Multiple sequence alignment - TraesCS4B01G287600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G287600 chr4B 100.000 3501 0 0 553 4053 571050144 571046644 0.000000e+00 6466.0
1 TraesCS4B01G287600 chr4B 100.000 209 0 0 1 209 571050696 571050488 1.770000e-103 387.0
2 TraesCS4B01G287600 chr4B 83.246 191 27 3 1467 1656 593422859 593423045 1.940000e-38 171.0
3 TraesCS4B01G287600 chr4D 92.340 3068 115 48 571 3578 457074204 457077211 0.000000e+00 4253.0
4 TraesCS4B01G287600 chr4D 89.855 69 7 0 141 209 457073995 457074063 5.580000e-14 89.8
5 TraesCS4B01G287600 chr4A 88.031 2849 139 88 1155 3908 11297419 11300160 0.000000e+00 3186.0
6 TraesCS4B01G287600 chr4A 94.159 428 8 4 718 1128 11296534 11296961 1.590000e-178 636.0
7 TraesCS4B01G287600 chr4A 100.000 30 0 0 4019 4048 227091257 227091286 5.660000e-04 56.5
8 TraesCS4B01G287600 chr6D 83.495 206 32 2 1515 1719 380800280 380800076 1.490000e-44 191.0
9 TraesCS4B01G287600 chr6A 83.495 206 32 2 1515 1719 522227015 522226811 1.490000e-44 191.0
10 TraesCS4B01G287600 chr6B 83.010 206 33 2 1515 1719 568258599 568258395 6.920000e-43 185.0
11 TraesCS4B01G287600 chr3A 94.595 37 2 0 4013 4049 639483792 639483828 1.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G287600 chr4B 571046644 571050696 4052 True 3426.5 6466 100.0000 1 4053 2 chr4B.!!$R1 4052
1 TraesCS4B01G287600 chr4D 457073995 457077211 3216 False 2171.4 4253 91.0975 141 3578 2 chr4D.!!$F1 3437
2 TraesCS4B01G287600 chr4A 11296534 11300160 3626 False 1911.0 3186 91.0950 718 3908 2 chr4A.!!$F2 3190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.106719 CCCCCAGCGTGATGGTAATT 60.107 55.000 3.16 0.00 38.81 1.40 F
94 95 0.608035 GCCATTTGTCCCGGTTCAGA 60.608 55.000 0.00 0.00 0.00 3.27 F
104 105 0.863799 CCGGTTCAGATGATGATGCG 59.136 55.000 0.00 0.00 37.89 4.73 F
709 714 1.142870 TGCCCTTGGTGTATCATAGCC 59.857 52.381 0.00 0.00 0.00 3.93 F
715 720 1.417517 TGGTGTATCATAGCCCAGCTG 59.582 52.381 6.78 6.78 40.10 4.24 F
2232 2724 0.703466 CGAGTCGCTGTTCGTTTCTC 59.297 55.000 0.00 0.00 39.67 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1777 0.389757 TGCAGCACACGTAGGTACAA 59.610 50.000 0.00 0.0 0.00 2.41 R
1327 1783 1.010935 CAGACCTGCAGCACACGTAG 61.011 60.000 8.66 0.0 0.00 3.51 R
2092 2584 1.061131 GATGACGATTTCGCAGGTGTG 59.939 52.381 0.00 0.0 44.43 3.82 R
2232 2724 0.036952 TCCTCAAAAGGCTCGCTCAG 60.037 55.000 0.00 0.0 43.02 3.35 R
2238 2730 1.482593 TCGATCCTCCTCAAAAGGCTC 59.517 52.381 0.00 0.0 43.02 4.70 R
3937 4534 0.397254 TCCAAGAACCCCCGCAAAAA 60.397 50.000 0.00 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.819652 TGTGCACAGGGCCCACTT 61.820 61.111 27.56 3.79 43.89 3.16
18 19 3.297620 GTGCACAGGGCCCACTTG 61.298 66.667 27.56 16.97 43.89 3.16
20 21 4.982701 GCACAGGGCCCACTTGCT 62.983 66.667 27.56 0.00 36.11 3.91
21 22 2.756400 CACAGGGCCCACTTGCTA 59.244 61.111 27.56 0.00 0.00 3.49
22 23 1.074775 CACAGGGCCCACTTGCTAA 59.925 57.895 27.56 0.00 0.00 3.09
23 24 1.074951 ACAGGGCCCACTTGCTAAC 59.925 57.895 27.56 0.00 0.00 2.34
24 25 1.678970 CAGGGCCCACTTGCTAACC 60.679 63.158 27.56 0.00 0.00 2.85
25 26 2.362503 GGGCCCACTTGCTAACCC 60.363 66.667 19.95 0.00 0.00 4.11
26 27 2.362503 GGCCCACTTGCTAACCCC 60.363 66.667 0.00 0.00 0.00 4.95
27 28 2.362503 GCCCACTTGCTAACCCCC 60.363 66.667 0.00 0.00 0.00 5.40
28 29 3.176297 CCCACTTGCTAACCCCCA 58.824 61.111 0.00 0.00 0.00 4.96
29 30 1.000896 CCCACTTGCTAACCCCCAG 60.001 63.158 0.00 0.00 0.00 4.45
30 31 1.678970 CCACTTGCTAACCCCCAGC 60.679 63.158 0.00 0.00 39.56 4.85
31 32 2.040544 CACTTGCTAACCCCCAGCG 61.041 63.158 0.00 0.00 42.13 5.18
32 33 2.351276 CTTGCTAACCCCCAGCGT 59.649 61.111 0.00 0.00 42.13 5.07
33 34 2.033448 TTGCTAACCCCCAGCGTG 59.967 61.111 0.00 0.00 42.13 5.34
34 35 2.463589 CTTGCTAACCCCCAGCGTGA 62.464 60.000 0.00 0.00 42.13 4.35
35 36 1.847798 TTGCTAACCCCCAGCGTGAT 61.848 55.000 0.00 0.00 42.13 3.06
36 37 1.819632 GCTAACCCCCAGCGTGATG 60.820 63.158 0.00 0.00 0.00 3.07
37 38 1.153168 CTAACCCCCAGCGTGATGG 60.153 63.158 0.00 0.00 40.29 3.51
38 39 1.910580 CTAACCCCCAGCGTGATGGT 61.911 60.000 3.16 0.00 38.81 3.55
39 40 0.618107 TAACCCCCAGCGTGATGGTA 60.618 55.000 3.16 0.00 38.81 3.25
40 41 1.493854 AACCCCCAGCGTGATGGTAA 61.494 55.000 3.16 0.00 38.81 2.85
41 42 1.279025 ACCCCCAGCGTGATGGTAAT 61.279 55.000 3.16 0.00 38.81 1.89
42 43 0.106719 CCCCCAGCGTGATGGTAATT 60.107 55.000 3.16 0.00 38.81 1.40
43 44 1.684869 CCCCCAGCGTGATGGTAATTT 60.685 52.381 3.16 0.00 38.81 1.82
44 45 1.676006 CCCCAGCGTGATGGTAATTTC 59.324 52.381 3.16 0.00 38.81 2.17
45 46 1.676006 CCCAGCGTGATGGTAATTTCC 59.324 52.381 3.16 0.00 38.81 3.13
46 47 2.364632 CCAGCGTGATGGTAATTTCCA 58.635 47.619 6.23 6.23 42.01 3.53
47 48 2.752354 CCAGCGTGATGGTAATTTCCAA 59.248 45.455 7.98 0.00 41.09 3.53
48 49 3.381272 CCAGCGTGATGGTAATTTCCAAT 59.619 43.478 7.98 0.00 41.09 3.16
49 50 4.498009 CCAGCGTGATGGTAATTTCCAATC 60.498 45.833 7.98 7.12 41.09 2.67
50 51 4.336433 CAGCGTGATGGTAATTTCCAATCT 59.664 41.667 7.98 0.00 41.09 2.40
51 52 5.527214 CAGCGTGATGGTAATTTCCAATCTA 59.473 40.000 7.98 0.00 41.09 1.98
52 53 5.527582 AGCGTGATGGTAATTTCCAATCTAC 59.472 40.000 7.98 4.57 41.09 2.59
53 54 5.295787 GCGTGATGGTAATTTCCAATCTACA 59.704 40.000 7.98 2.00 41.09 2.74
54 55 6.715464 CGTGATGGTAATTTCCAATCTACAC 58.285 40.000 7.98 11.43 41.09 2.90
55 56 6.315144 CGTGATGGTAATTTCCAATCTACACA 59.685 38.462 7.98 0.00 41.09 3.72
56 57 7.012327 CGTGATGGTAATTTCCAATCTACACAT 59.988 37.037 7.98 0.00 41.09 3.21
57 58 9.337396 GTGATGGTAATTTCCAATCTACACATA 57.663 33.333 7.98 0.00 41.09 2.29
69 70 9.325248 TCCAATCTACACATATATCCAGATTCA 57.675 33.333 0.00 0.00 31.99 2.57
76 77 7.341805 ACACATATATCCAGATTCATAAGGGC 58.658 38.462 0.00 0.00 0.00 5.19
77 78 6.769822 CACATATATCCAGATTCATAAGGGCC 59.230 42.308 0.00 0.00 0.00 5.80
78 79 6.448061 ACATATATCCAGATTCATAAGGGCCA 59.552 38.462 6.18 0.00 0.00 5.36
79 80 7.129972 ACATATATCCAGATTCATAAGGGCCAT 59.870 37.037 6.18 0.00 0.00 4.40
80 81 4.754411 ATCCAGATTCATAAGGGCCATT 57.246 40.909 8.18 8.18 0.00 3.16
81 82 4.541250 TCCAGATTCATAAGGGCCATTT 57.459 40.909 8.49 1.84 0.00 2.32
82 83 4.217510 TCCAGATTCATAAGGGCCATTTG 58.782 43.478 8.49 6.97 0.00 2.32
83 84 3.962718 CCAGATTCATAAGGGCCATTTGT 59.037 43.478 8.49 0.00 0.00 2.83
84 85 4.038402 CCAGATTCATAAGGGCCATTTGTC 59.962 45.833 8.49 0.00 0.00 3.18
85 86 4.038402 CAGATTCATAAGGGCCATTTGTCC 59.962 45.833 8.49 1.65 0.00 4.02
86 87 2.452600 TCATAAGGGCCATTTGTCCC 57.547 50.000 8.49 0.00 42.94 4.46
90 91 2.283604 GGGCCATTTGTCCCGGTT 60.284 61.111 4.39 0.00 32.00 4.44
91 92 2.348104 GGGCCATTTGTCCCGGTTC 61.348 63.158 4.39 0.00 32.00 3.62
92 93 1.605165 GGCCATTTGTCCCGGTTCA 60.605 57.895 0.00 0.00 0.00 3.18
93 94 1.595093 GGCCATTTGTCCCGGTTCAG 61.595 60.000 0.00 0.00 0.00 3.02
94 95 0.608035 GCCATTTGTCCCGGTTCAGA 60.608 55.000 0.00 0.00 0.00 3.27
95 96 1.955208 GCCATTTGTCCCGGTTCAGAT 60.955 52.381 0.00 0.00 0.00 2.90
96 97 1.745087 CCATTTGTCCCGGTTCAGATG 59.255 52.381 15.06 15.06 0.00 2.90
97 98 2.617788 CCATTTGTCCCGGTTCAGATGA 60.618 50.000 20.31 0.14 30.90 2.92
98 99 3.282021 CATTTGTCCCGGTTCAGATGAT 58.718 45.455 16.26 1.48 30.90 2.45
99 100 2.401583 TTGTCCCGGTTCAGATGATG 57.598 50.000 0.00 0.00 0.00 3.07
100 101 1.567357 TGTCCCGGTTCAGATGATGA 58.433 50.000 0.00 0.00 35.62 2.92
101 102 2.118679 TGTCCCGGTTCAGATGATGAT 58.881 47.619 0.00 0.00 37.89 2.45
102 103 2.158914 TGTCCCGGTTCAGATGATGATG 60.159 50.000 0.00 0.00 37.89 3.07
103 104 1.202687 TCCCGGTTCAGATGATGATGC 60.203 52.381 0.00 0.00 37.89 3.91
104 105 0.863799 CCGGTTCAGATGATGATGCG 59.136 55.000 0.00 0.00 37.89 4.73
105 106 0.863799 CGGTTCAGATGATGATGCGG 59.136 55.000 0.00 0.00 37.89 5.69
106 107 1.807755 CGGTTCAGATGATGATGCGGT 60.808 52.381 0.00 0.00 37.89 5.68
107 108 2.545742 CGGTTCAGATGATGATGCGGTA 60.546 50.000 0.00 0.00 37.89 4.02
108 109 2.802816 GGTTCAGATGATGATGCGGTAC 59.197 50.000 0.00 0.00 37.89 3.34
109 110 3.457234 GTTCAGATGATGATGCGGTACA 58.543 45.455 0.00 0.00 37.89 2.90
110 111 3.097877 TCAGATGATGATGCGGTACAC 57.902 47.619 0.00 0.00 31.12 2.90
111 112 2.543653 TCAGATGATGATGCGGTACACG 60.544 50.000 0.00 0.00 38.26 4.49
112 113 4.796882 TCAGATGATGATGCGGTACACGA 61.797 47.826 7.77 0.00 37.70 4.35
113 114 6.228117 TCAGATGATGATGCGGTACACGAA 62.228 45.833 7.77 0.00 37.70 3.85
114 115 2.595124 TGATGATGCGGTACACGAAT 57.405 45.000 7.77 2.82 45.72 3.34
115 116 2.899976 TGATGATGCGGTACACGAATT 58.100 42.857 7.77 0.00 42.18 2.17
116 117 3.266636 TGATGATGCGGTACACGAATTT 58.733 40.909 7.77 0.00 42.18 1.82
117 118 3.687212 TGATGATGCGGTACACGAATTTT 59.313 39.130 7.77 0.00 42.18 1.82
118 119 4.155099 TGATGATGCGGTACACGAATTTTT 59.845 37.500 7.77 0.00 42.18 1.94
119 120 3.816091 TGATGCGGTACACGAATTTTTG 58.184 40.909 7.77 0.00 42.18 2.44
120 121 3.251245 TGATGCGGTACACGAATTTTTGT 59.749 39.130 7.77 0.00 42.18 2.83
121 122 3.844099 GATGCGGTACACGAATTTTTGTC 59.156 43.478 7.77 0.00 42.18 3.18
122 123 4.378046 GATGCGGTACACGAATTTTTGTCT 60.378 41.667 7.77 0.00 42.18 3.41
123 124 5.841774 GATGCGGTACACGAATTTTTGTCTT 60.842 40.000 7.77 0.00 42.18 3.01
124 125 7.270907 GATGCGGTACACGAATTTTTGTCTTT 61.271 38.462 7.77 0.00 42.18 2.52
125 126 8.669177 GATGCGGTACACGAATTTTTGTCTTTT 61.669 37.037 7.77 0.00 42.18 2.27
148 149 3.420300 TTTTGCGGGGTTATCTACACA 57.580 42.857 0.00 0.00 0.00 3.72
179 180 5.045213 TCACAGGGCATATCTGAAAAAGGTA 60.045 40.000 0.00 0.00 36.22 3.08
188 189 9.726438 GCATATCTGAAAAAGGTATACTATGGT 57.274 33.333 2.25 0.00 29.83 3.55
589 590 9.188588 CAGTGTCGTAGTTTTGAACTAATTCTA 57.811 33.333 2.37 0.00 44.95 2.10
616 621 5.174579 AGTTAGTTCAAAACTACGACGCTTC 59.825 40.000 0.00 0.00 43.30 3.86
665 670 7.388500 ACTTTCCATTATTACCGACGAAAAAGA 59.612 33.333 0.00 0.00 0.00 2.52
666 671 7.670009 TTCCATTATTACCGACGAAAAAGAA 57.330 32.000 0.00 0.00 0.00 2.52
667 672 7.670009 TCCATTATTACCGACGAAAAAGAAA 57.330 32.000 0.00 0.00 0.00 2.52
668 673 8.097078 TCCATTATTACCGACGAAAAAGAAAA 57.903 30.769 0.00 0.00 0.00 2.29
669 674 8.231837 TCCATTATTACCGACGAAAAAGAAAAG 58.768 33.333 0.00 0.00 0.00 2.27
670 675 8.231837 CCATTATTACCGACGAAAAAGAAAAGA 58.768 33.333 0.00 0.00 0.00 2.52
671 676 9.601971 CATTATTACCGACGAAAAAGAAAAGAA 57.398 29.630 0.00 0.00 0.00 2.52
675 680 6.621737 ACCGACGAAAAAGAAAAGAAAAAC 57.378 33.333 0.00 0.00 0.00 2.43
689 694 3.365472 AGAAAAACTTCACTGGGCTTGT 58.635 40.909 0.00 0.00 0.00 3.16
690 695 3.131046 AGAAAAACTTCACTGGGCTTGTG 59.869 43.478 4.51 4.51 36.82 3.33
709 714 1.142870 TGCCCTTGGTGTATCATAGCC 59.857 52.381 0.00 0.00 0.00 3.93
710 715 1.545651 GCCCTTGGTGTATCATAGCCC 60.546 57.143 0.00 0.00 0.00 5.19
711 716 1.774254 CCCTTGGTGTATCATAGCCCA 59.226 52.381 0.00 0.00 0.00 5.36
712 717 2.224621 CCCTTGGTGTATCATAGCCCAG 60.225 54.545 0.00 0.00 0.00 4.45
713 718 2.498167 CTTGGTGTATCATAGCCCAGC 58.502 52.381 0.00 0.00 0.00 4.85
714 719 1.806496 TGGTGTATCATAGCCCAGCT 58.194 50.000 0.00 0.00 43.41 4.24
715 720 1.417517 TGGTGTATCATAGCCCAGCTG 59.582 52.381 6.78 6.78 40.10 4.24
716 721 1.517242 GTGTATCATAGCCCAGCTGC 58.483 55.000 8.66 0.00 40.10 5.25
731 736 2.045524 AGCTGCTACTGTGAGCCATAT 58.954 47.619 0.00 0.00 42.11 1.78
781 786 1.867233 TGACTCTTCAAAGCAGCGTTC 59.133 47.619 0.00 0.00 0.00 3.95
793 798 5.391312 AAGCAGCGTTCTATTTTGGAAAT 57.609 34.783 0.00 0.00 0.00 2.17
795 800 6.509418 AGCAGCGTTCTATTTTGGAAATTA 57.491 33.333 0.00 0.00 0.00 1.40
943 963 3.135530 GCTCTCTCTCTCTCTCTCTCCTT 59.864 52.174 0.00 0.00 0.00 3.36
1146 1170 2.284995 GAGCACCACCTCCCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
1321 1777 5.395324 CCGATCCAGGTCTTTACTAACATGT 60.395 44.000 0.00 0.00 0.00 3.21
1327 1783 6.370718 CCAGGTCTTTACTAACATGTTGTACC 59.629 42.308 21.42 17.70 0.00 3.34
1782 2253 4.057063 ACACATGTACCAGTACCTACCT 57.943 45.455 0.00 0.00 35.26 3.08
1788 2259 6.069440 ACATGTACCAGTACCTACCTACTGTA 60.069 42.308 0.00 0.00 41.45 2.74
1789 2260 5.994250 TGTACCAGTACCTACCTACTGTAG 58.006 45.833 7.87 7.87 45.55 2.74
1790 2261 5.488919 TGTACCAGTACCTACCTACTGTAGT 59.511 44.000 13.42 4.95 44.66 2.73
1791 2262 6.672218 TGTACCAGTACCTACCTACTGTAGTA 59.328 42.308 13.42 5.75 44.66 1.82
2092 2584 1.755783 CTGCCCTGCCTTTCCATCC 60.756 63.158 0.00 0.00 0.00 3.51
2149 2641 3.552890 GCACAGTAGCTTTTTGGAAAGGG 60.553 47.826 0.00 0.00 42.04 3.95
2150 2642 3.005791 CACAGTAGCTTTTTGGAAAGGGG 59.994 47.826 0.00 0.00 42.04 4.79
2201 2693 1.820906 CTCGTGGTCATGGCCATGG 60.821 63.158 38.81 25.16 43.78 3.66
2232 2724 0.703466 CGAGTCGCTGTTCGTTTCTC 59.297 55.000 0.00 0.00 39.67 2.87
2238 2730 0.436531 GCTGTTCGTTTCTCTGAGCG 59.563 55.000 0.00 0.00 0.00 5.03
2241 2733 0.711118 GTTCGTTTCTCTGAGCGAGC 59.289 55.000 0.00 2.29 39.70 5.03
2257 2757 1.946745 GAGCCTTTTGAGGAGGATCG 58.053 55.000 0.00 0.00 39.61 3.69
2311 2811 2.383245 ATCACCATCATCCCGGTCGC 62.383 60.000 0.00 0.00 31.41 5.19
2324 2824 2.125912 GTCGCGGCATCTCTGTGT 60.126 61.111 5.47 0.00 33.36 3.72
2325 2825 2.125952 TCGCGGCATCTCTGTGTG 60.126 61.111 6.13 0.00 33.36 3.82
2326 2826 3.857854 CGCGGCATCTCTGTGTGC 61.858 66.667 0.00 0.00 40.55 4.57
2328 2828 2.125952 CGGCATCTCTGTGTGCGA 60.126 61.111 0.00 0.00 42.15 5.10
2399 2928 0.322906 TGCAATTATGTGTGGGCCGA 60.323 50.000 0.00 0.00 0.00 5.54
2444 2973 0.392863 TGATTAGGTGCGCATGTGCT 60.393 50.000 29.79 14.16 39.32 4.40
2486 3020 4.202315 TGCTTTCTCCTTGTTGCTAGTACA 60.202 41.667 0.00 0.00 0.00 2.90
2487 3021 4.152580 GCTTTCTCCTTGTTGCTAGTACAC 59.847 45.833 0.00 0.00 0.00 2.90
2488 3022 3.955650 TCTCCTTGTTGCTAGTACACC 57.044 47.619 0.00 0.00 0.00 4.16
2489 3023 3.236047 TCTCCTTGTTGCTAGTACACCA 58.764 45.455 0.00 0.00 0.00 4.17
2522 3056 5.645067 CAGACTTCATAACATTCAGGCAGAA 59.355 40.000 0.00 0.00 41.28 3.02
2546 3086 3.002759 CAGATGCATGATTCACTGCTGAG 59.997 47.826 2.46 0.00 39.16 3.35
2568 3108 3.441572 GCTTCTGCATGAACTACCAATGT 59.558 43.478 0.00 0.00 39.41 2.71
2579 3119 8.950210 CATGAACTACCAATGTGAAATTCTAGT 58.050 33.333 0.00 0.00 0.00 2.57
2637 3189 5.277538 GCTACCAAGATGGATTCGATTGTTC 60.278 44.000 2.85 0.00 40.96 3.18
2647 3199 5.821995 TGGATTCGATTGTTCAATGCTGATA 59.178 36.000 2.63 0.00 0.00 2.15
2655 3207 7.901889 CGATTGTTCAATGCTGATATATACTGC 59.098 37.037 2.63 0.00 0.00 4.40
2662 3218 7.493645 TCAATGCTGATATATACTGCTGTATGC 59.506 37.037 22.42 16.74 39.49 3.14
2667 3223 7.381948 GCTGATATATACTGCTGTATGCTGATC 59.618 40.741 22.42 17.88 42.27 2.92
2668 3224 7.420800 TGATATATACTGCTGTATGCTGATCG 58.579 38.462 22.42 0.00 42.27 3.69
2692 3248 2.752030 CAGATACTGGGACTGAAGGGA 58.248 52.381 0.00 0.00 34.07 4.20
2890 3449 3.122250 CTTCTACCCCTCCGTCGCG 62.122 68.421 0.00 0.00 0.00 5.87
3056 3618 0.445436 CCAGCAGTTCAACTGATCGC 59.555 55.000 22.30 5.55 41.62 4.58
3063 3625 2.829043 TTCAACTGATCGCCCGGTCG 62.829 60.000 0.00 0.00 0.00 4.79
3309 3886 3.817647 GAGTTGATGATGAATAGTGGGGC 59.182 47.826 0.00 0.00 0.00 5.80
3501 4088 6.691754 TGTTGTATAGGTTAATGGTGCATG 57.308 37.500 0.00 0.00 0.00 4.06
3561 4150 6.363626 GTGAAGACTGTGACATACTTAGTGTG 59.636 42.308 7.56 7.56 0.00 3.82
3562 4151 6.040504 TGAAGACTGTGACATACTTAGTGTGT 59.959 38.462 14.38 14.38 40.38 3.72
3598 4187 1.841450 CGAGAGGCCGAGATTAACAC 58.159 55.000 0.00 0.00 0.00 3.32
3601 4190 3.126831 GAGAGGCCGAGATTAACACATG 58.873 50.000 0.00 0.00 0.00 3.21
3627 4216 7.537649 GCCTTGTGTAAAAGTTGCTTACTATTC 59.462 37.037 0.49 0.00 35.54 1.75
3633 4222 9.515226 TGTAAAAGTTGCTTACTATTCTCCATT 57.485 29.630 0.49 0.00 35.54 3.16
3638 4227 6.313905 AGTTGCTTACTATTCTCCATTGTTCG 59.686 38.462 0.00 0.00 34.56 3.95
3649 4238 7.680442 TTCTCCATTGTTCGACATTTTATCA 57.320 32.000 0.00 0.00 0.00 2.15
3652 4241 8.826710 TCTCCATTGTTCGACATTTTATCATAC 58.173 33.333 0.00 0.00 0.00 2.39
3653 4242 8.499403 TCCATTGTTCGACATTTTATCATACA 57.501 30.769 0.00 0.00 0.00 2.29
3657 4246 8.648422 TTGTTCGACATTTTATCATACAAACG 57.352 30.769 0.00 0.00 0.00 3.60
3692 4282 8.682710 GCAATACATTTTCCAAAGGACTACATA 58.317 33.333 0.00 0.00 0.00 2.29
3732 4322 2.992124 TATTAGCTACTTTGCGCCCA 57.008 45.000 4.18 0.00 38.13 5.36
3733 4323 1.379527 ATTAGCTACTTTGCGCCCAC 58.620 50.000 4.18 0.00 38.13 4.61
3735 4325 1.832719 TAGCTACTTTGCGCCCACCA 61.833 55.000 4.18 0.00 38.13 4.17
3736 4326 2.046285 GCTACTTTGCGCCCACCAT 61.046 57.895 4.18 0.00 0.00 3.55
3738 4328 1.745232 CTACTTTGCGCCCACCATTA 58.255 50.000 4.18 0.00 0.00 1.90
3739 4329 2.088423 CTACTTTGCGCCCACCATTAA 58.912 47.619 4.18 0.00 0.00 1.40
3741 4331 1.272212 ACTTTGCGCCCACCATTAAAG 59.728 47.619 4.18 8.02 0.00 1.85
3742 4332 1.272212 CTTTGCGCCCACCATTAAAGT 59.728 47.619 4.18 0.00 0.00 2.66
3759 4349 9.469807 CCATTAAAGTACATTTGCACAAGTTTA 57.530 29.630 0.00 0.00 32.01 2.01
3765 4355 7.370383 AGTACATTTGCACAAGTTTATTGGAG 58.630 34.615 0.00 0.00 0.00 3.86
3770 4360 3.119884 TGCACAAGTTTATTGGAGATGCG 60.120 43.478 0.00 0.00 33.26 4.73
3777 4367 7.542130 ACAAGTTTATTGGAGATGCGAAATTTC 59.458 33.333 8.20 8.20 0.00 2.17
3778 4368 7.156876 AGTTTATTGGAGATGCGAAATTTCA 57.843 32.000 17.99 0.43 0.00 2.69
3779 4369 7.601856 AGTTTATTGGAGATGCGAAATTTCAA 58.398 30.769 17.99 6.05 0.00 2.69
3782 4372 6.710692 ATTGGAGATGCGAAATTTCAAAAC 57.289 33.333 17.99 6.65 0.00 2.43
3783 4373 5.193663 TGGAGATGCGAAATTTCAAAACA 57.806 34.783 17.99 10.14 0.00 2.83
3787 4380 7.226325 TGGAGATGCGAAATTTCAAAACAATTT 59.774 29.630 17.99 0.00 36.69 1.82
3840 4437 7.571089 AAAAACGTTTGTAGAACTCCAAAAC 57.429 32.000 15.46 0.00 32.77 2.43
3845 4442 6.094325 ACGTTTGTAGAACTCCAAAACAATGA 59.906 34.615 0.00 0.00 32.77 2.57
3851 4448 9.126151 TGTAGAACTCCAAAACAATGAATGTAA 57.874 29.630 0.00 0.00 42.99 2.41
3852 4449 9.394477 GTAGAACTCCAAAACAATGAATGTAAC 57.606 33.333 0.00 0.00 42.99 2.50
3858 4455 8.586570 TCCAAAACAATGAATGTAACACAATC 57.413 30.769 0.00 0.00 42.99 2.67
3860 4457 7.359097 CCAAAACAATGAATGTAACACAATCGG 60.359 37.037 0.00 0.00 42.99 4.18
3861 4458 5.309323 ACAATGAATGTAACACAATCGGG 57.691 39.130 0.00 0.00 41.63 5.14
3863 4460 2.784347 TGAATGTAACACAATCGGGCA 58.216 42.857 0.00 0.00 30.82 5.36
3864 4461 2.746904 TGAATGTAACACAATCGGGCAG 59.253 45.455 0.00 0.00 30.82 4.85
3865 4462 2.489938 ATGTAACACAATCGGGCAGT 57.510 45.000 0.00 0.00 0.00 4.40
3866 4463 1.518325 TGTAACACAATCGGGCAGTG 58.482 50.000 0.00 0.00 39.12 3.66
3872 4469 0.685097 ACAATCGGGCAGTGTAGTGT 59.315 50.000 0.00 0.00 0.00 3.55
3883 4480 5.106673 GGGCAGTGTAGTGTATGAAACTTTC 60.107 44.000 0.00 0.00 0.00 2.62
3885 4482 6.347725 GGCAGTGTAGTGTATGAAACTTTCAG 60.348 42.308 9.97 0.00 43.98 3.02
3887 4484 7.042051 GCAGTGTAGTGTATGAAACTTTCAGAA 60.042 37.037 9.97 0.00 43.98 3.02
3895 4492 9.387123 GTGTATGAAACTTTCAGAAAATCAGAC 57.613 33.333 16.50 16.50 43.98 3.51
3897 4494 9.950680 GTATGAAACTTTCAGAAAATCAGACAA 57.049 29.630 17.54 3.24 43.98 3.18
3908 4505 5.359860 AGAAAATCAGACAAGTTCGGGTTTT 59.640 36.000 0.00 0.00 43.10 2.43
3909 4506 4.568152 AATCAGACAAGTTCGGGTTTTG 57.432 40.909 0.00 0.00 0.00 2.44
3910 4507 3.269538 TCAGACAAGTTCGGGTTTTGA 57.730 42.857 0.00 0.00 0.00 2.69
3911 4508 2.940410 TCAGACAAGTTCGGGTTTTGAC 59.060 45.455 0.00 0.00 0.00 3.18
3912 4509 2.680841 CAGACAAGTTCGGGTTTTGACA 59.319 45.455 0.00 0.00 0.00 3.58
3913 4510 3.127895 CAGACAAGTTCGGGTTTTGACAA 59.872 43.478 0.00 0.00 0.00 3.18
3914 4511 3.128068 AGACAAGTTCGGGTTTTGACAAC 59.872 43.478 0.00 0.00 0.00 3.32
3915 4512 3.086282 ACAAGTTCGGGTTTTGACAACT 58.914 40.909 0.00 0.00 0.00 3.16
3916 4513 3.128068 ACAAGTTCGGGTTTTGACAACTC 59.872 43.478 0.00 0.00 0.00 3.01
3917 4514 2.993937 AGTTCGGGTTTTGACAACTCA 58.006 42.857 0.00 0.00 0.00 3.41
3918 4515 2.943033 AGTTCGGGTTTTGACAACTCAG 59.057 45.455 0.00 0.00 0.00 3.35
3919 4516 2.681344 GTTCGGGTTTTGACAACTCAGT 59.319 45.455 0.00 0.00 0.00 3.41
3920 4517 2.993937 TCGGGTTTTGACAACTCAGTT 58.006 42.857 0.00 0.00 0.00 3.16
3921 4518 3.349022 TCGGGTTTTGACAACTCAGTTT 58.651 40.909 0.00 0.00 0.00 2.66
3922 4519 3.375922 TCGGGTTTTGACAACTCAGTTTC 59.624 43.478 0.00 0.00 0.00 2.78
3923 4520 3.127895 CGGGTTTTGACAACTCAGTTTCA 59.872 43.478 0.00 0.00 0.00 2.69
3924 4521 4.421058 GGGTTTTGACAACTCAGTTTCAC 58.579 43.478 0.00 0.00 0.00 3.18
3925 4522 4.095610 GGTTTTGACAACTCAGTTTCACG 58.904 43.478 0.00 0.00 0.00 4.35
3926 4523 4.095610 GTTTTGACAACTCAGTTTCACGG 58.904 43.478 0.00 0.00 0.00 4.94
3927 4524 1.948104 TGACAACTCAGTTTCACGGG 58.052 50.000 0.00 0.00 0.00 5.28
3928 4525 1.483004 TGACAACTCAGTTTCACGGGA 59.517 47.619 0.00 0.00 0.00 5.14
3929 4526 2.135933 GACAACTCAGTTTCACGGGAG 58.864 52.381 0.00 0.00 32.94 4.30
3930 4527 1.202651 ACAACTCAGTTTCACGGGAGG 60.203 52.381 0.00 0.00 31.62 4.30
3931 4528 1.129058 AACTCAGTTTCACGGGAGGT 58.871 50.000 0.00 0.00 31.62 3.85
3932 4529 2.005370 ACTCAGTTTCACGGGAGGTA 57.995 50.000 0.00 0.00 31.62 3.08
3933 4530 1.617357 ACTCAGTTTCACGGGAGGTAC 59.383 52.381 0.00 0.00 31.62 3.34
3935 4532 2.299297 CTCAGTTTCACGGGAGGTACTT 59.701 50.000 0.00 0.00 41.55 2.24
3936 4533 2.701951 TCAGTTTCACGGGAGGTACTTT 59.298 45.455 0.00 0.00 41.55 2.66
3937 4534 3.135167 TCAGTTTCACGGGAGGTACTTTT 59.865 43.478 0.00 0.00 41.55 2.27
3938 4535 3.881089 CAGTTTCACGGGAGGTACTTTTT 59.119 43.478 0.00 0.00 41.55 1.94
3955 4552 2.128729 TTTTTGCGGGGGTTCTTGG 58.871 52.632 0.00 0.00 0.00 3.61
3956 4553 0.397254 TTTTTGCGGGGGTTCTTGGA 60.397 50.000 0.00 0.00 0.00 3.53
3957 4554 0.397254 TTTTGCGGGGGTTCTTGGAA 60.397 50.000 0.00 0.00 0.00 3.53
3958 4555 0.825840 TTTGCGGGGGTTCTTGGAAG 60.826 55.000 0.00 0.00 0.00 3.46
3959 4556 2.361230 GCGGGGGTTCTTGGAAGG 60.361 66.667 0.00 0.00 0.00 3.46
3960 4557 3.167414 CGGGGGTTCTTGGAAGGT 58.833 61.111 0.00 0.00 0.00 3.50
3961 4558 1.844544 GCGGGGGTTCTTGGAAGGTA 61.845 60.000 0.00 0.00 0.00 3.08
3962 4559 0.916809 CGGGGGTTCTTGGAAGGTAT 59.083 55.000 0.00 0.00 0.00 2.73
3963 4560 1.134189 CGGGGGTTCTTGGAAGGTATC 60.134 57.143 0.00 0.00 0.00 2.24
3964 4561 1.920351 GGGGGTTCTTGGAAGGTATCA 59.080 52.381 0.00 0.00 0.00 2.15
3965 4562 2.514160 GGGGGTTCTTGGAAGGTATCAT 59.486 50.000 0.00 0.00 0.00 2.45
3966 4563 3.435169 GGGGGTTCTTGGAAGGTATCATC 60.435 52.174 0.00 0.00 0.00 2.92
3967 4564 3.459969 GGGGTTCTTGGAAGGTATCATCT 59.540 47.826 0.00 0.00 0.00 2.90
3968 4565 4.445019 GGGGTTCTTGGAAGGTATCATCTC 60.445 50.000 0.00 0.00 0.00 2.75
3969 4566 4.410555 GGGTTCTTGGAAGGTATCATCTCT 59.589 45.833 0.00 0.00 0.00 3.10
3970 4567 5.363939 GGTTCTTGGAAGGTATCATCTCTG 58.636 45.833 0.00 0.00 0.00 3.35
3971 4568 5.104735 GGTTCTTGGAAGGTATCATCTCTGT 60.105 44.000 0.00 0.00 0.00 3.41
3972 4569 5.860941 TCTTGGAAGGTATCATCTCTGTC 57.139 43.478 0.00 0.00 0.00 3.51
3973 4570 5.523588 TCTTGGAAGGTATCATCTCTGTCT 58.476 41.667 0.00 0.00 0.00 3.41
3974 4571 5.596361 TCTTGGAAGGTATCATCTCTGTCTC 59.404 44.000 0.00 0.00 0.00 3.36
3975 4572 4.871822 TGGAAGGTATCATCTCTGTCTCA 58.128 43.478 0.00 0.00 0.00 3.27
3976 4573 5.272402 TGGAAGGTATCATCTCTGTCTCAA 58.728 41.667 0.00 0.00 0.00 3.02
3977 4574 5.362143 TGGAAGGTATCATCTCTGTCTCAAG 59.638 44.000 0.00 0.00 0.00 3.02
3978 4575 5.596361 GGAAGGTATCATCTCTGTCTCAAGA 59.404 44.000 0.00 0.00 0.00 3.02
3979 4576 6.097554 GGAAGGTATCATCTCTGTCTCAAGAA 59.902 42.308 0.00 0.00 0.00 2.52
3980 4577 6.713762 AGGTATCATCTCTGTCTCAAGAAG 57.286 41.667 0.00 0.00 0.00 2.85
3981 4578 6.194235 AGGTATCATCTCTGTCTCAAGAAGT 58.806 40.000 0.00 0.00 0.00 3.01
3982 4579 7.350382 AGGTATCATCTCTGTCTCAAGAAGTA 58.650 38.462 0.00 0.00 0.00 2.24
3983 4580 7.836685 AGGTATCATCTCTGTCTCAAGAAGTAA 59.163 37.037 0.00 0.00 0.00 2.24
3984 4581 8.134895 GGTATCATCTCTGTCTCAAGAAGTAAG 58.865 40.741 0.00 0.00 0.00 2.34
3985 4582 7.953005 ATCATCTCTGTCTCAAGAAGTAAGA 57.047 36.000 0.00 0.00 0.00 2.10
3986 4583 7.151999 TCATCTCTGTCTCAAGAAGTAAGAC 57.848 40.000 0.00 0.00 39.87 3.01
3987 4584 5.614923 TCTCTGTCTCAAGAAGTAAGACG 57.385 43.478 0.00 0.00 41.84 4.18
3988 4585 5.064558 TCTCTGTCTCAAGAAGTAAGACGT 58.935 41.667 0.00 0.00 41.84 4.34
3989 4586 5.531659 TCTCTGTCTCAAGAAGTAAGACGTT 59.468 40.000 0.00 0.00 41.84 3.99
3990 4587 6.039493 TCTCTGTCTCAAGAAGTAAGACGTTT 59.961 38.462 0.00 0.00 41.84 3.60
3991 4588 6.570692 TCTGTCTCAAGAAGTAAGACGTTTT 58.429 36.000 0.00 0.00 41.84 2.43
3992 4589 6.696148 TCTGTCTCAAGAAGTAAGACGTTTTC 59.304 38.462 0.00 0.00 41.84 2.29
3993 4590 6.570692 TGTCTCAAGAAGTAAGACGTTTTCT 58.429 36.000 0.00 0.00 41.84 2.52
3994 4591 6.475727 TGTCTCAAGAAGTAAGACGTTTTCTG 59.524 38.462 0.00 0.00 41.84 3.02
3995 4592 6.696148 GTCTCAAGAAGTAAGACGTTTTCTGA 59.304 38.462 0.00 0.00 33.46 3.27
3996 4593 6.696148 TCTCAAGAAGTAAGACGTTTTCTGAC 59.304 38.462 0.00 0.00 36.00 3.51
3997 4594 6.334989 TCAAGAAGTAAGACGTTTTCTGACA 58.665 36.000 0.00 0.00 38.14 3.58
3998 4595 6.984474 TCAAGAAGTAAGACGTTTTCTGACAT 59.016 34.615 0.00 0.00 38.14 3.06
3999 4596 7.494625 TCAAGAAGTAAGACGTTTTCTGACATT 59.505 33.333 0.00 0.00 38.14 2.71
4000 4597 8.761497 CAAGAAGTAAGACGTTTTCTGACATTA 58.239 33.333 0.00 0.00 38.14 1.90
4001 4598 9.490379 AAGAAGTAAGACGTTTTCTGACATTAT 57.510 29.630 0.00 0.00 38.14 1.28
4002 4599 8.926710 AGAAGTAAGACGTTTTCTGACATTATG 58.073 33.333 0.00 0.00 38.14 1.90
4003 4600 8.827177 AAGTAAGACGTTTTCTGACATTATGA 57.173 30.769 0.00 0.00 38.14 2.15
4004 4601 9.436957 AAGTAAGACGTTTTCTGACATTATGAT 57.563 29.630 0.00 0.00 38.14 2.45
4007 4604 7.470289 AGACGTTTTCTGACATTATGATAGC 57.530 36.000 0.00 0.00 31.12 2.97
4008 4605 6.199154 AGACGTTTTCTGACATTATGATAGCG 59.801 38.462 0.00 0.00 31.12 4.26
4009 4606 5.810587 ACGTTTTCTGACATTATGATAGCGT 59.189 36.000 0.00 0.00 0.00 5.07
4010 4607 6.312918 ACGTTTTCTGACATTATGATAGCGTT 59.687 34.615 0.00 0.00 28.81 4.84
4011 4608 7.490079 ACGTTTTCTGACATTATGATAGCGTTA 59.510 33.333 0.00 0.00 28.81 3.18
4012 4609 8.325282 CGTTTTCTGACATTATGATAGCGTTAA 58.675 33.333 0.00 0.00 0.00 2.01
4013 4610 9.982291 GTTTTCTGACATTATGATAGCGTTAAA 57.018 29.630 0.00 0.00 0.00 1.52
4043 4640 7.554959 TCTTACATTTTAAGACAGAGGGAGT 57.445 36.000 0.00 0.00 0.00 3.85
4044 4641 8.660295 TCTTACATTTTAAGACAGAGGGAGTA 57.340 34.615 0.00 0.00 0.00 2.59
4045 4642 9.268282 TCTTACATTTTAAGACAGAGGGAGTAT 57.732 33.333 0.00 0.00 0.00 2.12
4046 4643 9.892130 CTTACATTTTAAGACAGAGGGAGTATT 57.108 33.333 0.00 0.00 0.00 1.89
4049 4646 9.892130 ACATTTTAAGACAGAGGGAGTATTTAG 57.108 33.333 0.00 0.00 0.00 1.85
4050 4647 9.892130 CATTTTAAGACAGAGGGAGTATTTAGT 57.108 33.333 0.00 0.00 0.00 2.24
4052 4649 9.720769 TTTTAAGACAGAGGGAGTATTTAGTTG 57.279 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.297620 CAAGTGGGCCCTGTGCAC 61.298 66.667 25.70 12.75 46.61 4.57
3 4 3.567579 TAGCAAGTGGGCCCTGTGC 62.568 63.158 27.71 27.71 40.16 4.57
4 5 1.074775 TTAGCAAGTGGGCCCTGTG 59.925 57.895 25.70 18.67 0.00 3.66
5 6 1.074951 GTTAGCAAGTGGGCCCTGT 59.925 57.895 25.70 7.05 0.00 4.00
6 7 1.678970 GGTTAGCAAGTGGGCCCTG 60.679 63.158 25.70 14.83 0.00 4.45
7 8 2.763902 GGTTAGCAAGTGGGCCCT 59.236 61.111 25.70 3.19 0.00 5.19
8 9 2.362503 GGGTTAGCAAGTGGGCCC 60.363 66.667 17.59 17.59 0.00 5.80
9 10 2.362503 GGGGTTAGCAAGTGGGCC 60.363 66.667 0.00 0.00 0.00 5.80
10 11 2.362503 GGGGGTTAGCAAGTGGGC 60.363 66.667 0.00 0.00 0.00 5.36
11 12 1.000896 CTGGGGGTTAGCAAGTGGG 60.001 63.158 0.00 0.00 0.00 4.61
12 13 1.678970 GCTGGGGGTTAGCAAGTGG 60.679 63.158 0.00 0.00 40.81 4.00
13 14 2.040544 CGCTGGGGGTTAGCAAGTG 61.041 63.158 0.00 0.00 41.18 3.16
14 15 2.351276 CGCTGGGGGTTAGCAAGT 59.649 61.111 0.00 0.00 41.18 3.16
15 16 2.040544 CACGCTGGGGGTTAGCAAG 61.041 63.158 0.00 0.00 41.18 4.01
16 17 1.847798 ATCACGCTGGGGGTTAGCAA 61.848 55.000 0.00 0.00 41.18 3.91
17 18 2.297895 ATCACGCTGGGGGTTAGCA 61.298 57.895 0.00 0.00 41.18 3.49
18 19 1.819632 CATCACGCTGGGGGTTAGC 60.820 63.158 0.00 0.00 37.80 3.09
19 20 1.153168 CCATCACGCTGGGGGTTAG 60.153 63.158 0.00 0.00 32.28 2.34
20 21 0.618107 TACCATCACGCTGGGGGTTA 60.618 55.000 4.51 0.00 40.85 2.85
21 22 1.493854 TTACCATCACGCTGGGGGTT 61.494 55.000 4.51 0.00 40.85 4.11
22 23 1.279025 ATTACCATCACGCTGGGGGT 61.279 55.000 4.51 0.00 40.85 4.95
23 24 0.106719 AATTACCATCACGCTGGGGG 60.107 55.000 4.51 0.00 40.85 5.40
24 25 1.676006 GAAATTACCATCACGCTGGGG 59.324 52.381 4.51 0.00 40.85 4.96
25 26 1.676006 GGAAATTACCATCACGCTGGG 59.324 52.381 4.51 0.00 40.85 4.45
26 27 2.364632 TGGAAATTACCATCACGCTGG 58.635 47.619 0.00 0.00 42.35 4.85
27 28 4.336433 AGATTGGAAATTACCATCACGCTG 59.664 41.667 0.00 0.00 39.82 5.18
28 29 4.526970 AGATTGGAAATTACCATCACGCT 58.473 39.130 0.00 0.00 39.82 5.07
29 30 4.900635 AGATTGGAAATTACCATCACGC 57.099 40.909 0.00 0.00 39.82 5.34
30 31 6.315144 TGTGTAGATTGGAAATTACCATCACG 59.685 38.462 0.00 0.00 39.82 4.35
31 32 7.624360 TGTGTAGATTGGAAATTACCATCAC 57.376 36.000 0.00 0.00 39.82 3.06
43 44 9.325248 TGAATCTGGATATATGTGTAGATTGGA 57.675 33.333 10.58 0.00 35.64 3.53
50 51 8.486210 GCCCTTATGAATCTGGATATATGTGTA 58.514 37.037 0.00 0.00 0.00 2.90
51 52 7.341805 GCCCTTATGAATCTGGATATATGTGT 58.658 38.462 0.00 0.00 0.00 3.72
52 53 6.769822 GGCCCTTATGAATCTGGATATATGTG 59.230 42.308 0.00 0.00 0.00 3.21
53 54 6.448061 TGGCCCTTATGAATCTGGATATATGT 59.552 38.462 0.00 0.00 0.00 2.29
54 55 6.903516 TGGCCCTTATGAATCTGGATATATG 58.096 40.000 0.00 0.00 0.00 1.78
55 56 7.718399 ATGGCCCTTATGAATCTGGATATAT 57.282 36.000 0.00 0.00 0.00 0.86
56 57 7.529534 AATGGCCCTTATGAATCTGGATATA 57.470 36.000 0.00 0.00 0.00 0.86
57 58 6.413129 AATGGCCCTTATGAATCTGGATAT 57.587 37.500 0.00 0.00 0.00 1.63
58 59 5.865977 AATGGCCCTTATGAATCTGGATA 57.134 39.130 0.00 0.00 0.00 2.59
59 60 4.754411 AATGGCCCTTATGAATCTGGAT 57.246 40.909 0.00 0.00 0.00 3.41
60 61 4.217510 CAAATGGCCCTTATGAATCTGGA 58.782 43.478 0.00 0.00 0.00 3.86
61 62 3.962718 ACAAATGGCCCTTATGAATCTGG 59.037 43.478 0.00 0.00 0.00 3.86
62 63 4.038402 GGACAAATGGCCCTTATGAATCTG 59.962 45.833 0.00 0.00 37.19 2.90
63 64 4.218312 GGACAAATGGCCCTTATGAATCT 58.782 43.478 0.00 0.00 37.19 2.40
64 65 4.590850 GGACAAATGGCCCTTATGAATC 57.409 45.455 0.00 0.00 37.19 2.52
74 75 1.595093 CTGAACCGGGACAAATGGCC 61.595 60.000 6.32 0.00 44.61 5.36
75 76 0.608035 TCTGAACCGGGACAAATGGC 60.608 55.000 6.32 0.00 0.00 4.40
76 77 1.745087 CATCTGAACCGGGACAAATGG 59.255 52.381 6.32 0.00 0.00 3.16
77 78 2.710377 TCATCTGAACCGGGACAAATG 58.290 47.619 6.32 8.23 0.00 2.32
78 79 3.054434 TCATCATCTGAACCGGGACAAAT 60.054 43.478 6.32 0.00 0.00 2.32
79 80 2.304470 TCATCATCTGAACCGGGACAAA 59.696 45.455 6.32 0.00 0.00 2.83
80 81 1.905894 TCATCATCTGAACCGGGACAA 59.094 47.619 6.32 0.00 0.00 3.18
81 82 1.567357 TCATCATCTGAACCGGGACA 58.433 50.000 6.32 4.33 0.00 4.02
82 83 2.487934 CATCATCATCTGAACCGGGAC 58.512 52.381 6.32 0.00 37.44 4.46
83 84 1.202687 GCATCATCATCTGAACCGGGA 60.203 52.381 6.32 0.00 37.44 5.14
84 85 1.233019 GCATCATCATCTGAACCGGG 58.767 55.000 6.32 0.00 37.44 5.73
85 86 0.863799 CGCATCATCATCTGAACCGG 59.136 55.000 0.00 0.00 37.44 5.28
86 87 0.863799 CCGCATCATCATCTGAACCG 59.136 55.000 0.00 0.00 37.44 4.44
87 88 1.959042 ACCGCATCATCATCTGAACC 58.041 50.000 0.00 0.00 37.44 3.62
88 89 3.246226 GTGTACCGCATCATCATCTGAAC 59.754 47.826 0.00 0.00 37.44 3.18
89 90 3.457234 GTGTACCGCATCATCATCTGAA 58.543 45.455 0.00 0.00 37.44 3.02
90 91 2.543653 CGTGTACCGCATCATCATCTGA 60.544 50.000 0.00 0.00 38.53 3.27
91 92 1.788886 CGTGTACCGCATCATCATCTG 59.211 52.381 0.00 0.00 0.00 2.90
92 93 1.681264 TCGTGTACCGCATCATCATCT 59.319 47.619 0.00 0.00 36.19 2.90
93 94 2.134201 TCGTGTACCGCATCATCATC 57.866 50.000 0.00 0.00 36.19 2.92
94 95 2.595124 TTCGTGTACCGCATCATCAT 57.405 45.000 0.00 0.00 36.19 2.45
95 96 2.595124 ATTCGTGTACCGCATCATCA 57.405 45.000 0.00 0.00 36.19 3.07
96 97 3.944422 AAATTCGTGTACCGCATCATC 57.056 42.857 0.00 0.00 36.19 2.92
97 98 4.083003 ACAAAAATTCGTGTACCGCATCAT 60.083 37.500 0.00 0.00 36.19 2.45
98 99 3.251245 ACAAAAATTCGTGTACCGCATCA 59.749 39.130 0.00 0.00 36.19 3.07
99 100 3.817238 ACAAAAATTCGTGTACCGCATC 58.183 40.909 0.00 0.00 36.19 3.91
100 101 3.500680 AGACAAAAATTCGTGTACCGCAT 59.499 39.130 0.00 0.00 36.19 4.73
101 102 2.873472 AGACAAAAATTCGTGTACCGCA 59.127 40.909 0.00 0.00 36.19 5.69
102 103 3.531262 AGACAAAAATTCGTGTACCGC 57.469 42.857 0.00 0.00 36.19 5.68
103 104 6.799786 AAAAAGACAAAAATTCGTGTACCG 57.200 33.333 0.00 0.00 38.13 4.02
127 128 3.752665 TGTGTAGATAACCCCGCAAAAA 58.247 40.909 0.00 0.00 0.00 1.94
128 129 3.420300 TGTGTAGATAACCCCGCAAAA 57.580 42.857 0.00 0.00 0.00 2.44
129 130 3.199071 AGATGTGTAGATAACCCCGCAAA 59.801 43.478 0.00 0.00 0.00 3.68
130 131 2.769663 AGATGTGTAGATAACCCCGCAA 59.230 45.455 0.00 0.00 0.00 4.85
131 132 2.394632 AGATGTGTAGATAACCCCGCA 58.605 47.619 0.00 0.00 0.00 5.69
132 133 3.470645 AAGATGTGTAGATAACCCCGC 57.529 47.619 0.00 0.00 0.00 6.13
133 134 4.766375 ACAAAGATGTGTAGATAACCCCG 58.234 43.478 0.00 0.00 38.69 5.73
134 135 5.585047 GTGACAAAGATGTGTAGATAACCCC 59.415 44.000 0.00 0.00 40.74 4.95
135 136 6.170506 TGTGACAAAGATGTGTAGATAACCC 58.829 40.000 0.00 0.00 40.74 4.11
136 137 6.313905 CCTGTGACAAAGATGTGTAGATAACC 59.686 42.308 0.00 0.00 40.74 2.85
137 138 6.313905 CCCTGTGACAAAGATGTGTAGATAAC 59.686 42.308 0.00 0.00 40.74 1.89
138 139 6.406370 CCCTGTGACAAAGATGTGTAGATAA 58.594 40.000 0.00 0.00 40.74 1.75
139 140 5.626809 GCCCTGTGACAAAGATGTGTAGATA 60.627 44.000 0.00 0.00 40.74 1.98
142 143 2.744202 GCCCTGTGACAAAGATGTGTAG 59.256 50.000 0.00 0.00 40.74 2.74
145 146 1.608055 TGCCCTGTGACAAAGATGTG 58.392 50.000 0.00 0.00 40.74 3.21
148 149 4.164796 TCAGATATGCCCTGTGACAAAGAT 59.835 41.667 0.00 0.00 33.57 2.40
563 564 8.073355 AGAATTAGTTCAAAACTACGACACTG 57.927 34.615 0.44 0.00 43.30 3.66
589 590 6.036408 AGCGTCGTAGTTTTGAACTAACTTTT 59.964 34.615 2.37 0.00 44.95 2.27
596 601 3.450578 TGAAGCGTCGTAGTTTTGAACT 58.549 40.909 0.00 0.00 45.40 3.01
642 647 7.670009 TTCTTTTTCGTCGGTAATAATGGAA 57.330 32.000 0.00 0.00 0.00 3.53
656 661 8.699749 CAGTGAAGTTTTTCTTTTCTTTTTCGT 58.300 29.630 0.00 0.00 36.40 3.85
665 670 5.178061 CAAGCCCAGTGAAGTTTTTCTTTT 58.822 37.500 0.00 0.00 36.40 2.27
666 671 4.222810 ACAAGCCCAGTGAAGTTTTTCTTT 59.777 37.500 0.00 0.00 36.40 2.52
667 672 3.769300 ACAAGCCCAGTGAAGTTTTTCTT 59.231 39.130 0.00 0.00 39.32 2.52
668 673 3.131046 CACAAGCCCAGTGAAGTTTTTCT 59.869 43.478 0.00 0.00 39.30 2.52
669 674 3.447742 CACAAGCCCAGTGAAGTTTTTC 58.552 45.455 0.00 0.00 39.30 2.29
670 675 2.418609 GCACAAGCCCAGTGAAGTTTTT 60.419 45.455 5.11 0.00 39.30 1.94
671 676 1.136891 GCACAAGCCCAGTGAAGTTTT 59.863 47.619 5.11 0.00 39.30 2.43
689 694 1.142870 GGCTATGATACACCAAGGGCA 59.857 52.381 0.00 0.00 0.00 5.36
690 695 1.545651 GGGCTATGATACACCAAGGGC 60.546 57.143 0.00 0.00 0.00 5.19
697 702 1.071385 AGCAGCTGGGCTATGATACAC 59.929 52.381 17.12 0.00 43.70 2.90
709 714 1.449246 GGCTCACAGTAGCAGCTGG 60.449 63.158 17.12 0.00 44.64 4.85
710 715 0.107800 ATGGCTCACAGTAGCAGCTG 60.108 55.000 10.11 10.11 44.64 4.24
711 716 1.489481 TATGGCTCACAGTAGCAGCT 58.511 50.000 0.00 0.00 44.64 4.24
712 717 2.540265 ATATGGCTCACAGTAGCAGC 57.460 50.000 0.00 0.00 44.64 5.25
713 718 5.207110 AGTAATATGGCTCACAGTAGCAG 57.793 43.478 0.00 0.00 44.64 4.24
714 719 5.833667 AGTAGTAATATGGCTCACAGTAGCA 59.166 40.000 0.00 0.00 44.64 3.49
715 720 6.334102 AGTAGTAATATGGCTCACAGTAGC 57.666 41.667 0.00 0.00 41.99 3.58
716 721 8.624367 ACTAGTAGTAATATGGCTCACAGTAG 57.376 38.462 0.00 0.00 0.00 2.57
943 963 4.386986 GGGAGTATTTGAGAGAGGGAGAGA 60.387 50.000 0.00 0.00 0.00 3.10
1146 1170 2.534011 TTGTGCTGGGGATGGGGA 60.534 61.111 0.00 0.00 0.00 4.81
1312 1768 5.224888 CACACGTAGGTACAACATGTTAGT 58.775 41.667 11.53 13.72 0.00 2.24
1321 1777 0.389757 TGCAGCACACGTAGGTACAA 59.610 50.000 0.00 0.00 0.00 2.41
1327 1783 1.010935 CAGACCTGCAGCACACGTAG 61.011 60.000 8.66 0.00 0.00 3.51
1782 2253 6.434965 TGCATTGTGGTCTACTTACTACAGTA 59.565 38.462 0.00 0.00 41.17 2.74
1788 2259 7.883311 ACTAATTTGCATTGTGGTCTACTTACT 59.117 33.333 0.00 0.00 0.00 2.24
1789 2260 7.962918 CACTAATTTGCATTGTGGTCTACTTAC 59.037 37.037 0.00 0.00 0.00 2.34
1790 2261 7.663905 ACACTAATTTGCATTGTGGTCTACTTA 59.336 33.333 5.57 0.00 31.17 2.24
1791 2262 6.490040 ACACTAATTTGCATTGTGGTCTACTT 59.510 34.615 5.57 0.00 31.17 2.24
1977 2463 1.205417 CACCAACCAATCATTGAGCCC 59.795 52.381 0.00 0.00 0.00 5.19
2092 2584 1.061131 GATGACGATTTCGCAGGTGTG 59.939 52.381 0.00 0.00 44.43 3.82
2149 2641 1.658673 GCTGCCATATTCTGCTGCC 59.341 57.895 0.00 0.00 43.89 4.85
2150 2642 1.281960 CGCTGCCATATTCTGCTGC 59.718 57.895 9.26 9.26 45.49 5.25
2232 2724 0.036952 TCCTCAAAAGGCTCGCTCAG 60.037 55.000 0.00 0.00 43.02 3.35
2238 2730 1.482593 TCGATCCTCCTCAAAAGGCTC 59.517 52.381 0.00 0.00 43.02 4.70
2241 2733 2.362397 TCGATCGATCCTCCTCAAAAGG 59.638 50.000 19.51 1.29 44.89 3.11
2311 2811 2.125952 TCGCACACAGAGATGCCG 60.126 61.111 0.00 0.00 38.69 5.69
2344 2844 2.543777 AAAGGCACACATGTACGTCT 57.456 45.000 0.00 0.00 0.00 4.18
2399 2928 2.026915 GGTACTAATGGTGTTTCCGGGT 60.027 50.000 0.00 0.00 39.52 5.28
2444 2973 3.059982 AGCTACGCTTGCTGACCA 58.940 55.556 0.00 0.00 39.56 4.02
2455 2984 2.808543 ACAAGGAGAAAGCAAAGCTACG 59.191 45.455 0.00 0.00 38.25 3.51
2461 2990 4.207165 ACTAGCAACAAGGAGAAAGCAAA 58.793 39.130 0.00 0.00 0.00 3.68
2486 3020 2.598565 TGAAGTCTGAGTGCTAGTGGT 58.401 47.619 0.00 0.00 0.00 4.16
2487 3021 3.883830 ATGAAGTCTGAGTGCTAGTGG 57.116 47.619 0.00 0.00 0.00 4.00
2488 3022 5.714047 TGTTATGAAGTCTGAGTGCTAGTG 58.286 41.667 0.00 0.00 0.00 2.74
2489 3023 5.984695 TGTTATGAAGTCTGAGTGCTAGT 57.015 39.130 0.00 0.00 0.00 2.57
2522 3056 3.128764 CAGCAGTGAATCATGCATCTGTT 59.871 43.478 15.95 4.08 45.01 3.16
2546 3086 3.441572 ACATTGGTAGTTCATGCAGAAGC 59.558 43.478 0.00 0.00 36.78 3.86
2568 3108 4.336433 GCATGGCAGCTTACTAGAATTTCA 59.664 41.667 0.00 0.00 0.00 2.69
2637 3189 7.628235 GCATACAGCAGTATATATCAGCATTG 58.372 38.462 0.95 0.00 44.79 2.82
2655 3207 3.022607 TCTGCATCGATCAGCATACAG 57.977 47.619 10.49 0.61 40.42 2.74
2662 3218 2.560105 TCCCAGTATCTGCATCGATCAG 59.440 50.000 14.86 14.86 0.00 2.90
2667 3223 1.683385 TCAGTCCCAGTATCTGCATCG 59.317 52.381 0.00 0.00 0.00 3.84
2668 3224 3.494048 CCTTCAGTCCCAGTATCTGCATC 60.494 52.174 0.00 0.00 0.00 3.91
3063 3625 4.996122 AGATATATATCGTCCCGATCGACC 59.004 45.833 18.66 2.50 43.45 4.79
3073 3635 8.520835 TGACTGCAACAAAGATATATATCGTC 57.479 34.615 15.48 13.20 37.76 4.20
3086 3648 2.942376 AGACGTCATTGACTGCAACAAA 59.058 40.909 19.50 0.00 36.72 2.83
3309 3886 3.004106 CGGACTTATTCCCCTACACGTAG 59.996 52.174 0.00 0.00 42.27 3.51
3409 3986 9.513906 AACAAAAGGAAGAGGAAAAATGAAAAA 57.486 25.926 0.00 0.00 0.00 1.94
3410 3987 9.161629 GAACAAAAGGAAGAGGAAAAATGAAAA 57.838 29.630 0.00 0.00 0.00 2.29
3411 3988 7.768582 GGAACAAAAGGAAGAGGAAAAATGAAA 59.231 33.333 0.00 0.00 0.00 2.69
3412 3989 7.272244 GGAACAAAAGGAAGAGGAAAAATGAA 58.728 34.615 0.00 0.00 0.00 2.57
3413 3990 6.183360 GGGAACAAAAGGAAGAGGAAAAATGA 60.183 38.462 0.00 0.00 0.00 2.57
3414 3991 5.991606 GGGAACAAAAGGAAGAGGAAAAATG 59.008 40.000 0.00 0.00 0.00 2.32
3415 3992 5.665360 TGGGAACAAAAGGAAGAGGAAAAAT 59.335 36.000 0.00 0.00 37.44 1.82
3416 3993 5.026790 TGGGAACAAAAGGAAGAGGAAAAA 58.973 37.500 0.00 0.00 37.44 1.94
3501 4088 3.595190 AATAGGGGGAATAAGCACCAC 57.405 47.619 0.00 0.00 31.00 4.16
3598 4187 3.981211 AGCAACTTTTACACAAGGCATG 58.019 40.909 0.00 0.00 0.00 4.06
3601 4190 5.183014 AGTAAGCAACTTTTACACAAGGC 57.817 39.130 0.00 0.00 33.35 4.35
3614 4203 6.312918 TCGAACAATGGAGAATAGTAAGCAAC 59.687 38.462 0.00 0.00 0.00 4.17
3615 4204 6.312918 GTCGAACAATGGAGAATAGTAAGCAA 59.687 38.462 0.00 0.00 0.00 3.91
3627 4216 8.611757 TGTATGATAAAATGTCGAACAATGGAG 58.388 33.333 0.00 0.00 0.00 3.86
3633 4222 7.798801 ACGTTTGTATGATAAAATGTCGAACA 58.201 30.769 0.00 0.00 31.47 3.18
3638 4227 9.685005 GTGTAGACGTTTGTATGATAAAATGTC 57.315 33.333 16.18 16.18 45.98 3.06
3649 4238 2.728690 TGCCGTGTAGACGTTTGTAT 57.271 45.000 11.79 0.00 44.54 2.29
3652 4241 2.732500 TGTATTGCCGTGTAGACGTTTG 59.267 45.455 11.79 0.00 44.54 2.93
3653 4242 3.029320 TGTATTGCCGTGTAGACGTTT 57.971 42.857 11.79 0.00 44.54 3.60
3657 4246 4.393680 TGGAAAATGTATTGCCGTGTAGAC 59.606 41.667 0.00 0.00 0.00 2.59
3665 4254 5.405935 AGTCCTTTGGAAAATGTATTGCC 57.594 39.130 0.00 0.00 31.38 4.52
3714 4304 1.379527 GTGGGCGCAAAGTAGCTAAT 58.620 50.000 10.83 0.00 0.00 1.73
3715 4305 0.675522 GGTGGGCGCAAAGTAGCTAA 60.676 55.000 10.83 0.00 0.00 3.09
3716 4306 1.078708 GGTGGGCGCAAAGTAGCTA 60.079 57.895 10.83 0.00 0.00 3.32
3727 4317 4.420168 CAAATGTACTTTAATGGTGGGCG 58.580 43.478 0.00 0.00 0.00 6.13
3732 4322 7.049799 ACTTGTGCAAATGTACTTTAATGGT 57.950 32.000 3.38 0.00 0.00 3.55
3733 4323 7.945033 AACTTGTGCAAATGTACTTTAATGG 57.055 32.000 0.00 0.00 0.00 3.16
3738 4328 8.200792 TCCAATAAACTTGTGCAAATGTACTTT 58.799 29.630 0.00 0.00 0.00 2.66
3739 4329 7.721402 TCCAATAAACTTGTGCAAATGTACTT 58.279 30.769 0.00 0.00 0.00 2.24
3741 4331 7.367285 TCTCCAATAAACTTGTGCAAATGTAC 58.633 34.615 0.00 0.00 0.00 2.90
3742 4332 7.517614 TCTCCAATAAACTTGTGCAAATGTA 57.482 32.000 0.00 0.00 0.00 2.29
3759 4349 6.222389 TGTTTTGAAATTTCGCATCTCCAAT 58.778 32.000 13.34 0.00 0.00 3.16
3761 4351 5.193663 TGTTTTGAAATTTCGCATCTCCA 57.806 34.783 13.34 1.53 0.00 3.86
3820 4417 5.883503 TTGTTTTGGAGTTCTACAAACGT 57.116 34.783 9.41 0.00 36.42 3.99
3821 4418 6.491394 TCATTGTTTTGGAGTTCTACAAACG 58.509 36.000 9.41 0.00 36.42 3.60
3826 4423 9.394477 GTTACATTCATTGTTTTGGAGTTCTAC 57.606 33.333 0.00 0.00 39.87 2.59
3834 4431 7.359097 CCGATTGTGTTACATTCATTGTTTTGG 60.359 37.037 0.00 0.00 39.87 3.28
3840 4437 4.104776 GCCCGATTGTGTTACATTCATTG 58.895 43.478 0.00 0.00 30.26 2.82
3845 4442 2.487762 CACTGCCCGATTGTGTTACATT 59.512 45.455 0.00 0.00 0.00 2.71
3851 4448 0.685097 ACTACACTGCCCGATTGTGT 59.315 50.000 0.00 0.00 45.39 3.72
3852 4449 1.078709 CACTACACTGCCCGATTGTG 58.921 55.000 0.00 0.00 37.67 3.33
3858 4455 2.665649 TTCATACACTACACTGCCCG 57.334 50.000 0.00 0.00 0.00 6.13
3860 4457 5.468746 TGAAAGTTTCATACACTACACTGCC 59.531 40.000 14.35 0.00 34.08 4.85
3861 4458 6.423905 TCTGAAAGTTTCATACACTACACTGC 59.576 38.462 18.35 0.00 39.30 4.40
3863 4460 8.958119 TTTCTGAAAGTTTCATACACTACACT 57.042 30.769 18.35 0.00 39.30 3.55
3883 4480 3.815401 ACCCGAACTTGTCTGATTTTCTG 59.185 43.478 0.00 0.00 0.00 3.02
3885 4482 4.830826 AACCCGAACTTGTCTGATTTTC 57.169 40.909 0.00 0.00 0.00 2.29
3887 4484 4.642885 TCAAAACCCGAACTTGTCTGATTT 59.357 37.500 0.00 0.00 0.00 2.17
3893 4490 3.128068 AGTTGTCAAAACCCGAACTTGTC 59.872 43.478 0.00 0.00 0.00 3.18
3895 4492 3.127895 TGAGTTGTCAAAACCCGAACTTG 59.872 43.478 0.00 0.00 0.00 3.16
3897 4494 2.943033 CTGAGTTGTCAAAACCCGAACT 59.057 45.455 0.00 0.00 30.14 3.01
3908 4505 1.483004 TCCCGTGAAACTGAGTTGTCA 59.517 47.619 0.00 2.50 31.75 3.58
3909 4506 2.135933 CTCCCGTGAAACTGAGTTGTC 58.864 52.381 0.00 0.00 31.30 3.18
3910 4507 1.202651 CCTCCCGTGAAACTGAGTTGT 60.203 52.381 0.00 0.00 33.23 3.32
3911 4508 1.202651 ACCTCCCGTGAAACTGAGTTG 60.203 52.381 0.00 0.00 33.23 3.16
3912 4509 1.129058 ACCTCCCGTGAAACTGAGTT 58.871 50.000 0.00 0.00 33.23 3.01
3913 4510 1.617357 GTACCTCCCGTGAAACTGAGT 59.383 52.381 0.00 0.00 33.23 3.41
3914 4511 1.893801 AGTACCTCCCGTGAAACTGAG 59.106 52.381 0.00 0.00 34.40 3.35
3915 4512 2.005370 AGTACCTCCCGTGAAACTGA 57.995 50.000 0.00 0.00 31.75 3.41
3916 4513 2.833631 AAGTACCTCCCGTGAAACTG 57.166 50.000 0.00 0.00 31.75 3.16
3917 4514 3.851458 AAAAGTACCTCCCGTGAAACT 57.149 42.857 0.00 0.00 31.75 2.66
3937 4534 0.397254 TCCAAGAACCCCCGCAAAAA 60.397 50.000 0.00 0.00 0.00 1.94
3938 4535 0.397254 TTCCAAGAACCCCCGCAAAA 60.397 50.000 0.00 0.00 0.00 2.44
3939 4536 0.825840 CTTCCAAGAACCCCCGCAAA 60.826 55.000 0.00 0.00 0.00 3.68
3940 4537 1.228429 CTTCCAAGAACCCCCGCAA 60.228 57.895 0.00 0.00 0.00 4.85
3941 4538 2.434331 CTTCCAAGAACCCCCGCA 59.566 61.111 0.00 0.00 0.00 5.69
3942 4539 1.844544 TACCTTCCAAGAACCCCCGC 61.845 60.000 0.00 0.00 0.00 6.13
3943 4540 0.916809 ATACCTTCCAAGAACCCCCG 59.083 55.000 0.00 0.00 0.00 5.73
3944 4541 1.920351 TGATACCTTCCAAGAACCCCC 59.080 52.381 0.00 0.00 0.00 5.40
3945 4542 3.459969 AGATGATACCTTCCAAGAACCCC 59.540 47.826 0.00 0.00 0.00 4.95
3946 4543 4.410555 AGAGATGATACCTTCCAAGAACCC 59.589 45.833 0.00 0.00 0.00 4.11
3947 4544 5.104735 ACAGAGATGATACCTTCCAAGAACC 60.105 44.000 0.00 0.00 0.00 3.62
3948 4545 5.983540 ACAGAGATGATACCTTCCAAGAAC 58.016 41.667 0.00 0.00 0.00 3.01
3949 4546 5.960811 AGACAGAGATGATACCTTCCAAGAA 59.039 40.000 0.00 0.00 0.00 2.52
3950 4547 5.523588 AGACAGAGATGATACCTTCCAAGA 58.476 41.667 0.00 0.00 0.00 3.02
3951 4548 5.362143 TGAGACAGAGATGATACCTTCCAAG 59.638 44.000 0.00 0.00 0.00 3.61
3952 4549 5.272402 TGAGACAGAGATGATACCTTCCAA 58.728 41.667 0.00 0.00 0.00 3.53
3953 4550 4.871822 TGAGACAGAGATGATACCTTCCA 58.128 43.478 0.00 0.00 0.00 3.53
3954 4551 5.596361 TCTTGAGACAGAGATGATACCTTCC 59.404 44.000 0.00 0.00 0.00 3.46
3955 4552 6.707440 TCTTGAGACAGAGATGATACCTTC 57.293 41.667 0.00 0.00 0.00 3.46
3956 4553 6.667414 ACTTCTTGAGACAGAGATGATACCTT 59.333 38.462 0.00 0.00 0.00 3.50
3957 4554 6.194235 ACTTCTTGAGACAGAGATGATACCT 58.806 40.000 0.00 0.00 0.00 3.08
3958 4555 6.463995 ACTTCTTGAGACAGAGATGATACC 57.536 41.667 0.00 0.00 0.00 2.73
3959 4556 8.898761 TCTTACTTCTTGAGACAGAGATGATAC 58.101 37.037 0.00 0.00 0.00 2.24
3960 4557 8.898761 GTCTTACTTCTTGAGACAGAGATGATA 58.101 37.037 0.00 0.00 39.59 2.15
3961 4558 7.415095 CGTCTTACTTCTTGAGACAGAGATGAT 60.415 40.741 0.00 0.00 39.74 2.45
3962 4559 6.128145 CGTCTTACTTCTTGAGACAGAGATGA 60.128 42.308 0.00 0.00 39.74 2.92
3963 4560 6.027131 CGTCTTACTTCTTGAGACAGAGATG 58.973 44.000 0.00 0.00 39.74 2.90
3964 4561 5.708230 ACGTCTTACTTCTTGAGACAGAGAT 59.292 40.000 0.00 0.00 39.74 2.75
3965 4562 5.064558 ACGTCTTACTTCTTGAGACAGAGA 58.935 41.667 0.00 0.00 39.74 3.10
3966 4563 5.365403 ACGTCTTACTTCTTGAGACAGAG 57.635 43.478 0.00 0.00 39.74 3.35
3967 4564 5.769484 AACGTCTTACTTCTTGAGACAGA 57.231 39.130 0.00 0.00 39.74 3.41
3968 4565 6.697892 AGAAAACGTCTTACTTCTTGAGACAG 59.302 38.462 0.00 0.00 39.74 3.51
3969 4566 6.475727 CAGAAAACGTCTTACTTCTTGAGACA 59.524 38.462 0.00 0.00 39.74 3.41
3970 4567 6.696148 TCAGAAAACGTCTTACTTCTTGAGAC 59.304 38.462 0.00 0.00 37.13 3.36
3971 4568 6.696148 GTCAGAAAACGTCTTACTTCTTGAGA 59.304 38.462 0.00 0.00 32.70 3.27
3972 4569 6.475727 TGTCAGAAAACGTCTTACTTCTTGAG 59.524 38.462 0.00 0.00 32.70 3.02
3973 4570 6.334989 TGTCAGAAAACGTCTTACTTCTTGA 58.665 36.000 0.00 0.00 32.70 3.02
3974 4571 6.583912 TGTCAGAAAACGTCTTACTTCTTG 57.416 37.500 0.00 0.00 32.70 3.02
3975 4572 7.787725 AATGTCAGAAAACGTCTTACTTCTT 57.212 32.000 0.00 0.00 32.70 2.52
3976 4573 8.926710 CATAATGTCAGAAAACGTCTTACTTCT 58.073 33.333 0.00 0.00 32.70 2.85
3977 4574 8.922676 TCATAATGTCAGAAAACGTCTTACTTC 58.077 33.333 0.00 0.00 32.70 3.01
3978 4575 8.827177 TCATAATGTCAGAAAACGTCTTACTT 57.173 30.769 0.00 0.00 32.70 2.24
3981 4578 9.031360 GCTATCATAATGTCAGAAAACGTCTTA 57.969 33.333 0.00 0.00 32.70 2.10
3982 4579 7.254117 CGCTATCATAATGTCAGAAAACGTCTT 60.254 37.037 0.00 0.00 32.70 3.01
3983 4580 6.199154 CGCTATCATAATGTCAGAAAACGTCT 59.801 38.462 0.00 0.00 36.88 4.18
3984 4581 6.019801 ACGCTATCATAATGTCAGAAAACGTC 60.020 38.462 0.00 0.00 0.00 4.34
3985 4582 5.810587 ACGCTATCATAATGTCAGAAAACGT 59.189 36.000 0.00 0.00 0.00 3.99
3986 4583 6.274001 ACGCTATCATAATGTCAGAAAACG 57.726 37.500 0.00 0.00 0.00 3.60
3987 4584 9.982291 TTTAACGCTATCATAATGTCAGAAAAC 57.018 29.630 0.00 0.00 0.00 2.43
4019 4616 7.554959 ACTCCCTCTGTCTTAAAATGTAAGA 57.445 36.000 0.00 0.00 0.00 2.10
4020 4617 9.892130 AATACTCCCTCTGTCTTAAAATGTAAG 57.108 33.333 0.00 0.00 0.00 2.34
4023 4620 9.892130 CTAAATACTCCCTCTGTCTTAAAATGT 57.108 33.333 0.00 0.00 0.00 2.71
4024 4621 9.892130 ACTAAATACTCCCTCTGTCTTAAAATG 57.108 33.333 0.00 0.00 0.00 2.32
4026 4623 9.720769 CAACTAAATACTCCCTCTGTCTTAAAA 57.279 33.333 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.