Multiple sequence alignment - TraesCS4B01G287300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G287300 | chr4B | 100.000 | 5510 | 0 | 0 | 1 | 5510 | 570740792 | 570735283 | 0.000000e+00 | 10176.0 |
1 | TraesCS4B01G287300 | chr4B | 98.137 | 161 | 3 | 0 | 1579 | 1739 | 570739054 | 570738894 | 1.170000e-71 | 281.0 |
2 | TraesCS4B01G287300 | chr4B | 98.137 | 161 | 3 | 0 | 1739 | 1899 | 570739214 | 570739054 | 1.170000e-71 | 281.0 |
3 | TraesCS4B01G287300 | chr4A | 94.852 | 2331 | 78 | 22 | 2378 | 4681 | 11361729 | 11364044 | 0.000000e+00 | 3602.0 |
4 | TraesCS4B01G287300 | chr4A | 91.198 | 1102 | 51 | 15 | 1 | 1083 | 11360304 | 11361378 | 0.000000e+00 | 1456.0 |
5 | TraesCS4B01G287300 | chr4A | 94.237 | 642 | 23 | 6 | 4762 | 5395 | 11364087 | 11364722 | 0.000000e+00 | 968.0 |
6 | TraesCS4B01G287300 | chr4A | 90.625 | 192 | 12 | 3 | 1 | 189 | 11326992 | 11327180 | 3.300000e-62 | 250.0 |
7 | TraesCS4B01G287300 | chr4D | 95.205 | 1710 | 68 | 4 | 2281 | 3978 | 456496486 | 456494779 | 0.000000e+00 | 2691.0 |
8 | TraesCS4B01G287300 | chr4D | 95.881 | 1408 | 46 | 5 | 3999 | 5395 | 456494795 | 456493389 | 0.000000e+00 | 2268.0 |
9 | TraesCS4B01G287300 | chr4D | 92.716 | 1112 | 48 | 16 | 1 | 1100 | 456497842 | 456496752 | 0.000000e+00 | 1574.0 |
10 | TraesCS4B01G287300 | chr4D | 95.690 | 116 | 5 | 0 | 5395 | 5510 | 456493360 | 456493245 | 2.620000e-43 | 187.0 |
11 | TraesCS4B01G287300 | chr4D | 82.759 | 203 | 19 | 8 | 1217 | 1405 | 456496715 | 456496515 | 3.410000e-37 | 167.0 |
12 | TraesCS4B01G287300 | chr7B | 93.687 | 396 | 16 | 6 | 1856 | 2246 | 687546109 | 687545718 | 7.950000e-163 | 584.0 |
13 | TraesCS4B01G287300 | chr7B | 91.304 | 299 | 21 | 3 | 1406 | 1704 | 687546456 | 687546163 | 2.390000e-108 | 403.0 |
14 | TraesCS4B01G287300 | chr7B | 89.683 | 126 | 11 | 2 | 1739 | 1864 | 687546286 | 687546163 | 5.710000e-35 | 159.0 |
15 | TraesCS4B01G287300 | chr7B | 100.000 | 44 | 0 | 0 | 1696 | 1739 | 687546109 | 687546066 | 1.270000e-11 | 82.4 |
16 | TraesCS4B01G287300 | chr5B | 93.216 | 398 | 19 | 3 | 1857 | 2250 | 447268222 | 447268615 | 3.700000e-161 | 579.0 |
17 | TraesCS4B01G287300 | chr5B | 92.150 | 293 | 21 | 1 | 1403 | 1695 | 447267868 | 447268158 | 3.970000e-111 | 412.0 |
18 | TraesCS4B01G287300 | chr5B | 95.294 | 85 | 4 | 0 | 1103 | 1187 | 21154091 | 21154007 | 9.630000e-28 | 135.0 |
19 | TraesCS4B01G287300 | chr5B | 88.350 | 103 | 12 | 0 | 1096 | 1198 | 604056368 | 604056470 | 2.080000e-24 | 124.0 |
20 | TraesCS4B01G287300 | chr5B | 100.000 | 43 | 0 | 0 | 1697 | 1739 | 447268222 | 447268264 | 4.580000e-11 | 80.5 |
21 | TraesCS4B01G287300 | chr2B | 92.443 | 397 | 22 | 4 | 1856 | 2248 | 136957598 | 136957206 | 1.340000e-155 | 560.0 |
22 | TraesCS4B01G287300 | chr2B | 93.667 | 300 | 16 | 1 | 1405 | 1704 | 136957948 | 136957652 | 3.920000e-121 | 446.0 |
23 | TraesCS4B01G287300 | chr2B | 93.333 | 90 | 4 | 2 | 1103 | 1192 | 483452954 | 483453041 | 1.250000e-26 | 132.0 |
24 | TraesCS4B01G287300 | chr2B | 97.727 | 44 | 1 | 0 | 1696 | 1739 | 136957598 | 136957555 | 5.920000e-10 | 76.8 |
25 | TraesCS4B01G287300 | chr7A | 91.832 | 404 | 20 | 6 | 1856 | 2250 | 735109976 | 735109577 | 8.070000e-153 | 551.0 |
26 | TraesCS4B01G287300 | chr7A | 89.868 | 227 | 18 | 4 | 2028 | 2253 | 108748809 | 108748587 | 2.510000e-73 | 287.0 |
27 | TraesCS4B01G287300 | chr7A | 92.063 | 126 | 10 | 0 | 1739 | 1864 | 735110155 | 735110030 | 1.580000e-40 | 178.0 |
28 | TraesCS4B01G287300 | chr7A | 89.683 | 126 | 13 | 0 | 1739 | 1864 | 108750055 | 108749930 | 1.590000e-35 | 161.0 |
29 | TraesCS4B01G287300 | chr6B | 91.155 | 407 | 19 | 6 | 1857 | 2250 | 62389322 | 62389724 | 2.260000e-148 | 536.0 |
30 | TraesCS4B01G287300 | chr6B | 90.727 | 399 | 26 | 4 | 1857 | 2250 | 715710055 | 715709663 | 6.330000e-144 | 521.0 |
31 | TraesCS4B01G287300 | chr6B | 94.483 | 290 | 14 | 1 | 1406 | 1695 | 62388972 | 62389259 | 3.920000e-121 | 446.0 |
32 | TraesCS4B01G287300 | chr6B | 93.645 | 299 | 16 | 2 | 1406 | 1704 | 715710405 | 715710110 | 1.410000e-120 | 444.0 |
33 | TraesCS4B01G287300 | chr6B | 93.162 | 117 | 6 | 1 | 1739 | 1855 | 62389145 | 62389259 | 2.640000e-38 | 171.0 |
34 | TraesCS4B01G287300 | chr6B | 89.683 | 126 | 10 | 2 | 1739 | 1864 | 715710232 | 715710110 | 2.050000e-34 | 158.0 |
35 | TraesCS4B01G287300 | chr6B | 95.238 | 84 | 4 | 0 | 1103 | 1186 | 642350237 | 642350320 | 3.460000e-27 | 134.0 |
36 | TraesCS4B01G287300 | chr6B | 90.909 | 99 | 8 | 1 | 1100 | 1198 | 447890609 | 447890706 | 1.250000e-26 | 132.0 |
37 | TraesCS4B01G287300 | chr6B | 97.674 | 43 | 1 | 0 | 1697 | 1739 | 62389322 | 62389364 | 2.130000e-09 | 75.0 |
38 | TraesCS4B01G287300 | chr6A | 87.940 | 398 | 32 | 8 | 1856 | 2252 | 567344910 | 567345292 | 6.510000e-124 | 455.0 |
39 | TraesCS4B01G287300 | chr6A | 89.831 | 295 | 25 | 3 | 1406 | 1695 | 567344552 | 567344846 | 1.870000e-99 | 374.0 |
40 | TraesCS4B01G287300 | chr6A | 87.879 | 297 | 29 | 2 | 1409 | 1704 | 203218663 | 203218953 | 5.290000e-90 | 342.0 |
41 | TraesCS4B01G287300 | chr6A | 88.889 | 126 | 14 | 0 | 1739 | 1864 | 203218828 | 203218953 | 7.390000e-34 | 156.0 |
42 | TraesCS4B01G287300 | chr3A | 87.595 | 395 | 37 | 7 | 1856 | 2250 | 746320376 | 746320758 | 1.090000e-121 | 448.0 |
43 | TraesCS4B01G287300 | chr3A | 89.384 | 292 | 31 | 0 | 1404 | 1695 | 746320023 | 746320314 | 8.720000e-98 | 368.0 |
44 | TraesCS4B01G287300 | chr3A | 89.320 | 103 | 8 | 3 | 1093 | 1195 | 57262244 | 57262145 | 5.790000e-25 | 126.0 |
45 | TraesCS4B01G287300 | chr2A | 87.960 | 299 | 30 | 1 | 1406 | 1704 | 126567111 | 126566819 | 1.140000e-91 | 348.0 |
46 | TraesCS4B01G287300 | chr2A | 89.954 | 219 | 19 | 2 | 2035 | 2253 | 126566090 | 126565875 | 4.200000e-71 | 279.0 |
47 | TraesCS4B01G287300 | chr2A | 90.476 | 126 | 12 | 0 | 1739 | 1864 | 126566944 | 126566819 | 3.410000e-37 | 167.0 |
48 | TraesCS4B01G287300 | chr7D | 85.324 | 293 | 23 | 8 | 1856 | 2148 | 530906697 | 530906425 | 9.030000e-73 | 285.0 |
49 | TraesCS4B01G287300 | chr5A | 91.270 | 126 | 11 | 0 | 1739 | 1864 | 642138813 | 642138938 | 7.340000e-39 | 172.0 |
50 | TraesCS4B01G287300 | chr1D | 91.667 | 96 | 5 | 2 | 1103 | 1198 | 59867945 | 59868037 | 4.480000e-26 | 130.0 |
51 | TraesCS4B01G287300 | chr1D | 88.889 | 99 | 5 | 3 | 1104 | 1201 | 366246135 | 366246228 | 3.490000e-22 | 117.0 |
52 | TraesCS4B01G287300 | chr1D | 97.368 | 38 | 1 | 0 | 1700 | 1737 | 369912239 | 369912202 | 1.280000e-06 | 65.8 |
53 | TraesCS4B01G287300 | chr2D | 90.526 | 95 | 9 | 0 | 1094 | 1188 | 208540136 | 208540230 | 5.790000e-25 | 126.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G287300 | chr4B | 570735283 | 570740792 | 5509 | True | 3579.333333 | 10176 | 98.758000 | 1 | 5510 | 3 | chr4B.!!$R1 | 5509 |
1 | TraesCS4B01G287300 | chr4A | 11360304 | 11364722 | 4418 | False | 2008.666667 | 3602 | 93.429000 | 1 | 5395 | 3 | chr4A.!!$F2 | 5394 |
2 | TraesCS4B01G287300 | chr4D | 456493245 | 456497842 | 4597 | True | 1377.400000 | 2691 | 92.450200 | 1 | 5510 | 5 | chr4D.!!$R1 | 5509 |
3 | TraesCS4B01G287300 | chr7B | 687545718 | 687546456 | 738 | True | 307.100000 | 584 | 93.668500 | 1406 | 2246 | 4 | chr7B.!!$R1 | 840 |
4 | TraesCS4B01G287300 | chr5B | 447267868 | 447268615 | 747 | False | 357.166667 | 579 | 95.122000 | 1403 | 2250 | 3 | chr5B.!!$F2 | 847 |
5 | TraesCS4B01G287300 | chr2B | 136957206 | 136957948 | 742 | True | 360.933333 | 560 | 94.612333 | 1405 | 2248 | 3 | chr2B.!!$R1 | 843 |
6 | TraesCS4B01G287300 | chr7A | 735109577 | 735110155 | 578 | True | 364.500000 | 551 | 91.947500 | 1739 | 2250 | 2 | chr7A.!!$R2 | 511 |
7 | TraesCS4B01G287300 | chr7A | 108748587 | 108750055 | 1468 | True | 224.000000 | 287 | 89.775500 | 1739 | 2253 | 2 | chr7A.!!$R1 | 514 |
8 | TraesCS4B01G287300 | chr6B | 715709663 | 715710405 | 742 | True | 374.333333 | 521 | 91.351667 | 1406 | 2250 | 3 | chr6B.!!$R1 | 844 |
9 | TraesCS4B01G287300 | chr6B | 62388972 | 62389724 | 752 | False | 307.000000 | 536 | 94.118500 | 1406 | 2250 | 4 | chr6B.!!$F3 | 844 |
10 | TraesCS4B01G287300 | chr6A | 567344552 | 567345292 | 740 | False | 414.500000 | 455 | 88.885500 | 1406 | 2252 | 2 | chr6A.!!$F2 | 846 |
11 | TraesCS4B01G287300 | chr3A | 746320023 | 746320758 | 735 | False | 408.000000 | 448 | 88.489500 | 1404 | 2250 | 2 | chr3A.!!$F1 | 846 |
12 | TraesCS4B01G287300 | chr2A | 126565875 | 126567111 | 1236 | True | 264.666667 | 348 | 89.463333 | 1406 | 2253 | 3 | chr2A.!!$R1 | 847 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
953 | 985 | 0.108615 | AGTTCGCCTGTGGATCTTCG | 60.109 | 55.000 | 0.00 | 0.0 | 0.00 | 3.79 | F |
1717 | 1793 | 0.037326 | AGCCGCTCACAATTCTTCGA | 60.037 | 50.000 | 0.00 | 0.0 | 0.00 | 3.71 | F |
1718 | 1794 | 0.095417 | GCCGCTCACAATTCTTCGAC | 59.905 | 55.000 | 0.00 | 0.0 | 0.00 | 4.20 | F |
1720 | 1796 | 0.246912 | CGCTCACAATTCTTCGACGC | 60.247 | 55.000 | 0.00 | 0.0 | 0.00 | 5.19 | F |
1721 | 1797 | 1.071605 | GCTCACAATTCTTCGACGCT | 58.928 | 50.000 | 0.00 | 0.0 | 0.00 | 5.07 | F |
1722 | 1798 | 1.201855 | GCTCACAATTCTTCGACGCTG | 60.202 | 52.381 | 0.00 | 0.0 | 0.00 | 5.18 | F |
3583 | 4741 | 1.564348 | GGGCCATGTCTCCCTTCTTTA | 59.436 | 52.381 | 4.39 | 0.0 | 39.46 | 1.85 | F |
4260 | 5454 | 2.717639 | ATCCTAAGAAAGGCGCACAT | 57.282 | 45.000 | 10.83 | 0.0 | 46.10 | 3.21 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2274 | 3417 | 0.609681 | TGCAGCATGGCATGTTCTGA | 60.610 | 50.000 | 28.30 | 16.02 | 39.25 | 3.27 | R |
2609 | 3767 | 0.765135 | TTTCACCTTCTGTCCGGGGA | 60.765 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 | R |
2919 | 4077 | 2.275318 | CTCCGTCTGAGCAGGAAAATC | 58.725 | 52.381 | 0.00 | 0.00 | 33.47 | 2.17 | R |
3502 | 4660 | 2.693074 | TGTTGCGATATACTCTGGAGCA | 59.307 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 | R |
3613 | 4771 | 2.755103 | GGAAGACCCAACATCAACATCC | 59.245 | 50.000 | 0.00 | 0.00 | 34.14 | 3.51 | R |
3670 | 4828 | 3.335748 | AGGTATGGGATGATTTAGGCCA | 58.664 | 45.455 | 5.01 | 0.00 | 0.00 | 5.36 | R |
4416 | 5610 | 1.678970 | GCCCCTCATTGGCGACTTT | 60.679 | 57.895 | 0.00 | 0.00 | 39.48 | 2.66 | R |
5146 | 6353 | 5.048013 | TGTCGAGAAATGAGACACACTGTAT | 60.048 | 40.000 | 0.00 | 0.00 | 39.63 | 2.29 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 5.137551 | GGCTTTAATGGGCTAAATGGAGTA | 58.862 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
26 | 27 | 5.009710 | GGCTTTAATGGGCTAAATGGAGTAC | 59.990 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
30 | 31 | 9.349713 | CTTTAATGGGCTAAATGGAGTACAATA | 57.650 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
121 | 130 | 5.095490 | CGCATACTTTTGGCTTTAAGGAAG | 58.905 | 41.667 | 0.00 | 0.00 | 38.45 | 3.46 |
122 | 131 | 5.106317 | CGCATACTTTTGGCTTTAAGGAAGA | 60.106 | 40.000 | 0.00 | 0.00 | 37.57 | 2.87 |
123 | 132 | 6.569610 | CGCATACTTTTGGCTTTAAGGAAGAA | 60.570 | 38.462 | 0.00 | 0.00 | 37.57 | 2.52 |
139 | 148 | 4.452455 | AGGAAGAAGTAGCAATCAACAACG | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
243 | 254 | 1.134401 | ACCATCCAAGCGTACATCCAG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
247 | 258 | 0.806102 | CCAAGCGTACATCCAGACGG | 60.806 | 60.000 | 0.00 | 0.00 | 39.46 | 4.79 |
266 | 277 | 1.376553 | GTCTTCTCTGCACAGGGGC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
273 | 284 | 1.211457 | CTCTGCACAGGGGCTAAAGAT | 59.789 | 52.381 | 0.00 | 0.00 | 34.04 | 2.40 |
647 | 677 | 2.197324 | CGGAGGAGGAGGAGGAGG | 59.803 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
648 | 678 | 2.123033 | GGAGGAGGAGGAGGAGGC | 60.123 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
649 | 679 | 2.520741 | GAGGAGGAGGAGGAGGCG | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 5.52 |
650 | 680 | 4.150454 | AGGAGGAGGAGGAGGCGG | 62.150 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
651 | 681 | 4.144727 | GGAGGAGGAGGAGGCGGA | 62.145 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
652 | 682 | 2.520741 | GAGGAGGAGGAGGCGGAG | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
653 | 683 | 4.150454 | AGGAGGAGGAGGCGGAGG | 62.150 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
661 | 691 | 2.517166 | GAGGCGGAGGGGATTTGC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 3.68 |
697 | 727 | 2.398252 | TCTCGCTCGTTTCTCTCCTA | 57.602 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
746 | 777 | 2.416893 | GCGGATTTTTCTCCAGTCTCAC | 59.583 | 50.000 | 0.00 | 0.00 | 34.78 | 3.51 |
751 | 782 | 0.193574 | TTTCTCCAGTCTCACCCCCT | 59.806 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
781 | 812 | 2.865598 | CGGCGGAGATCAGCTGGAT | 61.866 | 63.158 | 15.13 | 6.11 | 39.30 | 3.41 |
953 | 985 | 0.108615 | AGTTCGCCTGTGGATCTTCG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1088 | 1126 | 2.753247 | CCTCTCTTACTACTTGCCCCT | 58.247 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1089 | 1127 | 3.912248 | CCTCTCTTACTACTTGCCCCTA | 58.088 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1091 | 1129 | 4.902448 | CCTCTCTTACTACTTGCCCCTAAT | 59.098 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
1093 | 1131 | 6.553852 | CCTCTCTTACTACTTGCCCCTAATTA | 59.446 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
1095 | 1133 | 7.963532 | TCTCTTACTACTTGCCCCTAATTATG | 58.036 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
1097 | 1135 | 8.097791 | TCTTACTACTTGCCCCTAATTATGTT | 57.902 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
1100 | 1138 | 7.404671 | ACTACTTGCCCCTAATTATGTTTTG | 57.595 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1101 | 1139 | 7.179269 | ACTACTTGCCCCTAATTATGTTTTGA | 58.821 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1102 | 1140 | 6.926630 | ACTTGCCCCTAATTATGTTTTGAA | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1103 | 1141 | 6.697395 | ACTTGCCCCTAATTATGTTTTGAAC | 58.303 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1104 | 1142 | 6.496911 | ACTTGCCCCTAATTATGTTTTGAACT | 59.503 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1105 | 1143 | 6.524101 | TGCCCCTAATTATGTTTTGAACTC | 57.476 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1106 | 1144 | 6.013379 | TGCCCCTAATTATGTTTTGAACTCA | 58.987 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1107 | 1145 | 6.071616 | TGCCCCTAATTATGTTTTGAACTCAC | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
1108 | 1146 | 6.152831 | GCCCCTAATTATGTTTTGAACTCACT | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1109 | 1147 | 7.628580 | GCCCCTAATTATGTTTTGAACTCACTC | 60.629 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
1110 | 1148 | 7.611855 | CCCCTAATTATGTTTTGAACTCACTCT | 59.388 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1111 | 1149 | 8.454106 | CCCTAATTATGTTTTGAACTCACTCTG | 58.546 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
1112 | 1150 | 9.003658 | CCTAATTATGTTTTGAACTCACTCTGT | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1117 | 1155 | 9.607988 | TTATGTTTTGAACTCACTCTGTAAAGA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
1118 | 1156 | 7.539712 | TGTTTTGAACTCACTCTGTAAAGAG | 57.460 | 36.000 | 8.50 | 8.50 | 41.45 | 2.85 |
1119 | 1157 | 7.327975 | TGTTTTGAACTCACTCTGTAAAGAGA | 58.672 | 34.615 | 17.23 | 0.00 | 39.14 | 3.10 |
1120 | 1158 | 7.987458 | TGTTTTGAACTCACTCTGTAAAGAGAT | 59.013 | 33.333 | 17.23 | 0.00 | 39.14 | 2.75 |
1121 | 1159 | 9.477484 | GTTTTGAACTCACTCTGTAAAGAGATA | 57.523 | 33.333 | 17.23 | 3.15 | 39.14 | 1.98 |
1128 | 1166 | 8.846211 | ACTCACTCTGTAAAGAGATATAAGAGC | 58.154 | 37.037 | 17.23 | 0.00 | 39.14 | 4.09 |
1129 | 1167 | 7.866729 | TCACTCTGTAAAGAGATATAAGAGCG | 58.133 | 38.462 | 17.23 | 0.00 | 39.14 | 5.03 |
1130 | 1168 | 7.499563 | TCACTCTGTAAAGAGATATAAGAGCGT | 59.500 | 37.037 | 17.23 | 0.00 | 39.14 | 5.07 |
1131 | 1169 | 8.132362 | CACTCTGTAAAGAGATATAAGAGCGTT | 58.868 | 37.037 | 17.23 | 0.00 | 39.14 | 4.84 |
1132 | 1170 | 8.688151 | ACTCTGTAAAGAGATATAAGAGCGTTT | 58.312 | 33.333 | 17.23 | 0.00 | 39.14 | 3.60 |
1139 | 1177 | 9.685828 | AAAGAGATATAAGAGCGTTTAGATCAC | 57.314 | 33.333 | 15.45 | 11.24 | 37.82 | 3.06 |
1140 | 1178 | 8.397575 | AGAGATATAAGAGCGTTTAGATCACA | 57.602 | 34.615 | 15.45 | 0.00 | 37.82 | 3.58 |
1141 | 1179 | 8.851145 | AGAGATATAAGAGCGTTTAGATCACAA | 58.149 | 33.333 | 15.45 | 0.00 | 37.82 | 3.33 |
1142 | 1180 | 8.804688 | AGATATAAGAGCGTTTAGATCACAAC | 57.195 | 34.615 | 15.45 | 0.00 | 37.82 | 3.32 |
1143 | 1181 | 8.634444 | AGATATAAGAGCGTTTAGATCACAACT | 58.366 | 33.333 | 15.45 | 0.00 | 37.82 | 3.16 |
1144 | 1182 | 9.250624 | GATATAAGAGCGTTTAGATCACAACTT | 57.749 | 33.333 | 10.86 | 0.00 | 37.82 | 2.66 |
1145 | 1183 | 7.907214 | ATAAGAGCGTTTAGATCACAACTTT | 57.093 | 32.000 | 0.00 | 0.00 | 37.82 | 2.66 |
1146 | 1184 | 8.997621 | ATAAGAGCGTTTAGATCACAACTTTA | 57.002 | 30.769 | 0.00 | 0.00 | 37.82 | 1.85 |
1147 | 1185 | 6.952935 | AGAGCGTTTAGATCACAACTTTAG | 57.047 | 37.500 | 0.00 | 0.00 | 37.82 | 1.85 |
1148 | 1186 | 6.456501 | AGAGCGTTTAGATCACAACTTTAGT | 58.543 | 36.000 | 0.00 | 0.00 | 37.82 | 2.24 |
1149 | 1187 | 6.366332 | AGAGCGTTTAGATCACAACTTTAGTG | 59.634 | 38.462 | 0.00 | 0.00 | 37.82 | 2.74 |
1161 | 1199 | 8.181487 | TCACAACTTTAGTGATCTATAAACGC | 57.819 | 34.615 | 0.00 | 0.00 | 40.80 | 4.84 |
1162 | 1200 | 8.033038 | TCACAACTTTAGTGATCTATAAACGCT | 58.967 | 33.333 | 0.00 | 0.00 | 40.80 | 5.07 |
1163 | 1201 | 8.321716 | CACAACTTTAGTGATCTATAAACGCTC | 58.678 | 37.037 | 0.00 | 0.00 | 39.30 | 5.03 |
1164 | 1202 | 8.251721 | ACAACTTTAGTGATCTATAAACGCTCT | 58.748 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
1165 | 1203 | 9.088512 | CAACTTTAGTGATCTATAAACGCTCTT | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1182 | 1220 | 8.649973 | AACGCTCTTATATTTCTTTACAGAGG | 57.350 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
1183 | 1221 | 7.210873 | ACGCTCTTATATTTCTTTACAGAGGG | 58.789 | 38.462 | 8.36 | 8.36 | 42.53 | 4.30 |
1184 | 1222 | 7.069578 | ACGCTCTTATATTTCTTTACAGAGGGA | 59.930 | 37.037 | 14.96 | 0.00 | 40.49 | 4.20 |
1185 | 1223 | 7.596995 | CGCTCTTATATTTCTTTACAGAGGGAG | 59.403 | 40.741 | 4.76 | 0.00 | 40.49 | 4.30 |
1186 | 1224 | 8.425703 | GCTCTTATATTTCTTTACAGAGGGAGT | 58.574 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1250 | 1299 | 2.360483 | TCGATTGCTTTGGCTGTTTTGA | 59.640 | 40.909 | 0.00 | 0.00 | 39.59 | 2.69 |
1256 | 1305 | 7.360269 | CGATTGCTTTGGCTGTTTTGATTATTT | 60.360 | 33.333 | 0.00 | 0.00 | 39.59 | 1.40 |
1258 | 1307 | 5.049543 | TGCTTTGGCTGTTTTGATTATTTGC | 60.050 | 36.000 | 0.00 | 0.00 | 39.59 | 3.68 |
1266 | 1330 | 7.041848 | GGCTGTTTTGATTATTTGCAGTTCTTT | 60.042 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1273 | 1337 | 8.020861 | TGATTATTTGCAGTTCTTTGATTTGC | 57.979 | 30.769 | 0.00 | 0.00 | 35.42 | 3.68 |
1301 | 1368 | 4.081365 | TGTTGAATTGAGAGGCGTACCATA | 60.081 | 41.667 | 0.00 | 0.00 | 39.06 | 2.74 |
1321 | 1390 | 6.949352 | CATATCTGGGGCAAATATGGATAC | 57.051 | 41.667 | 0.00 | 0.00 | 32.27 | 2.24 |
1350 | 1422 | 9.665719 | TGTTATGCATCTTACACTTCTATTTCA | 57.334 | 29.630 | 0.19 | 0.00 | 0.00 | 2.69 |
1372 | 1444 | 9.538508 | TTTCAGTCACTAGTTTTTACCTACTTC | 57.461 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1449 | 1523 | 7.894376 | ATTAAGTTCGTCGGAGTTTGATTAA | 57.106 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1604 | 1680 | 3.442625 | CGGCCCATAACTATCTACATCGA | 59.557 | 47.826 | 0.00 | 0.00 | 0.00 | 3.59 |
1652 | 1728 | 2.816958 | AACTCATCAGGCAGCGCG | 60.817 | 61.111 | 0.00 | 0.00 | 0.00 | 6.86 |
1670 | 1746 | 3.081409 | GCCGCCTCCTCAACCCTA | 61.081 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1671 | 1747 | 2.444256 | GCCGCCTCCTCAACCCTAT | 61.444 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
1672 | 1748 | 1.447643 | CCGCCTCCTCAACCCTATG | 59.552 | 63.158 | 0.00 | 0.00 | 0.00 | 2.23 |
1673 | 1749 | 1.227674 | CGCCTCCTCAACCCTATGC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 3.14 |
1674 | 1750 | 1.227674 | GCCTCCTCAACCCTATGCG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 4.73 |
1675 | 1751 | 1.686325 | GCCTCCTCAACCCTATGCGA | 61.686 | 60.000 | 0.00 | 0.00 | 0.00 | 5.10 |
1676 | 1752 | 1.051812 | CCTCCTCAACCCTATGCGAT | 58.948 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
1677 | 1753 | 1.270518 | CCTCCTCAACCCTATGCGATG | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 3.84 |
1678 | 1754 | 1.688735 | CTCCTCAACCCTATGCGATGA | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1679 | 1755 | 2.103094 | CTCCTCAACCCTATGCGATGAA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1680 | 1756 | 2.705658 | TCCTCAACCCTATGCGATGAAT | 59.294 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1681 | 1757 | 3.136443 | TCCTCAACCCTATGCGATGAATT | 59.864 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1682 | 1758 | 3.499918 | CCTCAACCCTATGCGATGAATTC | 59.500 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
1683 | 1759 | 4.129380 | CTCAACCCTATGCGATGAATTCA | 58.871 | 43.478 | 11.26 | 11.26 | 0.00 | 2.57 |
1684 | 1760 | 4.717877 | TCAACCCTATGCGATGAATTCAT | 58.282 | 39.130 | 20.85 | 20.85 | 39.70 | 2.57 |
1685 | 1761 | 4.756642 | TCAACCCTATGCGATGAATTCATC | 59.243 | 41.667 | 30.57 | 30.57 | 46.93 | 2.92 |
1696 | 1772 | 1.672363 | TGAATTCATCATCTGGTGCGC | 59.328 | 47.619 | 3.38 | 0.00 | 31.50 | 6.09 |
1697 | 1773 | 1.945394 | GAATTCATCATCTGGTGCGCT | 59.055 | 47.619 | 9.73 | 0.00 | 0.00 | 5.92 |
1698 | 1774 | 2.916702 | ATTCATCATCTGGTGCGCTA | 57.083 | 45.000 | 9.73 | 0.00 | 0.00 | 4.26 |
1699 | 1775 | 2.229675 | TTCATCATCTGGTGCGCTAG | 57.770 | 50.000 | 9.73 | 3.91 | 0.00 | 3.42 |
1700 | 1776 | 0.249615 | TCATCATCTGGTGCGCTAGC | 60.250 | 55.000 | 9.73 | 4.06 | 45.41 | 3.42 |
1701 | 1777 | 1.070445 | ATCATCTGGTGCGCTAGCC | 59.930 | 57.895 | 9.73 | 9.18 | 44.33 | 3.93 |
1702 | 1778 | 2.705934 | ATCATCTGGTGCGCTAGCCG | 62.706 | 60.000 | 9.73 | 5.65 | 44.33 | 5.52 |
1711 | 1787 | 3.799753 | CGCTAGCCGCTCACAATT | 58.200 | 55.556 | 9.66 | 0.00 | 36.13 | 2.32 |
1712 | 1788 | 1.638467 | CGCTAGCCGCTCACAATTC | 59.362 | 57.895 | 9.66 | 0.00 | 36.13 | 2.17 |
1713 | 1789 | 0.807667 | CGCTAGCCGCTCACAATTCT | 60.808 | 55.000 | 9.66 | 0.00 | 36.13 | 2.40 |
1714 | 1790 | 1.373570 | GCTAGCCGCTCACAATTCTT | 58.626 | 50.000 | 2.29 | 0.00 | 35.14 | 2.52 |
1715 | 1791 | 1.328986 | GCTAGCCGCTCACAATTCTTC | 59.671 | 52.381 | 2.29 | 0.00 | 35.14 | 2.87 |
1716 | 1792 | 1.590238 | CTAGCCGCTCACAATTCTTCG | 59.410 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
1717 | 1793 | 0.037326 | AGCCGCTCACAATTCTTCGA | 60.037 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1718 | 1794 | 0.095417 | GCCGCTCACAATTCTTCGAC | 59.905 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1719 | 1795 | 0.366871 | CCGCTCACAATTCTTCGACG | 59.633 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1720 | 1796 | 0.246912 | CGCTCACAATTCTTCGACGC | 60.247 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1721 | 1797 | 1.071605 | GCTCACAATTCTTCGACGCT | 58.928 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1722 | 1798 | 1.201855 | GCTCACAATTCTTCGACGCTG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
1723 | 1799 | 2.061773 | CTCACAATTCTTCGACGCTGT | 58.938 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1724 | 1800 | 2.476619 | CTCACAATTCTTCGACGCTGTT | 59.523 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1725 | 1801 | 2.869801 | TCACAATTCTTCGACGCTGTTT | 59.130 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
1726 | 1802 | 3.059868 | TCACAATTCTTCGACGCTGTTTC | 60.060 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
1727 | 1803 | 3.059597 | CACAATTCTTCGACGCTGTTTCT | 60.060 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1728 | 1804 | 4.149922 | CACAATTCTTCGACGCTGTTTCTA | 59.850 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
1729 | 1805 | 4.748102 | ACAATTCTTCGACGCTGTTTCTAA | 59.252 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
1730 | 1806 | 5.408604 | ACAATTCTTCGACGCTGTTTCTAAT | 59.591 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1731 | 1807 | 5.704217 | ATTCTTCGACGCTGTTTCTAATC | 57.296 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1732 | 1808 | 4.436242 | TCTTCGACGCTGTTTCTAATCT | 57.564 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1733 | 1809 | 4.413087 | TCTTCGACGCTGTTTCTAATCTC | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
1734 | 1810 | 4.156190 | TCTTCGACGCTGTTTCTAATCTCT | 59.844 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
1735 | 1811 | 4.017380 | TCGACGCTGTTTCTAATCTCTC | 57.983 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
1736 | 1812 | 3.109619 | CGACGCTGTTTCTAATCTCTCC | 58.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1737 | 1813 | 3.427638 | CGACGCTGTTTCTAATCTCTCCA | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1770 | 1846 | 5.243060 | CCATAACTATCTACATCGGTCCACA | 59.757 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1812 | 1893 | 2.816958 | AACTCATCAGGCAGCGCG | 60.817 | 61.111 | 0.00 | 0.00 | 0.00 | 6.86 |
1831 | 1912 | 2.444256 | GCCGCCTCCTCAACCCTAT | 61.444 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
1907 | 3022 | 9.958180 | TGTTTCTAATCTCTCCATTGTCAATAA | 57.042 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1973 | 3094 | 8.255206 | TCGTAGCAAATCCTACAGAAAAATAGA | 58.745 | 33.333 | 0.00 | 0.00 | 38.03 | 1.98 |
2000 | 3125 | 3.057174 | CGACATCTAGCACCTAAGGATCC | 60.057 | 52.174 | 2.48 | 2.48 | 0.00 | 3.36 |
2059 | 3186 | 2.045561 | TCTCTCTCGTGGAGTGATCC | 57.954 | 55.000 | 7.71 | 0.00 | 42.40 | 3.36 |
2083 | 3217 | 3.570975 | TCAGTATGTGTTCCGTGTGTAGT | 59.429 | 43.478 | 0.00 | 0.00 | 37.40 | 2.73 |
2091 | 3225 | 5.123661 | TGTGTTCCGTGTGTAGTAATCGATA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2134 | 3276 | 4.220602 | CGTGGGATCTTTTTCATTTTCCCT | 59.779 | 41.667 | 7.29 | 0.00 | 42.74 | 4.20 |
2274 | 3417 | 7.959152 | TCCTATTTTTGTCCCCCTTTCTTATTT | 59.041 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2275 | 3418 | 8.258007 | CCTATTTTTGTCCCCCTTTCTTATTTC | 58.742 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2276 | 3419 | 7.625498 | ATTTTTGTCCCCCTTTCTTATTTCA | 57.375 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2278 | 3421 | 5.592587 | TTGTCCCCCTTTCTTATTTCAGA | 57.407 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
2326 | 3484 | 9.372369 | AGAACATTAATTTCTTCTTAGGTCTCG | 57.628 | 33.333 | 6.92 | 0.00 | 28.36 | 4.04 |
2342 | 3500 | 9.460906 | CTTAGGTCTCGTATACTTCAAATTACC | 57.539 | 37.037 | 0.56 | 0.00 | 0.00 | 2.85 |
2345 | 3503 | 6.460123 | GGTCTCGTATACTTCAAATTACCCGA | 60.460 | 42.308 | 0.56 | 0.00 | 0.00 | 5.14 |
2346 | 3504 | 6.636044 | GTCTCGTATACTTCAAATTACCCGAG | 59.364 | 42.308 | 0.56 | 0.00 | 39.38 | 4.63 |
2349 | 3507 | 6.319658 | TCGTATACTTCAAATTACCCGAGAGT | 59.680 | 38.462 | 0.56 | 0.00 | 0.00 | 3.24 |
2359 | 3517 | 8.658609 | TCAAATTACCCGAGAGTAAATAAAACG | 58.341 | 33.333 | 0.00 | 0.00 | 35.90 | 3.60 |
2360 | 3518 | 7.543947 | AATTACCCGAGAGTAAATAAAACGG | 57.456 | 36.000 | 0.00 | 0.00 | 35.90 | 4.44 |
2363 | 3521 | 4.931601 | ACCCGAGAGTAAATAAAACGGAAC | 59.068 | 41.667 | 0.00 | 0.00 | 41.09 | 3.62 |
2409 | 3567 | 2.093553 | GCAGAGAGCTCCTTCAGTTCAT | 60.094 | 50.000 | 10.93 | 0.00 | 41.15 | 2.57 |
2412 | 3570 | 5.531634 | CAGAGAGCTCCTTCAGTTCATATC | 58.468 | 45.833 | 10.93 | 0.00 | 34.79 | 1.63 |
2419 | 3577 | 6.070309 | AGCTCCTTCAGTTCATATCTTCAGTT | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2490 | 3648 | 3.535280 | TTCCTTTGTTTCTTGTTGGGC | 57.465 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
2603 | 3761 | 4.448537 | GCCATCTATAAGAGATCGCAGT | 57.551 | 45.455 | 0.00 | 0.00 | 45.36 | 4.40 |
2609 | 3767 | 1.769026 | TAAGAGATCGCAGTGAGCCT | 58.231 | 50.000 | 0.00 | 0.00 | 41.38 | 4.58 |
2612 | 3770 | 2.107953 | GATCGCAGTGAGCCTCCC | 59.892 | 66.667 | 0.00 | 0.00 | 41.38 | 4.30 |
2624 | 3782 | 2.284699 | CCTCCCCGGACAGAAGGT | 60.285 | 66.667 | 0.73 | 0.00 | 33.16 | 3.50 |
2690 | 3848 | 7.156876 | TGATCTTAAAAATGCGACCAAGAAT | 57.843 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2919 | 4077 | 7.063780 | GCTATTTTTCATGTTTCCTGATGGTTG | 59.936 | 37.037 | 0.00 | 0.00 | 34.23 | 3.77 |
2999 | 4157 | 5.945784 | TGTTAAGCTCATTGGTTATTGCTCT | 59.054 | 36.000 | 0.00 | 0.00 | 38.27 | 4.09 |
3085 | 4243 | 9.436957 | TCTGTTCAGAAGTATGTTCTTTAATCC | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3318 | 4476 | 5.694910 | TCAAACATTCTTCTTGACTCGGTAC | 59.305 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3579 | 4737 | 1.649271 | ATGGGGCCATGTCTCCCTTC | 61.649 | 60.000 | 4.39 | 2.10 | 42.25 | 3.46 |
3583 | 4741 | 1.564348 | GGGCCATGTCTCCCTTCTTTA | 59.436 | 52.381 | 4.39 | 0.00 | 39.46 | 1.85 |
3611 | 4769 | 5.237127 | GTCATGTGACATCAGTTCTGACAAA | 59.763 | 40.000 | 8.22 | 0.00 | 44.18 | 2.83 |
3612 | 4770 | 5.999600 | TCATGTGACATCAGTTCTGACAAAT | 59.000 | 36.000 | 4.58 | 0.00 | 0.00 | 2.32 |
3613 | 4771 | 5.678132 | TGTGACATCAGTTCTGACAAATG | 57.322 | 39.130 | 4.58 | 2.65 | 0.00 | 2.32 |
3634 | 4792 | 2.755103 | GGATGTTGATGTTGGGTCTTCC | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3708 | 4888 | 5.487488 | CCATACCTATGGTGAAGCCCTATTA | 59.513 | 44.000 | 3.44 | 0.00 | 46.42 | 0.98 |
3919 | 5102 | 9.931210 | CACTTTATTCCTATTAAATTCGACACC | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
4001 | 5184 | 6.500684 | ACTGTGCATAAGAAATGAACGAAT | 57.499 | 33.333 | 6.39 | 0.00 | 30.09 | 3.34 |
4002 | 5185 | 7.609760 | ACTGTGCATAAGAAATGAACGAATA | 57.390 | 32.000 | 6.39 | 0.00 | 30.09 | 1.75 |
4003 | 5186 | 8.213518 | ACTGTGCATAAGAAATGAACGAATAT | 57.786 | 30.769 | 6.39 | 0.00 | 30.09 | 1.28 |
4005 | 5188 | 9.507280 | CTGTGCATAAGAAATGAACGAATATTT | 57.493 | 29.630 | 0.00 | 0.00 | 30.09 | 1.40 |
4260 | 5454 | 2.717639 | ATCCTAAGAAAGGCGCACAT | 57.282 | 45.000 | 10.83 | 0.00 | 46.10 | 3.21 |
4372 | 5566 | 7.448469 | AGCTCCAAGACTCTAAAAGCAATTTAA | 59.552 | 33.333 | 8.42 | 0.00 | 33.20 | 1.52 |
4416 | 5610 | 0.979187 | GGACCTCCAATACCGTCCCA | 60.979 | 60.000 | 0.00 | 0.00 | 39.13 | 4.37 |
4526 | 5720 | 7.531955 | TGCACTAGAAGCACACCTTAGAAGG | 62.532 | 48.000 | 6.77 | 6.77 | 43.76 | 3.46 |
4616 | 5810 | 3.507622 | GCTTCTTGCTCATTTGTAGGGTT | 59.492 | 43.478 | 0.00 | 0.00 | 38.95 | 4.11 |
4669 | 5865 | 7.986320 | TGATGAATTGTTTTTCACCAAATCTGT | 59.014 | 29.630 | 0.00 | 0.00 | 38.37 | 3.41 |
4735 | 5931 | 1.017387 | GCCGGGTTTATCTTCTGCAG | 58.983 | 55.000 | 7.63 | 7.63 | 0.00 | 4.41 |
4736 | 5932 | 1.406887 | GCCGGGTTTATCTTCTGCAGA | 60.407 | 52.381 | 13.74 | 13.74 | 35.33 | 4.26 |
4737 | 5933 | 2.280628 | CCGGGTTTATCTTCTGCAGAC | 58.719 | 52.381 | 18.03 | 3.09 | 32.83 | 3.51 |
4738 | 5934 | 2.354704 | CCGGGTTTATCTTCTGCAGACA | 60.355 | 50.000 | 18.03 | 6.45 | 32.83 | 3.41 |
4739 | 5935 | 3.535561 | CGGGTTTATCTTCTGCAGACAT | 58.464 | 45.455 | 18.03 | 13.92 | 32.83 | 3.06 |
4742 | 5941 | 5.128919 | GGGTTTATCTTCTGCAGACATGAT | 58.871 | 41.667 | 18.03 | 20.57 | 32.83 | 2.45 |
4753 | 5952 | 4.891260 | TGCAGACATGATACTGGATGATC | 58.109 | 43.478 | 0.00 | 0.00 | 35.05 | 2.92 |
4754 | 5953 | 4.252073 | GCAGACATGATACTGGATGATCC | 58.748 | 47.826 | 4.05 | 4.05 | 36.96 | 3.36 |
4755 | 5954 | 4.829968 | CAGACATGATACTGGATGATCCC | 58.170 | 47.826 | 9.36 | 0.00 | 35.03 | 3.85 |
4782 | 5981 | 3.134623 | TGACATGACAGAAACTGTGGACT | 59.865 | 43.478 | 9.15 | 0.00 | 45.44 | 3.85 |
4791 | 5990 | 0.037303 | AACTGTGGACTGGGAGCATG | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
5029 | 6236 | 6.189859 | TGAGCCTTGAATTTCAGGAATGTAT | 58.810 | 36.000 | 9.88 | 0.00 | 0.00 | 2.29 |
5115 | 6322 | 3.188460 | GGAGAACAAAAACAGCAGCGATA | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
5146 | 6353 | 2.325583 | CTGCTAAGGCGGGTAAATGA | 57.674 | 50.000 | 0.00 | 0.00 | 40.90 | 2.57 |
5307 | 6514 | 5.349061 | ACATCAGACAATCATACAGCTCA | 57.651 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
5311 | 6518 | 4.467438 | TCAGACAATCATACAGCTCAGGAA | 59.533 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
5315 | 6522 | 7.660617 | CAGACAATCATACAGCTCAGGAATAAT | 59.339 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
5326 | 6533 | 6.320672 | CAGCTCAGGAATAATTTGGTCAAGAT | 59.679 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
5489 | 6725 | 6.777580 | AGTTGTATGAGGTTTCATTTTCTGGT | 59.222 | 34.615 | 0.00 | 0.00 | 41.24 | 4.00 |
5501 | 6737 | 8.696410 | TTTCATTTTCTGGTGAAACTTTGTAC | 57.304 | 30.769 | 0.00 | 0.00 | 41.34 | 2.90 |
5506 | 6742 | 5.092554 | TCTGGTGAAACTTTGTACTGTGA | 57.907 | 39.130 | 0.00 | 0.00 | 36.74 | 3.58 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 4.972568 | TCCTATTGTACTCCATTTAGCCCA | 59.027 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
11 | 12 | 5.562298 | TCCTATTGTACTCCATTTAGCCC | 57.438 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
121 | 130 | 6.370593 | TGAATTCGTTGTTGATTGCTACTTC | 58.629 | 36.000 | 0.04 | 0.00 | 0.00 | 3.01 |
122 | 131 | 6.312399 | TGAATTCGTTGTTGATTGCTACTT | 57.688 | 33.333 | 0.04 | 0.00 | 0.00 | 2.24 |
123 | 132 | 5.940192 | TGAATTCGTTGTTGATTGCTACT | 57.060 | 34.783 | 0.04 | 0.00 | 0.00 | 2.57 |
139 | 148 | 6.200286 | CAGTCAATATGCTTTGCCATGAATTC | 59.800 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
243 | 254 | 0.389166 | CTGTGCAGAGAAGACCCGTC | 60.389 | 60.000 | 4.50 | 0.00 | 0.00 | 4.79 |
247 | 258 | 1.298014 | CCCCTGTGCAGAGAAGACC | 59.702 | 63.158 | 13.38 | 0.00 | 0.00 | 3.85 |
266 | 277 | 8.331022 | CGATATGTTTGAGTGTTCCATCTTTAG | 58.669 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
273 | 284 | 4.020573 | ACCTCGATATGTTTGAGTGTTCCA | 60.021 | 41.667 | 0.00 | 0.00 | 34.41 | 3.53 |
289 | 300 | 2.449031 | TTTGCGTGCAGGACCTCGAT | 62.449 | 55.000 | 11.29 | 0.00 | 0.00 | 3.59 |
438 | 449 | 2.291043 | GGGAGGAGGAGCAACGGAA | 61.291 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
645 | 675 | 2.616458 | AAGCAAATCCCCTCCGCCT | 61.616 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
646 | 676 | 2.043953 | AAGCAAATCCCCTCCGCC | 60.044 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
647 | 677 | 1.378514 | TCAAGCAAATCCCCTCCGC | 60.379 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
648 | 678 | 0.035056 | AGTCAAGCAAATCCCCTCCG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
649 | 679 | 2.222227 | AAGTCAAGCAAATCCCCTCC | 57.778 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
650 | 680 | 4.039124 | TCAAAAAGTCAAGCAAATCCCCTC | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
651 | 681 | 3.966665 | TCAAAAAGTCAAGCAAATCCCCT | 59.033 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
652 | 682 | 4.335400 | TCAAAAAGTCAAGCAAATCCCC | 57.665 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
653 | 683 | 4.212004 | GCTTCAAAAAGTCAAGCAAATCCC | 59.788 | 41.667 | 0.00 | 0.00 | 41.87 | 3.85 |
661 | 691 | 3.971240 | GCGAGAAGCTTCAAAAAGTCAAG | 59.029 | 43.478 | 27.57 | 5.63 | 44.04 | 3.02 |
685 | 715 | 0.992802 | GCAACGCTAGGAGAGAAACG | 59.007 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
746 | 777 | 2.356667 | GCCACTTGAAGGAGGGGG | 59.643 | 66.667 | 7.83 | 0.00 | 40.75 | 5.40 |
751 | 782 | 4.697756 | CCGCCGCCACTTGAAGGA | 62.698 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
781 | 812 | 0.179004 | TTTCTGGCGAGGCTTTTGGA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
893 | 925 | 1.856265 | CGGGTCAAGTCAGCAAAGCC | 61.856 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
919 | 951 | 1.404851 | CGAACTCTGCTCCTCTTTCCC | 60.405 | 57.143 | 0.00 | 0.00 | 0.00 | 3.97 |
953 | 985 | 2.954989 | GGATGAATGAGCTTCCTTTCCC | 59.045 | 50.000 | 0.00 | 0.00 | 32.49 | 3.97 |
1091 | 1129 | 9.607988 | TCTTTACAGAGTGAGTTCAAAACATAA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
1093 | 1131 | 7.987458 | TCTCTTTACAGAGTGAGTTCAAAACAT | 59.013 | 33.333 | 5.82 | 0.00 | 46.24 | 2.71 |
1095 | 1133 | 7.772332 | TCTCTTTACAGAGTGAGTTCAAAAC | 57.228 | 36.000 | 5.82 | 0.00 | 46.24 | 2.43 |
1102 | 1140 | 8.846211 | GCTCTTATATCTCTTTACAGAGTGAGT | 58.154 | 37.037 | 5.82 | 0.00 | 46.24 | 3.41 |
1103 | 1141 | 8.015087 | CGCTCTTATATCTCTTTACAGAGTGAG | 58.985 | 40.741 | 5.82 | 6.61 | 46.24 | 3.51 |
1104 | 1142 | 7.499563 | ACGCTCTTATATCTCTTTACAGAGTGA | 59.500 | 37.037 | 12.51 | 0.00 | 46.24 | 3.41 |
1105 | 1143 | 7.644490 | ACGCTCTTATATCTCTTTACAGAGTG | 58.356 | 38.462 | 5.82 | 0.00 | 46.24 | 3.51 |
1106 | 1144 | 7.811117 | ACGCTCTTATATCTCTTTACAGAGT | 57.189 | 36.000 | 5.82 | 0.00 | 46.24 | 3.24 |
1113 | 1151 | 9.685828 | GTGATCTAAACGCTCTTATATCTCTTT | 57.314 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1114 | 1152 | 8.851145 | TGTGATCTAAACGCTCTTATATCTCTT | 58.149 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1115 | 1153 | 8.397575 | TGTGATCTAAACGCTCTTATATCTCT | 57.602 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
1116 | 1154 | 8.907685 | GTTGTGATCTAAACGCTCTTATATCTC | 58.092 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
1117 | 1155 | 8.634444 | AGTTGTGATCTAAACGCTCTTATATCT | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1118 | 1156 | 8.804688 | AGTTGTGATCTAAACGCTCTTATATC | 57.195 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
1119 | 1157 | 9.601217 | AAAGTTGTGATCTAAACGCTCTTATAT | 57.399 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
1120 | 1158 | 8.997621 | AAAGTTGTGATCTAAACGCTCTTATA | 57.002 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
1121 | 1159 | 7.907214 | AAAGTTGTGATCTAAACGCTCTTAT | 57.093 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1122 | 1160 | 8.086522 | ACTAAAGTTGTGATCTAAACGCTCTTA | 58.913 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1123 | 1161 | 6.929606 | ACTAAAGTTGTGATCTAAACGCTCTT | 59.070 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
1124 | 1162 | 6.366332 | CACTAAAGTTGTGATCTAAACGCTCT | 59.634 | 38.462 | 0.00 | 0.00 | 37.60 | 4.09 |
1125 | 1163 | 6.365247 | TCACTAAAGTTGTGATCTAAACGCTC | 59.635 | 38.462 | 0.00 | 0.00 | 39.23 | 5.03 |
1126 | 1164 | 6.220930 | TCACTAAAGTTGTGATCTAAACGCT | 58.779 | 36.000 | 0.00 | 0.00 | 39.23 | 5.07 |
1127 | 1165 | 6.462073 | TCACTAAAGTTGTGATCTAAACGC | 57.538 | 37.500 | 0.00 | 0.00 | 39.23 | 4.84 |
1136 | 1174 | 8.033038 | AGCGTTTATAGATCACTAAAGTTGTGA | 58.967 | 33.333 | 0.00 | 0.00 | 46.58 | 3.58 |
1137 | 1175 | 8.186178 | AGCGTTTATAGATCACTAAAGTTGTG | 57.814 | 34.615 | 0.00 | 0.00 | 36.82 | 3.33 |
1138 | 1176 | 8.251721 | AGAGCGTTTATAGATCACTAAAGTTGT | 58.748 | 33.333 | 0.00 | 0.00 | 32.04 | 3.32 |
1139 | 1177 | 8.635877 | AGAGCGTTTATAGATCACTAAAGTTG | 57.364 | 34.615 | 0.00 | 0.00 | 32.04 | 3.16 |
1156 | 1194 | 9.099454 | CCTCTGTAAAGAAATATAAGAGCGTTT | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
1157 | 1195 | 7.711339 | CCCTCTGTAAAGAAATATAAGAGCGTT | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 4.84 |
1158 | 1196 | 7.069578 | TCCCTCTGTAAAGAAATATAAGAGCGT | 59.930 | 37.037 | 0.00 | 0.00 | 0.00 | 5.07 |
1159 | 1197 | 7.434492 | TCCCTCTGTAAAGAAATATAAGAGCG | 58.566 | 38.462 | 0.00 | 0.00 | 0.00 | 5.03 |
1160 | 1198 | 8.425703 | ACTCCCTCTGTAAAGAAATATAAGAGC | 58.574 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
1167 | 1205 | 9.710818 | ACATACTACTCCCTCTGTAAAGAAATA | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1168 | 1206 | 8.611051 | ACATACTACTCCCTCTGTAAAGAAAT | 57.389 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
1169 | 1207 | 9.710818 | ATACATACTACTCCCTCTGTAAAGAAA | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1170 | 1208 | 9.710818 | AATACATACTACTCCCTCTGTAAAGAA | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1171 | 1209 | 9.710818 | AAATACATACTACTCCCTCTGTAAAGA | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1172 | 1210 | 9.751542 | CAAATACATACTACTCCCTCTGTAAAG | 57.248 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
1173 | 1211 | 9.263446 | ACAAATACATACTACTCCCTCTGTAAA | 57.737 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
1174 | 1212 | 8.834004 | ACAAATACATACTACTCCCTCTGTAA | 57.166 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1175 | 1213 | 8.057011 | TGACAAATACATACTACTCCCTCTGTA | 58.943 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1176 | 1214 | 6.895756 | TGACAAATACATACTACTCCCTCTGT | 59.104 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1177 | 1215 | 7.068839 | ACTGACAAATACATACTACTCCCTCTG | 59.931 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
1178 | 1216 | 7.126733 | ACTGACAAATACATACTACTCCCTCT | 58.873 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
1179 | 1217 | 7.349412 | ACTGACAAATACATACTACTCCCTC | 57.651 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1180 | 1218 | 7.735326 | AACTGACAAATACATACTACTCCCT | 57.265 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1181 | 1219 | 8.258708 | AGAAACTGACAAATACATACTACTCCC | 58.741 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1190 | 1228 | 9.436957 | CAGGTAAGTAGAAACTGACAAATACAT | 57.563 | 33.333 | 0.00 | 0.00 | 38.70 | 2.29 |
1239 | 1288 | 5.212532 | ACTGCAAATAATCAAAACAGCCA | 57.787 | 34.783 | 0.00 | 0.00 | 0.00 | 4.75 |
1250 | 1299 | 8.611654 | AAGCAAATCAAAGAACTGCAAATAAT | 57.388 | 26.923 | 0.00 | 0.00 | 35.44 | 1.28 |
1256 | 1305 | 4.567558 | CACAAAGCAAATCAAAGAACTGCA | 59.432 | 37.500 | 0.00 | 0.00 | 35.44 | 4.41 |
1258 | 1307 | 6.310956 | TCAACACAAAGCAAATCAAAGAACTG | 59.689 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1266 | 1330 | 6.571605 | TCTCAATTCAACACAAAGCAAATCA | 58.428 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1273 | 1337 | 3.003689 | ACGCCTCTCAATTCAACACAAAG | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
1301 | 1368 | 3.662148 | TGGTATCCATATTTGCCCCAGAT | 59.338 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
1314 | 1383 | 7.391554 | GTGTAAGATGCATAACATGGTATCCAT | 59.608 | 37.037 | 6.90 | 6.90 | 46.37 | 3.41 |
1321 | 1390 | 6.932356 | AGAAGTGTAAGATGCATAACATGG | 57.068 | 37.500 | 0.00 | 0.00 | 39.84 | 3.66 |
1350 | 1422 | 7.282332 | ACGAAGTAGGTAAAAACTAGTGACT | 57.718 | 36.000 | 0.00 | 0.00 | 41.94 | 3.41 |
1372 | 1444 | 0.951040 | GAAGGTGCACCAGAGGAACG | 60.951 | 60.000 | 36.39 | 0.00 | 38.89 | 3.95 |
1449 | 1523 | 9.788960 | GTCAAGAAGAAATCAACTTTGTAGTTT | 57.211 | 29.630 | 0.00 | 0.00 | 41.85 | 2.66 |
1576 | 1652 | 3.511477 | AGATAGTTATGGGCCGATCACT | 58.489 | 45.455 | 17.39 | 17.39 | 0.00 | 3.41 |
1604 | 1680 | 2.180276 | GGTATAGATGGAGGCGTGGAT | 58.820 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1663 | 1739 | 5.039480 | GATGAATTCATCGCATAGGGTTG | 57.961 | 43.478 | 27.90 | 0.00 | 42.66 | 3.77 |
1676 | 1752 | 1.672363 | GCGCACCAGATGATGAATTCA | 59.328 | 47.619 | 11.26 | 11.26 | 39.12 | 2.57 |
1677 | 1753 | 1.945394 | AGCGCACCAGATGATGAATTC | 59.055 | 47.619 | 11.47 | 0.00 | 0.00 | 2.17 |
1678 | 1754 | 2.048444 | AGCGCACCAGATGATGAATT | 57.952 | 45.000 | 11.47 | 0.00 | 0.00 | 2.17 |
1679 | 1755 | 2.763933 | CTAGCGCACCAGATGATGAAT | 58.236 | 47.619 | 11.47 | 0.00 | 0.00 | 2.57 |
1680 | 1756 | 1.807755 | GCTAGCGCACCAGATGATGAA | 60.808 | 52.381 | 11.47 | 0.00 | 35.78 | 2.57 |
1681 | 1757 | 0.249615 | GCTAGCGCACCAGATGATGA | 60.250 | 55.000 | 11.47 | 0.00 | 35.78 | 2.92 |
1682 | 1758 | 1.226686 | GGCTAGCGCACCAGATGATG | 61.227 | 60.000 | 11.47 | 0.00 | 38.10 | 3.07 |
1683 | 1759 | 1.070445 | GGCTAGCGCACCAGATGAT | 59.930 | 57.895 | 11.47 | 0.00 | 38.10 | 2.45 |
1684 | 1760 | 2.501128 | GGCTAGCGCACCAGATGA | 59.499 | 61.111 | 11.47 | 0.00 | 38.10 | 2.92 |
1685 | 1761 | 2.963854 | CGGCTAGCGCACCAGATG | 60.964 | 66.667 | 11.47 | 0.00 | 38.10 | 2.90 |
1686 | 1762 | 4.899239 | GCGGCTAGCGCACCAGAT | 62.899 | 66.667 | 21.32 | 0.00 | 38.10 | 2.90 |
1696 | 1772 | 1.590238 | CGAAGAATTGTGAGCGGCTAG | 59.410 | 52.381 | 0.60 | 0.00 | 0.00 | 3.42 |
1697 | 1773 | 1.203758 | TCGAAGAATTGTGAGCGGCTA | 59.796 | 47.619 | 0.60 | 0.00 | 0.00 | 3.93 |
1698 | 1774 | 0.037326 | TCGAAGAATTGTGAGCGGCT | 60.037 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1699 | 1775 | 0.095417 | GTCGAAGAATTGTGAGCGGC | 59.905 | 55.000 | 0.00 | 0.00 | 39.69 | 6.53 |
1700 | 1776 | 0.366871 | CGTCGAAGAATTGTGAGCGG | 59.633 | 55.000 | 0.00 | 0.00 | 39.69 | 5.52 |
1701 | 1777 | 0.246912 | GCGTCGAAGAATTGTGAGCG | 60.247 | 55.000 | 1.37 | 0.00 | 39.69 | 5.03 |
1702 | 1778 | 1.071605 | AGCGTCGAAGAATTGTGAGC | 58.928 | 50.000 | 1.37 | 0.00 | 39.69 | 4.26 |
1703 | 1779 | 2.061773 | ACAGCGTCGAAGAATTGTGAG | 58.938 | 47.619 | 1.37 | 0.00 | 39.69 | 3.51 |
1704 | 1780 | 2.148916 | ACAGCGTCGAAGAATTGTGA | 57.851 | 45.000 | 1.37 | 0.00 | 39.69 | 3.58 |
1705 | 1781 | 2.949714 | AACAGCGTCGAAGAATTGTG | 57.050 | 45.000 | 1.37 | 0.00 | 39.69 | 3.33 |
1706 | 1782 | 3.131396 | AGAAACAGCGTCGAAGAATTGT | 58.869 | 40.909 | 1.37 | 0.24 | 39.69 | 2.71 |
1707 | 1783 | 3.795561 | AGAAACAGCGTCGAAGAATTG | 57.204 | 42.857 | 1.37 | 0.00 | 39.69 | 2.32 |
1708 | 1784 | 5.869888 | AGATTAGAAACAGCGTCGAAGAATT | 59.130 | 36.000 | 1.37 | 0.00 | 39.69 | 2.17 |
1709 | 1785 | 5.411781 | AGATTAGAAACAGCGTCGAAGAAT | 58.588 | 37.500 | 1.37 | 0.00 | 39.69 | 2.40 |
1710 | 1786 | 4.806330 | AGATTAGAAACAGCGTCGAAGAA | 58.194 | 39.130 | 1.37 | 0.00 | 39.69 | 2.52 |
1711 | 1787 | 4.156190 | AGAGATTAGAAACAGCGTCGAAGA | 59.844 | 41.667 | 1.37 | 0.00 | 0.00 | 2.87 |
1712 | 1788 | 4.416620 | AGAGATTAGAAACAGCGTCGAAG | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
1713 | 1789 | 4.413087 | GAGAGATTAGAAACAGCGTCGAA | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
1714 | 1790 | 3.181499 | GGAGAGATTAGAAACAGCGTCGA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
1715 | 1791 | 3.109619 | GGAGAGATTAGAAACAGCGTCG | 58.890 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1716 | 1792 | 4.111375 | TGGAGAGATTAGAAACAGCGTC | 57.889 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
1717 | 1793 | 4.160439 | TCATGGAGAGATTAGAAACAGCGT | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 5.07 |
1718 | 1794 | 4.686972 | TCATGGAGAGATTAGAAACAGCG | 58.313 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
1719 | 1795 | 5.404968 | CGATCATGGAGAGATTAGAAACAGC | 59.595 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1720 | 1796 | 5.925397 | CCGATCATGGAGAGATTAGAAACAG | 59.075 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1721 | 1797 | 5.740224 | GCCGATCATGGAGAGATTAGAAACA | 60.740 | 44.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1722 | 1798 | 4.688413 | GCCGATCATGGAGAGATTAGAAAC | 59.312 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
1723 | 1799 | 4.262635 | GGCCGATCATGGAGAGATTAGAAA | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
1724 | 1800 | 3.259374 | GGCCGATCATGGAGAGATTAGAA | 59.741 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
1725 | 1801 | 2.828520 | GGCCGATCATGGAGAGATTAGA | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1726 | 1802 | 2.093764 | GGGCCGATCATGGAGAGATTAG | 60.094 | 54.545 | 0.00 | 0.00 | 0.00 | 1.73 |
1727 | 1803 | 1.902508 | GGGCCGATCATGGAGAGATTA | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
1728 | 1804 | 0.689623 | GGGCCGATCATGGAGAGATT | 59.310 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1729 | 1805 | 0.472543 | TGGGCCGATCATGGAGAGAT | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1730 | 1806 | 0.472543 | ATGGGCCGATCATGGAGAGA | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1731 | 1807 | 1.269958 | TATGGGCCGATCATGGAGAG | 58.730 | 55.000 | 2.36 | 0.00 | 0.00 | 3.20 |
1732 | 1808 | 1.347707 | GTTATGGGCCGATCATGGAGA | 59.652 | 52.381 | 2.36 | 0.00 | 0.00 | 3.71 |
1733 | 1809 | 1.349026 | AGTTATGGGCCGATCATGGAG | 59.651 | 52.381 | 2.36 | 0.00 | 0.00 | 3.86 |
1734 | 1810 | 1.434188 | AGTTATGGGCCGATCATGGA | 58.566 | 50.000 | 2.36 | 0.00 | 0.00 | 3.41 |
1735 | 1811 | 3.198635 | AGATAGTTATGGGCCGATCATGG | 59.801 | 47.826 | 2.36 | 0.00 | 0.00 | 3.66 |
1736 | 1812 | 4.478206 | AGATAGTTATGGGCCGATCATG | 57.522 | 45.455 | 2.36 | 0.00 | 0.00 | 3.07 |
1737 | 1813 | 5.023452 | TGTAGATAGTTATGGGCCGATCAT | 58.977 | 41.667 | 2.36 | 0.09 | 0.00 | 2.45 |
1770 | 1846 | 2.379226 | ACGGCTAGGTATAGATGGAGGT | 59.621 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1831 | 1912 | 2.204237 | CCAGATGATGAATTCGTCGCA | 58.796 | 47.619 | 20.10 | 7.25 | 43.90 | 5.10 |
1973 | 3094 | 0.747255 | AGGTGCTAGATGTCGCGATT | 59.253 | 50.000 | 14.06 | 2.40 | 0.00 | 3.34 |
2059 | 3186 | 3.325870 | ACACACGGAACACATACTGATG | 58.674 | 45.455 | 0.00 | 0.00 | 39.16 | 3.07 |
2083 | 3217 | 7.677454 | ACACAGGTCGTATACATATCGATTA | 57.323 | 36.000 | 1.71 | 0.00 | 36.08 | 1.75 |
2091 | 3225 | 3.691118 | ACGTGTACACAGGTCGTATACAT | 59.309 | 43.478 | 24.98 | 0.00 | 40.49 | 2.29 |
2134 | 3276 | 6.392625 | AGCGTAAGAGATGATTAGTGCTAA | 57.607 | 37.500 | 0.00 | 0.00 | 43.02 | 3.09 |
2253 | 3396 | 6.841755 | TCTGAAATAAGAAAGGGGGACAAAAA | 59.158 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
2254 | 3397 | 6.377912 | TCTGAAATAAGAAAGGGGGACAAAA | 58.622 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2255 | 3398 | 5.959512 | TCTGAAATAAGAAAGGGGGACAAA | 58.040 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2256 | 3399 | 5.592587 | TCTGAAATAAGAAAGGGGGACAA | 57.407 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2257 | 3400 | 5.163034 | TGTTCTGAAATAAGAAAGGGGGACA | 60.163 | 40.000 | 0.00 | 0.00 | 37.90 | 4.02 |
2258 | 3401 | 5.321927 | TGTTCTGAAATAAGAAAGGGGGAC | 58.678 | 41.667 | 0.00 | 0.00 | 37.90 | 4.46 |
2274 | 3417 | 0.609681 | TGCAGCATGGCATGTTCTGA | 60.610 | 50.000 | 28.30 | 16.02 | 39.25 | 3.27 |
2275 | 3418 | 1.887301 | TGCAGCATGGCATGTTCTG | 59.113 | 52.632 | 26.94 | 24.69 | 39.25 | 3.02 |
2276 | 3419 | 4.426971 | TGCAGCATGGCATGTTCT | 57.573 | 50.000 | 26.94 | 14.69 | 39.25 | 3.01 |
2323 | 3481 | 6.732154 | TCTCGGGTAATTTGAAGTATACGAG | 58.268 | 40.000 | 15.06 | 15.06 | 38.10 | 4.18 |
2325 | 3483 | 6.501781 | ACTCTCGGGTAATTTGAAGTATACG | 58.498 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2326 | 3484 | 9.807649 | TTTACTCTCGGGTAATTTGAAGTATAC | 57.192 | 33.333 | 0.00 | 0.00 | 32.64 | 1.47 |
2340 | 3498 | 4.806640 | TCCGTTTTATTTACTCTCGGGT | 57.193 | 40.909 | 0.00 | 0.00 | 37.54 | 5.28 |
2342 | 3500 | 6.716898 | AAGTTCCGTTTTATTTACTCTCGG | 57.283 | 37.500 | 0.00 | 0.00 | 38.16 | 4.63 |
2354 | 3512 | 9.917129 | AATTCCGAATTAAATAAGTTCCGTTTT | 57.083 | 25.926 | 4.46 | 0.00 | 0.00 | 2.43 |
2398 | 3556 | 7.912056 | TGAAACTGAAGATATGAACTGAAGG | 57.088 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2409 | 3567 | 9.567776 | TTCAGGTTTACAATGAAACTGAAGATA | 57.432 | 29.630 | 11.95 | 0.00 | 38.97 | 1.98 |
2412 | 3570 | 7.930217 | TCTTCAGGTTTACAATGAAACTGAAG | 58.070 | 34.615 | 26.75 | 26.75 | 38.97 | 3.02 |
2490 | 3648 | 3.806521 | GTCACTTTCGATGGATCTGATGG | 59.193 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
2603 | 3761 | 3.539593 | TTCTGTCCGGGGAGGCTCA | 62.540 | 63.158 | 17.69 | 0.00 | 40.77 | 4.26 |
2609 | 3767 | 0.765135 | TTTCACCTTCTGTCCGGGGA | 60.765 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2612 | 3770 | 2.744202 | CAAGATTTCACCTTCTGTCCGG | 59.256 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2624 | 3782 | 4.556233 | AGTTCGACGATGACAAGATTTCA | 58.444 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2919 | 4077 | 2.275318 | CTCCGTCTGAGCAGGAAAATC | 58.725 | 52.381 | 0.00 | 0.00 | 33.47 | 2.17 |
2999 | 4157 | 4.532126 | ACCAGAAGTCTGTTATCACCATCA | 59.468 | 41.667 | 7.51 | 0.00 | 42.27 | 3.07 |
3318 | 4476 | 8.196802 | TCAGAGTCAACATTATATTTCAACCG | 57.803 | 34.615 | 0.00 | 0.00 | 0.00 | 4.44 |
3502 | 4660 | 2.693074 | TGTTGCGATATACTCTGGAGCA | 59.307 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3604 | 4762 | 5.165676 | CCAACATCAACATCCATTTGTCAG | 58.834 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3611 | 4769 | 3.744940 | AGACCCAACATCAACATCCAT | 57.255 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
3612 | 4770 | 3.420893 | GAAGACCCAACATCAACATCCA | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3613 | 4771 | 2.755103 | GGAAGACCCAACATCAACATCC | 59.245 | 50.000 | 0.00 | 0.00 | 34.14 | 3.51 |
3634 | 4792 | 8.475639 | TCAACTTAGGTTTAGCTAATACAGAGG | 58.524 | 37.037 | 7.08 | 4.15 | 32.73 | 3.69 |
3662 | 4820 | 6.623329 | TGGGATGATTTAGGCCAGAAAATAT | 58.377 | 36.000 | 5.01 | 4.05 | 0.00 | 1.28 |
3670 | 4828 | 3.335748 | AGGTATGGGATGATTTAGGCCA | 58.664 | 45.455 | 5.01 | 0.00 | 0.00 | 5.36 |
3972 | 5155 | 9.935682 | CGTTCATTTCTTATGCACAGTATAATT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3975 | 5158 | 8.710835 | TTCGTTCATTTCTTATGCACAGTATA | 57.289 | 30.769 | 0.00 | 0.00 | 0.00 | 1.47 |
3979 | 5162 | 9.507280 | AAATATTCGTTCATTTCTTATGCACAG | 57.493 | 29.630 | 0.00 | 0.00 | 0.00 | 3.66 |
4191 | 5385 | 1.667830 | GTACAGCCTGCGCTTGTCA | 60.668 | 57.895 | 9.73 | 0.00 | 45.55 | 3.58 |
4359 | 5553 | 3.854809 | GCGGCGACATTAAATTGCTTTTA | 59.145 | 39.130 | 12.98 | 0.00 | 0.00 | 1.52 |
4372 | 5566 | 2.742372 | GTCAACCTGCGGCGACAT | 60.742 | 61.111 | 12.98 | 0.00 | 31.33 | 3.06 |
4407 | 5601 | 1.756408 | TTGGCGACTTTGGGACGGTA | 61.756 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4416 | 5610 | 1.678970 | GCCCCTCATTGGCGACTTT | 60.679 | 57.895 | 0.00 | 0.00 | 39.48 | 2.66 |
4517 | 5711 | 3.238597 | CATCTCTCTCCCCCTTCTAAGG | 58.761 | 54.545 | 1.47 | 1.47 | 46.06 | 2.69 |
4526 | 5720 | 2.296073 | ACGGATACATCTCTCTCCCC | 57.704 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
4616 | 5810 | 2.482316 | CCGTAGTCATATTCCGTGCCAA | 60.482 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4735 | 5931 | 5.221803 | ACAAGGGATCATCCAGTATCATGTC | 60.222 | 44.000 | 5.89 | 0.00 | 38.64 | 3.06 |
4736 | 5932 | 4.662179 | ACAAGGGATCATCCAGTATCATGT | 59.338 | 41.667 | 5.89 | 0.00 | 38.64 | 3.21 |
4737 | 5933 | 5.238624 | ACAAGGGATCATCCAGTATCATG | 57.761 | 43.478 | 5.89 | 0.00 | 38.64 | 3.07 |
4738 | 5934 | 5.370584 | TCAACAAGGGATCATCCAGTATCAT | 59.629 | 40.000 | 5.89 | 0.00 | 38.64 | 2.45 |
4739 | 5935 | 4.721274 | TCAACAAGGGATCATCCAGTATCA | 59.279 | 41.667 | 5.89 | 0.00 | 38.64 | 2.15 |
4742 | 5941 | 3.843619 | TGTCAACAAGGGATCATCCAGTA | 59.156 | 43.478 | 5.89 | 0.00 | 38.64 | 2.74 |
4753 | 5952 | 3.885297 | AGTTTCTGTCATGTCAACAAGGG | 59.115 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
4754 | 5953 | 4.336433 | ACAGTTTCTGTCATGTCAACAAGG | 59.664 | 41.667 | 0.00 | 0.00 | 41.21 | 3.61 |
4755 | 5954 | 5.268544 | CACAGTTTCTGTCATGTCAACAAG | 58.731 | 41.667 | 0.00 | 0.00 | 43.43 | 3.16 |
4782 | 5981 | 2.202236 | GAAGCCTGGACATGCTCCCA | 62.202 | 60.000 | 0.00 | 6.83 | 38.49 | 4.37 |
4791 | 5990 | 2.092323 | GGTAACCAATGAAGCCTGGAC | 58.908 | 52.381 | 0.00 | 0.00 | 36.49 | 4.02 |
4895 | 6101 | 1.829222 | AGGAATTGCAATTGCCTGAGG | 59.171 | 47.619 | 32.26 | 0.00 | 41.18 | 3.86 |
5029 | 6236 | 8.225416 | ACCCAAGAGACATACATCTAGTACATA | 58.775 | 37.037 | 0.00 | 0.00 | 35.05 | 2.29 |
5146 | 6353 | 5.048013 | TGTCGAGAAATGAGACACACTGTAT | 60.048 | 40.000 | 0.00 | 0.00 | 39.63 | 2.29 |
5326 | 6533 | 7.872138 | AGGATTCAAGGTTTATCATTGGTCTA | 58.128 | 34.615 | 0.00 | 0.00 | 38.23 | 2.59 |
5434 | 6670 | 7.391148 | AATCAACTGAGTACAAAGTGTTGTT | 57.609 | 32.000 | 0.00 | 0.00 | 46.01 | 2.83 |
5439 | 6675 | 6.483307 | TCTGGAAATCAACTGAGTACAAAGTG | 59.517 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.