Multiple sequence alignment - TraesCS4B01G287700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G287700 chr4B 100.000 2987 0 0 1 2987 571057879 571060865 0.000000e+00 5517
1 TraesCS4B01G287700 chr4D 92.335 2570 127 28 1 2531 456692733 456690195 0.000000e+00 3591
2 TraesCS4B01G287700 chr4A 91.679 2632 126 40 1 2570 11274874 11272274 0.000000e+00 3561
3 TraesCS4B01G287700 chr7D 91.237 194 13 4 2689 2881 548196972 548197162 8.210000e-66 261
4 TraesCS4B01G287700 chr7D 89.163 203 15 6 2678 2876 264838838 264839037 2.300000e-61 246
5 TraesCS4B01G287700 chr6D 91.146 192 13 4 2689 2879 199208909 199209097 1.060000e-64 257
6 TraesCS4B01G287700 chr5D 91.146 192 13 4 2689 2879 220494620 220494432 1.060000e-64 257
7 TraesCS4B01G287700 chr3D 91.579 190 11 5 2689 2876 9631645 9631831 1.060000e-64 257
8 TraesCS4B01G287700 chr3D 90.674 193 14 4 2689 2880 581727533 581727344 1.370000e-63 254
9 TraesCS4B01G287700 chr3B 91.146 192 13 4 2689 2879 818461781 818461593 1.060000e-64 257
10 TraesCS4B01G287700 chr1D 90.625 192 14 4 2689 2879 329834089 329833901 4.940000e-63 252
11 TraesCS4B01G287700 chr6B 87.678 211 20 6 2678 2886 652324421 652324215 1.070000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G287700 chr4B 571057879 571060865 2986 False 5517 5517 100.000 1 2987 1 chr4B.!!$F1 2986
1 TraesCS4B01G287700 chr4D 456690195 456692733 2538 True 3591 3591 92.335 1 2531 1 chr4D.!!$R1 2530
2 TraesCS4B01G287700 chr4A 11272274 11274874 2600 True 3561 3561 91.679 1 2570 1 chr4A.!!$R1 2569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 331 0.108585 AACAGGTGAACGGTGATGCT 59.891 50.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 2376 0.030369 GCTACGCGCCTACACTATGT 59.97 55.0 5.73 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.756195 ACAATATATGTGTGTGTGCATCC 57.244 39.130 0.00 0.00 41.93 3.51
59 60 3.153919 TGCAGAGGTTTGGGTTGTTATC 58.846 45.455 0.00 0.00 0.00 1.75
60 61 2.492088 GCAGAGGTTTGGGTTGTTATCC 59.508 50.000 0.00 0.00 0.00 2.59
104 112 8.514330 TGAGAATACATATTGTTAAACCCACC 57.486 34.615 0.00 0.00 0.00 4.61
106 114 8.887264 AGAATACATATTGTTAAACCCACCAA 57.113 30.769 0.00 0.00 0.00 3.67
107 115 9.315363 AGAATACATATTGTTAAACCCACCAAA 57.685 29.630 0.00 0.00 0.00 3.28
138 146 7.312899 AGCTTATTTAACAATTTTGTCCTCCG 58.687 34.615 0.00 0.00 41.31 4.63
206 214 7.202526 TCTTTATATGCAAACCATTAGCTTGC 58.797 34.615 0.00 0.00 44.54 4.01
292 300 4.410400 CCCGTGAACAGGGCCCTC 62.410 72.222 25.77 12.73 42.77 4.30
323 331 0.108585 AACAGGTGAACGGTGATGCT 59.891 50.000 0.00 0.00 0.00 3.79
350 358 6.151691 CGAAGAAAGGAATGCAAGAAAATGA 58.848 36.000 0.00 0.00 0.00 2.57
431 443 6.761714 CCTACCAGTTGTATGTTTCACTATCC 59.238 42.308 0.00 0.00 0.00 2.59
432 444 6.121776 ACCAGTTGTATGTTTCACTATCCA 57.878 37.500 0.00 0.00 0.00 3.41
484 496 1.065636 AGAGTGTGCATCCATCCACAG 60.066 52.381 5.77 0.00 42.09 3.66
650 671 2.031157 GGACCACAAACATCCGAACTTG 60.031 50.000 0.00 0.00 0.00 3.16
691 712 3.052036 CCAAAGCGTGAATGTTCCAAAG 58.948 45.455 0.00 0.00 0.00 2.77
753 776 7.563724 ACTATGGTTAACCTTTCTAGGACAA 57.436 36.000 24.78 0.73 45.05 3.18
792 815 4.012374 CACACTTGCCCACTAAATCTCAT 58.988 43.478 0.00 0.00 0.00 2.90
810 833 1.067060 CATCACTTATCGTCTCCCGCA 59.933 52.381 0.00 0.00 36.19 5.69
815 838 1.269723 CTTATCGTCTCCCGCATGCTA 59.730 52.381 17.13 0.00 36.19 3.49
878 901 3.814005 TCCCTAAAGATTAGCGTCCAC 57.186 47.619 0.00 0.00 0.00 4.02
879 902 3.371965 TCCCTAAAGATTAGCGTCCACT 58.628 45.455 0.00 0.00 0.00 4.00
880 903 3.383825 TCCCTAAAGATTAGCGTCCACTC 59.616 47.826 0.00 0.00 0.00 3.51
881 904 3.492829 CCCTAAAGATTAGCGTCCACTCC 60.493 52.174 0.00 0.00 0.00 3.85
882 905 3.132289 CCTAAAGATTAGCGTCCACTCCA 59.868 47.826 0.00 0.00 0.00 3.86
1358 1394 3.884350 CTCGTTCCCGATCGCCGA 61.884 66.667 10.32 12.59 43.27 5.54
1418 1454 2.195139 GCTGCCCATGAGGATGCT 59.805 61.111 0.00 0.00 38.24 3.79
1451 1487 1.965754 GAGGAGATGGCGAGCAAGGT 61.966 60.000 0.00 0.00 0.00 3.50
1457 1493 1.841302 ATGGCGAGCAAGGTCAAGGA 61.841 55.000 0.00 0.00 0.00 3.36
1461 1497 1.682257 GAGCAAGGTCAAGGAGCCT 59.318 57.895 0.00 0.00 36.51 4.58
1531 1567 2.878429 CTACGCACGAGGACTGCT 59.122 61.111 0.00 0.00 32.03 4.24
1532 1568 1.226435 CTACGCACGAGGACTGCTC 60.226 63.158 0.00 0.00 32.03 4.26
1618 1654 4.778415 GCTTCCGCGACGAGCTGA 62.778 66.667 8.23 0.00 45.59 4.26
1627 1663 2.992114 ACGAGCTGAACGGCCTCT 60.992 61.111 0.00 0.00 34.93 3.69
1746 1782 3.043713 CTGAAGCGGCTGCACGAA 61.044 61.111 21.93 0.86 46.23 3.85
1870 1906 4.354155 GCTGCAAGGTGTACGTGA 57.646 55.556 0.00 0.00 0.00 4.35
1875 1911 0.782384 GCAAGGTGTACGTGAACGAG 59.218 55.000 10.26 0.00 43.02 4.18
1908 1950 4.493747 GGCGAAGGGACGGACGAG 62.494 72.222 0.00 0.00 0.00 4.18
2008 2050 1.616872 CGTTGCAGAATTTTGCCGGC 61.617 55.000 22.73 22.73 43.43 6.13
2058 2100 5.010820 TCCTGTGATTTTGTGAATGCATGAA 59.989 36.000 0.00 0.00 0.00 2.57
2062 2104 5.175491 GTGATTTTGTGAATGCATGAACGTT 59.825 36.000 0.00 0.00 0.00 3.99
2065 2107 1.870402 TGTGAATGCATGAACGTTCGT 59.130 42.857 22.48 19.98 38.21 3.85
2110 2155 1.887242 TGACGCGCTTGCTGTTTCT 60.887 52.632 5.73 0.00 36.08 2.52
2142 2187 3.126831 CTGCGATTCAATGGGTAGAGAC 58.873 50.000 0.00 0.00 0.00 3.36
2143 2188 2.128035 GCGATTCAATGGGTAGAGACG 58.872 52.381 0.00 0.00 0.00 4.18
2161 2206 2.956194 CCAACGCTGCATGCTTGA 59.044 55.556 20.33 0.00 40.11 3.02
2162 2207 1.443194 CCAACGCTGCATGCTTGAC 60.443 57.895 20.33 4.55 40.11 3.18
2163 2208 1.577922 CAACGCTGCATGCTTGACT 59.422 52.632 20.33 0.00 40.11 3.41
2164 2209 0.728129 CAACGCTGCATGCTTGACTG 60.728 55.000 20.33 7.22 40.11 3.51
2165 2210 1.168407 AACGCTGCATGCTTGACTGT 61.168 50.000 20.33 6.03 40.11 3.55
2166 2211 1.168407 ACGCTGCATGCTTGACTGTT 61.168 50.000 20.33 0.00 40.11 3.16
2167 2212 0.728129 CGCTGCATGCTTGACTGTTG 60.728 55.000 20.33 0.00 40.11 3.33
2270 2324 1.688197 AGTGGACCGTTTCCTTTACGA 59.312 47.619 0.00 0.00 46.10 3.43
2273 2327 2.102925 TGGACCGTTTCCTTTACGAGTT 59.897 45.455 0.00 0.00 46.10 3.01
2278 2332 2.716704 CGTTTCCTTTACGAGTTTCGCG 60.717 50.000 0.00 0.00 45.12 5.87
2317 2371 4.647611 TGCTAGCTAGTTCTAGGCTCTAG 58.352 47.826 21.62 10.54 37.20 2.43
2324 2378 6.945938 CTAGTTCTAGGCTCTAGCTTAACA 57.054 41.667 0.00 0.00 41.70 2.41
2419 2490 4.574599 AGAAAAGAAATGCAAAGCGAGT 57.425 36.364 0.00 0.00 0.00 4.18
2424 2495 2.225019 AGAAATGCAAAGCGAGTCACAG 59.775 45.455 0.00 0.00 0.00 3.66
2452 2523 1.070601 ACAATTGGAGCAAAACAGGGC 59.929 47.619 10.83 0.00 0.00 5.19
2531 2606 3.394940 AGATCAATCATCATCCAGCAGGT 59.605 43.478 0.00 0.00 33.29 4.00
2532 2607 3.657398 TCAATCATCATCCAGCAGGTT 57.343 42.857 0.00 0.00 35.89 3.50
2533 2608 3.548770 TCAATCATCATCCAGCAGGTTC 58.451 45.455 0.00 0.00 35.89 3.62
2565 2653 3.421844 GGACAAGCCTTGTTTGGAGTAT 58.578 45.455 12.09 0.00 45.52 2.12
2566 2654 3.191371 GGACAAGCCTTGTTTGGAGTATG 59.809 47.826 12.09 0.00 45.52 2.39
2567 2655 3.821033 GACAAGCCTTGTTTGGAGTATGT 59.179 43.478 12.09 0.00 45.52 2.29
2569 2657 5.381757 ACAAGCCTTGTTTGGAGTATGTAA 58.618 37.500 3.74 0.00 42.22 2.41
2570 2658 6.010219 ACAAGCCTTGTTTGGAGTATGTAAT 58.990 36.000 3.74 0.00 42.22 1.89
2571 2659 6.493458 ACAAGCCTTGTTTGGAGTATGTAATT 59.507 34.615 3.74 0.00 42.22 1.40
2572 2660 7.015195 ACAAGCCTTGTTTGGAGTATGTAATTT 59.985 33.333 3.74 0.00 42.22 1.82
2573 2661 7.158099 AGCCTTGTTTGGAGTATGTAATTTC 57.842 36.000 0.00 0.00 0.00 2.17
2574 2662 6.719370 AGCCTTGTTTGGAGTATGTAATTTCA 59.281 34.615 0.00 0.00 0.00 2.69
2575 2663 7.029563 GCCTTGTTTGGAGTATGTAATTTCAG 58.970 38.462 0.00 0.00 0.00 3.02
2576 2664 7.094377 GCCTTGTTTGGAGTATGTAATTTCAGA 60.094 37.037 0.00 0.00 0.00 3.27
2577 2665 8.454106 CCTTGTTTGGAGTATGTAATTTCAGAG 58.546 37.037 0.00 0.00 0.00 3.35
2578 2666 8.918202 TTGTTTGGAGTATGTAATTTCAGAGT 57.082 30.769 0.00 0.00 0.00 3.24
2579 2667 8.322906 TGTTTGGAGTATGTAATTTCAGAGTG 57.677 34.615 0.00 0.00 0.00 3.51
2580 2668 6.985188 TTGGAGTATGTAATTTCAGAGTGC 57.015 37.500 0.13 0.13 0.00 4.40
2581 2669 6.299805 TGGAGTATGTAATTTCAGAGTGCT 57.700 37.500 7.38 0.00 0.00 4.40
2582 2670 7.418337 TGGAGTATGTAATTTCAGAGTGCTA 57.582 36.000 7.38 0.00 0.00 3.49
2583 2671 7.492524 TGGAGTATGTAATTTCAGAGTGCTAG 58.507 38.462 7.38 0.00 0.00 3.42
2584 2672 7.342026 TGGAGTATGTAATTTCAGAGTGCTAGA 59.658 37.037 7.38 0.00 0.00 2.43
2585 2673 8.364142 GGAGTATGTAATTTCAGAGTGCTAGAT 58.636 37.037 0.00 0.00 0.00 1.98
2586 2674 9.190858 GAGTATGTAATTTCAGAGTGCTAGATG 57.809 37.037 0.00 0.00 0.00 2.90
2587 2675 8.147058 AGTATGTAATTTCAGAGTGCTAGATGG 58.853 37.037 0.00 0.00 0.00 3.51
2588 2676 6.299805 TGTAATTTCAGAGTGCTAGATGGT 57.700 37.500 0.00 0.00 0.00 3.55
2589 2677 6.108687 TGTAATTTCAGAGTGCTAGATGGTG 58.891 40.000 0.00 0.00 0.00 4.17
2590 2678 2.680312 TTCAGAGTGCTAGATGGTGC 57.320 50.000 0.00 0.00 0.00 5.01
2591 2679 0.826715 TCAGAGTGCTAGATGGTGCC 59.173 55.000 0.00 0.00 0.00 5.01
2592 2680 0.179062 CAGAGTGCTAGATGGTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
2593 2681 0.326048 AGAGTGCTAGATGGTGCCCT 60.326 55.000 0.00 0.00 0.00 5.19
2594 2682 0.179062 GAGTGCTAGATGGTGCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
2595 2683 1.821332 GTGCTAGATGGTGCCCTGC 60.821 63.158 0.00 0.00 0.00 4.85
2596 2684 1.997311 TGCTAGATGGTGCCCTGCT 60.997 57.895 0.00 0.00 0.00 4.24
2597 2685 1.227793 GCTAGATGGTGCCCTGCTC 60.228 63.158 0.00 0.00 0.00 4.26
2598 2686 1.068753 CTAGATGGTGCCCTGCTCG 59.931 63.158 0.00 0.00 0.00 5.03
2599 2687 2.985512 CTAGATGGTGCCCTGCTCGC 62.986 65.000 0.00 0.00 0.00 5.03
2600 2688 4.479993 GATGGTGCCCTGCTCGCT 62.480 66.667 0.00 0.00 0.00 4.93
2601 2689 3.984193 GATGGTGCCCTGCTCGCTT 62.984 63.158 0.00 0.00 0.00 4.68
2607 2695 3.429141 CCCTGCTCGCTTGCTGTG 61.429 66.667 0.00 0.00 0.00 3.66
2608 2696 3.429141 CCTGCTCGCTTGCTGTGG 61.429 66.667 0.00 0.00 0.00 4.17
2609 2697 3.429141 CTGCTCGCTTGCTGTGGG 61.429 66.667 0.00 0.00 0.00 4.61
2610 2698 3.889134 CTGCTCGCTTGCTGTGGGA 62.889 63.158 0.00 0.00 0.00 4.37
2611 2699 2.437359 GCTCGCTTGCTGTGGGAT 60.437 61.111 0.00 0.00 0.00 3.85
2612 2700 2.042831 GCTCGCTTGCTGTGGGATT 61.043 57.895 0.00 0.00 0.00 3.01
2613 2701 0.744414 GCTCGCTTGCTGTGGGATTA 60.744 55.000 0.00 0.00 0.00 1.75
2614 2702 1.737838 CTCGCTTGCTGTGGGATTAA 58.262 50.000 0.00 0.00 0.00 1.40
2615 2703 2.083774 CTCGCTTGCTGTGGGATTAAA 58.916 47.619 0.00 0.00 0.00 1.52
2616 2704 2.083774 TCGCTTGCTGTGGGATTAAAG 58.916 47.619 0.00 0.00 0.00 1.85
2617 2705 1.812571 CGCTTGCTGTGGGATTAAAGT 59.187 47.619 0.00 0.00 0.00 2.66
2618 2706 2.159517 CGCTTGCTGTGGGATTAAAGTC 60.160 50.000 0.00 0.00 0.00 3.01
2619 2707 2.819608 GCTTGCTGTGGGATTAAAGTCA 59.180 45.455 0.00 0.00 0.00 3.41
2620 2708 3.445096 GCTTGCTGTGGGATTAAAGTCAT 59.555 43.478 0.00 0.00 0.00 3.06
2621 2709 4.676196 GCTTGCTGTGGGATTAAAGTCATG 60.676 45.833 0.00 0.00 0.00 3.07
2622 2710 2.754552 TGCTGTGGGATTAAAGTCATGC 59.245 45.455 0.00 0.00 0.00 4.06
2623 2711 2.754552 GCTGTGGGATTAAAGTCATGCA 59.245 45.455 0.00 0.00 0.00 3.96
2624 2712 3.382546 GCTGTGGGATTAAAGTCATGCAT 59.617 43.478 0.00 0.00 0.00 3.96
2625 2713 4.735578 GCTGTGGGATTAAAGTCATGCATG 60.736 45.833 21.07 21.07 0.00 4.06
2626 2714 3.130869 TGTGGGATTAAAGTCATGCATGC 59.869 43.478 22.25 11.82 0.00 4.06
2627 2715 2.358582 TGGGATTAAAGTCATGCATGCG 59.641 45.455 22.25 0.00 0.00 4.73
2628 2716 2.618241 GGGATTAAAGTCATGCATGCGA 59.382 45.455 22.25 2.48 0.00 5.10
2629 2717 3.304257 GGGATTAAAGTCATGCATGCGAG 60.304 47.826 22.25 8.09 0.00 5.03
2630 2718 3.561310 GGATTAAAGTCATGCATGCGAGA 59.439 43.478 22.25 10.57 0.00 4.04
2631 2719 4.214971 GGATTAAAGTCATGCATGCGAGAT 59.785 41.667 22.25 10.24 0.00 2.75
2632 2720 4.541085 TTAAAGTCATGCATGCGAGATG 57.459 40.909 22.25 11.53 0.00 2.90
2633 2721 2.320745 AAGTCATGCATGCGAGATGA 57.679 45.000 22.25 13.78 0.00 2.92
2634 2722 1.867166 AGTCATGCATGCGAGATGAG 58.133 50.000 22.25 0.00 0.00 2.90
2635 2723 0.866427 GTCATGCATGCGAGATGAGG 59.134 55.000 22.25 0.00 0.00 3.86
2636 2724 0.466963 TCATGCATGCGAGATGAGGT 59.533 50.000 22.25 0.00 0.00 3.85
2637 2725 1.688197 TCATGCATGCGAGATGAGGTA 59.312 47.619 22.25 0.00 0.00 3.08
2638 2726 2.301009 TCATGCATGCGAGATGAGGTAT 59.699 45.455 22.25 0.00 0.00 2.73
2639 2727 2.159327 TGCATGCGAGATGAGGTATG 57.841 50.000 14.09 0.00 0.00 2.39
2640 2728 1.413812 TGCATGCGAGATGAGGTATGT 59.586 47.619 14.09 0.00 0.00 2.29
2641 2729 2.627699 TGCATGCGAGATGAGGTATGTA 59.372 45.455 14.09 0.00 0.00 2.29
2642 2730 3.069443 TGCATGCGAGATGAGGTATGTAA 59.931 43.478 14.09 0.00 0.00 2.41
2643 2731 4.058124 GCATGCGAGATGAGGTATGTAAA 58.942 43.478 0.00 0.00 0.00 2.01
2644 2732 4.692625 GCATGCGAGATGAGGTATGTAAAT 59.307 41.667 0.00 0.00 0.00 1.40
2645 2733 5.390251 GCATGCGAGATGAGGTATGTAAATG 60.390 44.000 0.00 0.00 0.00 2.32
2646 2734 5.529581 TGCGAGATGAGGTATGTAAATGA 57.470 39.130 0.00 0.00 0.00 2.57
2647 2735 5.289595 TGCGAGATGAGGTATGTAAATGAC 58.710 41.667 0.00 0.00 0.00 3.06
2648 2736 5.069119 TGCGAGATGAGGTATGTAAATGACT 59.931 40.000 0.00 0.00 0.00 3.41
2649 2737 5.403766 GCGAGATGAGGTATGTAAATGACTG 59.596 44.000 0.00 0.00 0.00 3.51
2650 2738 5.403766 CGAGATGAGGTATGTAAATGACTGC 59.596 44.000 0.00 0.00 0.00 4.40
2651 2739 6.491714 AGATGAGGTATGTAAATGACTGCT 57.508 37.500 0.00 0.00 0.00 4.24
2652 2740 6.286758 AGATGAGGTATGTAAATGACTGCTG 58.713 40.000 0.00 0.00 0.00 4.41
2653 2741 4.191544 TGAGGTATGTAAATGACTGCTGC 58.808 43.478 0.00 0.00 0.00 5.25
2654 2742 4.191544 GAGGTATGTAAATGACTGCTGCA 58.808 43.478 0.88 0.88 0.00 4.41
2655 2743 3.941483 AGGTATGTAAATGACTGCTGCAC 59.059 43.478 0.00 0.00 0.00 4.57
2656 2744 3.065371 GGTATGTAAATGACTGCTGCACC 59.935 47.826 0.00 0.00 0.00 5.01
2657 2745 1.155889 TGTAAATGACTGCTGCACCG 58.844 50.000 0.00 0.00 0.00 4.94
2658 2746 1.270571 TGTAAATGACTGCTGCACCGA 60.271 47.619 0.00 0.00 0.00 4.69
2659 2747 1.804151 GTAAATGACTGCTGCACCGAA 59.196 47.619 0.00 0.00 0.00 4.30
2660 2748 1.317613 AAATGACTGCTGCACCGAAA 58.682 45.000 0.00 0.00 0.00 3.46
2661 2749 0.593128 AATGACTGCTGCACCGAAAC 59.407 50.000 0.00 0.00 0.00 2.78
2662 2750 0.534877 ATGACTGCTGCACCGAAACA 60.535 50.000 0.00 0.00 0.00 2.83
2663 2751 0.534877 TGACTGCTGCACCGAAACAT 60.535 50.000 0.00 0.00 0.00 2.71
2664 2752 0.110056 GACTGCTGCACCGAAACATG 60.110 55.000 0.00 0.00 0.00 3.21
2665 2753 0.534877 ACTGCTGCACCGAAACATGA 60.535 50.000 0.00 0.00 0.00 3.07
2666 2754 0.592637 CTGCTGCACCGAAACATGAA 59.407 50.000 0.00 0.00 0.00 2.57
2667 2755 1.200716 CTGCTGCACCGAAACATGAAT 59.799 47.619 0.00 0.00 0.00 2.57
2668 2756 2.419673 CTGCTGCACCGAAACATGAATA 59.580 45.455 0.00 0.00 0.00 1.75
2669 2757 2.816672 TGCTGCACCGAAACATGAATAA 59.183 40.909 0.00 0.00 0.00 1.40
2670 2758 3.171277 GCTGCACCGAAACATGAATAAC 58.829 45.455 0.00 0.00 0.00 1.89
2671 2759 3.365868 GCTGCACCGAAACATGAATAACA 60.366 43.478 0.00 0.00 0.00 2.41
2672 2760 4.153958 TGCACCGAAACATGAATAACAC 57.846 40.909 0.00 0.00 0.00 3.32
2673 2761 3.057876 TGCACCGAAACATGAATAACACC 60.058 43.478 0.00 0.00 0.00 4.16
2674 2762 3.057876 GCACCGAAACATGAATAACACCA 60.058 43.478 0.00 0.00 0.00 4.17
2675 2763 4.557695 GCACCGAAACATGAATAACACCAA 60.558 41.667 0.00 0.00 0.00 3.67
2676 2764 5.524284 CACCGAAACATGAATAACACCAAA 58.476 37.500 0.00 0.00 0.00 3.28
2677 2765 6.155827 CACCGAAACATGAATAACACCAAAT 58.844 36.000 0.00 0.00 0.00 2.32
2678 2766 6.644592 CACCGAAACATGAATAACACCAAATT 59.355 34.615 0.00 0.00 0.00 1.82
2679 2767 7.810282 CACCGAAACATGAATAACACCAAATTA 59.190 33.333 0.00 0.00 0.00 1.40
2680 2768 8.527810 ACCGAAACATGAATAACACCAAATTAT 58.472 29.630 0.00 0.00 0.00 1.28
2692 2780 9.880157 ATAACACCAAATTATAAGTACTCACGT 57.120 29.630 0.00 0.00 0.00 4.49
2693 2781 7.591006 ACACCAAATTATAAGTACTCACGTG 57.409 36.000 9.94 9.94 0.00 4.49
2694 2782 7.156673 ACACCAAATTATAAGTACTCACGTGT 58.843 34.615 16.51 0.00 0.00 4.49
2695 2783 8.306038 ACACCAAATTATAAGTACTCACGTGTA 58.694 33.333 16.51 0.00 0.00 2.90
2696 2784 9.309516 CACCAAATTATAAGTACTCACGTGTAT 57.690 33.333 16.51 7.36 0.00 2.29
2697 2785 9.525409 ACCAAATTATAAGTACTCACGTGTATC 57.475 33.333 16.51 5.18 0.00 2.24
2698 2786 9.745880 CCAAATTATAAGTACTCACGTGTATCT 57.254 33.333 16.51 7.38 0.00 1.98
2704 2792 5.715429 AGTACTCACGTGTATCTTAGTCG 57.285 43.478 16.51 0.00 0.00 4.18
2705 2793 5.174395 AGTACTCACGTGTATCTTAGTCGT 58.826 41.667 16.51 0.00 35.12 4.34
2706 2794 4.596801 ACTCACGTGTATCTTAGTCGTC 57.403 45.455 16.51 0.00 32.47 4.20
2707 2795 3.999001 ACTCACGTGTATCTTAGTCGTCA 59.001 43.478 16.51 0.00 32.47 4.35
2708 2796 4.453478 ACTCACGTGTATCTTAGTCGTCAA 59.547 41.667 16.51 0.00 32.47 3.18
2709 2797 5.123502 ACTCACGTGTATCTTAGTCGTCAAT 59.876 40.000 16.51 0.00 32.47 2.57
2710 2798 5.946298 TCACGTGTATCTTAGTCGTCAATT 58.054 37.500 16.51 0.00 32.47 2.32
2711 2799 6.384224 TCACGTGTATCTTAGTCGTCAATTT 58.616 36.000 16.51 0.00 32.47 1.82
2712 2800 7.529158 TCACGTGTATCTTAGTCGTCAATTTA 58.471 34.615 16.51 0.00 32.47 1.40
2713 2801 8.022550 TCACGTGTATCTTAGTCGTCAATTTAA 58.977 33.333 16.51 0.00 32.47 1.52
2714 2802 8.100306 CACGTGTATCTTAGTCGTCAATTTAAC 58.900 37.037 7.58 0.00 32.47 2.01
2715 2803 8.025445 ACGTGTATCTTAGTCGTCAATTTAACT 58.975 33.333 0.00 0.00 0.00 2.24
2716 2804 9.494479 CGTGTATCTTAGTCGTCAATTTAACTA 57.506 33.333 0.00 0.00 0.00 2.24
2824 2912 8.451908 AATGTATGCCTCTTATTAAGTTGGTC 57.548 34.615 14.72 10.17 0.00 4.02
2825 2913 6.953101 TGTATGCCTCTTATTAAGTTGGTCA 58.047 36.000 14.72 13.43 0.00 4.02
2826 2914 7.398829 TGTATGCCTCTTATTAAGTTGGTCAA 58.601 34.615 14.72 0.00 0.00 3.18
2827 2915 7.885922 TGTATGCCTCTTATTAAGTTGGTCAAA 59.114 33.333 14.72 4.97 0.00 2.69
2828 2916 7.961326 ATGCCTCTTATTAAGTTGGTCAAAT 57.039 32.000 14.72 0.00 0.00 2.32
2829 2917 7.775053 TGCCTCTTATTAAGTTGGTCAAATT 57.225 32.000 14.72 2.10 32.98 1.82
2830 2918 8.871629 TGCCTCTTATTAAGTTGGTCAAATTA 57.128 30.769 14.72 0.28 30.75 1.40
2831 2919 9.303116 TGCCTCTTATTAAGTTGGTCAAATTAA 57.697 29.630 15.45 15.45 42.49 1.40
2832 2920 9.569167 GCCTCTTATTAAGTTGGTCAAATTAAC 57.431 33.333 15.42 2.16 41.57 2.01
2841 2929 7.833285 AGTTGGTCAAATTAACAACCTATGT 57.167 32.000 5.67 0.00 46.82 2.29
2842 2930 8.927675 AGTTGGTCAAATTAACAACCTATGTA 57.072 30.769 5.67 0.00 42.99 2.29
2843 2931 9.528489 AGTTGGTCAAATTAACAACCTATGTAT 57.472 29.630 5.67 0.00 42.99 2.29
2846 2934 9.100554 TGGTCAAATTAACAACCTATGTATACG 57.899 33.333 0.00 0.00 42.99 3.06
2847 2935 9.101655 GGTCAAATTAACAACCTATGTATACGT 57.898 33.333 2.56 2.56 42.99 3.57
2848 2936 9.910511 GTCAAATTAACAACCTATGTATACGTG 57.089 33.333 7.89 0.00 42.99 4.49
2849 2937 8.605746 TCAAATTAACAACCTATGTATACGTGC 58.394 33.333 7.89 0.00 42.99 5.34
2850 2938 8.391859 CAAATTAACAACCTATGTATACGTGCA 58.608 33.333 7.89 0.00 42.99 4.57
2851 2939 8.495361 AATTAACAACCTATGTATACGTGCAA 57.505 30.769 7.89 0.00 42.99 4.08
2852 2940 7.528481 TTAACAACCTATGTATACGTGCAAG 57.472 36.000 7.89 0.00 42.99 4.01
2853 2941 5.333299 ACAACCTATGTATACGTGCAAGA 57.667 39.130 6.65 0.00 41.63 3.02
2854 2942 5.107133 ACAACCTATGTATACGTGCAAGAC 58.893 41.667 6.65 0.00 41.63 3.01
2855 2943 5.105473 ACAACCTATGTATACGTGCAAGACT 60.105 40.000 6.65 0.00 41.63 3.24
2856 2944 5.593679 ACCTATGTATACGTGCAAGACTT 57.406 39.130 6.65 0.00 0.00 3.01
2857 2945 5.348986 ACCTATGTATACGTGCAAGACTTG 58.651 41.667 11.02 11.02 0.00 3.16
2858 2946 5.105473 ACCTATGTATACGTGCAAGACTTGT 60.105 40.000 16.39 0.00 0.00 3.16
2859 2947 6.095860 ACCTATGTATACGTGCAAGACTTGTA 59.904 38.462 16.39 9.51 0.00 2.41
2860 2948 6.976349 CCTATGTATACGTGCAAGACTTGTAA 59.024 38.462 16.39 3.08 0.00 2.41
2861 2949 7.490079 CCTATGTATACGTGCAAGACTTGTAAA 59.510 37.037 16.39 2.40 0.00 2.01
2862 2950 6.456447 TGTATACGTGCAAGACTTGTAAAC 57.544 37.500 16.39 11.23 0.00 2.01
2863 2951 6.218019 TGTATACGTGCAAGACTTGTAAACT 58.782 36.000 16.39 1.27 0.00 2.66
2864 2952 3.944422 ACGTGCAAGACTTGTAAACTG 57.056 42.857 16.39 10.73 0.00 3.16
2865 2953 2.612212 ACGTGCAAGACTTGTAAACTGG 59.388 45.455 16.39 3.28 0.00 4.00
2866 2954 2.032030 CGTGCAAGACTTGTAAACTGGG 60.032 50.000 16.39 0.00 0.00 4.45
2867 2955 3.211045 GTGCAAGACTTGTAAACTGGGA 58.789 45.455 16.39 0.00 0.00 4.37
2868 2956 3.251004 GTGCAAGACTTGTAAACTGGGAG 59.749 47.826 16.39 0.00 0.00 4.30
2869 2957 2.814336 GCAAGACTTGTAAACTGGGAGG 59.186 50.000 16.39 0.00 0.00 4.30
2870 2958 3.412386 CAAGACTTGTAAACTGGGAGGG 58.588 50.000 7.05 0.00 0.00 4.30
2871 2959 2.986050 AGACTTGTAAACTGGGAGGGA 58.014 47.619 0.00 0.00 0.00 4.20
2872 2960 2.907042 AGACTTGTAAACTGGGAGGGAG 59.093 50.000 0.00 0.00 0.00 4.30
2873 2961 1.985895 ACTTGTAAACTGGGAGGGAGG 59.014 52.381 0.00 0.00 0.00 4.30
2874 2962 1.282157 CTTGTAAACTGGGAGGGAGGG 59.718 57.143 0.00 0.00 0.00 4.30
2875 2963 0.494551 TGTAAACTGGGAGGGAGGGA 59.505 55.000 0.00 0.00 0.00 4.20
2876 2964 1.132332 TGTAAACTGGGAGGGAGGGAA 60.132 52.381 0.00 0.00 0.00 3.97
2877 2965 2.206223 GTAAACTGGGAGGGAGGGAAT 58.794 52.381 0.00 0.00 0.00 3.01
2878 2966 2.680439 AAACTGGGAGGGAGGGAATA 57.320 50.000 0.00 0.00 0.00 1.75
2879 2967 2.680439 AACTGGGAGGGAGGGAATAA 57.320 50.000 0.00 0.00 0.00 1.40
2880 2968 1.894699 ACTGGGAGGGAGGGAATAAC 58.105 55.000 0.00 0.00 0.00 1.89
2881 2969 1.369983 ACTGGGAGGGAGGGAATAACT 59.630 52.381 0.00 0.00 0.00 2.24
2882 2970 2.595380 ACTGGGAGGGAGGGAATAACTA 59.405 50.000 0.00 0.00 0.00 2.24
2883 2971 3.243724 CTGGGAGGGAGGGAATAACTAG 58.756 54.545 0.00 0.00 0.00 2.57
2884 2972 2.869689 TGGGAGGGAGGGAATAACTAGA 59.130 50.000 0.00 0.00 0.00 2.43
2885 2973 3.276578 TGGGAGGGAGGGAATAACTAGAA 59.723 47.826 0.00 0.00 0.00 2.10
2886 2974 3.904965 GGGAGGGAGGGAATAACTAGAAG 59.095 52.174 0.00 0.00 0.00 2.85
2887 2975 4.388804 GGGAGGGAGGGAATAACTAGAAGA 60.389 50.000 0.00 0.00 0.00 2.87
2888 2976 5.407936 GGAGGGAGGGAATAACTAGAAGAT 58.592 45.833 0.00 0.00 0.00 2.40
2889 2977 6.470420 GGGAGGGAGGGAATAACTAGAAGATA 60.470 46.154 0.00 0.00 0.00 1.98
2890 2978 7.193338 GGAGGGAGGGAATAACTAGAAGATAT 58.807 42.308 0.00 0.00 0.00 1.63
2891 2979 7.125053 GGAGGGAGGGAATAACTAGAAGATATG 59.875 44.444 0.00 0.00 0.00 1.78
2892 2980 7.549141 AGGGAGGGAATAACTAGAAGATATGT 58.451 38.462 0.00 0.00 0.00 2.29
2893 2981 8.689054 AGGGAGGGAATAACTAGAAGATATGTA 58.311 37.037 0.00 0.00 0.00 2.29
2894 2982 9.322769 GGGAGGGAATAACTAGAAGATATGTAA 57.677 37.037 0.00 0.00 0.00 2.41
2927 3015 4.881273 TCCAATAGAAATGTGGATTGACCG 59.119 41.667 0.00 0.00 42.61 4.79
2928 3016 4.036734 CCAATAGAAATGTGGATTGACCGG 59.963 45.833 0.00 0.00 42.61 5.28
2929 3017 1.463674 AGAAATGTGGATTGACCGGC 58.536 50.000 0.00 0.00 42.61 6.13
2930 3018 0.455815 GAAATGTGGATTGACCGGCC 59.544 55.000 0.00 0.00 42.61 6.13
2931 3019 0.970427 AAATGTGGATTGACCGGCCC 60.970 55.000 0.00 0.00 42.61 5.80
2932 3020 1.863155 AATGTGGATTGACCGGCCCT 61.863 55.000 0.00 0.00 42.61 5.19
2933 3021 2.124695 GTGGATTGACCGGCCCTC 60.125 66.667 0.00 0.00 42.61 4.30
2934 3022 3.407967 TGGATTGACCGGCCCTCC 61.408 66.667 0.00 3.40 42.61 4.30
2935 3023 3.407967 GGATTGACCGGCCCTCCA 61.408 66.667 0.00 0.00 0.00 3.86
2936 3024 2.124695 GATTGACCGGCCCTCCAC 60.125 66.667 0.00 0.00 0.00 4.02
2937 3025 2.933287 ATTGACCGGCCCTCCACA 60.933 61.111 0.00 0.00 0.00 4.17
2938 3026 2.270874 GATTGACCGGCCCTCCACAT 62.271 60.000 0.00 0.00 0.00 3.21
2939 3027 2.270874 ATTGACCGGCCCTCCACATC 62.271 60.000 0.00 0.00 0.00 3.06
2940 3028 3.399181 GACCGGCCCTCCACATCA 61.399 66.667 0.00 0.00 0.00 3.07
2941 3029 2.692368 ACCGGCCCTCCACATCAT 60.692 61.111 0.00 0.00 0.00 2.45
2942 3030 1.383943 ACCGGCCCTCCACATCATA 60.384 57.895 0.00 0.00 0.00 2.15
2943 3031 0.768221 ACCGGCCCTCCACATCATAT 60.768 55.000 0.00 0.00 0.00 1.78
2944 3032 0.401738 CCGGCCCTCCACATCATATT 59.598 55.000 0.00 0.00 0.00 1.28
2945 3033 1.202927 CCGGCCCTCCACATCATATTT 60.203 52.381 0.00 0.00 0.00 1.40
2946 3034 2.039746 CCGGCCCTCCACATCATATTTA 59.960 50.000 0.00 0.00 0.00 1.40
2947 3035 3.308402 CCGGCCCTCCACATCATATTTAT 60.308 47.826 0.00 0.00 0.00 1.40
2948 3036 4.335416 CGGCCCTCCACATCATATTTATT 58.665 43.478 0.00 0.00 0.00 1.40
2949 3037 4.156556 CGGCCCTCCACATCATATTTATTG 59.843 45.833 0.00 0.00 0.00 1.90
2950 3038 4.463891 GGCCCTCCACATCATATTTATTGG 59.536 45.833 0.00 0.00 0.00 3.16
2951 3039 5.324409 GCCCTCCACATCATATTTATTGGA 58.676 41.667 0.00 0.00 0.00 3.53
2952 3040 5.416952 GCCCTCCACATCATATTTATTGGAG 59.583 44.000 8.24 8.24 46.60 3.86
2953 3041 6.546484 CCCTCCACATCATATTTATTGGAGT 58.454 40.000 13.10 0.00 45.92 3.85
2954 3042 6.432162 CCCTCCACATCATATTTATTGGAGTG 59.568 42.308 13.10 0.00 45.92 3.51
2955 3043 6.072286 CCTCCACATCATATTTATTGGAGTGC 60.072 42.308 13.10 0.00 45.92 4.40
2956 3044 6.604171 TCCACATCATATTTATTGGAGTGCT 58.396 36.000 0.00 0.00 0.00 4.40
2957 3045 6.487668 TCCACATCATATTTATTGGAGTGCTG 59.512 38.462 0.00 0.00 0.00 4.41
2958 3046 6.294342 CCACATCATATTTATTGGAGTGCTGG 60.294 42.308 0.00 0.00 0.00 4.85
2959 3047 5.242393 ACATCATATTTATTGGAGTGCTGGC 59.758 40.000 0.00 0.00 0.00 4.85
2960 3048 4.144297 TCATATTTATTGGAGTGCTGGCC 58.856 43.478 0.00 0.00 0.00 5.36
2961 3049 1.780503 ATTTATTGGAGTGCTGGCCC 58.219 50.000 0.00 0.00 0.00 5.80
2962 3050 0.407528 TTTATTGGAGTGCTGGCCCA 59.592 50.000 0.00 0.00 0.00 5.36
2963 3051 0.407528 TTATTGGAGTGCTGGCCCAA 59.592 50.000 0.00 0.00 43.25 4.12
2964 3052 1.389327 ATTGGAGTGCTGGCCCAAT 59.611 52.632 0.00 8.17 43.62 3.16
2965 3053 0.630673 ATTGGAGTGCTGGCCCAATA 59.369 50.000 0.00 0.00 45.76 1.90
2966 3054 0.323360 TTGGAGTGCTGGCCCAATAC 60.323 55.000 0.00 0.00 35.25 1.89
2967 3055 1.302949 GGAGTGCTGGCCCAATACA 59.697 57.895 0.00 0.00 0.00 2.29
2968 3056 0.106519 GGAGTGCTGGCCCAATACAT 60.107 55.000 0.00 0.00 0.00 2.29
2969 3057 1.686115 GGAGTGCTGGCCCAATACATT 60.686 52.381 0.00 0.00 0.00 2.71
2970 3058 1.406539 GAGTGCTGGCCCAATACATTG 59.593 52.381 0.00 0.00 37.52 2.82
2971 3059 1.185315 GTGCTGGCCCAATACATTGT 58.815 50.000 0.00 0.00 36.06 2.71
2972 3060 2.025416 AGTGCTGGCCCAATACATTGTA 60.025 45.455 0.00 0.00 36.06 2.41
2973 3061 2.099098 GTGCTGGCCCAATACATTGTAC 59.901 50.000 0.00 0.00 36.06 2.90
2974 3062 2.291217 TGCTGGCCCAATACATTGTACA 60.291 45.455 0.00 0.00 36.06 2.90
2975 3063 2.099098 GCTGGCCCAATACATTGTACAC 59.901 50.000 0.00 0.00 36.06 2.90
2976 3064 3.620488 CTGGCCCAATACATTGTACACT 58.380 45.455 0.00 0.00 36.06 3.55
2977 3065 4.016444 CTGGCCCAATACATTGTACACTT 58.984 43.478 0.00 0.00 36.06 3.16
2978 3066 4.013728 TGGCCCAATACATTGTACACTTC 58.986 43.478 0.00 0.00 36.06 3.01
2979 3067 3.380320 GGCCCAATACATTGTACACTTCC 59.620 47.826 0.00 0.00 36.06 3.46
2980 3068 3.064820 GCCCAATACATTGTACACTTCCG 59.935 47.826 0.00 0.00 36.06 4.30
2981 3069 4.258543 CCCAATACATTGTACACTTCCGT 58.741 43.478 0.00 0.00 36.06 4.69
2982 3070 5.421277 CCCAATACATTGTACACTTCCGTA 58.579 41.667 0.00 0.00 36.06 4.02
2983 3071 5.875910 CCCAATACATTGTACACTTCCGTAA 59.124 40.000 0.00 0.00 36.06 3.18
2984 3072 6.183360 CCCAATACATTGTACACTTCCGTAAC 60.183 42.308 0.00 0.00 36.06 2.50
2985 3073 6.369340 CCAATACATTGTACACTTCCGTAACA 59.631 38.462 0.00 0.00 36.06 2.41
2986 3074 7.412563 CCAATACATTGTACACTTCCGTAACAG 60.413 40.741 0.00 0.00 36.06 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.754543 TGGATGCACACACACATATATTG 57.245 39.130 0.00 0.00 0.00 1.90
32 33 2.173519 ACCCAAACCTCTGCATCAATG 58.826 47.619 0.00 0.00 0.00 2.82
102 110 9.942850 AATTGTTAAATAAGCTAGCAATTTGGT 57.057 25.926 26.19 6.33 37.05 3.67
197 205 4.335416 TGCAACTTTAGGAGCAAGCTAAT 58.665 39.130 0.00 0.00 33.48 1.73
206 214 6.426328 CAGATATAGGCTTGCAACTTTAGGAG 59.574 42.308 0.00 0.00 0.00 3.69
292 300 1.003118 TCACCTGTTCCCCTTGATTCG 59.997 52.381 0.00 0.00 0.00 3.34
323 331 6.627395 TTTCTTGCATTCCTTTCTTCGTTA 57.373 33.333 0.00 0.00 0.00 3.18
350 358 5.673514 TCGAAGTTAAACAGTACACCCTTT 58.326 37.500 0.00 0.00 0.00 3.11
503 515 3.630312 TGCGGGCTAATTTTATCTGGTTC 59.370 43.478 0.00 0.00 0.00 3.62
650 671 1.546029 GACTTTGGACATTTGGAGCCC 59.454 52.381 0.00 0.00 0.00 5.19
739 762 8.657712 AGTTTATGTAACTTGTCCTAGAAAGGT 58.342 33.333 0.00 0.00 44.73 3.50
878 901 1.489649 AGTGGATGGATTGAGCTGGAG 59.510 52.381 0.00 0.00 0.00 3.86
879 902 1.588239 AGTGGATGGATTGAGCTGGA 58.412 50.000 0.00 0.00 0.00 3.86
880 903 2.437281 AGTAGTGGATGGATTGAGCTGG 59.563 50.000 0.00 0.00 0.00 4.85
881 904 3.834489 AGTAGTGGATGGATTGAGCTG 57.166 47.619 0.00 0.00 0.00 4.24
882 905 5.211973 TCTAAGTAGTGGATGGATTGAGCT 58.788 41.667 0.00 0.00 0.00 4.09
956 985 1.560860 GCAACGTGAGGAGAGTGTGC 61.561 60.000 0.00 0.00 0.00 4.57
1179 1215 4.899239 CCGGCATCAGCGACCTCC 62.899 72.222 0.00 0.00 43.41 4.30
1245 1281 4.689549 TCCTCGGGCTCGTTGGGA 62.690 66.667 17.72 15.09 37.69 4.37
1358 1394 2.996168 GAACTCCTGCTGTGCCGTGT 62.996 60.000 0.00 0.00 0.00 4.49
1479 1515 1.071567 GCGACGTGAAGTAGAGCACC 61.072 60.000 0.00 0.00 0.00 5.01
1515 1551 2.697761 GGAGCAGTCCTCGTGCGTA 61.698 63.158 0.00 0.00 46.06 4.42
1679 1715 4.069232 CGAACAGGCTCGGCAGGA 62.069 66.667 0.00 0.00 35.14 3.86
1725 1761 4.012811 TGCAGCCGCTTCAGCTCT 62.013 61.111 0.00 0.00 38.95 4.09
1870 1906 2.039405 CCTCGTCGTCCTCCTCGTT 61.039 63.158 0.00 0.00 0.00 3.85
1875 1911 3.507009 CCGTCCTCGTCGTCCTCC 61.507 72.222 0.00 0.00 35.01 4.30
1920 1962 3.958147 CTCTGTGCACCGCCGGAAT 62.958 63.158 11.71 0.00 0.00 3.01
1935 1977 1.664965 GCCGTTCTCGTTGCACTCT 60.665 57.895 0.00 0.00 35.01 3.24
2058 2100 0.584541 CGCGAAAAACACACGAACGT 60.585 50.000 0.00 0.00 0.00 3.99
2062 2104 0.931702 ATCACGCGAAAAACACACGA 59.068 45.000 15.93 0.00 0.00 4.35
2065 2107 2.710760 GTTGATCACGCGAAAAACACA 58.289 42.857 15.93 0.24 0.00 3.72
2103 2148 4.627035 TCGCAGACATACATGAAGAAACAG 59.373 41.667 0.00 0.00 0.00 3.16
2110 2155 5.007921 CCATTGAATCGCAGACATACATGAA 59.992 40.000 0.00 0.00 42.51 2.57
2161 2206 2.485479 GGACACCACATGAGTCAACAGT 60.485 50.000 0.00 0.00 34.04 3.55
2162 2207 2.146342 GGACACCACATGAGTCAACAG 58.854 52.381 0.00 0.00 34.04 3.16
2163 2208 1.488393 TGGACACCACATGAGTCAACA 59.512 47.619 0.00 0.00 34.04 3.33
2164 2209 2.254546 TGGACACCACATGAGTCAAC 57.745 50.000 0.00 0.00 34.04 3.18
2270 2324 2.342648 GGACCAGTCCGCGAAACT 59.657 61.111 8.23 8.16 40.36 2.66
2278 2332 1.374758 CAGCAAGTCGGACCAGTCC 60.375 63.158 6.77 6.77 46.18 3.85
2317 2371 1.521423 CGCGCCTACACTATGTTAAGC 59.479 52.381 0.00 0.00 0.00 3.09
2318 2372 2.805845 ACGCGCCTACACTATGTTAAG 58.194 47.619 5.73 0.00 0.00 1.85
2319 2373 2.945447 ACGCGCCTACACTATGTTAA 57.055 45.000 5.73 0.00 0.00 2.01
2320 2374 2.287188 GCTACGCGCCTACACTATGTTA 60.287 50.000 5.73 0.00 0.00 2.41
2322 2376 0.030369 GCTACGCGCCTACACTATGT 59.970 55.000 5.73 0.00 0.00 2.29
2357 2428 2.903547 GCGCCGGCTTTGAACAGAA 61.904 57.895 26.68 0.00 35.83 3.02
2419 2490 2.912295 TCCAATTGTCCTGATCCTGTGA 59.088 45.455 4.43 0.00 0.00 3.58
2424 2495 2.425143 TGCTCCAATTGTCCTGATCC 57.575 50.000 4.43 0.00 0.00 3.36
2452 2523 3.104843 TGGAAATTTTTGGTTGGAGCG 57.895 42.857 0.00 0.00 0.00 5.03
2497 2572 7.107639 TGATGATTGATCTACAAACTACGGA 57.892 36.000 0.00 0.00 42.03 4.69
2531 2606 2.549349 GGCTTGTCCGTTTCCACTAGAA 60.549 50.000 0.00 0.00 0.00 2.10
2532 2607 1.001633 GGCTTGTCCGTTTCCACTAGA 59.998 52.381 0.00 0.00 0.00 2.43
2533 2608 1.002087 AGGCTTGTCCGTTTCCACTAG 59.998 52.381 0.00 0.00 40.77 2.57
2565 2653 6.108687 CACCATCTAGCACTCTGAAATTACA 58.891 40.000 0.00 0.00 0.00 2.41
2566 2654 5.007136 GCACCATCTAGCACTCTGAAATTAC 59.993 44.000 0.00 0.00 0.00 1.89
2567 2655 5.118990 GCACCATCTAGCACTCTGAAATTA 58.881 41.667 0.00 0.00 0.00 1.40
2569 2657 3.539604 GCACCATCTAGCACTCTGAAAT 58.460 45.455 0.00 0.00 0.00 2.17
2570 2658 2.355108 GGCACCATCTAGCACTCTGAAA 60.355 50.000 0.00 0.00 0.00 2.69
2571 2659 1.208052 GGCACCATCTAGCACTCTGAA 59.792 52.381 0.00 0.00 0.00 3.02
2572 2660 0.826715 GGCACCATCTAGCACTCTGA 59.173 55.000 0.00 0.00 0.00 3.27
2573 2661 3.376218 GGCACCATCTAGCACTCTG 57.624 57.895 0.00 0.00 0.00 3.35
2590 2678 3.429141 CACAGCAAGCGAGCAGGG 61.429 66.667 6.21 0.00 36.85 4.45
2591 2679 3.429141 CCACAGCAAGCGAGCAGG 61.429 66.667 6.21 1.56 36.85 4.85
2592 2680 3.429141 CCCACAGCAAGCGAGCAG 61.429 66.667 6.21 0.51 36.85 4.24
2593 2681 2.753009 AATCCCACAGCAAGCGAGCA 62.753 55.000 6.21 0.00 36.85 4.26
2594 2682 0.744414 TAATCCCACAGCAAGCGAGC 60.744 55.000 0.00 0.00 0.00 5.03
2595 2683 1.737838 TTAATCCCACAGCAAGCGAG 58.262 50.000 0.00 0.00 0.00 5.03
2596 2684 2.083774 CTTTAATCCCACAGCAAGCGA 58.916 47.619 0.00 0.00 0.00 4.93
2597 2685 1.812571 ACTTTAATCCCACAGCAAGCG 59.187 47.619 0.00 0.00 0.00 4.68
2598 2686 2.819608 TGACTTTAATCCCACAGCAAGC 59.180 45.455 0.00 0.00 0.00 4.01
2599 2687 4.676196 GCATGACTTTAATCCCACAGCAAG 60.676 45.833 0.00 0.00 0.00 4.01
2600 2688 3.193267 GCATGACTTTAATCCCACAGCAA 59.807 43.478 0.00 0.00 0.00 3.91
2601 2689 2.754552 GCATGACTTTAATCCCACAGCA 59.245 45.455 0.00 0.00 0.00 4.41
2602 2690 2.754552 TGCATGACTTTAATCCCACAGC 59.245 45.455 0.00 0.00 0.00 4.40
2603 2691 4.735578 GCATGCATGACTTTAATCCCACAG 60.736 45.833 30.64 0.00 0.00 3.66
2604 2692 3.130869 GCATGCATGACTTTAATCCCACA 59.869 43.478 30.64 0.00 0.00 4.17
2605 2693 3.709987 GCATGCATGACTTTAATCCCAC 58.290 45.455 30.64 3.61 0.00 4.61
2606 2694 2.358582 CGCATGCATGACTTTAATCCCA 59.641 45.455 30.64 0.00 0.00 4.37
2607 2695 2.618241 TCGCATGCATGACTTTAATCCC 59.382 45.455 30.64 7.19 0.00 3.85
2608 2696 3.561310 TCTCGCATGCATGACTTTAATCC 59.439 43.478 30.64 7.93 0.00 3.01
2609 2697 4.801147 TCTCGCATGCATGACTTTAATC 57.199 40.909 30.64 8.66 0.00 1.75
2610 2698 4.818005 TCATCTCGCATGCATGACTTTAAT 59.182 37.500 30.64 11.64 0.00 1.40
2611 2699 4.190772 TCATCTCGCATGCATGACTTTAA 58.809 39.130 30.64 9.83 0.00 1.52
2612 2700 3.795877 TCATCTCGCATGCATGACTTTA 58.204 40.909 30.64 10.90 0.00 1.85
2613 2701 2.612672 CTCATCTCGCATGCATGACTTT 59.387 45.455 30.64 7.28 0.00 2.66
2614 2702 2.210961 CTCATCTCGCATGCATGACTT 58.789 47.619 30.64 6.55 0.00 3.01
2615 2703 1.540580 CCTCATCTCGCATGCATGACT 60.541 52.381 30.64 6.01 0.00 3.41
2616 2704 0.866427 CCTCATCTCGCATGCATGAC 59.134 55.000 30.64 19.14 0.00 3.06
2617 2705 0.466963 ACCTCATCTCGCATGCATGA 59.533 50.000 30.64 17.42 0.00 3.07
2618 2706 2.159327 TACCTCATCTCGCATGCATG 57.841 50.000 22.70 22.70 0.00 4.06
2619 2707 2.038164 ACATACCTCATCTCGCATGCAT 59.962 45.455 19.57 0.00 0.00 3.96
2620 2708 1.413812 ACATACCTCATCTCGCATGCA 59.586 47.619 19.57 4.02 0.00 3.96
2621 2709 2.160822 ACATACCTCATCTCGCATGC 57.839 50.000 7.91 7.91 0.00 4.06
2622 2710 5.928264 TCATTTACATACCTCATCTCGCATG 59.072 40.000 0.00 0.00 0.00 4.06
2623 2711 5.928839 GTCATTTACATACCTCATCTCGCAT 59.071 40.000 0.00 0.00 0.00 4.73
2624 2712 5.069119 AGTCATTTACATACCTCATCTCGCA 59.931 40.000 0.00 0.00 0.00 5.10
2625 2713 5.403766 CAGTCATTTACATACCTCATCTCGC 59.596 44.000 0.00 0.00 0.00 5.03
2626 2714 5.403766 GCAGTCATTTACATACCTCATCTCG 59.596 44.000 0.00 0.00 0.00 4.04
2627 2715 6.423302 CAGCAGTCATTTACATACCTCATCTC 59.577 42.308 0.00 0.00 0.00 2.75
2628 2716 6.286758 CAGCAGTCATTTACATACCTCATCT 58.713 40.000 0.00 0.00 0.00 2.90
2629 2717 5.049818 GCAGCAGTCATTTACATACCTCATC 60.050 44.000 0.00 0.00 0.00 2.92
2630 2718 4.818546 GCAGCAGTCATTTACATACCTCAT 59.181 41.667 0.00 0.00 0.00 2.90
2631 2719 4.191544 GCAGCAGTCATTTACATACCTCA 58.808 43.478 0.00 0.00 0.00 3.86
2632 2720 4.034510 GTGCAGCAGTCATTTACATACCTC 59.965 45.833 0.00 0.00 0.00 3.85
2633 2721 3.941483 GTGCAGCAGTCATTTACATACCT 59.059 43.478 0.00 0.00 0.00 3.08
2634 2722 3.065371 GGTGCAGCAGTCATTTACATACC 59.935 47.826 11.86 0.00 0.00 2.73
2635 2723 3.242413 CGGTGCAGCAGTCATTTACATAC 60.242 47.826 17.33 0.00 0.00 2.39
2636 2724 2.935849 CGGTGCAGCAGTCATTTACATA 59.064 45.455 17.33 0.00 0.00 2.29
2637 2725 1.739466 CGGTGCAGCAGTCATTTACAT 59.261 47.619 17.33 0.00 0.00 2.29
2638 2726 1.155889 CGGTGCAGCAGTCATTTACA 58.844 50.000 17.33 0.00 0.00 2.41
2639 2727 1.438651 TCGGTGCAGCAGTCATTTAC 58.561 50.000 17.33 0.00 0.00 2.01
2640 2728 2.177394 TTCGGTGCAGCAGTCATTTA 57.823 45.000 17.33 0.00 0.00 1.40
2641 2729 1.001378 GTTTCGGTGCAGCAGTCATTT 60.001 47.619 17.33 0.00 0.00 2.32
2642 2730 0.593128 GTTTCGGTGCAGCAGTCATT 59.407 50.000 17.33 0.00 0.00 2.57
2643 2731 0.534877 TGTTTCGGTGCAGCAGTCAT 60.535 50.000 17.33 0.00 0.00 3.06
2644 2732 0.534877 ATGTTTCGGTGCAGCAGTCA 60.535 50.000 17.33 9.32 0.00 3.41
2645 2733 0.110056 CATGTTTCGGTGCAGCAGTC 60.110 55.000 17.33 3.75 0.00 3.51
2646 2734 0.534877 TCATGTTTCGGTGCAGCAGT 60.535 50.000 17.33 0.00 0.00 4.40
2647 2735 0.592637 TTCATGTTTCGGTGCAGCAG 59.407 50.000 17.33 8.96 0.00 4.24
2648 2736 1.246649 ATTCATGTTTCGGTGCAGCA 58.753 45.000 17.33 0.00 0.00 4.41
2649 2737 3.171277 GTTATTCATGTTTCGGTGCAGC 58.829 45.455 5.64 5.64 0.00 5.25
2650 2738 4.158384 GTGTTATTCATGTTTCGGTGCAG 58.842 43.478 0.00 0.00 0.00 4.41
2651 2739 3.057876 GGTGTTATTCATGTTTCGGTGCA 60.058 43.478 0.00 0.00 0.00 4.57
2652 2740 3.057876 TGGTGTTATTCATGTTTCGGTGC 60.058 43.478 0.00 0.00 0.00 5.01
2653 2741 4.757799 TGGTGTTATTCATGTTTCGGTG 57.242 40.909 0.00 0.00 0.00 4.94
2654 2742 5.776173 TTTGGTGTTATTCATGTTTCGGT 57.224 34.783 0.00 0.00 0.00 4.69
2655 2743 8.925161 ATAATTTGGTGTTATTCATGTTTCGG 57.075 30.769 0.00 0.00 0.00 4.30
2666 2754 9.880157 ACGTGAGTACTTATAATTTGGTGTTAT 57.120 29.630 0.00 0.00 46.88 1.89
2686 2774 4.595198 TGACGACTAAGATACACGTGAG 57.405 45.455 25.01 10.49 37.32 3.51
2687 2775 5.556355 ATTGACGACTAAGATACACGTGA 57.444 39.130 25.01 6.34 37.32 4.35
2688 2776 6.627690 AAATTGACGACTAAGATACACGTG 57.372 37.500 15.48 15.48 37.32 4.49
2689 2777 8.025445 AGTTAAATTGACGACTAAGATACACGT 58.975 33.333 0.00 0.00 39.82 4.49
2690 2778 8.390854 AGTTAAATTGACGACTAAGATACACG 57.609 34.615 0.00 0.00 0.00 4.49
2798 2886 9.555727 GACCAACTTAATAAGAGGCATACATTA 57.444 33.333 7.06 0.00 32.88 1.90
2799 2887 8.052748 TGACCAACTTAATAAGAGGCATACATT 58.947 33.333 7.06 0.00 32.88 2.71
2800 2888 7.573710 TGACCAACTTAATAAGAGGCATACAT 58.426 34.615 7.06 0.00 32.88 2.29
2801 2889 6.953101 TGACCAACTTAATAAGAGGCATACA 58.047 36.000 7.06 5.05 32.88 2.29
2802 2890 7.859325 TTGACCAACTTAATAAGAGGCATAC 57.141 36.000 7.06 2.98 32.88 2.39
2803 2891 9.474313 AATTTGACCAACTTAATAAGAGGCATA 57.526 29.630 7.06 6.64 32.88 3.14
2804 2892 7.961326 ATTTGACCAACTTAATAAGAGGCAT 57.039 32.000 7.06 0.00 32.88 4.40
2805 2893 7.775053 AATTTGACCAACTTAATAAGAGGCA 57.225 32.000 7.06 7.77 32.88 4.75
2806 2894 9.569167 GTTAATTTGACCAACTTAATAAGAGGC 57.431 33.333 7.06 5.68 31.31 4.70
2815 2903 9.357161 ACATAGGTTGTTAATTTGACCAACTTA 57.643 29.630 0.00 0.00 37.80 2.24
2816 2904 8.245195 ACATAGGTTGTTAATTTGACCAACTT 57.755 30.769 0.00 0.00 37.80 2.66
2817 2905 7.833285 ACATAGGTTGTTAATTTGACCAACT 57.167 32.000 0.00 0.00 37.80 3.16
2820 2908 9.100554 CGTATACATAGGTTGTTAATTTGACCA 57.899 33.333 3.32 0.00 39.87 4.02
2821 2909 9.101655 ACGTATACATAGGTTGTTAATTTGACC 57.898 33.333 3.32 0.00 39.87 4.02
2822 2910 9.910511 CACGTATACATAGGTTGTTAATTTGAC 57.089 33.333 3.32 0.00 39.87 3.18
2823 2911 8.605746 GCACGTATACATAGGTTGTTAATTTGA 58.394 33.333 3.32 0.00 39.87 2.69
2824 2912 8.391859 TGCACGTATACATAGGTTGTTAATTTG 58.608 33.333 3.32 0.00 39.87 2.32
2825 2913 8.495361 TGCACGTATACATAGGTTGTTAATTT 57.505 30.769 3.32 0.00 39.87 1.82
2826 2914 8.495361 TTGCACGTATACATAGGTTGTTAATT 57.505 30.769 3.32 0.00 39.87 1.40
2827 2915 7.982919 TCTTGCACGTATACATAGGTTGTTAAT 59.017 33.333 3.32 0.00 39.87 1.40
2828 2916 7.276218 GTCTTGCACGTATACATAGGTTGTTAA 59.724 37.037 3.32 0.00 39.87 2.01
2829 2917 6.753279 GTCTTGCACGTATACATAGGTTGTTA 59.247 38.462 3.32 0.00 39.87 2.41
2830 2918 5.579511 GTCTTGCACGTATACATAGGTTGTT 59.420 40.000 3.32 0.00 39.87 2.83
2831 2919 5.105473 AGTCTTGCACGTATACATAGGTTGT 60.105 40.000 3.32 0.00 42.62 3.32
2832 2920 5.348986 AGTCTTGCACGTATACATAGGTTG 58.651 41.667 3.32 0.00 29.75 3.77
2833 2921 5.593679 AGTCTTGCACGTATACATAGGTT 57.406 39.130 3.32 0.00 29.75 3.50
2834 2922 5.105473 ACAAGTCTTGCACGTATACATAGGT 60.105 40.000 12.66 0.00 32.13 3.08
2835 2923 5.348986 ACAAGTCTTGCACGTATACATAGG 58.651 41.667 12.66 0.00 0.00 2.57
2836 2924 7.980742 TTACAAGTCTTGCACGTATACATAG 57.019 36.000 12.66 0.00 0.00 2.23
2837 2925 8.030692 AGTTTACAAGTCTTGCACGTATACATA 58.969 33.333 12.66 0.00 0.00 2.29
2838 2926 6.872020 AGTTTACAAGTCTTGCACGTATACAT 59.128 34.615 12.66 0.00 0.00 2.29
2839 2927 6.144886 CAGTTTACAAGTCTTGCACGTATACA 59.855 38.462 12.66 0.00 0.00 2.29
2840 2928 6.400727 CCAGTTTACAAGTCTTGCACGTATAC 60.401 42.308 12.66 3.58 0.00 1.47
2841 2929 5.636121 CCAGTTTACAAGTCTTGCACGTATA 59.364 40.000 12.66 0.00 0.00 1.47
2842 2930 4.451096 CCAGTTTACAAGTCTTGCACGTAT 59.549 41.667 12.66 0.00 0.00 3.06
2843 2931 3.805422 CCAGTTTACAAGTCTTGCACGTA 59.195 43.478 12.66 0.00 0.00 3.57
2844 2932 2.612212 CCAGTTTACAAGTCTTGCACGT 59.388 45.455 12.66 0.00 0.00 4.49
2845 2933 2.032030 CCCAGTTTACAAGTCTTGCACG 60.032 50.000 12.66 4.45 0.00 5.34
2846 2934 3.211045 TCCCAGTTTACAAGTCTTGCAC 58.789 45.455 12.66 7.19 0.00 4.57
2847 2935 3.476552 CTCCCAGTTTACAAGTCTTGCA 58.523 45.455 12.66 0.00 0.00 4.08
2848 2936 2.814336 CCTCCCAGTTTACAAGTCTTGC 59.186 50.000 12.66 0.00 0.00 4.01
2849 2937 3.072476 TCCCTCCCAGTTTACAAGTCTTG 59.928 47.826 11.17 11.17 0.00 3.02
2850 2938 3.323775 TCCCTCCCAGTTTACAAGTCTT 58.676 45.455 0.00 0.00 0.00 3.01
2851 2939 2.907042 CTCCCTCCCAGTTTACAAGTCT 59.093 50.000 0.00 0.00 0.00 3.24
2852 2940 2.027100 CCTCCCTCCCAGTTTACAAGTC 60.027 54.545 0.00 0.00 0.00 3.01
2853 2941 1.985895 CCTCCCTCCCAGTTTACAAGT 59.014 52.381 0.00 0.00 0.00 3.16
2854 2942 1.282157 CCCTCCCTCCCAGTTTACAAG 59.718 57.143 0.00 0.00 0.00 3.16
2855 2943 1.132332 TCCCTCCCTCCCAGTTTACAA 60.132 52.381 0.00 0.00 0.00 2.41
2856 2944 0.494551 TCCCTCCCTCCCAGTTTACA 59.505 55.000 0.00 0.00 0.00 2.41
2857 2945 1.665137 TTCCCTCCCTCCCAGTTTAC 58.335 55.000 0.00 0.00 0.00 2.01
2858 2946 2.680439 ATTCCCTCCCTCCCAGTTTA 57.320 50.000 0.00 0.00 0.00 2.01
2859 2947 2.581246 GTTATTCCCTCCCTCCCAGTTT 59.419 50.000 0.00 0.00 0.00 2.66
2860 2948 2.206223 GTTATTCCCTCCCTCCCAGTT 58.794 52.381 0.00 0.00 0.00 3.16
2861 2949 1.369983 AGTTATTCCCTCCCTCCCAGT 59.630 52.381 0.00 0.00 0.00 4.00
2862 2950 2.198334 AGTTATTCCCTCCCTCCCAG 57.802 55.000 0.00 0.00 0.00 4.45
2863 2951 2.869689 TCTAGTTATTCCCTCCCTCCCA 59.130 50.000 0.00 0.00 0.00 4.37
2864 2952 3.632420 TCTAGTTATTCCCTCCCTCCC 57.368 52.381 0.00 0.00 0.00 4.30
2865 2953 4.817286 TCTTCTAGTTATTCCCTCCCTCC 58.183 47.826 0.00 0.00 0.00 4.30
2866 2954 7.676468 ACATATCTTCTAGTTATTCCCTCCCTC 59.324 40.741 0.00 0.00 0.00 4.30
2867 2955 7.549141 ACATATCTTCTAGTTATTCCCTCCCT 58.451 38.462 0.00 0.00 0.00 4.20
2868 2956 7.800300 ACATATCTTCTAGTTATTCCCTCCC 57.200 40.000 0.00 0.00 0.00 4.30
2904 2992 4.881273 CGGTCAATCCACATTTCTATTGGA 59.119 41.667 0.00 0.00 43.60 3.53
2905 2993 4.036734 CCGGTCAATCCACATTTCTATTGG 59.963 45.833 0.00 0.00 35.57 3.16
2906 2994 4.498009 GCCGGTCAATCCACATTTCTATTG 60.498 45.833 1.90 0.00 35.57 1.90
2907 2995 3.632145 GCCGGTCAATCCACATTTCTATT 59.368 43.478 1.90 0.00 35.57 1.73
2908 2996 3.214328 GCCGGTCAATCCACATTTCTAT 58.786 45.455 1.90 0.00 35.57 1.98
2909 2997 2.639065 GCCGGTCAATCCACATTTCTA 58.361 47.619 1.90 0.00 35.57 2.10
2910 2998 1.463674 GCCGGTCAATCCACATTTCT 58.536 50.000 1.90 0.00 35.57 2.52
2911 2999 0.455815 GGCCGGTCAATCCACATTTC 59.544 55.000 0.00 0.00 35.57 2.17
2912 3000 0.970427 GGGCCGGTCAATCCACATTT 60.970 55.000 9.07 0.00 35.57 2.32
2913 3001 1.379843 GGGCCGGTCAATCCACATT 60.380 57.895 9.07 0.00 35.57 2.71
2914 3002 2.270874 GAGGGCCGGTCAATCCACAT 62.271 60.000 9.07 0.00 35.57 3.21
2915 3003 2.933287 AGGGCCGGTCAATCCACA 60.933 61.111 9.07 0.00 35.57 4.17
2916 3004 2.124695 GAGGGCCGGTCAATCCAC 60.125 66.667 9.07 0.00 35.57 4.02
2917 3005 3.407967 GGAGGGCCGGTCAATCCA 61.408 66.667 21.27 0.00 35.57 3.41
2918 3006 3.407967 TGGAGGGCCGGTCAATCC 61.408 66.667 19.83 19.83 36.79 3.01
2919 3007 2.124695 GTGGAGGGCCGGTCAATC 60.125 66.667 9.07 4.95 36.79 2.67
2920 3008 2.270874 GATGTGGAGGGCCGGTCAAT 62.271 60.000 9.07 0.00 36.79 2.57
2921 3009 2.933287 ATGTGGAGGGCCGGTCAA 60.933 61.111 9.07 0.00 36.79 3.18
2922 3010 3.399181 GATGTGGAGGGCCGGTCA 61.399 66.667 9.07 0.00 36.79 4.02
2923 3011 1.407656 TATGATGTGGAGGGCCGGTC 61.408 60.000 1.90 0.00 36.79 4.79
2924 3012 0.768221 ATATGATGTGGAGGGCCGGT 60.768 55.000 1.90 0.00 36.79 5.28
2925 3013 0.401738 AATATGATGTGGAGGGCCGG 59.598 55.000 0.00 0.00 36.79 6.13
2926 3014 2.276732 AAATATGATGTGGAGGGCCG 57.723 50.000 0.00 0.00 36.79 6.13
2927 3015 4.463891 CCAATAAATATGATGTGGAGGGCC 59.536 45.833 0.00 0.00 0.00 5.80
2928 3016 5.324409 TCCAATAAATATGATGTGGAGGGC 58.676 41.667 0.00 0.00 31.61 5.19
2932 3020 6.487668 CAGCACTCCAATAAATATGATGTGGA 59.512 38.462 0.00 0.00 34.12 4.02
2933 3021 6.294342 CCAGCACTCCAATAAATATGATGTGG 60.294 42.308 0.00 0.00 0.00 4.17
2934 3022 6.675026 CCAGCACTCCAATAAATATGATGTG 58.325 40.000 0.00 0.00 0.00 3.21
2935 3023 5.242393 GCCAGCACTCCAATAAATATGATGT 59.758 40.000 0.00 0.00 0.00 3.06
2936 3024 5.336213 GGCCAGCACTCCAATAAATATGATG 60.336 44.000 0.00 0.00 0.00 3.07
2937 3025 4.768968 GGCCAGCACTCCAATAAATATGAT 59.231 41.667 0.00 0.00 0.00 2.45
2938 3026 4.144297 GGCCAGCACTCCAATAAATATGA 58.856 43.478 0.00 0.00 0.00 2.15
2939 3027 3.256631 GGGCCAGCACTCCAATAAATATG 59.743 47.826 4.39 0.00 0.00 1.78
2940 3028 3.117169 TGGGCCAGCACTCCAATAAATAT 60.117 43.478 0.00 0.00 0.00 1.28
2941 3029 2.243478 TGGGCCAGCACTCCAATAAATA 59.757 45.455 0.00 0.00 0.00 1.40
2942 3030 1.006998 TGGGCCAGCACTCCAATAAAT 59.993 47.619 0.00 0.00 0.00 1.40
2943 3031 0.407528 TGGGCCAGCACTCCAATAAA 59.592 50.000 0.00 0.00 0.00 1.40
2944 3032 0.407528 TTGGGCCAGCACTCCAATAA 59.592 50.000 6.23 0.00 35.83 1.40
2945 3033 0.630673 ATTGGGCCAGCACTCCAATA 59.369 50.000 6.23 0.00 46.03 1.90
2946 3034 1.389327 ATTGGGCCAGCACTCCAAT 59.611 52.632 6.23 0.00 43.93 3.16
2947 3035 0.323360 GTATTGGGCCAGCACTCCAA 60.323 55.000 6.23 0.00 43.62 3.53
2948 3036 1.302949 GTATTGGGCCAGCACTCCA 59.697 57.895 6.23 0.00 0.00 3.86
2949 3037 0.106519 ATGTATTGGGCCAGCACTCC 60.107 55.000 6.23 0.00 0.00 3.85
2950 3038 1.406539 CAATGTATTGGGCCAGCACTC 59.593 52.381 6.23 0.00 34.22 3.51
2951 3039 1.272648 ACAATGTATTGGGCCAGCACT 60.273 47.619 6.23 0.00 41.96 4.40
2952 3040 1.185315 ACAATGTATTGGGCCAGCAC 58.815 50.000 6.23 9.53 41.96 4.40
2953 3041 2.291217 TGTACAATGTATTGGGCCAGCA 60.291 45.455 6.23 8.18 41.96 4.41
2954 3042 2.099098 GTGTACAATGTATTGGGCCAGC 59.901 50.000 6.23 1.81 41.96 4.85
2955 3043 3.620488 AGTGTACAATGTATTGGGCCAG 58.380 45.455 6.23 0.00 41.96 4.85
2956 3044 3.730215 AGTGTACAATGTATTGGGCCA 57.270 42.857 0.00 0.00 41.96 5.36
2957 3045 3.380320 GGAAGTGTACAATGTATTGGGCC 59.620 47.826 0.00 0.00 41.96 5.80
2958 3046 3.064820 CGGAAGTGTACAATGTATTGGGC 59.935 47.826 0.00 2.58 41.96 5.36
2959 3047 4.258543 ACGGAAGTGTACAATGTATTGGG 58.741 43.478 0.00 0.00 46.97 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.