAGTCGAGCCCACT 61.122 55.000 0.00 0.00 0.00 4.00
4720 5002 1.000521 CTTGCCTCCTGGAATGCCA 60.001 57.895 13.51 0.00 43.47 4.92
4784 5066 4.389077 CACGATGTTTCAGGGTTTACTCTC 59.611 45.833 0.00 0.00 0.00 3.20
4790 5072 6.184789 TGTTTCAGGGTTTACTCTCAAGTTT 58.815 36.000 0.00 0.00 36.92 2.66
4804 5086 3.271729 TCAAGTTTAACACCACGCTTCA 58.728 40.909 0.00 0.00 0.00 3.02
4856 5164 0.548510 CCTGGTTCCCCTTCATCCTC 59.451 60.000 0.00 0.00 0.00 3.71
5009 5317 5.359194 TTCACTACTTCCTCCATCATTCC 57.641 43.478 0.00 0.00 0.00 3.01
5011 5319 3.133003 CACTACTTCCTCCATCATTCCGT 59.867 47.826 0.00 0.00 0.00 4.69
5014 5322 2.169352 ACTTCCTCCATCATTCCGTCTG 59.831 50.000 0.00 0.00 0.00 3.51
5020 5331 1.134280 CCATCATTCCGTCTGCTCCTT 60.134 52.381 0.00 0.00 0.00 3.36
5100 5411 2.671682 GTCCTGGGGTTCAGCTCC 59.328 66.667 0.00 0.00 42.05 4.70
5221 5532 0.904865 CTGGTGGGCTACTCAGGACA 60.905 60.000 0.00 0.00 0.00 4.02
5302 5613 1.435515 CTCTTCGCCTTCCTCGGAG 59.564 63.158 0.00 0.00 34.00 4.63
5334 5651 2.484417 CGTAAGCATCAGCATCCCTTCT 60.484 50.000 0.00 0.00 45.49 2.85
5340 5657 1.751927 CAGCATCCCTTCTGCCACC 60.752 63.158 0.00 0.00 40.56 4.61
5346 5663 1.965414 TCCCTTCTGCCACCTGATTA 58.035 50.000 0.00 0.00 0.00 1.75
5347 5664 1.839994 TCCCTTCTGCCACCTGATTAG 59.160 52.381 0.00 0.00 0.00 1.73
6149 6549 0.800300 GTTCTCTTCTCTCGGCAGCG 60.800 60.000 0.00 0.00 0.00 5.18
6202 6610 2.428187 CCGGTACACCAGGCACAA 59.572 61.111 0.00 0.00 35.14 3.33
6227 6635 2.429250 TGTTCCTTCAGTCGTTCTCACA 59.571 45.455 0.00 0.00 0.00 3.58
6342 6818 1.319614 ACGCCCAGCACAAACAGTTT 61.320 50.000 0.00 0.00 0.00 2.66
6382 6858 1.599542 GCAGACTCCTTGTGTTGACAC 59.400 52.381 7.31 7.31 46.59 3.67
6409 6890 3.003275 CAGAAACAGACTTTGCGCCTAAA 59.997 43.478 4.18 0.00 0.00 1.85
6410 6891 3.251004 AGAAACAGACTTTGCGCCTAAAG 59.749 43.478 16.26 16.26 42.09 1.85
6414 6895 1.740025 AGACTTTGCGCCTAAAGCATC 59.260 47.619 17.42 10.23 44.74 3.91
6438 6920 3.006110 TGGCTGATTTCCAGAGCTTTTTG 59.994 43.478 0.00 0.00 45.78 2.44
6453 6935 5.095490 AGCTTTTTGAACAAAACGTGAGAG 58.905 37.500 11.46 7.28 39.70 3.20
6454 6936 4.857037 GCTTTTTGAACAAAACGTGAGAGT 59.143 37.500 11.46 0.00 39.70 3.24
6456 6938 4.609691 TTTGAACAAAACGTGAGAGTCC 57.390 40.909 0.00 0.00 0.00 3.85
6457 6939 3.536956 TGAACAAAACGTGAGAGTCCT 57.463 42.857 0.00 0.00 0.00 3.85
6459 6941 3.132289 TGAACAAAACGTGAGAGTCCTCT 59.868 43.478 0.00 0.00 43.78 3.69
6462 6944 3.132289 ACAAAACGTGAGAGTCCTCTTGA 59.868 43.478 0.00 0.00 40.61 3.02
6463 6945 3.651803 AAACGTGAGAGTCCTCTTGAG 57.348 47.619 0.00 0.00 40.61 3.02
6464 6946 1.540267 ACGTGAGAGTCCTCTTGAGG 58.460 55.000 10.28 10.28 40.61 3.86
6465 6947 0.814457 CGTGAGAGTCCTCTTGAGGG 59.186 60.000 15.81 0.00 40.61 4.30
6466 6948 1.190643 GTGAGAGTCCTCTTGAGGGG 58.809 60.000 15.81 1.07 40.61 4.79
6467 6949 1.084866 TGAGAGTCCTCTTGAGGGGA 58.915 55.000 15.81 3.77 40.61 4.81
6468 6950 1.433199 TGAGAGTCCTCTTGAGGGGAA 59.567 52.381 15.81 0.00 40.61 3.97
6469 6951 2.045047 TGAGAGTCCTCTTGAGGGGAAT 59.955 50.000 15.81 5.90 40.61 3.01
6470 6952 3.111484 GAGAGTCCTCTTGAGGGGAATT 58.889 50.000 15.81 0.00 40.61 2.17
6471 6953 3.521531 GAGAGTCCTCTTGAGGGGAATTT 59.478 47.826 15.81 1.23 40.61 1.82
6502 6984 6.245408 AGGGCTTGTACATTTTTACAGATCA 58.755 36.000 0.00 0.00 33.50 2.92
6503 6985 6.719370 AGGGCTTGTACATTTTTACAGATCAA 59.281 34.615 0.00 0.00 33.50 2.57
6504 6986 7.397192 AGGGCTTGTACATTTTTACAGATCAAT 59.603 33.333 0.00 0.00 33.50 2.57
6505 6987 8.682710 GGGCTTGTACATTTTTACAGATCAATA 58.317 33.333 0.00 0.00 33.50 1.90
6506 6988 9.503427 GGCTTGTACATTTTTACAGATCAATAC 57.497 33.333 0.00 0.00 33.50 1.89
6530 7012 5.805994 CAGTAGACGGAGGAATTACAAGAAC 59.194 44.000 0.00 0.00 0.00 3.01
6583 7069 3.869246 GCCAATCTTCAATGATGCTTTGG 59.131 43.478 17.91 17.91 0.00 3.28
6625 7111 0.466124 CCTGAATTCTCCCTCCGTCC 59.534 60.000 7.05 0.00 0.00 4.79
6659 7145 6.918892 GGCACCTAATGAAAAACAGTTTTT 57.081 33.333 21.60 21.60 44.93 1.94
6679 7165 6.976934 TTTTTCAAGAGATTTAGGGCTTGT 57.023 33.333 0.00 0.00 38.95 3.16
6683 7169 4.766891 TCAAGAGATTTAGGGCTTGTTTGG 59.233 41.667 0.00 0.00 38.95 3.28
6686 7172 3.431415 AGATTTAGGGCTTGTTTGGGAC 58.569 45.455 0.00 0.00 0.00 4.46
6687 7173 3.076032 AGATTTAGGGCTTGTTTGGGACT 59.924 43.478 0.00 0.00 0.00 3.85
6688 7174 2.286365 TTAGGGCTTGTTTGGGACTG 57.714 50.000 0.00 0.00 0.00 3.51
6689 7175 0.251165 TAGGGCTTGTTTGGGACTGC 60.251 55.000 0.00 0.00 0.00 4.40
6691 7177 1.527433 GGGCTTGTTTGGGACTGCTC 61.527 60.000 0.00 0.00 0.00 4.26
6692 7178 1.527433 GGCTTGTTTGGGACTGCTCC 61.527 60.000 0.00 0.00 35.50 4.70
6693 7179 1.856265 GCTTGTTTGGGACTGCTCCG 61.856 60.000 0.00 0.00 37.46 4.63
6694 7180 1.856265 CTTGTTTGGGACTGCTCCGC 61.856 60.000 0.00 0.00 37.46 5.54
6696 7182 1.600916 GTTTGGGACTGCTCCGCTT 60.601 57.895 0.00 0.00 37.46 4.68
6699 7185 2.435059 GGGACTGCTCCGCTTCAC 60.435 66.667 0.00 0.00 37.46 3.18
6701 7187 1.605058 GGGACTGCTCCGCTTCACTA 61.605 60.000 0.00 0.00 37.46 2.74
6702 7188 0.246635 GGACTGCTCCGCTTCACTAA 59.753 55.000 0.00 0.00 0.00 2.24
6703 7189 1.337823 GGACTGCTCCGCTTCACTAAA 60.338 52.381 0.00 0.00 0.00 1.85
6705 7191 3.003480 GACTGCTCCGCTTCACTAAAAT 58.997 45.455 0.00 0.00 0.00 1.82
6706 7192 3.003480 ACTGCTCCGCTTCACTAAAATC 58.997 45.455 0.00 0.00 0.00 2.17
6708 7194 3.002791 TGCTCCGCTTCACTAAAATCAG 58.997 45.455 0.00 0.00 0.00 2.90
6709 7195 3.003480 GCTCCGCTTCACTAAAATCAGT 58.997 45.455 0.00 0.00 0.00 3.41
6710 7196 3.437049 GCTCCGCTTCACTAAAATCAGTT 59.563 43.478 0.00 0.00 0.00 3.16
6712 7198 5.607119 TCCGCTTCACTAAAATCAGTTTC 57.393 39.130 0.00 0.00 0.00 2.78
6713 7199 5.060506 TCCGCTTCACTAAAATCAGTTTCA 58.939 37.500 0.00 0.00 0.00 2.69
6716 7202 6.074005 CGCTTCACTAAAATCAGTTTCACTC 58.926 40.000 0.00 0.00 0.00 3.51
6717 7203 6.374578 GCTTCACTAAAATCAGTTTCACTCC 58.625 40.000 0.00 0.00 0.00 3.85
6718 7204 6.017109 GCTTCACTAAAATCAGTTTCACTCCA 60.017 38.462 0.00 0.00 0.00 3.86
6720 7206 5.763204 TCACTAAAATCAGTTTCACTCCACC 59.237 40.000 0.00 0.00 0.00 4.61
6721 7207 5.530915 CACTAAAATCAGTTTCACTCCACCA 59.469 40.000 0.00 0.00 0.00 4.17
6723 7209 5.930837 AAAATCAGTTTCACTCCACCAAA 57.069 34.783 0.00 0.00 0.00 3.28
6724 7210 6.484364 AAAATCAGTTTCACTCCACCAAAT 57.516 33.333 0.00 0.00 0.00 2.32
6725 7211 6.484364 AAATCAGTTTCACTCCACCAAATT 57.516 33.333 0.00 0.00 0.00 1.82
6726 7212 5.712152 ATCAGTTTCACTCCACCAAATTC 57.288 39.130 0.00 0.00 0.00 2.17
6728 7214 5.139727 TCAGTTTCACTCCACCAAATTCAT 58.860 37.500 0.00 0.00 0.00 2.57
6729 7215 5.598005 TCAGTTTCACTCCACCAAATTCATT 59.402 36.000 0.00 0.00 0.00 2.57
6731 7217 6.762661 CAGTTTCACTCCACCAAATTCATTTT 59.237 34.615 0.00 0.00 0.00 1.82
6732 7218 7.925483 CAGTTTCACTCCACCAAATTCATTTTA 59.075 33.333 0.00 0.00 0.00 1.52
6733 7219 8.143835 AGTTTCACTCCACCAAATTCATTTTAG 58.856 33.333 0.00 0.00 0.00 1.85
6734 7220 7.831691 TTCACTCCACCAAATTCATTTTAGA 57.168 32.000 0.00 0.00 0.00 2.10
6735 7221 7.452880 TCACTCCACCAAATTCATTTTAGAG 57.547 36.000 0.00 0.00 0.00 2.43
6736 7222 6.071952 TCACTCCACCAAATTCATTTTAGAGC 60.072 38.462 0.00 0.00 0.00 4.09
6738 7224 6.071728 ACTCCACCAAATTCATTTTAGAGCAG 60.072 38.462 0.00 0.00 0.00 4.24
6739 7225 5.774690 TCCACCAAATTCATTTTAGAGCAGT 59.225 36.000 0.00 0.00 0.00 4.40
6740 7226 6.267471 TCCACCAAATTCATTTTAGAGCAGTT 59.733 34.615 0.00 0.00 0.00 3.16
6741 7227 6.930722 CCACCAAATTCATTTTAGAGCAGTTT 59.069 34.615 0.00 0.00 0.00 2.66
6742 7228 7.116805 CCACCAAATTCATTTTAGAGCAGTTTC 59.883 37.037 0.00 0.00 0.00 2.78
6743 7229 7.652909 CACCAAATTCATTTTAGAGCAGTTTCA 59.347 33.333 0.00 0.00 0.00 2.69
6744 7230 8.370182 ACCAAATTCATTTTAGAGCAGTTTCAT 58.630 29.630 0.00 0.00 0.00 2.57
6745 7231 9.859427 CCAAATTCATTTTAGAGCAGTTTCATA 57.141 29.630 0.00 0.00 0.00 2.15
6749 7235 9.896645 ATTCATTTTAGAGCAGTTTCATAGAGA 57.103 29.630 0.00 0.00 0.00 3.10
6750 7236 9.725019 TTCATTTTAGAGCAGTTTCATAGAGAA 57.275 29.630 0.00 0.00 0.00 2.87
6751 7237 9.376075 TCATTTTAGAGCAGTTTCATAGAGAAG 57.624 33.333 0.00 0.00 37.57 2.85
6752 7238 9.160496 CATTTTAGAGCAGTTTCATAGAGAAGT 57.840 33.333 0.00 0.00 37.57 3.01
6753 7239 9.732130 ATTTTAGAGCAGTTTCATAGAGAAGTT 57.268 29.630 0.00 0.00 37.57 2.66
6755 7241 6.107901 AGAGCAGTTTCATAGAGAAGTTGT 57.892 37.500 0.00 0.00 37.57 3.32
6757 7243 4.453819 AGCAGTTTCATAGAGAAGTTGTGC 59.546 41.667 0.00 0.00 37.57 4.57
6758 7244 4.214119 GCAGTTTCATAGAGAAGTTGTGCA 59.786 41.667 0.00 0.00 37.57 4.57
6759 7245 5.683859 CAGTTTCATAGAGAAGTTGTGCAC 58.316 41.667 10.75 10.75 37.57 4.57
6760 7246 5.468072 CAGTTTCATAGAGAAGTTGTGCACT 59.532 40.000 19.41 0.00 37.57 4.40
6761 7247 6.646653 CAGTTTCATAGAGAAGTTGTGCACTA 59.353 38.462 19.41 7.83 37.57 2.74
6762 7248 6.647067 AGTTTCATAGAGAAGTTGTGCACTAC 59.353 38.462 21.67 21.67 37.57 2.73
6763 7249 5.073311 TCATAGAGAAGTTGTGCACTACC 57.927 43.478 24.70 12.60 32.94 3.18
6764 7250 4.526650 TCATAGAGAAGTTGTGCACTACCA 59.473 41.667 24.70 0.00 32.94 3.25
6766 7252 4.150897 AGAGAAGTTGTGCACTACCAAA 57.849 40.909 24.70 5.15 32.94 3.28
6767 7253 4.130118 AGAGAAGTTGTGCACTACCAAAG 58.870 43.478 24.70 0.00 32.94 2.77
6768 7254 4.127171 GAGAAGTTGTGCACTACCAAAGA 58.873 43.478 24.70 0.00 32.94 2.52
6769 7255 4.523083 AGAAGTTGTGCACTACCAAAGAA 58.477 39.130 24.70 2.91 32.94 2.52
6770 7256 4.947388 AGAAGTTGTGCACTACCAAAGAAA 59.053 37.500 24.70 2.18 32.94 2.52
6771 7257 5.417580 AGAAGTTGTGCACTACCAAAGAAAA 59.582 36.000 24.70 1.44 32.94 2.29
6772 7258 5.248870 AGTTGTGCACTACCAAAGAAAAG 57.751 39.130 24.70 0.00 31.97 2.27
6773 7259 3.708563 TGTGCACTACCAAAGAAAAGC 57.291 42.857 19.41 0.00 0.00 3.51
6774 7260 3.287222 TGTGCACTACCAAAGAAAAGCT 58.713 40.909 19.41 0.00 0.00 3.74
6775 7261 3.699038 TGTGCACTACCAAAGAAAAGCTT 59.301 39.130 19.41 0.00 38.88 3.74
6776 7262 4.202010 TGTGCACTACCAAAGAAAAGCTTC 60.202 41.667 19.41 0.00 35.24 3.86
6777 7263 3.317993 TGCACTACCAAAGAAAAGCTTCC 59.682 43.478 0.00 0.00 35.24 3.46
6779 7265 4.021981 GCACTACCAAAGAAAAGCTTCCAT 60.022 41.667 0.00 0.00 35.24 3.41
6780 7266 5.464168 CACTACCAAAGAAAAGCTTCCATG 58.536 41.667 0.00 0.00 35.24 3.66
6781 7267 5.010012 CACTACCAAAGAAAAGCTTCCATGT 59.990 40.000 0.00 0.00 35.24 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.315925 TGGCGATTCCTTGAGCTAAG 57.684 50.000 0.00 0.00 36.11 2.18
1 2 2.290008 TGTTGGCGATTCCTTGAGCTAA 60.290 45.455 0.00 0.00 35.26 3.09
2 3 1.277842 TGTTGGCGATTCCTTGAGCTA 59.722 47.619 0.00 0.00 35.26 3.32
3 4 0.036732 TGTTGGCGATTCCTTGAGCT 59.963 50.000 0.00 0.00 35.26 4.09
8 9 0.035056 CCTCCTGTTGGCGATTCCTT 60.035 55.000 0.00 0.00 35.26 3.36
21 22 0.322816 CATGTCACAACCCCCTCCTG 60.323 60.000 0.00 0.00 0.00 3.86
22 23 0.772124 ACATGTCACAACCCCCTCCT 60.772 55.000 0.00 0.00 0.00 3.69
75 80 1.275666 TCCATTCCGGAGAGCAGAAA 58.724 50.000 3.34 0.00 39.64 2.52
101 106 0.390998 TCCAATCTCATCGCGCAACA 60.391 50.000 8.75 0.00 0.00 3.33
106 111 1.325640 CAGTTGTCCAATCTCATCGCG 59.674 52.381 0.00 0.00 0.00 5.87
120 125 1.416401 ACAATCGGTCACCTCAGTTGT 59.584 47.619 0.00 0.00 0.00 3.32
157 162 1.100463 ATGAACACTGCCACGTTGCA 61.100 50.000 14.21 14.21 39.37 4.08
206 211 3.149196 AGCACCATCGTCATTTGAACTT 58.851 40.909 0.00 0.00 0.00 2.66
446 452 9.073475 TGGTTTATCTATTGTAGTGCACTTTTT 57.927 29.630 27.06 10.36 0.00 1.94
484 491 8.988064 TCTTGATAAGATTTATCTATCCGTGC 57.012 34.615 9.48 0.00 35.76 5.34
512 519 7.332926 CCTGATCTTTATCTATATGTGCACACC 59.667 40.741 24.37 0.00 32.93 4.16
522 529 9.373450 GAGGCCATATCCTGATCTTTATCTATA 57.627 37.037 5.01 0.00 36.38 1.31
633 646 0.882042 CGTGCTATCCATCACCCTGC 60.882 60.000 0.00 0.00 0.00 4.85
634 647 0.250038 CCGTGCTATCCATCACCCTG 60.250 60.000 0.00 0.00 0.00 4.45
635 648 0.398522 TCCGTGCTATCCATCACCCT 60.399 55.000 0.00 0.00 0.00 4.34
636 649 0.249911 GTCCGTGCTATCCATCACCC 60.250 60.000 0.00 0.00 0.00 4.61
637 650 0.597637 CGTCCGTGCTATCCATCACC 60.598 60.000 0.00 0.00 0.00 4.02
638 651 0.597637 CCGTCCGTGCTATCCATCAC 60.598 60.000 0.00 0.00 0.00 3.06
674 694 3.583086 GGCCGCGCTGATTAACCC 61.583 66.667 5.56 0.00 0.00 4.11
706 726 4.961511 GCCGTCTGTGTGTGCCGA 62.962 66.667 0.00 0.00 0.00 5.54
749 773 0.321564 TTGTGTTGGGAGCGATGGAG 60.322 55.000 0.00 0.00 0.00 3.86
750 774 0.109532 TTTGTGTTGGGAGCGATGGA 59.890 50.000 0.00 0.00 0.00 3.41
751 775 0.240945 GTTTGTGTTGGGAGCGATGG 59.759 55.000 0.00 0.00 0.00 3.51
752 776 0.240945 GGTTTGTGTTGGGAGCGATG 59.759 55.000 0.00 0.00 0.00 3.84
753 777 0.893727 GGGTTTGTGTTGGGAGCGAT 60.894 55.000 0.00 0.00 0.00 4.58
754 778 1.527380 GGGTTTGTGTTGGGAGCGA 60.527 57.895 0.00 0.00 0.00 4.93
755 779 1.826054 TGGGTTTGTGTTGGGAGCG 60.826 57.895 0.00 0.00 0.00 5.03
756 780 1.040339 TGTGGGTTTGTGTTGGGAGC 61.040 55.000 0.00 0.00 0.00 4.70
757 781 0.744281 GTGTGGGTTTGTGTTGGGAG 59.256 55.000 0.00 0.00 0.00 4.30
758 782 0.684805 GGTGTGGGTTTGTGTTGGGA 60.685 55.000 0.00 0.00 0.00 4.37
759 783 0.972983 TGGTGTGGGTTTGTGTTGGG 60.973 55.000 0.00 0.00 0.00 4.12
760 784 0.174617 GTGGTGTGGGTTTGTGTTGG 59.825 55.000 0.00 0.00 0.00 3.77
761 785 0.174617 GGTGGTGTGGGTTTGTGTTG 59.825 55.000 0.00 0.00 0.00 3.33
762 786 0.251832 TGGTGGTGTGGGTTTGTGTT 60.252 50.000 0.00 0.00 0.00 3.32
763 787 0.968393 GTGGTGGTGTGGGTTTGTGT 60.968 55.000 0.00 0.00 0.00 3.72
764 788 1.671901 GGTGGTGGTGTGGGTTTGTG 61.672 60.000 0.00 0.00 0.00 3.33
765 789 1.380650 GGTGGTGGTGTGGGTTTGT 60.381 57.895 0.00 0.00 0.00 2.83
766 790 1.076339 AGGTGGTGGTGTGGGTTTG 60.076 57.895 0.00 0.00 0.00 2.93
767 791 1.229076 GAGGTGGTGGTGTGGGTTT 59.771 57.895 0.00 0.00 0.00 3.27
768 792 1.696314 AGAGGTGGTGGTGTGGGTT 60.696 57.895 0.00 0.00 0.00 4.11
769 793 2.039831 AGAGGTGGTGGTGTGGGT 60.040 61.111 0.00 0.00 0.00 4.51
784 808 0.034960 CGTGGAGTGAGGAGAGGAGA 60.035 60.000 0.00 0.00 0.00 3.71
785 809 1.662438 GCGTGGAGTGAGGAGAGGAG 61.662 65.000 0.00 0.00 0.00 3.69
786 810 1.679305 GCGTGGAGTGAGGAGAGGA 60.679 63.158 0.00 0.00 0.00 3.71
787 811 1.662438 GAGCGTGGAGTGAGGAGAGG 61.662 65.000 0.00 0.00 0.00 3.69
788 812 1.662438 GGAGCGTGGAGTGAGGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
789 813 1.679305 GGAGCGTGGAGTGAGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
826 866 2.742372 CGGAAAGTGCGAGTGGGG 60.742 66.667 0.00 0.00 30.86 4.96
828 868 2.357517 AGCGGAAAGTGCGAGTGG 60.358 61.111 0.00 0.00 37.44 4.00
855 895 1.758906 GACGGGAGGAGGAAGAGGG 60.759 68.421 0.00 0.00 0.00 4.30
1386 1439 4.100963 TGTTACTCTTCAGACCTTTGCAGA 59.899 41.667 0.00 0.00 0.00 4.26
1405 1458 8.845413 AAATTTTGCAGGCATCTTTTATGTTA 57.155 26.923 0.00 0.00 0.00 2.41
1584 1643 1.871676 GGTCAAACCTCACGTTTCTCC 59.128 52.381 0.00 0.00 42.98 3.71
1630 1689 4.201676 GGAAAAAGAACAAAAACCAGTGCG 60.202 41.667 0.00 0.00 0.00 5.34
1666 1725 3.686241 ACGTGTACTCACTAATACGCTGA 59.314 43.478 0.00 0.00 41.89 4.26
1679 1738 0.944311 CCACAGCCACACGTGTACTC 60.944 60.000 22.90 12.97 0.00 2.59
1713 1772 7.545965 TCTCTTGATCTCAAAGGATACGAAAAC 59.454 37.037 0.00 0.00 46.39 2.43
1751 1810 2.530177 AGTGAGCAACGTATCGTCATG 58.470 47.619 0.00 0.00 39.99 3.07
1761 1820 5.513141 CCATCATATATACGAGTGAGCAACG 59.487 44.000 0.00 0.00 0.00 4.10
1892 1955 1.406539 AGGCTTTTTGCTCACACACAG 59.593 47.619 0.00 0.00 42.39 3.66
1894 1957 3.708563 TTAGGCTTTTTGCTCACACAC 57.291 42.857 0.00 0.00 42.39 3.82
1901 1965 5.359756 CAGAAAGGTTTTAGGCTTTTTGCT 58.640 37.500 0.00 0.00 42.39 3.91
1984 2048 4.649088 TGGTGTGTATATCTTGTCCTCG 57.351 45.455 0.00 0.00 0.00 4.63
2013 2077 4.042062 AGTTCATCAGACAAAGGTGATGGA 59.958 41.667 11.38 1.31 46.79 3.41
2117 2184 0.383231 GTAGCATGATGTTGCCAGGC 59.617 55.000 3.66 3.66 43.83 4.85
2146 2213 2.863153 GCGCGTGCTTGAACAGAT 59.137 55.556 15.02 0.00 38.39 2.90
2151 2218 4.954680 GCAACGCGCGTGCTTGAA 62.955 61.111 38.44 0.00 39.65 2.69
2175 2242 1.027357 CATGTAAGGAGTGCCATGGC 58.973 55.000 30.54 30.54 42.35 4.40
2177 2244 1.674441 CAGCATGTAAGGAGTGCCATG 59.326 52.381 0.00 0.00 39.62 3.66
2180 2247 0.253044 TCCAGCATGTAAGGAGTGCC 59.747 55.000 0.00 0.00 39.62 5.01
2205 2272 7.715249 GCACCATCATATATACATATCCCGTTT 59.285 37.037 0.00 0.00 0.00 3.60
2219 2286 4.283467 ACTTTAGCGAGGCACCATCATATA 59.717 41.667 0.00 0.00 0.00 0.86
2326 2393 0.795735 CGACGAGCGGTCAATTACGT 60.796 55.000 15.89 5.92 46.42 3.57
2355 2422 6.237490 CCTCGTCTTTGTTTATAGTAGCAACG 60.237 42.308 0.00 0.00 0.00 4.10
2409 2478 4.784177 AGTAGTAGTACTCCTTCTCAGGC 58.216 47.826 5.96 0.00 40.58 4.85
2473 2543 7.781548 ACGGATATACGTTAGCTGAATTTTT 57.218 32.000 7.30 0.00 46.25 1.94
2474 2544 7.113965 CGTACGGATATACGTTAGCTGAATTTT 59.886 37.037 19.95 0.00 46.25 1.82
2475 2545 6.580041 CGTACGGATATACGTTAGCTGAATTT 59.420 38.462 19.95 0.00 46.25 1.82
2477 2547 5.625251 CGTACGGATATACGTTAGCTGAAT 58.375 41.667 19.95 0.00 46.25 2.57
2478 2548 5.022335 CGTACGGATATACGTTAGCTGAA 57.978 43.478 19.95 0.00 46.25 3.02
2479 2549 4.652175 CGTACGGATATACGTTAGCTGA 57.348 45.455 19.95 0.00 46.25 4.26
2642 2733 1.846439 CCACCTACCCATCTTGATGGT 59.154 52.381 23.31 15.55 40.06 3.55
2721 2818 5.044846 GGAATAATACTCCATATGGCCAGGT 60.045 44.000 17.58 14.04 32.77 4.00
2875 3051 5.932303 ACACTGTATATTGTTGTGACAGGTC 59.068 40.000 5.42 0.00 41.46 3.85
2885 3061 6.238897 CCACCACACAAACACTGTATATTGTT 60.239 38.462 3.26 0.00 36.10 2.83
2887 3063 5.471797 TCCACCACACAAACACTGTATATTG 59.528 40.000 0.00 0.00 36.10 1.90
2888 3064 5.626142 TCCACCACACAAACACTGTATATT 58.374 37.500 0.00 0.00 36.10 1.28
2889 3065 5.235850 TCCACCACACAAACACTGTATAT 57.764 39.130 0.00 0.00 36.10 0.86
2891 3067 3.569194 TCCACCACACAAACACTGTAT 57.431 42.857 0.00 0.00 36.10 2.29
2892 3068 3.011119 GTTCCACCACACAAACACTGTA 58.989 45.455 0.00 0.00 36.10 2.74
2907 3083 0.590195 CAGAGCTGCAACTGTTCCAC 59.410 55.000 15.24 0.00 0.00 4.02
2918 3094 0.676151 CTCTTTCACCCCAGAGCTGC 60.676 60.000 0.00 0.00 30.45 5.25
2943 3119 7.670364 AGCAATAGCAAATGGTTTAGAAAACT 58.330 30.769 2.84 0.00 45.49 2.66
2961 3137 7.484007 CACTGCTCTTTTGTTATCAAGCAATAG 59.516 37.037 0.00 0.00 33.12 1.73
2963 3139 6.154445 CACTGCTCTTTTGTTATCAAGCAAT 58.846 36.000 0.00 0.00 33.12 3.56
2983 3159 8.774586 AGCAAGTAGTTACTGAATTTTACACTG 58.225 33.333 0.00 0.00 36.50 3.66
3002 3178 3.674682 GCAAACAACAACACCAGCAAGTA 60.675 43.478 0.00 0.00 0.00 2.24
3037 3213 6.599244 CAGCAACTCTAATTCCCATCAGTTTA 59.401 38.462 0.00 0.00 0.00 2.01
3048 3224 6.668541 TTGCAGTATCAGCAACTCTAATTC 57.331 37.500 0.00 0.00 46.13 2.17
3089 3265 5.416013 CAGATAGTCAGTGGACAGTAACAGA 59.584 44.000 0.00 0.00 46.80 3.41
3116 3292 2.168106 AGTCTGCACAAATGTGGCAAAA 59.832 40.909 14.85 3.23 45.72 2.44
3124 3300 1.808945 GTCCCAGAGTCTGCACAAATG 59.191 52.381 15.10 0.00 0.00 2.32
3208 3384 4.346709 TCACAGGAACTATGTTGAGGTTGA 59.653 41.667 0.00 0.00 32.73 3.18
3271 3447 5.994250 AGCACCAGTACTATGATGAAATGT 58.006 37.500 9.89 0.00 0.00 2.71
3304 3480 3.312421 CAGTTTGGTGTGAACTAGGTGTG 59.688 47.826 0.00 0.00 35.68 3.82
3312 3488 8.730680 AGATATGATTTACAGTTTGGTGTGAAC 58.269 33.333 0.00 0.00 29.60 3.18
3320 3496 8.671921 AGTGCTTCAGATATGATTTACAGTTTG 58.328 33.333 0.00 0.00 0.00 2.93
3321 3497 8.798859 AGTGCTTCAGATATGATTTACAGTTT 57.201 30.769 0.00 0.00 0.00 2.66
3363 3539 5.128499 ACAGAATCTGATAACTGCTAGCTGT 59.872 40.000 20.37 20.37 35.18 4.40
3367 3543 6.980593 AGCTACAGAATCTGATAACTGCTAG 58.019 40.000 18.20 17.63 35.18 3.42
3412 3620 1.918262 TGCAGGTCAGAGGATGGAAAT 59.082 47.619 0.00 0.00 0.00 2.17
3414 3622 0.907486 CTGCAGGTCAGAGGATGGAA 59.093 55.000 5.57 0.00 45.72 3.53
3629 3839 4.117661 GCCGAGAAGCCGACGACT 62.118 66.667 0.00 0.00 0.00 4.18
3722 3932 5.010617 GGTCAGTTGCTATGGAAAAGGAAAA 59.989 40.000 0.00 0.00 0.00 2.29
3723 3933 4.522789 GGTCAGTTGCTATGGAAAAGGAAA 59.477 41.667 0.00 0.00 0.00 3.13
3724 3934 4.079253 GGTCAGTTGCTATGGAAAAGGAA 58.921 43.478 0.00 0.00 0.00 3.36
3725 3935 3.073798 TGGTCAGTTGCTATGGAAAAGGA 59.926 43.478 0.00 0.00 0.00 3.36
3726 3936 3.420893 TGGTCAGTTGCTATGGAAAAGG 58.579 45.455 0.00 0.00 0.00 3.11
3727 3937 5.404946 CAATGGTCAGTTGCTATGGAAAAG 58.595 41.667 0.00 0.00 0.00 2.27
3754 3964 0.109597 CGCCAAAATGTCAGACCAGC 60.110 55.000 0.00 0.00 0.00 4.85
3771 3981 6.301687 TGATAGAGACTGTAGTTATCACGC 57.698 41.667 2.37 0.00 0.00 5.34
3882 4092 9.327628 GAACATGACTACTACAGTACTCATCTA 57.672 37.037 0.00 0.00 37.72 1.98
3886 4096 7.664318 TCTTGAACATGACTACTACAGTACTCA 59.336 37.037 0.00 2.52 37.72 3.41
3887 4097 8.041829 TCTTGAACATGACTACTACAGTACTC 57.958 38.462 0.00 0.00 37.72 2.59
3888 4098 7.997773 TCTTGAACATGACTACTACAGTACT 57.002 36.000 0.00 0.00 37.72 2.73
3889 4099 9.640963 AATTCTTGAACATGACTACTACAGTAC 57.359 33.333 0.00 0.00 37.72 2.73
3891 4101 9.209175 GAAATTCTTGAACATGACTACTACAGT 57.791 33.333 0.00 0.00 41.47 3.55
3892 4102 8.376203 CGAAATTCTTGAACATGACTACTACAG 58.624 37.037 0.00 0.00 0.00 2.74
3893 4103 7.148639 GCGAAATTCTTGAACATGACTACTACA 60.149 37.037 0.00 0.00 0.00 2.74
3894 4104 7.174082 GCGAAATTCTTGAACATGACTACTAC 58.826 38.462 0.00 0.00 0.00 2.73
3895 4105 6.312918 GGCGAAATTCTTGAACATGACTACTA 59.687 38.462 0.00 0.00 0.00 1.82
3896 4106 5.122396 GGCGAAATTCTTGAACATGACTACT 59.878 40.000 0.00 0.00 0.00 2.57
3897 4107 5.324697 GGCGAAATTCTTGAACATGACTAC 58.675 41.667 0.00 0.00 0.00 2.73
3898 4108 4.394920 GGGCGAAATTCTTGAACATGACTA 59.605 41.667 0.00 0.00 0.00 2.59
3899 4109 3.191371 GGGCGAAATTCTTGAACATGACT 59.809 43.478 0.00 0.00 0.00 3.41
3900 4110 3.057596 TGGGCGAAATTCTTGAACATGAC 60.058 43.478 0.00 0.00 0.00 3.06
3957 4167 2.024464 TGGACCCTGTAAATTCCATGGG 60.024 50.000 13.02 0.00 40.37 4.00
4021 4231 4.682778 ACCAACTAGCACAACTGAACTA 57.317 40.909 0.00 0.00 0.00 2.24
4031 4241 1.604604 TTGCCTGAACCAACTAGCAC 58.395 50.000 0.00 0.00 0.00 4.40
4053 4263 3.519510 ACAGGCAGAGGCTAGTTCAATTA 59.480 43.478 0.00 0.00 40.87 1.40
4058 4272 3.462021 CATAACAGGCAGAGGCTAGTTC 58.538 50.000 10.06 0.00 40.87 3.01
4066 4280 1.709147 GCACGGCATAACAGGCAGAG 61.709 60.000 0.00 0.00 0.00 3.35
4067 4281 1.745115 GCACGGCATAACAGGCAGA 60.745 57.895 0.00 0.00 0.00 4.26
4083 4297 6.040054 CAGATCCCAGATACAATTTGATTGCA 59.960 38.462 2.79 0.00 43.98 4.08
4084 4298 6.263842 TCAGATCCCAGATACAATTTGATTGC 59.736 38.462 2.79 0.00 43.98 3.56
4139 4353 2.034687 GCTGCACTGGGTCCATGT 59.965 61.111 0.00 0.00 0.00 3.21
4245 4459 4.220821 TGCGGAACAGAAGAGAAGATAAGT 59.779 41.667 0.00 0.00 0.00 2.24
4249 4463 2.300152 TGTGCGGAACAGAAGAGAAGAT 59.700 45.455 0.00 0.00 33.78 2.40
4424 4648 7.647318 TCAAGTTTGTTTATGACGTACGAGTAA 59.353 33.333 24.41 13.89 0.00 2.24
4442 4713 5.461078 CCAAGTTTGCTCATTCTCAAGTTTG 59.539 40.000 0.00 0.00 0.00 2.93
4476 4747 4.505039 GGTCATACATAGCAGGGTTTAGGG 60.505 50.000 0.00 0.00 0.00 3.53
4480 4751 4.413520 AGATGGTCATACATAGCAGGGTTT 59.586 41.667 0.00 0.00 0.00 3.27
4481 4752 3.976654 AGATGGTCATACATAGCAGGGTT 59.023 43.478 0.00 0.00 0.00 4.11
4482 4753 3.580458 GAGATGGTCATACATAGCAGGGT 59.420 47.826 0.00 0.00 0.00 4.34
4483 4754 3.837146 AGAGATGGTCATACATAGCAGGG 59.163 47.826 0.00 0.00 0.00 4.45
4502 4773 3.374745 GTTTCAACAATGGTGCACAGAG 58.625 45.455 20.43 7.70 0.00 3.35
4541 4812 3.701040 AGGAACAGCTGAAAAACACACAT 59.299 39.130 23.35 0.00 0.00 3.21
4720 5002 2.968737 AGTGACGAGGAGCACTGAT 58.031 52.632 0.00 0.00 43.26 2.90
4765 5047 5.941788 ACTTGAGAGTAAACCCTGAAACAT 58.058 37.500 0.00 0.00 33.32 2.71
4784 5066 3.064820 AGTGAAGCGTGGTGTTAAACTTG 59.935 43.478 0.00 0.00 0.00 3.16
4790 5072 1.411246 AGTGAGTGAAGCGTGGTGTTA 59.589 47.619 0.00 0.00 0.00 2.41
4804 5086 3.312421 GCACAAACATGTACACAGTGAGT 59.688 43.478 7.81 0.00 0.00 3.41
4856 5164 0.100682 CCATCCAGTCGGTGTCGTAG 59.899 60.000 0.00 0.00 37.69 3.51
5020 5331 3.555966 TCTTCTATCACATCTCCGCTCA 58.444 45.455 0.00 0.00 0.00 4.26
5029 5340 8.037758 CAGTACTCCAAGTTTCTTCTATCACAT 58.962 37.037 0.00 0.00 0.00 3.21
5100 5411 1.591059 CAGCGGCTCGATCAGGAAG 60.591 63.158 0.00 0.00 0.00 3.46
5184 5495 2.547218 CCAGCTTATGATGCAAATGGCC 60.547 50.000 0.00 0.00 43.89 5.36
5221 5532 0.552363 TGCTGGATGTACCCATGCAT 59.448 50.000 0.00 0.00 46.59 3.96
5302 5613 2.017559 ATGCTTACGGCGAGAGGGAC 62.018 60.000 16.62 0.00 45.43 4.46
5355 5672 5.755849 ACTTGTGAGAGAGGAAAAGGAAAA 58.244 37.500 0.00 0.00 0.00 2.29
5356 5673 5.373812 ACTTGTGAGAGAGGAAAAGGAAA 57.626 39.130 0.00 0.00 0.00 3.13
5359 5676 3.251972 GCAACTTGTGAGAGAGGAAAAGG 59.748 47.826 0.00 0.00 0.00 3.11
5364 5681 1.070758 GGTGCAACTTGTGAGAGAGGA 59.929 52.381 0.00 0.00 36.74 3.71
5366 5683 1.143305 CGGTGCAACTTGTGAGAGAG 58.857 55.000 0.00 0.00 36.74 3.20
5367 5684 0.880278 GCGGTGCAACTTGTGAGAGA 60.880 55.000 0.00 0.00 36.74 3.10
5368 5685 0.882042 AGCGGTGCAACTTGTGAGAG 60.882 55.000 0.00 0.00 36.74 3.20
5369 5686 1.146041 AGCGGTGCAACTTGTGAGA 59.854 52.632 0.00 0.00 36.74 3.27
5370 5687 1.280746 CAGCGGTGCAACTTGTGAG 59.719 57.895 0.00 0.00 36.74 3.51
5793 6153 4.148825 ATGCTCAGGCCGACCGAC 62.149 66.667 0.00 0.00 42.76 4.79
5794 6154 4.147449 CATGCTCAGGCCGACCGA 62.147 66.667 0.00 0.00 42.76 4.69
5802 6162 3.145551 GCCTTGGCCATGCTCAGG 61.146 66.667 15.11 15.11 33.11 3.86
5803 6163 3.145551 GGCCTTGGCCATGCTCAG 61.146 66.667 24.50 10.59 0.00 3.35
5969 6369 4.338879 CCACATTCCTCTGTCCATTTTCT 58.661 43.478 0.00 0.00 0.00 2.52
6120 6520 3.448686 AGAGAAGAGAACACAACACACG 58.551 45.455 0.00 0.00 0.00 4.49
6201 6609 4.514401 AGAACGACTGAAGGAACAAAGTT 58.486 39.130 0.00 0.00 0.00 2.66
6202 6610 4.120589 GAGAACGACTGAAGGAACAAAGT 58.879 43.478 0.00 0.00 0.00 2.66
6227 6635 4.690748 TGAAGCAAAAGAGAATCGAATCGT 59.309 37.500 1.52 0.00 42.67 3.73
6342 6818 3.589735 TGCCCTATGTTTTCTGGGACTTA 59.410 43.478 0.00 0.00 42.11 2.24
6382 6858 1.000938 GCAAAGTCTGTTTCTGGCCAG 60.001 52.381 27.87 27.87 0.00 4.85
6409 6890 0.035152 TGGAAATCAGCCACGATGCT 60.035 50.000 0.00 0.00 44.00 3.79
6410 6891 0.379669 CTGGAAATCAGCCACGATGC 59.620 55.000 0.00 0.00 36.60 3.91
6414 6895 0.392193 AGCTCTGGAAATCAGCCACG 60.392 55.000 0.00 0.00 43.06 4.94
6438 6920 3.718815 AGAGGACTCTCACGTTTTGTTC 58.281 45.455 0.00 0.00 42.34 3.18
6456 6938 5.171339 TCAAGAGAAATTCCCCTCAAGAG 57.829 43.478 0.00 0.00 32.07 2.85
6457 6939 4.018960 CCTCAAGAGAAATTCCCCTCAAGA 60.019 45.833 0.00 0.00 32.07 3.02
6459 6941 3.010584 CCCTCAAGAGAAATTCCCCTCAA 59.989 47.826 0.00 0.00 32.07 3.02
6462 6944 1.286257 GCCCTCAAGAGAAATTCCCCT 59.714 52.381 0.00 0.00 0.00 4.79
6463 6945 1.286257 AGCCCTCAAGAGAAATTCCCC 59.714 52.381 0.00 0.00 0.00 4.81
6464 6946 2.757314 CAAGCCCTCAAGAGAAATTCCC 59.243 50.000 0.00 0.00 0.00 3.97
6465 6947 3.425659 ACAAGCCCTCAAGAGAAATTCC 58.574 45.455 0.00 0.00 0.00 3.01
6466 6948 5.003804 TGTACAAGCCCTCAAGAGAAATTC 58.996 41.667 0.00 0.00 0.00 2.17
6467 6949 4.985538 TGTACAAGCCCTCAAGAGAAATT 58.014 39.130 0.00 0.00 0.00 1.82
6468 6950 4.640771 TGTACAAGCCCTCAAGAGAAAT 57.359 40.909 0.00 0.00 0.00 2.17
6469 6951 4.640771 ATGTACAAGCCCTCAAGAGAAA 57.359 40.909 0.00 0.00 0.00 2.52
6470 6952 4.640771 AATGTACAAGCCCTCAAGAGAA 57.359 40.909 0.00 0.00 0.00 2.87
6471 6953 4.640771 AAATGTACAAGCCCTCAAGAGA 57.359 40.909 0.00 0.00 0.00 3.10
6502 6984 7.341256 TCTTGTAATTCCTCCGTCTACTGTATT 59.659 37.037 0.00 0.00 0.00 1.89
6503 6985 6.832384 TCTTGTAATTCCTCCGTCTACTGTAT 59.168 38.462 0.00 0.00 0.00 2.29
6504 6986 6.182627 TCTTGTAATTCCTCCGTCTACTGTA 58.817 40.000 0.00 0.00 0.00 2.74
6505 6987 5.014858 TCTTGTAATTCCTCCGTCTACTGT 58.985 41.667 0.00 0.00 0.00 3.55
6506 6988 5.578005 TCTTGTAATTCCTCCGTCTACTG 57.422 43.478 0.00 0.00 0.00 2.74
6583 7069 4.186159 CCCATCAATGGTTCATTTTGCTC 58.814 43.478 8.19 0.00 46.65 4.26
6631 7117 6.727394 ACTGTTTTTCATTAGGTGCCCTATA 58.273 36.000 2.26 0.00 35.87 1.31
6657 7143 6.976934 AACAAGCCCTAAATCTCTTGAAAA 57.023 33.333 7.69 0.00 39.22 2.29
6658 7144 6.239289 CCAAACAAGCCCTAAATCTCTTGAAA 60.239 38.462 7.69 0.00 39.22 2.69
6659 7145 5.243730 CCAAACAAGCCCTAAATCTCTTGAA 59.756 40.000 7.69 0.00 39.22 2.69
6660 7146 4.766891 CCAAACAAGCCCTAAATCTCTTGA 59.233 41.667 7.69 0.00 39.22 3.02
6661 7147 4.082026 CCCAAACAAGCCCTAAATCTCTTG 60.082 45.833 0.00 0.00 41.07 3.02
6662 7148 4.089361 CCCAAACAAGCCCTAAATCTCTT 58.911 43.478 0.00 0.00 0.00 2.85
6663 7149 3.333680 TCCCAAACAAGCCCTAAATCTCT 59.666 43.478 0.00 0.00 0.00 3.10
6664 7150 3.444034 GTCCCAAACAAGCCCTAAATCTC 59.556 47.826 0.00 0.00 0.00 2.75
6665 7151 3.076032 AGTCCCAAACAAGCCCTAAATCT 59.924 43.478 0.00 0.00 0.00 2.40
6666 7152 3.193479 CAGTCCCAAACAAGCCCTAAATC 59.807 47.826 0.00 0.00 0.00 2.17
6667 7153 3.165071 CAGTCCCAAACAAGCCCTAAAT 58.835 45.455 0.00 0.00 0.00 1.40
6668 7154 2.593026 CAGTCCCAAACAAGCCCTAAA 58.407 47.619 0.00 0.00 0.00 1.85
6670 7156 0.251165 GCAGTCCCAAACAAGCCCTA 60.251 55.000 0.00 0.00 0.00 3.53
6671 7157 1.531602 GCAGTCCCAAACAAGCCCT 60.532 57.895 0.00 0.00 0.00 5.19
6672 7158 1.527433 GAGCAGTCCCAAACAAGCCC 61.527 60.000 0.00 0.00 33.18 5.19
6673 7159 1.527433 GGAGCAGTCCCAAACAAGCC 61.527 60.000 0.00 0.00 36.76 4.35
6674 7160 1.856265 CGGAGCAGTCCCAAACAAGC 61.856 60.000 0.00 0.00 40.20 4.01
6675 7161 2.247790 CGGAGCAGTCCCAAACAAG 58.752 57.895 0.00 0.00 40.20 3.16
6676 7162 4.473643 CGGAGCAGTCCCAAACAA 57.526 55.556 0.00 0.00 40.20 2.83
6689 7175 5.179368 TGAAACTGATTTTAGTGAAGCGGAG 59.821 40.000 0.00 0.00 0.00 4.63
6691 7177 5.147162 GTGAAACTGATTTTAGTGAAGCGG 58.853 41.667 0.00 0.00 0.00 5.52
6706 7192 7.925483 TAAAATGAATTTGGTGGAGTGAAACTG 59.075 33.333 0.00 0.00 38.97 3.16
6708 7194 8.141268 TCTAAAATGAATTTGGTGGAGTGAAAC 58.859 33.333 0.00 0.00 31.85 2.78
6709 7195 8.243961 TCTAAAATGAATTTGGTGGAGTGAAA 57.756 30.769 0.00 0.00 31.85 2.69
6710 7196 7.523709 GCTCTAAAATGAATTTGGTGGAGTGAA 60.524 37.037 0.00 0.00 31.85 3.18
6712 7198 6.095377 GCTCTAAAATGAATTTGGTGGAGTG 58.905 40.000 0.00 0.00 31.85 3.51
6713 7199 5.774690 TGCTCTAAAATGAATTTGGTGGAGT 59.225 36.000 0.00 0.00 31.85 3.85
6716 7202 6.029346 ACTGCTCTAAAATGAATTTGGTGG 57.971 37.500 0.00 0.00 31.85 4.61
6717 7203 7.652909 TGAAACTGCTCTAAAATGAATTTGGTG 59.347 33.333 0.00 0.00 31.85 4.17
6718 7204 7.725251 TGAAACTGCTCTAAAATGAATTTGGT 58.275 30.769 0.00 0.00 31.85 3.67
6723 7209 9.896645 TCTCTATGAAACTGCTCTAAAATGAAT 57.103 29.630 0.00 0.00 0.00 2.57
6724 7210 9.725019 TTCTCTATGAAACTGCTCTAAAATGAA 57.275 29.630 0.00 0.00 0.00 2.57
6725 7211 9.376075 CTTCTCTATGAAACTGCTCTAAAATGA 57.624 33.333 0.00 0.00 33.79 2.57
6726 7212 9.160496 ACTTCTCTATGAAACTGCTCTAAAATG 57.840 33.333 0.00 0.00 33.79 2.32
6728 7214 8.993121 CAACTTCTCTATGAAACTGCTCTAAAA 58.007 33.333 0.00 0.00 33.79 1.52
6729 7215 8.150945 ACAACTTCTCTATGAAACTGCTCTAAA 58.849 33.333 0.00 0.00 33.79 1.85
6731 7217 7.093354 CACAACTTCTCTATGAAACTGCTCTA 58.907 38.462 0.00 0.00 33.79 2.43
6732 7218 5.931146 CACAACTTCTCTATGAAACTGCTCT 59.069 40.000 0.00 0.00 33.79 4.09
6733 7219 5.390356 GCACAACTTCTCTATGAAACTGCTC 60.390 44.000 0.00 0.00 33.79 4.26
6734 7220 4.453819 GCACAACTTCTCTATGAAACTGCT 59.546 41.667 0.00 0.00 33.79 4.24
6735 7221 4.214119 TGCACAACTTCTCTATGAAACTGC 59.786 41.667 0.00 0.00 33.79 4.40
6736 7222 5.468072 AGTGCACAACTTCTCTATGAAACTG 59.532 40.000 21.04 0.00 34.57 3.16
6738 7224 5.931441 AGTGCACAACTTCTCTATGAAAC 57.069 39.130 21.04 0.00 34.57 2.78
6739 7225 5.932303 GGTAGTGCACAACTTCTCTATGAAA 59.068 40.000 21.04 0.00 40.56 2.69
6740 7226 5.011635 TGGTAGTGCACAACTTCTCTATGAA 59.988 40.000 21.04 0.00 40.56 2.57
6741 7227 4.526650 TGGTAGTGCACAACTTCTCTATGA 59.473 41.667 21.04 0.00 40.56 2.15
6742 7228 4.820897 TGGTAGTGCACAACTTCTCTATG 58.179 43.478 21.04 0.00 40.56 2.23
6743 7229 5.483685 TTGGTAGTGCACAACTTCTCTAT 57.516 39.130 21.04 0.00 40.56 1.98
6744 7230 4.948341 TTGGTAGTGCACAACTTCTCTA 57.052 40.909 21.04 0.00 40.56 2.43
6745 7231 3.838244 TTGGTAGTGCACAACTTCTCT 57.162 42.857 21.04 0.00 40.56 3.10
6746 7232 4.127171 TCTTTGGTAGTGCACAACTTCTC 58.873 43.478 21.04 1.73 40.56 2.87
6747 7233 4.150897 TCTTTGGTAGTGCACAACTTCT 57.849 40.909 21.04 0.00 40.56 2.85
6748 7234 4.893424 TTCTTTGGTAGTGCACAACTTC 57.107 40.909 21.04 4.26 40.56 3.01
6749 7235 5.650543 CTTTTCTTTGGTAGTGCACAACTT 58.349 37.500 21.04 0.00 40.56 2.66
6750 7236 4.440112 GCTTTTCTTTGGTAGTGCACAACT 60.440 41.667 21.04 0.05 43.40 3.16
6751 7237 3.796717 GCTTTTCTTTGGTAGTGCACAAC 59.203 43.478 21.04 8.50 0.00 3.32
6752 7238 3.699038 AGCTTTTCTTTGGTAGTGCACAA 59.301 39.130 21.04 0.77 0.00 3.33
6753 7239 3.287222 AGCTTTTCTTTGGTAGTGCACA 58.713 40.909 21.04 1.84 0.00 4.57
6755 7241 3.317993 GGAAGCTTTTCTTTGGTAGTGCA 59.682 43.478 0.00 0.00 34.56 4.57
6757 7243 5.010012 ACATGGAAGCTTTTCTTTGGTAGTG 59.990 40.000 0.00 0.00 34.56 2.74
6758 7244 5.140454 ACATGGAAGCTTTTCTTTGGTAGT 58.860 37.500 0.00 0.00 34.56 2.73
6759 7245 5.712152 ACATGGAAGCTTTTCTTTGGTAG 57.288 39.130 0.00 0.00 34.56 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.