Multiple sequence alignment - TraesCS4B01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G286300 chr4B 100.000 2851 0 0 1 2851 569767435 569764585 0.000000e+00 5265
1 TraesCS4B01G286300 chr4A 86.590 1126 121 20 989 2097 11771764 11772876 0.000000e+00 1216
2 TraesCS4B01G286300 chr4A 85.106 517 47 10 2355 2842 11772966 11773481 4.240000e-138 501
3 TraesCS4B01G286300 chr4A 93.805 113 6 1 3 114 11771020 11771132 4.880000e-38 169
4 TraesCS4B01G286300 chr4D 89.665 687 57 9 1422 2097 455763589 455762906 0.000000e+00 863
5 TraesCS4B01G286300 chr4D 91.391 453 38 1 889 1340 455764155 455763703 1.120000e-173 619
6 TraesCS4B01G286300 chr4D 79.636 879 96 56 1 842 455764972 455764140 3.210000e-154 555
7 TraesCS4B01G286300 chr4D 87.574 338 19 12 2508 2842 455761484 455761167 1.250000e-98 370
8 TraesCS4B01G286300 chr5A 94.444 198 7 2 2158 2352 82316527 82316723 4.620000e-78 302
9 TraesCS4B01G286300 chr3D 79.327 208 26 9 2159 2352 557246452 557246248 2.310000e-26 130
10 TraesCS4B01G286300 chr7B 80.460 174 20 10 2155 2321 613643966 613644132 1.390000e-23 121
11 TraesCS4B01G286300 chr2B 92.208 77 4 2 2164 2238 12074686 12074610 1.080000e-19 108
12 TraesCS4B01G286300 chr6A 91.139 79 5 2 2157 2234 301748928 301749005 3.880000e-19 106
13 TraesCS4B01G286300 chr7A 91.781 73 3 2 2155 2225 714237658 714237729 6.500000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G286300 chr4B 569764585 569767435 2850 True 5265.000000 5265 100.000000 1 2851 1 chr4B.!!$R1 2850
1 TraesCS4B01G286300 chr4A 11771020 11773481 2461 False 628.666667 1216 88.500333 3 2842 3 chr4A.!!$F1 2839
2 TraesCS4B01G286300 chr4D 455761167 455764972 3805 True 601.750000 863 87.066500 1 2842 4 chr4D.!!$R1 2841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 127 0.033991 TTAGCGGCCAGACTCTCTCT 60.034 55.0 2.24 0.0 0.00 3.10 F
1565 1888 0.179073 AGGAAATCTGTGGCGATCCG 60.179 55.0 0.00 0.0 34.14 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1924 0.109226 GTTGGACCGAGGACGAAGAG 60.109 60.0 0.0 0.0 42.66 2.85 R
2511 4042 0.470766 TTGGCCGGTGACTAAGTTGT 59.529 50.0 1.9 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 118 3.272334 GGCGTGATTAGCGGCCAG 61.272 66.667 2.24 0.00 46.90 4.85
117 119 2.202878 GCGTGATTAGCGGCCAGA 60.203 61.111 2.24 0.00 0.00 3.86
125 127 0.033991 TTAGCGGCCAGACTCTCTCT 60.034 55.000 2.24 0.00 0.00 3.10
129 131 2.003196 CGGCCAGACTCTCTCTTTTC 57.997 55.000 2.24 0.00 0.00 2.29
130 132 1.734047 CGGCCAGACTCTCTCTTTTCG 60.734 57.143 2.24 0.00 0.00 3.46
151 153 1.250154 TTTTTGGATGGAGGGCTGCG 61.250 55.000 0.00 0.00 0.00 5.18
152 154 3.643595 TTTGGATGGAGGGCTGCGG 62.644 63.158 0.00 0.00 0.00 5.69
168 170 4.863925 GGCCTCTCTCGTGCGCTC 62.864 72.222 9.73 3.51 0.00 5.03
169 171 3.821055 GCCTCTCTCGTGCGCTCT 61.821 66.667 9.73 0.00 0.00 4.09
170 172 2.101965 CCTCTCTCGTGCGCTCTG 59.898 66.667 9.73 1.74 0.00 3.35
171 173 2.695759 CCTCTCTCGTGCGCTCTGT 61.696 63.158 9.73 0.00 0.00 3.41
176 335 3.057547 CTCGTGCGCTCTGTAGGCT 62.058 63.158 9.73 0.00 0.00 4.58
191 350 2.982026 GGCTTGATGGGCCTTTTCT 58.018 52.632 4.53 0.00 45.57 2.52
218 386 1.298014 CTGGAGCCCAAGTGGTCTC 59.702 63.158 0.00 0.00 36.87 3.36
220 388 1.298014 GGAGCCCAAGTGGTCTCAG 59.702 63.158 10.37 0.00 38.37 3.35
221 389 1.298014 GAGCCCAAGTGGTCTCAGG 59.702 63.158 3.52 0.00 37.29 3.86
222 390 2.360475 GCCCAAGTGGTCTCAGGC 60.360 66.667 0.00 0.00 35.59 4.85
223 391 2.900106 GCCCAAGTGGTCTCAGGCT 61.900 63.158 0.00 0.00 38.18 4.58
224 392 1.298014 CCCAAGTGGTCTCAGGCTC 59.702 63.158 0.00 0.00 0.00 4.70
225 393 1.197430 CCCAAGTGGTCTCAGGCTCT 61.197 60.000 0.00 0.00 0.00 4.09
226 394 0.689623 CCAAGTGGTCTCAGGCTCTT 59.310 55.000 0.00 0.00 0.00 2.85
227 395 1.902508 CCAAGTGGTCTCAGGCTCTTA 59.097 52.381 0.00 0.00 0.00 2.10
228 396 2.093764 CCAAGTGGTCTCAGGCTCTTAG 60.094 54.545 0.00 0.00 0.00 2.18
229 397 1.190643 AGTGGTCTCAGGCTCTTAGC 58.809 55.000 0.00 0.00 41.46 3.09
253 421 0.386113 TTGGGCCTTGTAAACGTTGC 59.614 50.000 4.53 0.00 0.00 4.17
254 422 0.752009 TGGGCCTTGTAAACGTTGCA 60.752 50.000 4.53 1.04 0.00 4.08
255 423 0.318360 GGGCCTTGTAAACGTTGCAC 60.318 55.000 0.00 3.77 0.00 4.57
269 438 2.258755 GTTGCACGTTGCTCTGTTTTT 58.741 42.857 10.54 0.00 45.31 1.94
270 439 2.187351 TGCACGTTGCTCTGTTTTTC 57.813 45.000 10.54 0.00 45.31 2.29
271 440 1.112459 GCACGTTGCTCTGTTTTTCG 58.888 50.000 0.00 0.00 40.96 3.46
272 441 1.112459 CACGTTGCTCTGTTTTTCGC 58.888 50.000 0.00 0.00 0.00 4.70
273 442 0.315869 ACGTTGCTCTGTTTTTCGCG 60.316 50.000 0.00 0.00 0.00 5.87
274 443 0.315869 CGTTGCTCTGTTTTTCGCGT 60.316 50.000 5.77 0.00 0.00 6.01
277 446 0.863144 TGCTCTGTTTTTCGCGTACC 59.137 50.000 5.77 0.00 0.00 3.34
278 447 1.145803 GCTCTGTTTTTCGCGTACCT 58.854 50.000 5.77 0.00 0.00 3.08
284 453 1.196127 GTTTTTCGCGTACCTTGGAGG 59.804 52.381 5.77 0.00 42.49 4.30
285 454 0.680618 TTTTCGCGTACCTTGGAGGA 59.319 50.000 5.77 0.00 37.67 3.71
288 457 0.896940 TCGCGTACCTTGGAGGAGTT 60.897 55.000 5.77 0.00 37.67 3.01
289 458 0.458025 CGCGTACCTTGGAGGAGTTC 60.458 60.000 0.00 0.00 37.67 3.01
290 459 0.896226 GCGTACCTTGGAGGAGTTCT 59.104 55.000 0.07 0.00 37.67 3.01
292 461 2.448453 CGTACCTTGGAGGAGTTCTCT 58.552 52.381 0.00 0.00 42.10 3.10
299 494 4.322650 CCTTGGAGGAGTTCTCTCTCAAAG 60.323 50.000 18.15 18.15 42.10 2.77
320 515 0.402887 AAAAACCCGTACCCTGGAGG 59.597 55.000 0.00 0.00 43.78 4.30
322 517 0.908180 AAACCCGTACCCTGGAGGAG 60.908 60.000 0.00 0.00 39.89 3.69
324 519 1.757340 CCCGTACCCTGGAGGAGTC 60.757 68.421 0.00 0.00 39.89 3.36
325 520 1.757340 CCGTACCCTGGAGGAGTCC 60.757 68.421 0.00 0.00 44.24 3.85
346 544 1.992233 GATTTTGGATGAGGCGCGCA 61.992 55.000 34.42 13.69 0.00 6.09
433 663 0.594028 GCGGATTCGTCGACAGCATA 60.594 55.000 17.16 0.00 38.89 3.14
436 666 0.772926 GATTCGTCGACAGCATAGCG 59.227 55.000 17.16 0.00 0.00 4.26
475 705 4.831307 CGGCGACTTCGGACCTCG 62.831 72.222 0.00 0.00 40.23 4.63
478 708 4.831307 CGACTTCGGACCTCGCGG 62.831 72.222 6.13 0.00 39.05 6.46
549 803 2.202946 TGACGCAGCGACCAACAA 60.203 55.556 24.65 0.00 0.00 2.83
560 814 2.198406 CGACCAACAAAGTGAGTTCGA 58.802 47.619 0.00 0.00 0.00 3.71
562 816 3.985279 CGACCAACAAAGTGAGTTCGATA 59.015 43.478 0.00 0.00 0.00 2.92
569 823 6.910536 ACAAAGTGAGTTCGATATGAATCC 57.089 37.500 0.00 0.00 39.21 3.01
572 826 8.258007 ACAAAGTGAGTTCGATATGAATCCTTA 58.742 33.333 0.00 0.00 39.21 2.69
574 828 7.825331 AGTGAGTTCGATATGAATCCTTAGA 57.175 36.000 0.00 0.00 39.21 2.10
580 834 7.287927 AGTTCGATATGAATCCTTAGACTCCAA 59.712 37.037 0.00 0.00 39.21 3.53
589 843 3.706594 TCCTTAGACTCCAACTAGGCATG 59.293 47.826 0.00 0.00 37.29 4.06
610 864 4.998788 TGTCTCTGTCTGATGGTTATTCG 58.001 43.478 0.00 0.00 0.00 3.34
611 865 4.705023 TGTCTCTGTCTGATGGTTATTCGA 59.295 41.667 0.00 0.00 0.00 3.71
612 866 5.163612 TGTCTCTGTCTGATGGTTATTCGAG 60.164 44.000 0.00 0.00 0.00 4.04
613 867 5.066634 GTCTCTGTCTGATGGTTATTCGAGA 59.933 44.000 0.00 0.00 0.00 4.04
614 868 5.652452 TCTCTGTCTGATGGTTATTCGAGAA 59.348 40.000 0.00 0.00 0.00 2.87
615 869 6.152831 TCTCTGTCTGATGGTTATTCGAGAAA 59.847 38.462 0.00 0.00 0.00 2.52
616 870 6.697395 TCTGTCTGATGGTTATTCGAGAAAA 58.303 36.000 0.00 0.00 0.00 2.29
617 871 7.158697 TCTGTCTGATGGTTATTCGAGAAAAA 58.841 34.615 0.00 0.00 0.00 1.94
642 896 8.862550 AAAAATCTGTCTGATGAGAAACAAAC 57.137 30.769 0.00 0.00 35.21 2.93
643 897 5.852738 ATCTGTCTGATGAGAAACAAACG 57.147 39.130 0.00 0.00 33.43 3.60
644 898 3.494626 TCTGTCTGATGAGAAACAAACGC 59.505 43.478 0.00 0.00 0.00 4.84
645 899 3.466836 TGTCTGATGAGAAACAAACGCT 58.533 40.909 0.00 0.00 0.00 5.07
646 900 3.494626 TGTCTGATGAGAAACAAACGCTC 59.505 43.478 0.00 0.00 0.00 5.03
652 906 4.316205 TGAGAAACAAACGCTCACTCTA 57.684 40.909 0.00 0.00 34.02 2.43
672 926 5.742063 TCTAGAGTCTAGAATCGTGACCAA 58.258 41.667 24.66 0.57 0.00 3.67
673 927 6.358178 TCTAGAGTCTAGAATCGTGACCAAT 58.642 40.000 24.66 0.00 0.00 3.16
674 928 5.508200 AGAGTCTAGAATCGTGACCAATC 57.492 43.478 14.10 0.00 0.00 2.67
683 937 1.303091 CGTGACCAATCGAAACCCCC 61.303 60.000 0.00 0.00 0.00 5.40
698 952 1.143073 ACCCCCAACTCTGAGTTCAAC 59.857 52.381 19.65 0.00 36.03 3.18
721 975 0.969149 TAGTCCAGTCAGTGTGCCTG 59.031 55.000 0.00 0.00 42.97 4.85
756 1010 3.596310 TCATTGGTCAAATGCCATGTG 57.404 42.857 0.00 0.00 44.63 3.21
759 1013 3.834489 TTGGTCAAATGCCATGTGTTT 57.166 38.095 0.00 0.00 35.71 2.83
760 1014 3.109044 TGGTCAAATGCCATGTGTTTG 57.891 42.857 0.00 7.85 34.90 2.93
761 1015 1.799994 GGTCAAATGCCATGTGTTTGC 59.200 47.619 0.00 0.00 33.90 3.68
762 1016 2.481854 GTCAAATGCCATGTGTTTGCA 58.518 42.857 0.00 3.56 39.68 4.08
763 1017 2.221517 GTCAAATGCCATGTGTTTGCAC 59.778 45.455 0.00 0.00 45.44 4.57
764 1018 2.102757 TCAAATGCCATGTGTTTGCACT 59.897 40.909 0.00 0.00 45.44 4.40
765 1019 2.157834 AATGCCATGTGTTTGCACTG 57.842 45.000 0.00 0.00 45.44 3.66
789 1043 5.181433 GGGCTTGTTTTTCTACTACTCCTTG 59.819 44.000 0.00 0.00 0.00 3.61
790 1044 5.995897 GGCTTGTTTTTCTACTACTCCTTGA 59.004 40.000 0.00 0.00 0.00 3.02
791 1045 6.073167 GGCTTGTTTTTCTACTACTCCTTGAC 60.073 42.308 0.00 0.00 0.00 3.18
816 1071 2.792878 ACTAGCTAACTCTGTCGGTGT 58.207 47.619 0.00 0.00 0.00 4.16
833 1088 4.695455 TCGGTGTTCATCAGAGGAAAATTC 59.305 41.667 0.00 0.00 0.00 2.17
834 1089 4.455533 CGGTGTTCATCAGAGGAAAATTCA 59.544 41.667 0.00 0.00 0.00 2.57
835 1090 5.617751 CGGTGTTCATCAGAGGAAAATTCAC 60.618 44.000 0.00 3.68 0.00 3.18
836 1091 5.241506 GGTGTTCATCAGAGGAAAATTCACA 59.758 40.000 14.61 1.07 0.00 3.58
837 1092 6.376978 GTGTTCATCAGAGGAAAATTCACAG 58.623 40.000 0.00 0.00 0.00 3.66
838 1093 5.474532 TGTTCATCAGAGGAAAATTCACAGG 59.525 40.000 0.00 0.00 0.00 4.00
839 1094 4.592942 TCATCAGAGGAAAATTCACAGGG 58.407 43.478 0.00 0.00 0.00 4.45
840 1095 4.043310 TCATCAGAGGAAAATTCACAGGGT 59.957 41.667 0.00 0.00 0.00 4.34
841 1096 3.754965 TCAGAGGAAAATTCACAGGGTG 58.245 45.455 0.00 0.00 34.45 4.61
842 1097 2.229784 CAGAGGAAAATTCACAGGGTGC 59.770 50.000 0.00 0.00 32.98 5.01
843 1098 1.546029 GAGGAAAATTCACAGGGTGCC 59.454 52.381 0.00 0.00 32.98 5.01
844 1099 0.243636 GGAAAATTCACAGGGTGCCG 59.756 55.000 0.00 0.00 32.98 5.69
845 1100 0.243636 GAAAATTCACAGGGTGCCGG 59.756 55.000 0.00 0.00 32.98 6.13
846 1101 0.469144 AAAATTCACAGGGTGCCGGT 60.469 50.000 1.90 0.00 32.98 5.28
848 1103 4.947147 TTCACAGGGTGCCGGTGC 62.947 66.667 1.90 0.00 46.46 5.01
856 1111 4.323477 GTGCCGGTGCCACCACTA 62.323 66.667 15.45 0.00 41.75 2.74
857 1112 4.015406 TGCCGGTGCCACCACTAG 62.015 66.667 15.45 0.08 41.75 2.57
858 1113 4.778143 GCCGGTGCCACCACTAGG 62.778 72.222 15.45 7.94 41.75 3.02
871 1126 2.571212 CCACTAGGTGTTTTGCACTGA 58.429 47.619 0.00 0.00 46.86 3.41
872 1127 2.948979 CCACTAGGTGTTTTGCACTGAA 59.051 45.455 0.00 0.00 46.86 3.02
873 1128 3.569701 CCACTAGGTGTTTTGCACTGAAT 59.430 43.478 0.00 0.00 46.86 2.57
874 1129 4.037923 CCACTAGGTGTTTTGCACTGAATT 59.962 41.667 0.00 0.00 46.86 2.17
875 1130 4.977963 CACTAGGTGTTTTGCACTGAATTG 59.022 41.667 0.00 0.00 46.86 2.32
876 1131 4.644685 ACTAGGTGTTTTGCACTGAATTGT 59.355 37.500 0.00 0.00 46.86 2.71
877 1132 4.470334 AGGTGTTTTGCACTGAATTGTT 57.530 36.364 0.00 0.00 46.86 2.83
878 1133 4.432712 AGGTGTTTTGCACTGAATTGTTC 58.567 39.130 0.00 0.00 46.86 3.18
879 1134 4.160252 AGGTGTTTTGCACTGAATTGTTCT 59.840 37.500 0.00 0.00 46.86 3.01
880 1135 4.869861 GGTGTTTTGCACTGAATTGTTCTT 59.130 37.500 0.00 0.00 46.86 2.52
881 1136 5.005682 GGTGTTTTGCACTGAATTGTTCTTC 59.994 40.000 0.00 0.00 46.86 2.87
882 1137 5.807011 GTGTTTTGCACTGAATTGTTCTTCT 59.193 36.000 0.00 0.00 44.41 2.85
883 1138 6.972328 GTGTTTTGCACTGAATTGTTCTTCTA 59.028 34.615 0.00 0.00 44.41 2.10
884 1139 6.972328 TGTTTTGCACTGAATTGTTCTTCTAC 59.028 34.615 0.00 0.00 0.00 2.59
885 1140 6.942532 TTTGCACTGAATTGTTCTTCTACT 57.057 33.333 0.00 0.00 0.00 2.57
886 1141 6.545504 TTGCACTGAATTGTTCTTCTACTC 57.454 37.500 0.00 0.00 0.00 2.59
887 1142 5.858381 TGCACTGAATTGTTCTTCTACTCT 58.142 37.500 0.00 0.00 0.00 3.24
888 1143 5.698089 TGCACTGAATTGTTCTTCTACTCTG 59.302 40.000 0.00 0.00 0.00 3.35
889 1144 5.928839 GCACTGAATTGTTCTTCTACTCTGA 59.071 40.000 0.00 0.00 0.00 3.27
890 1145 6.425114 GCACTGAATTGTTCTTCTACTCTGAA 59.575 38.462 0.00 0.00 0.00 3.02
891 1146 7.041780 GCACTGAATTGTTCTTCTACTCTGAAA 60.042 37.037 0.00 0.00 0.00 2.69
892 1147 8.830580 CACTGAATTGTTCTTCTACTCTGAAAA 58.169 33.333 0.00 0.00 0.00 2.29
893 1148 9.566432 ACTGAATTGTTCTTCTACTCTGAAAAT 57.434 29.630 0.00 0.00 0.00 1.82
975 1230 0.591170 ACCTGTTCGACAAATTGCCG 59.409 50.000 0.00 0.00 0.00 5.69
995 1267 3.844090 GCCGAGCTGGTCTCCTCC 61.844 72.222 5.23 0.00 41.21 4.30
1063 1335 3.760035 CGTGTCCCTCCACCTCCG 61.760 72.222 0.00 0.00 31.47 4.63
1092 1364 2.562738 GGTGTTCAGGCCTAATTGCTTT 59.437 45.455 3.98 0.00 0.00 3.51
1165 1438 1.936547 GGCTTCTCTTCGTGCCTTATG 59.063 52.381 0.00 0.00 41.92 1.90
1176 1449 1.526917 GCCTTATGCACCGGCTCAT 60.527 57.895 13.77 7.91 40.62 2.90
1201 1474 1.919956 GCTGCCAGTGTCATGTGCTC 61.920 60.000 0.00 0.00 0.00 4.26
1265 1538 1.360551 CGGAGCGTACCTGAGGATG 59.639 63.158 4.99 0.00 0.00 3.51
1271 1544 0.757188 CGTACCTGAGGATGGAGGCT 60.757 60.000 4.99 0.00 31.90 4.58
1342 1615 1.069227 GCTGCAGAAAAAGGTACGGTG 60.069 52.381 20.43 0.00 0.00 4.94
1357 1630 3.471620 GTGCTGGTCACCTCAGGA 58.528 61.111 0.00 0.00 39.79 3.86
1368 1641 0.405585 ACCTCAGGATTGGGTTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
1382 1655 1.681264 GTTGTGGGTTCCAAGTTCCAG 59.319 52.381 0.00 0.00 34.18 3.86
1384 1657 1.152830 TGGGTTCCAAGTTCCAGCC 59.847 57.895 0.00 0.00 0.00 4.85
1385 1658 1.152830 GGGTTCCAAGTTCCAGCCA 59.847 57.895 0.00 0.00 0.00 4.75
1386 1659 1.179174 GGGTTCCAAGTTCCAGCCAC 61.179 60.000 0.00 0.00 0.00 5.01
1387 1660 0.467290 GGTTCCAAGTTCCAGCCACA 60.467 55.000 0.00 0.00 0.00 4.17
1418 1698 5.418209 CAGCAAATCTGAAGGGAATTCTCTT 59.582 40.000 20.68 20.68 45.72 2.85
1443 1766 2.435938 AGTACAATGGCACGGCGG 60.436 61.111 13.24 0.66 0.00 6.13
1487 1810 0.179936 GCTCCAACAGGCAGCTCTAT 59.820 55.000 0.00 0.00 0.00 1.98
1508 1831 1.226688 CATGCTCGTCGACGACCAT 60.227 57.895 32.56 32.56 43.14 3.55
1523 1846 2.681976 CGACCATGGCAAGAAGATCCTT 60.682 50.000 13.04 0.00 0.00 3.36
1529 1852 5.832060 CCATGGCAAGAAGATCCTTTTCTAT 59.168 40.000 0.00 0.00 33.92 1.98
1556 1879 0.622665 CCCTGCAGGAGGAAATCTGT 59.377 55.000 34.91 0.00 46.33 3.41
1562 1885 1.134280 CAGGAGGAAATCTGTGGCGAT 60.134 52.381 0.00 0.00 0.00 4.58
1565 1888 0.179073 AGGAAATCTGTGGCGATCCG 60.179 55.000 0.00 0.00 34.14 4.18
1597 1924 2.704719 TGGTAATCCAGACCACCCC 58.295 57.895 0.00 0.00 42.15 4.95
1598 1925 0.120377 TGGTAATCCAGACCACCCCT 59.880 55.000 0.00 0.00 42.15 4.79
1606 1933 1.609794 AGACCACCCCTCTTCGTCC 60.610 63.158 0.00 0.00 0.00 4.79
1727 2056 2.266055 GTCGGGGAAGAGCTGGTG 59.734 66.667 0.00 0.00 0.00 4.17
1852 2181 2.225792 GGTTCCTGCCCAGATAGCT 58.774 57.895 0.00 0.00 0.00 3.32
1855 2184 2.485657 GGTTCCTGCCCAGATAGCTAAC 60.486 54.545 0.00 0.00 0.00 2.34
1917 2246 3.604582 AGCAGACTATTTGGTGAAGAGC 58.395 45.455 0.00 0.00 29.53 4.09
1945 2274 5.306160 AGTGTAGCCTGTAGGAAGTTGTTTA 59.694 40.000 1.17 0.00 37.39 2.01
1961 2290 6.729187 AGTTGTTTACTCTGTGAATTGCTTC 58.271 36.000 0.00 0.00 28.23 3.86
1963 2292 7.679638 AGTTGTTTACTCTGTGAATTGCTTCAC 60.680 37.037 10.98 10.98 46.10 3.18
1974 2303 5.868257 TGAATTGCTTCACGTATGATTCAC 58.132 37.500 0.00 0.00 36.46 3.18
1982 2316 5.514274 TCACGTATGATTCACATAGCTCA 57.486 39.130 0.00 0.00 41.41 4.26
1983 2317 6.089249 TCACGTATGATTCACATAGCTCAT 57.911 37.500 0.00 0.00 41.41 2.90
2022 2356 9.571816 TTCACATCATATGTTATTATGGCAGAA 57.428 29.630 1.90 0.00 42.70 3.02
2030 2368 6.698008 TGTTATTATGGCAGAAATCACTGG 57.302 37.500 0.00 0.00 38.22 4.00
2035 2373 3.389741 GCAGAAATCACTGGCAACG 57.610 52.632 0.00 0.00 38.22 4.10
2058 2397 6.092670 ACGATAAAATGTTCTCCACTGTCATG 59.907 38.462 0.00 0.00 0.00 3.07
2060 2399 5.443185 AAAATGTTCTCCACTGTCATGTG 57.557 39.130 0.00 0.00 37.66 3.21
2068 2407 7.041167 TGTTCTCCACTGTCATGTGAAATAAAG 60.041 37.037 0.00 0.00 40.12 1.85
2075 2414 8.562892 CACTGTCATGTGAAATAAAGAACTCTT 58.437 33.333 0.00 0.00 40.12 2.85
2109 2461 7.285566 ACTTGAGAACACATGCCTATATCAAT 58.714 34.615 0.00 0.00 0.00 2.57
2153 2506 8.288689 AGGTTAAACAACAAACTGTACATTCT 57.711 30.769 0.00 0.00 0.00 2.40
2177 2530 1.515081 TTTTTGAGGGAACTACGGCG 58.485 50.000 4.80 4.80 44.43 6.46
2178 2531 0.320946 TTTTGAGGGAACTACGGCGG 60.321 55.000 13.24 0.00 44.43 6.13
2179 2532 2.175035 TTTGAGGGAACTACGGCGGG 62.175 60.000 13.24 6.18 44.43 6.13
2180 2533 4.525949 GAGGGAACTACGGCGGGC 62.526 72.222 13.24 0.00 44.43 6.13
2182 2535 4.397832 GGGAACTACGGCGGGCAA 62.398 66.667 13.24 0.00 0.00 4.52
2183 2536 2.358984 GGAACTACGGCGGGCAAA 60.359 61.111 13.24 0.00 0.00 3.68
2184 2537 2.396157 GGAACTACGGCGGGCAAAG 61.396 63.158 13.24 2.84 0.00 2.77
2185 2538 3.035576 GAACTACGGCGGGCAAAGC 62.036 63.158 13.24 0.00 0.00 3.51
2196 2549 3.769201 GCAAAGCCAGCCTGAACT 58.231 55.556 0.00 0.00 0.00 3.01
2197 2550 1.583477 GCAAAGCCAGCCTGAACTC 59.417 57.895 0.00 0.00 0.00 3.01
2198 2551 1.174712 GCAAAGCCAGCCTGAACTCA 61.175 55.000 0.00 0.00 0.00 3.41
2199 2552 1.542492 CAAAGCCAGCCTGAACTCAT 58.458 50.000 0.00 0.00 0.00 2.90
2200 2553 1.891150 CAAAGCCAGCCTGAACTCATT 59.109 47.619 0.00 0.00 0.00 2.57
2201 2554 2.298163 CAAAGCCAGCCTGAACTCATTT 59.702 45.455 0.00 0.00 0.00 2.32
2202 2555 2.299326 AGCCAGCCTGAACTCATTTT 57.701 45.000 0.00 0.00 0.00 1.82
2203 2556 3.439857 AGCCAGCCTGAACTCATTTTA 57.560 42.857 0.00 0.00 0.00 1.52
2204 2557 3.973425 AGCCAGCCTGAACTCATTTTAT 58.027 40.909 0.00 0.00 0.00 1.40
2205 2558 4.347607 AGCCAGCCTGAACTCATTTTATT 58.652 39.130 0.00 0.00 0.00 1.40
2206 2559 5.509498 AGCCAGCCTGAACTCATTTTATTA 58.491 37.500 0.00 0.00 0.00 0.98
2207 2560 5.951747 AGCCAGCCTGAACTCATTTTATTAA 59.048 36.000 0.00 0.00 0.00 1.40
2208 2561 6.608808 AGCCAGCCTGAACTCATTTTATTAAT 59.391 34.615 0.00 0.00 0.00 1.40
2209 2562 7.124750 AGCCAGCCTGAACTCATTTTATTAATT 59.875 33.333 0.00 0.00 0.00 1.40
2210 2563 7.765819 GCCAGCCTGAACTCATTTTATTAATTT 59.234 33.333 0.00 0.00 0.00 1.82
2211 2564 9.657419 CCAGCCTGAACTCATTTTATTAATTTT 57.343 29.630 0.00 0.00 0.00 1.82
2213 2566 9.657419 AGCCTGAACTCATTTTATTAATTTTGG 57.343 29.630 0.00 0.00 0.00 3.28
2214 2567 9.435688 GCCTGAACTCATTTTATTAATTTTGGT 57.564 29.630 0.00 0.00 0.00 3.67
2243 2596 8.994429 ACAGAGAGTATTTACAAGAATGTCAG 57.006 34.615 0.00 0.00 41.05 3.51
2244 2597 8.807118 ACAGAGAGTATTTACAAGAATGTCAGA 58.193 33.333 0.00 0.00 41.05 3.27
2245 2598 9.299963 CAGAGAGTATTTACAAGAATGTCAGAG 57.700 37.037 0.00 0.00 41.05 3.35
2246 2599 7.978975 AGAGAGTATTTACAAGAATGTCAGAGC 59.021 37.037 0.00 0.00 41.05 4.09
2247 2600 6.754209 AGAGTATTTACAAGAATGTCAGAGCG 59.246 38.462 0.00 0.00 41.05 5.03
2248 2601 6.631016 AGTATTTACAAGAATGTCAGAGCGA 58.369 36.000 0.00 0.00 41.05 4.93
2249 2602 7.268586 AGTATTTACAAGAATGTCAGAGCGAT 58.731 34.615 0.00 0.00 41.05 4.58
2250 2603 8.414003 AGTATTTACAAGAATGTCAGAGCGATA 58.586 33.333 0.00 0.00 41.05 2.92
2251 2604 7.706281 ATTTACAAGAATGTCAGAGCGATAG 57.294 36.000 0.00 0.00 41.05 2.08
2252 2605 4.991153 ACAAGAATGTCAGAGCGATAGA 57.009 40.909 0.00 0.00 33.41 1.98
2253 2606 4.930963 ACAAGAATGTCAGAGCGATAGAG 58.069 43.478 0.00 0.00 33.41 2.43
2254 2607 4.202101 ACAAGAATGTCAGAGCGATAGAGG 60.202 45.833 0.00 0.00 33.41 3.69
2255 2608 3.826524 AGAATGTCAGAGCGATAGAGGA 58.173 45.455 0.00 0.00 39.76 3.71
2256 2609 4.211125 AGAATGTCAGAGCGATAGAGGAA 58.789 43.478 0.00 0.00 39.76 3.36
2257 2610 4.278170 AGAATGTCAGAGCGATAGAGGAAG 59.722 45.833 0.00 0.00 39.76 3.46
2258 2611 3.283259 TGTCAGAGCGATAGAGGAAGA 57.717 47.619 0.00 0.00 39.76 2.87
2259 2612 3.621558 TGTCAGAGCGATAGAGGAAGAA 58.378 45.455 0.00 0.00 39.76 2.52
2260 2613 3.629855 TGTCAGAGCGATAGAGGAAGAAG 59.370 47.826 0.00 0.00 39.76 2.85
2261 2614 3.880490 GTCAGAGCGATAGAGGAAGAAGA 59.120 47.826 0.00 0.00 39.76 2.87
2262 2615 4.336993 GTCAGAGCGATAGAGGAAGAAGAA 59.663 45.833 0.00 0.00 39.76 2.52
2263 2616 4.950475 TCAGAGCGATAGAGGAAGAAGAAA 59.050 41.667 0.00 0.00 39.76 2.52
2264 2617 5.419155 TCAGAGCGATAGAGGAAGAAGAAAA 59.581 40.000 0.00 0.00 39.76 2.29
2265 2618 6.071334 TCAGAGCGATAGAGGAAGAAGAAAAA 60.071 38.462 0.00 0.00 39.76 1.94
2301 2654 2.230664 TGGGACAGCATGATACCCC 58.769 57.895 18.55 15.30 42.85 4.95
2302 2655 0.623031 TGGGACAGCATGATACCCCA 60.623 55.000 16.02 16.02 42.85 4.96
2303 2656 0.109342 GGGACAGCATGATACCCCAG 59.891 60.000 13.25 0.00 39.69 4.45
2304 2657 0.839946 GGACAGCATGATACCCCAGT 59.160 55.000 0.00 0.00 39.69 4.00
2305 2658 1.202698 GGACAGCATGATACCCCAGTC 60.203 57.143 0.00 0.00 39.69 3.51
2306 2659 1.486310 GACAGCATGATACCCCAGTCA 59.514 52.381 0.00 0.00 39.69 3.41
2307 2660 1.915489 ACAGCATGATACCCCAGTCAA 59.085 47.619 0.00 0.00 39.69 3.18
2308 2661 2.511218 ACAGCATGATACCCCAGTCAAT 59.489 45.455 0.00 0.00 39.69 2.57
2309 2662 3.144506 CAGCATGATACCCCAGTCAATC 58.855 50.000 0.00 0.00 39.69 2.67
2310 2663 2.779430 AGCATGATACCCCAGTCAATCA 59.221 45.455 0.00 0.00 33.20 2.57
2311 2664 3.144506 GCATGATACCCCAGTCAATCAG 58.855 50.000 0.00 0.00 32.25 2.90
2312 2665 3.748083 CATGATACCCCAGTCAATCAGG 58.252 50.000 0.00 0.00 32.25 3.86
2313 2666 3.129262 TGATACCCCAGTCAATCAGGA 57.871 47.619 0.00 0.00 0.00 3.86
2314 2667 3.668821 TGATACCCCAGTCAATCAGGAT 58.331 45.455 0.00 0.00 0.00 3.24
2315 2668 4.047166 TGATACCCCAGTCAATCAGGATT 58.953 43.478 0.00 0.00 0.00 3.01
2316 2669 4.478317 TGATACCCCAGTCAATCAGGATTT 59.522 41.667 0.00 0.00 0.00 2.17
2317 2670 3.091633 ACCCCAGTCAATCAGGATTTG 57.908 47.619 0.00 0.00 0.00 2.32
2318 2671 2.379907 ACCCCAGTCAATCAGGATTTGT 59.620 45.455 0.00 0.00 0.00 2.83
2319 2672 3.181418 ACCCCAGTCAATCAGGATTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
2320 2673 3.834231 CCCCAGTCAATCAGGATTTGTTT 59.166 43.478 0.00 0.00 0.00 2.83
2321 2674 4.082026 CCCCAGTCAATCAGGATTTGTTTC 60.082 45.833 0.00 0.00 0.00 2.78
2322 2675 4.768968 CCCAGTCAATCAGGATTTGTTTCT 59.231 41.667 0.00 0.00 0.00 2.52
2323 2676 5.336213 CCCAGTCAATCAGGATTTGTTTCTG 60.336 44.000 0.00 0.00 0.00 3.02
2324 2677 5.336213 CCAGTCAATCAGGATTTGTTTCTGG 60.336 44.000 0.00 0.00 33.10 3.86
2325 2678 5.242393 CAGTCAATCAGGATTTGTTTCTGGT 59.758 40.000 0.00 0.00 0.00 4.00
2326 2679 5.474876 AGTCAATCAGGATTTGTTTCTGGTC 59.525 40.000 0.00 0.00 0.00 4.02
2327 2680 4.766891 TCAATCAGGATTTGTTTCTGGTCC 59.233 41.667 0.00 0.00 0.00 4.46
2328 2681 4.664688 ATCAGGATTTGTTTCTGGTCCT 57.335 40.909 0.00 0.00 39.82 3.85
2329 2682 4.021102 TCAGGATTTGTTTCTGGTCCTC 57.979 45.455 0.00 0.00 37.20 3.71
2330 2683 2.744202 CAGGATTTGTTTCTGGTCCTCG 59.256 50.000 0.00 0.00 37.20 4.63
2331 2684 2.372172 AGGATTTGTTTCTGGTCCTCGT 59.628 45.455 0.00 0.00 34.26 4.18
2332 2685 3.146847 GGATTTGTTTCTGGTCCTCGTT 58.853 45.455 0.00 0.00 0.00 3.85
2333 2686 3.568430 GGATTTGTTTCTGGTCCTCGTTT 59.432 43.478 0.00 0.00 0.00 3.60
2334 2687 4.537015 GATTTGTTTCTGGTCCTCGTTTG 58.463 43.478 0.00 0.00 0.00 2.93
2335 2688 1.305201 TGTTTCTGGTCCTCGTTTGC 58.695 50.000 0.00 0.00 0.00 3.68
2336 2689 1.305201 GTTTCTGGTCCTCGTTTGCA 58.695 50.000 0.00 0.00 0.00 4.08
2337 2690 1.002792 GTTTCTGGTCCTCGTTTGCAC 60.003 52.381 0.00 0.00 0.00 4.57
2338 2691 0.179234 TTCTGGTCCTCGTTTGCACA 59.821 50.000 0.00 0.00 0.00 4.57
2339 2692 0.396435 TCTGGTCCTCGTTTGCACAT 59.604 50.000 0.00 0.00 0.00 3.21
2340 2693 0.798776 CTGGTCCTCGTTTGCACATC 59.201 55.000 0.00 0.00 0.00 3.06
2341 2694 0.396435 TGGTCCTCGTTTGCACATCT 59.604 50.000 0.00 0.00 0.00 2.90
2342 2695 1.621317 TGGTCCTCGTTTGCACATCTA 59.379 47.619 0.00 0.00 0.00 1.98
2343 2696 2.000447 GGTCCTCGTTTGCACATCTAC 59.000 52.381 0.00 0.00 0.00 2.59
2344 2697 2.353803 GGTCCTCGTTTGCACATCTACT 60.354 50.000 0.00 0.00 0.00 2.57
2345 2698 2.668457 GTCCTCGTTTGCACATCTACTG 59.332 50.000 0.00 0.00 0.00 2.74
2346 2699 2.002586 CCTCGTTTGCACATCTACTGG 58.997 52.381 0.00 0.00 0.00 4.00
2347 2700 2.353704 CCTCGTTTGCACATCTACTGGA 60.354 50.000 0.00 0.00 0.00 3.86
2348 2701 2.668457 CTCGTTTGCACATCTACTGGAC 59.332 50.000 0.00 0.00 0.00 4.02
2349 2702 1.732259 CGTTTGCACATCTACTGGACC 59.268 52.381 0.00 0.00 0.00 4.46
2350 2703 2.778299 GTTTGCACATCTACTGGACCA 58.222 47.619 0.00 0.00 0.00 4.02
2351 2704 3.146066 GTTTGCACATCTACTGGACCAA 58.854 45.455 0.00 0.00 0.00 3.67
2352 2705 2.768253 TGCACATCTACTGGACCAAG 57.232 50.000 0.00 0.00 0.00 3.61
2353 2706 1.278985 TGCACATCTACTGGACCAAGG 59.721 52.381 0.00 0.00 0.00 3.61
2360 2713 0.178903 TACTGGACCAAGGCAGAGGT 60.179 55.000 0.00 0.00 41.83 3.85
2365 2718 1.478654 GGACCAAGGCAGAGGTTCAAA 60.479 52.381 0.00 0.00 38.50 2.69
2366 2719 2.306847 GACCAAGGCAGAGGTTCAAAA 58.693 47.619 0.00 0.00 38.50 2.44
2379 2732 3.070015 AGGTTCAAAATTTCAGTGGCCTG 59.930 43.478 3.32 0.00 40.25 4.85
2390 2743 0.403271 AGTGGCCTGCATTCTTCAGT 59.597 50.000 3.32 0.00 0.00 3.41
2403 2756 6.026513 GCATTCTTCAGTTTAGTTCATCTGC 58.973 40.000 0.00 0.00 0.00 4.26
2462 2827 6.126863 TCTGTTCCCATCTTGTAAATGAGT 57.873 37.500 0.00 0.00 0.00 3.41
2489 4015 0.035152 TCCTGATGCACGAGCCAATT 60.035 50.000 1.39 0.00 41.13 2.32
2490 4016 1.209261 TCCTGATGCACGAGCCAATTA 59.791 47.619 1.39 0.00 41.13 1.40
2496 4022 3.552604 TGCACGAGCCAATTAAAGTTC 57.447 42.857 1.39 0.00 41.13 3.01
2505 4031 4.022329 AGCCAATTAAAGTTCGTTCAAGGG 60.022 41.667 0.00 0.00 0.00 3.95
2506 4032 4.805219 CCAATTAAAGTTCGTTCAAGGGG 58.195 43.478 0.00 0.00 0.00 4.79
2511 4042 1.053424 AGTTCGTTCAAGGGGCAGTA 58.947 50.000 0.00 0.00 0.00 2.74
2626 4159 5.300969 AGTGTCAACATCACATATGCAAC 57.699 39.130 1.58 0.00 38.16 4.17
2690 4223 6.514048 GCTCTTGCAACTCAGAAAAATAGTGT 60.514 38.462 0.00 0.00 39.41 3.55
2692 4225 7.771183 TCTTGCAACTCAGAAAAATAGTGTTT 58.229 30.769 0.00 0.00 0.00 2.83
2702 4235 9.611284 TCAGAAAAATAGTGTTTTTCATCATCG 57.389 29.630 28.62 15.31 45.73 3.84
2707 4240 4.766404 AGTGTTTTTCATCATCGGGTTC 57.234 40.909 0.00 0.00 0.00 3.62
2739 4280 0.833287 CCACCTAGCAGGCTGTATGT 59.167 55.000 17.16 7.62 39.63 2.29
2747 4288 1.959042 CAGGCTGTATGTGGTGATCC 58.041 55.000 6.28 0.00 0.00 3.36
2751 4292 1.134818 GCTGTATGTGGTGATCCGTCA 60.135 52.381 0.00 0.00 36.30 4.35
2761 4302 3.515502 TGGTGATCCGTCAATCTTTCTCT 59.484 43.478 0.00 0.00 35.80 3.10
2777 4318 6.292150 TCTTTCTCTTCTCTTCCTCCAAAAC 58.708 40.000 0.00 0.00 0.00 2.43
2778 4319 5.630415 TTCTCTTCTCTTCCTCCAAAACA 57.370 39.130 0.00 0.00 0.00 2.83
2780 4321 6.192970 TCTCTTCTCTTCCTCCAAAACAAT 57.807 37.500 0.00 0.00 0.00 2.71
2781 4322 6.605119 TCTCTTCTCTTCCTCCAAAACAATT 58.395 36.000 0.00 0.00 0.00 2.32
2783 4324 6.605119 TCTTCTCTTCCTCCAAAACAATTCT 58.395 36.000 0.00 0.00 0.00 2.40
2784 4325 6.712547 TCTTCTCTTCCTCCAAAACAATTCTC 59.287 38.462 0.00 0.00 0.00 2.87
2786 4327 4.072131 TCTTCCTCCAAAACAATTCTCCG 58.928 43.478 0.00 0.00 0.00 4.63
2787 4328 3.502123 TCCTCCAAAACAATTCTCCGT 57.498 42.857 0.00 0.00 0.00 4.69
2788 4329 4.627284 TCCTCCAAAACAATTCTCCGTA 57.373 40.909 0.00 0.00 0.00 4.02
2790 4331 5.001232 TCCTCCAAAACAATTCTCCGTAAG 58.999 41.667 0.00 0.00 0.00 2.34
2824 4365 6.263168 ACCACAGTTAATTTTCTGAACCTCAG 59.737 38.462 13.83 0.00 45.59 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 2.895372 CCGCTAATCACGCCACCC 60.895 66.667 0.00 0.00 0.00 4.61
151 153 4.863925 GAGCGCACGAGAGAGGCC 62.864 72.222 11.47 0.00 0.00 5.19
152 154 3.821055 AGAGCGCACGAGAGAGGC 61.821 66.667 11.47 0.00 0.00 4.70
153 155 1.369839 TACAGAGCGCACGAGAGAGG 61.370 60.000 11.47 0.00 0.00 3.69
155 157 1.369839 CCTACAGAGCGCACGAGAGA 61.370 60.000 11.47 0.00 0.00 3.10
156 158 1.063327 CCTACAGAGCGCACGAGAG 59.937 63.158 11.47 2.97 0.00 3.20
158 160 2.549611 AAGCCTACAGAGCGCACGAG 62.550 60.000 11.47 4.28 34.64 4.18
161 163 0.460987 ATCAAGCCTACAGAGCGCAC 60.461 55.000 11.47 2.25 34.64 5.34
162 164 0.460811 CATCAAGCCTACAGAGCGCA 60.461 55.000 11.47 0.00 34.64 6.09
163 165 1.156645 CCATCAAGCCTACAGAGCGC 61.157 60.000 0.00 0.00 34.64 5.92
176 335 2.692709 TGGAAGAAAAGGCCCATCAA 57.307 45.000 0.00 0.00 0.00 2.57
210 378 1.190643 GCTAAGAGCCTGAGACCACT 58.809 55.000 0.00 0.00 34.48 4.00
230 398 0.596082 CGTTTACAAGGCCCAACTGG 59.404 55.000 0.00 0.00 37.09 4.00
231 399 1.314730 ACGTTTACAAGGCCCAACTG 58.685 50.000 0.00 0.00 0.00 3.16
232 400 1.679153 CAACGTTTACAAGGCCCAACT 59.321 47.619 0.00 0.00 0.00 3.16
233 401 1.866471 GCAACGTTTACAAGGCCCAAC 60.866 52.381 0.00 0.00 0.00 3.77
253 421 1.112459 GCGAAAAACAGAGCAACGTG 58.888 50.000 0.00 0.00 0.00 4.49
254 422 0.315869 CGCGAAAAACAGAGCAACGT 60.316 50.000 0.00 0.00 0.00 3.99
255 423 0.315869 ACGCGAAAAACAGAGCAACG 60.316 50.000 15.93 0.00 0.00 4.10
262 431 1.868498 TCCAAGGTACGCGAAAAACAG 59.132 47.619 15.93 0.00 0.00 3.16
269 438 0.896940 AACTCCTCCAAGGTACGCGA 60.897 55.000 15.93 0.00 36.53 5.87
270 439 0.458025 GAACTCCTCCAAGGTACGCG 60.458 60.000 3.53 3.53 36.53 6.01
271 440 0.896226 AGAACTCCTCCAAGGTACGC 59.104 55.000 0.00 0.00 36.53 4.42
272 441 2.424246 GAGAGAACTCCTCCAAGGTACG 59.576 54.545 0.00 0.00 42.97 3.67
273 442 3.697542 GAGAGAGAACTCCTCCAAGGTAC 59.302 52.174 0.00 0.00 42.97 3.34
274 443 3.333980 TGAGAGAGAACTCCTCCAAGGTA 59.666 47.826 13.48 0.00 42.97 3.08
277 446 4.526262 TCTTTGAGAGAGAACTCCTCCAAG 59.474 45.833 17.39 17.39 42.97 3.61
278 447 4.483950 TCTTTGAGAGAGAACTCCTCCAA 58.516 43.478 13.48 9.95 42.97 3.53
306 501 1.757340 GACTCCTCCAGGGTACGGG 60.757 68.421 0.00 0.00 36.25 5.28
307 502 1.757340 GGACTCCTCCAGGGTACGG 60.757 68.421 0.00 0.00 36.42 4.02
311 506 2.182858 AATCCGGACTCCTCCAGGGT 62.183 60.000 6.12 0.00 36.12 4.34
312 507 0.983378 AAATCCGGACTCCTCCAGGG 60.983 60.000 6.12 0.00 36.12 4.45
314 509 1.407437 CCAAAATCCGGACTCCTCCAG 60.407 57.143 6.12 0.00 36.12 3.86
318 513 2.171448 CTCATCCAAAATCCGGACTCCT 59.829 50.000 6.12 0.00 34.69 3.69
319 514 2.565841 CTCATCCAAAATCCGGACTCC 58.434 52.381 6.12 0.00 34.69 3.85
320 515 2.565841 CCTCATCCAAAATCCGGACTC 58.434 52.381 6.12 0.00 34.69 3.36
322 517 1.025041 GCCTCATCCAAAATCCGGAC 58.975 55.000 6.12 0.00 34.69 4.79
324 519 2.024918 CGCCTCATCCAAAATCCGG 58.975 57.895 0.00 0.00 0.00 5.14
325 520 1.356624 GCGCCTCATCCAAAATCCG 59.643 57.895 0.00 0.00 0.00 4.18
326 521 1.356624 CGCGCCTCATCCAAAATCC 59.643 57.895 0.00 0.00 0.00 3.01
327 522 1.298638 GCGCGCCTCATCCAAAATC 60.299 57.895 23.24 0.00 0.00 2.17
328 523 1.996786 CTGCGCGCCTCATCCAAAAT 61.997 55.000 30.77 0.00 0.00 1.82
330 525 3.126879 CTGCGCGCCTCATCCAAA 61.127 61.111 30.77 5.02 0.00 3.28
549 803 8.138712 GTCTAAGGATTCATATCGAACTCACTT 58.861 37.037 0.00 0.00 36.12 3.16
560 814 7.038658 GCCTAGTTGGAGTCTAAGGATTCATAT 60.039 40.741 0.00 0.00 38.35 1.78
562 816 5.071115 GCCTAGTTGGAGTCTAAGGATTCAT 59.929 44.000 0.00 0.00 38.35 2.57
569 823 4.404073 AGACATGCCTAGTTGGAGTCTAAG 59.596 45.833 10.44 0.00 40.03 2.18
572 826 2.763448 GAGACATGCCTAGTTGGAGTCT 59.237 50.000 11.47 11.47 42.49 3.24
574 828 2.499289 CAGAGACATGCCTAGTTGGAGT 59.501 50.000 0.00 0.00 38.35 3.85
580 834 3.093057 TCAGACAGAGACATGCCTAGT 57.907 47.619 0.00 0.00 0.00 2.57
589 843 5.066634 TCTCGAATAACCATCAGACAGAGAC 59.933 44.000 0.00 0.00 0.00 3.36
617 871 7.645340 CGTTTGTTTCTCATCAGACAGATTTTT 59.355 33.333 0.00 0.00 33.72 1.94
618 872 7.134815 CGTTTGTTTCTCATCAGACAGATTTT 58.865 34.615 0.00 0.00 33.72 1.82
619 873 6.662616 CGTTTGTTTCTCATCAGACAGATTT 58.337 36.000 0.00 0.00 33.72 2.17
620 874 5.334414 GCGTTTGTTTCTCATCAGACAGATT 60.334 40.000 0.00 0.00 33.72 2.40
621 875 4.153117 GCGTTTGTTTCTCATCAGACAGAT 59.847 41.667 0.00 0.00 37.48 2.90
633 887 4.038162 ACTCTAGAGTGAGCGTTTGTTTCT 59.962 41.667 24.62 0.00 40.75 2.52
635 889 4.038162 AGACTCTAGAGTGAGCGTTTGTTT 59.962 41.667 29.84 0.00 42.66 2.83
637 891 3.150767 AGACTCTAGAGTGAGCGTTTGT 58.849 45.455 29.84 1.57 42.66 2.83
638 892 3.840890 AGACTCTAGAGTGAGCGTTTG 57.159 47.619 29.84 0.00 42.66 2.93
639 893 4.834534 TCTAGACTCTAGAGTGAGCGTTT 58.165 43.478 29.84 2.21 42.66 3.60
640 894 4.475051 TCTAGACTCTAGAGTGAGCGTT 57.525 45.455 29.84 3.03 42.66 4.84
641 895 4.475051 TTCTAGACTCTAGAGTGAGCGT 57.525 45.455 29.84 11.05 42.66 5.07
642 896 4.149922 CGATTCTAGACTCTAGAGTGAGCG 59.850 50.000 29.84 20.53 42.66 5.03
643 897 5.050363 CACGATTCTAGACTCTAGAGTGAGC 60.050 48.000 29.84 15.36 42.66 4.26
644 898 6.200286 GTCACGATTCTAGACTCTAGAGTGAG 59.800 46.154 29.84 23.54 42.66 3.51
645 899 6.044046 GTCACGATTCTAGACTCTAGAGTGA 58.956 44.000 29.84 21.71 42.66 3.41
646 900 5.235616 GGTCACGATTCTAGACTCTAGAGTG 59.764 48.000 29.84 15.52 42.66 3.51
652 906 4.035792 CGATTGGTCACGATTCTAGACTCT 59.964 45.833 8.31 0.00 32.98 3.24
672 926 1.279271 CTCAGAGTTGGGGGTTTCGAT 59.721 52.381 0.00 0.00 0.00 3.59
673 927 0.685097 CTCAGAGTTGGGGGTTTCGA 59.315 55.000 0.00 0.00 0.00 3.71
674 928 0.396811 ACTCAGAGTTGGGGGTTTCG 59.603 55.000 0.00 0.00 0.00 3.46
683 937 3.990469 ACTATGCGTTGAACTCAGAGTTG 59.010 43.478 21.00 7.24 38.80 3.16
698 952 1.633561 CACACTGACTGGACTATGCG 58.366 55.000 0.00 0.00 0.00 4.73
721 975 6.272318 TGACCAATGAACAGACACAAAATTC 58.728 36.000 0.00 0.00 0.00 2.17
722 976 6.219417 TGACCAATGAACAGACACAAAATT 57.781 33.333 0.00 0.00 0.00 1.82
730 984 3.005684 TGGCATTTGACCAATGAACAGAC 59.994 43.478 3.51 0.00 44.78 3.51
756 1010 2.022764 AAAACAAGCCCAGTGCAAAC 57.977 45.000 0.00 0.00 44.83 2.93
759 1013 1.484038 AGAAAAACAAGCCCAGTGCA 58.516 45.000 0.00 0.00 44.83 4.57
760 1014 2.623416 AGTAGAAAAACAAGCCCAGTGC 59.377 45.455 0.00 0.00 41.71 4.40
761 1015 5.063880 AGTAGTAGAAAAACAAGCCCAGTG 58.936 41.667 0.00 0.00 0.00 3.66
762 1016 5.306114 AGTAGTAGAAAAACAAGCCCAGT 57.694 39.130 0.00 0.00 0.00 4.00
763 1017 4.695928 GGAGTAGTAGAAAAACAAGCCCAG 59.304 45.833 0.00 0.00 0.00 4.45
764 1018 4.349930 AGGAGTAGTAGAAAAACAAGCCCA 59.650 41.667 0.00 0.00 0.00 5.36
765 1019 4.907809 AGGAGTAGTAGAAAAACAAGCCC 58.092 43.478 0.00 0.00 0.00 5.19
789 1043 4.437659 CGACAGAGTTAGCTAGTTCCTGTC 60.438 50.000 23.30 23.30 43.08 3.51
790 1044 3.440872 CGACAGAGTTAGCTAGTTCCTGT 59.559 47.826 15.35 15.35 36.27 4.00
791 1045 3.181495 CCGACAGAGTTAGCTAGTTCCTG 60.181 52.174 10.82 10.82 0.00 3.86
795 1050 3.155501 ACACCGACAGAGTTAGCTAGTT 58.844 45.455 0.00 0.00 0.00 2.24
816 1071 5.012239 CCCTGTGAATTTTCCTCTGATGAA 58.988 41.667 0.00 0.00 0.00 2.57
840 1095 4.015406 CTAGTGGTGGCACCGGCA 62.015 66.667 30.14 16.59 42.58 5.69
841 1096 4.778143 CCTAGTGGTGGCACCGGC 62.778 72.222 30.14 24.31 42.58 6.13
842 1097 3.319198 ACCTAGTGGTGGCACCGG 61.319 66.667 30.14 25.82 46.51 5.28
859 1114 5.964758 AGAAGAACAATTCAGTGCAAAACA 58.035 33.333 0.00 0.00 0.00 2.83
860 1115 7.196331 AGTAGAAGAACAATTCAGTGCAAAAC 58.804 34.615 0.00 0.00 0.00 2.43
861 1116 7.283127 AGAGTAGAAGAACAATTCAGTGCAAAA 59.717 33.333 0.00 0.00 0.00 2.44
862 1117 6.767902 AGAGTAGAAGAACAATTCAGTGCAAA 59.232 34.615 0.00 0.00 0.00 3.68
863 1118 6.203530 CAGAGTAGAAGAACAATTCAGTGCAA 59.796 38.462 0.00 0.00 0.00 4.08
864 1119 5.698089 CAGAGTAGAAGAACAATTCAGTGCA 59.302 40.000 0.00 0.00 0.00 4.57
865 1120 5.928839 TCAGAGTAGAAGAACAATTCAGTGC 59.071 40.000 0.00 0.00 0.00 4.40
866 1121 7.953158 TTCAGAGTAGAAGAACAATTCAGTG 57.047 36.000 0.00 0.00 0.00 3.66
867 1122 8.964476 TTTTCAGAGTAGAAGAACAATTCAGT 57.036 30.769 0.00 0.00 0.00 3.41
869 1124 9.003658 GGATTTTCAGAGTAGAAGAACAATTCA 57.996 33.333 0.00 0.00 0.00 2.57
870 1125 9.003658 TGGATTTTCAGAGTAGAAGAACAATTC 57.996 33.333 0.00 0.00 0.00 2.17
871 1126 8.787852 GTGGATTTTCAGAGTAGAAGAACAATT 58.212 33.333 0.00 0.00 0.00 2.32
872 1127 7.939039 TGTGGATTTTCAGAGTAGAAGAACAAT 59.061 33.333 0.00 0.00 0.00 2.71
873 1128 7.279615 TGTGGATTTTCAGAGTAGAAGAACAA 58.720 34.615 0.00 0.00 0.00 2.83
874 1129 6.826668 TGTGGATTTTCAGAGTAGAAGAACA 58.173 36.000 0.00 0.00 0.00 3.18
875 1130 6.370166 CCTGTGGATTTTCAGAGTAGAAGAAC 59.630 42.308 0.00 0.00 34.02 3.01
876 1131 6.467677 CCTGTGGATTTTCAGAGTAGAAGAA 58.532 40.000 0.00 0.00 34.02 2.52
877 1132 5.046304 CCCTGTGGATTTTCAGAGTAGAAGA 60.046 44.000 0.00 0.00 34.02 2.87
878 1133 5.181748 CCCTGTGGATTTTCAGAGTAGAAG 58.818 45.833 0.00 0.00 34.02 2.85
879 1134 4.597507 ACCCTGTGGATTTTCAGAGTAGAA 59.402 41.667 0.00 0.00 34.02 2.10
880 1135 4.020218 CACCCTGTGGATTTTCAGAGTAGA 60.020 45.833 0.00 0.00 34.02 2.59
881 1136 4.256920 CACCCTGTGGATTTTCAGAGTAG 58.743 47.826 0.00 0.00 34.02 2.57
882 1137 3.650942 ACACCCTGTGGATTTTCAGAGTA 59.349 43.478 0.00 0.00 37.94 2.59
883 1138 2.443255 ACACCCTGTGGATTTTCAGAGT 59.557 45.455 0.00 0.00 37.94 3.24
884 1139 2.816087 CACACCCTGTGGATTTTCAGAG 59.184 50.000 0.00 0.00 44.27 3.35
885 1140 2.862541 CACACCCTGTGGATTTTCAGA 58.137 47.619 0.00 0.00 44.27 3.27
886 1141 3.828451 ATTCACACCCTGTGGATTTTCAG 59.172 43.478 2.62 0.00 43.82 3.02
887 1142 3.826157 GATTCACACCCTGTGGATTTTCA 59.174 43.478 2.62 0.00 46.12 2.69
888 1143 3.193479 GGATTCACACCCTGTGGATTTTC 59.807 47.826 2.62 0.00 46.12 2.29
889 1144 3.165071 GGATTCACACCCTGTGGATTTT 58.835 45.455 2.62 0.00 46.12 1.82
890 1145 2.379907 AGGATTCACACCCTGTGGATTT 59.620 45.455 2.62 0.00 46.12 2.17
891 1146 1.995542 AGGATTCACACCCTGTGGATT 59.004 47.619 2.62 0.00 46.12 3.01
975 1230 4.459089 GGAGACCAGCTCGGCCAC 62.459 72.222 2.24 0.00 44.91 5.01
995 1267 0.240145 CAATGCCATCGCCATAGCAG 59.760 55.000 0.00 0.00 38.89 4.24
1040 1312 1.600107 GTGGAGGGACACGGCAATA 59.400 57.895 0.00 0.00 0.00 1.90
1072 1344 3.255642 TCAAAGCAATTAGGCCTGAACAC 59.744 43.478 17.99 1.66 0.00 3.32
1073 1345 3.495331 TCAAAGCAATTAGGCCTGAACA 58.505 40.909 17.99 0.00 0.00 3.18
1074 1346 3.507622 ACTCAAAGCAATTAGGCCTGAAC 59.492 43.478 17.99 0.99 0.00 3.18
1142 1414 2.261671 GCACGAAGAGAAGCCGGA 59.738 61.111 5.05 0.00 0.00 5.14
1201 1474 2.673610 CGCAGAAAGACAGAGAGGAAGG 60.674 54.545 0.00 0.00 0.00 3.46
1258 1531 2.134287 GCCGTAGCCTCCATCCTCA 61.134 63.158 0.00 0.00 0.00 3.86
1289 1562 1.004918 CTTGGCGTTCTCCTTCCGT 60.005 57.895 0.00 0.00 0.00 4.69
1342 1615 0.393537 CCAATCCTGAGGTGACCAGC 60.394 60.000 3.63 0.00 0.00 4.85
1357 1630 1.062505 ACTTGGAACCCACAACCCAAT 60.063 47.619 0.00 0.00 37.94 3.16
1368 1641 0.467290 TGTGGCTGGAACTTGGAACC 60.467 55.000 0.00 0.00 0.00 3.62
1382 1655 1.747325 ATTTGCTGGTGGTGTGTGGC 61.747 55.000 0.00 0.00 0.00 5.01
1384 1657 1.001048 CAGATTTGCTGGTGGTGTGTG 60.001 52.381 0.00 0.00 41.07 3.82
1385 1658 1.133823 TCAGATTTGCTGGTGGTGTGT 60.134 47.619 0.00 0.00 44.98 3.72
1386 1659 1.608055 TCAGATTTGCTGGTGGTGTG 58.392 50.000 0.00 0.00 44.98 3.82
1387 1660 2.233271 CTTCAGATTTGCTGGTGGTGT 58.767 47.619 0.00 0.00 44.98 4.16
1418 1698 0.539207 TGCCATTGTACTGCAGCCAA 60.539 50.000 15.27 17.21 0.00 4.52
1460 1783 0.957888 GCCTGTTGGAGCAGAAGACC 60.958 60.000 0.00 0.00 38.70 3.85
1487 1810 3.743636 TCGTCGACGAGCATGGCA 61.744 61.111 34.97 12.17 44.22 4.92
1508 1831 4.641989 GCATAGAAAAGGATCTTCTTGCCA 59.358 41.667 13.39 0.00 34.46 4.92
1523 1846 0.680921 GCAGGGTGCTGGCATAGAAA 60.681 55.000 0.00 0.00 40.96 2.52
1567 1890 0.657840 GATTACCACGGTGCTGCATC 59.342 55.000 5.27 3.55 0.00 3.91
1597 1924 0.109226 GTTGGACCGAGGACGAAGAG 60.109 60.000 0.00 0.00 42.66 2.85
1598 1925 0.538977 AGTTGGACCGAGGACGAAGA 60.539 55.000 0.00 0.00 42.66 2.87
1606 1933 1.970917 GCAATGCGAGTTGGACCGAG 61.971 60.000 0.00 0.00 0.00 4.63
1658 1985 2.246719 ACAGCTCAAGTTCAGGTGAC 57.753 50.000 13.21 0.00 41.10 3.67
1718 2047 2.345244 CACGCCTTCACCAGCTCT 59.655 61.111 0.00 0.00 0.00 4.09
1727 2056 2.437359 AGCTCCATGCACGCCTTC 60.437 61.111 0.00 0.00 45.94 3.46
1852 2181 4.348168 GCCTCCCAAGGATCTCATAAGTTA 59.652 45.833 0.00 0.00 46.67 2.24
1855 2184 2.978278 AGCCTCCCAAGGATCTCATAAG 59.022 50.000 0.00 0.00 46.67 1.73
1901 2230 3.584848 ACTCCTGCTCTTCACCAAATAGT 59.415 43.478 0.00 0.00 0.00 2.12
1961 2290 7.087007 ACTATGAGCTATGTGAATCATACGTG 58.913 38.462 0.00 0.00 37.91 4.49
1963 2292 8.454894 AGTACTATGAGCTATGTGAATCATACG 58.545 37.037 0.00 0.00 37.91 3.06
2002 2336 9.797642 AGTGATTTCTGCCATAATAACATATGA 57.202 29.630 10.38 0.00 35.69 2.15
2006 2340 6.239120 GCCAGTGATTTCTGCCATAATAACAT 60.239 38.462 0.00 0.00 34.47 2.71
2007 2341 5.067674 GCCAGTGATTTCTGCCATAATAACA 59.932 40.000 0.00 0.00 34.47 2.41
2015 2349 0.961019 GTTGCCAGTGATTTCTGCCA 59.039 50.000 0.00 0.00 34.47 4.92
2017 2351 0.874390 TCGTTGCCAGTGATTTCTGC 59.126 50.000 0.00 0.00 34.47 4.26
2022 2356 5.643379 ACATTTTATCGTTGCCAGTGATT 57.357 34.783 0.00 0.00 0.00 2.57
2030 2368 5.088739 CAGTGGAGAACATTTTATCGTTGC 58.911 41.667 0.00 0.00 0.00 4.17
2035 2373 7.119699 TCACATGACAGTGGAGAACATTTTATC 59.880 37.037 0.00 0.00 39.93 1.75
2080 2419 6.655078 ATAGGCATGTGTTCTCAAGTTTTT 57.345 33.333 0.00 0.00 0.00 1.94
2085 2424 7.741027 ATTGATATAGGCATGTGTTCTCAAG 57.259 36.000 0.00 0.00 0.00 3.02
2093 2432 9.828039 AGTGTGATATATTGATATAGGCATGTG 57.172 33.333 0.00 0.00 0.00 3.21
2159 2512 0.320946 CCGCCGTAGTTCCCTCAAAA 60.321 55.000 0.00 0.00 0.00 2.44
2160 2513 1.294138 CCGCCGTAGTTCCCTCAAA 59.706 57.895 0.00 0.00 0.00 2.69
2161 2514 2.652095 CCCGCCGTAGTTCCCTCAA 61.652 63.158 0.00 0.00 0.00 3.02
2162 2515 3.072468 CCCGCCGTAGTTCCCTCA 61.072 66.667 0.00 0.00 0.00 3.86
2163 2516 4.525949 GCCCGCCGTAGTTCCCTC 62.526 72.222 0.00 0.00 0.00 4.30
2165 2518 3.905437 TTTGCCCGCCGTAGTTCCC 62.905 63.158 0.00 0.00 0.00 3.97
2166 2519 2.358984 TTTGCCCGCCGTAGTTCC 60.359 61.111 0.00 0.00 0.00 3.62
2167 2520 3.035576 GCTTTGCCCGCCGTAGTTC 62.036 63.158 0.00 0.00 0.00 3.01
2168 2521 3.053896 GCTTTGCCCGCCGTAGTT 61.054 61.111 0.00 0.00 0.00 2.24
2179 2532 1.174712 TGAGTTCAGGCTGGCTTTGC 61.175 55.000 15.73 2.96 0.00 3.68
2180 2533 1.542492 ATGAGTTCAGGCTGGCTTTG 58.458 50.000 15.73 0.00 0.00 2.77
2181 2534 2.299326 AATGAGTTCAGGCTGGCTTT 57.701 45.000 15.73 3.28 0.00 3.51
2182 2535 2.299326 AAATGAGTTCAGGCTGGCTT 57.701 45.000 15.73 0.00 0.00 4.35
2183 2536 2.299326 AAAATGAGTTCAGGCTGGCT 57.701 45.000 15.73 13.14 0.00 4.75
2184 2537 4.725790 AATAAAATGAGTTCAGGCTGGC 57.274 40.909 15.73 8.24 0.00 4.85
2185 2538 9.657419 AAAATTAATAAAATGAGTTCAGGCTGG 57.343 29.630 15.73 0.00 0.00 4.85
2187 2540 9.657419 CCAAAATTAATAAAATGAGTTCAGGCT 57.343 29.630 0.00 0.00 0.00 4.58
2188 2541 9.435688 ACCAAAATTAATAAAATGAGTTCAGGC 57.564 29.630 0.00 0.00 0.00 4.85
2217 2570 9.429359 CTGACATTCTTGTAAATACTCTCTGTT 57.571 33.333 0.00 0.00 35.79 3.16
2218 2571 8.807118 TCTGACATTCTTGTAAATACTCTCTGT 58.193 33.333 0.00 0.00 35.79 3.41
2219 2572 9.299963 CTCTGACATTCTTGTAAATACTCTCTG 57.700 37.037 0.00 0.00 35.79 3.35
2220 2573 7.978975 GCTCTGACATTCTTGTAAATACTCTCT 59.021 37.037 0.00 0.00 35.79 3.10
2221 2574 7.043722 CGCTCTGACATTCTTGTAAATACTCTC 60.044 40.741 0.00 0.00 35.79 3.20
2222 2575 6.754209 CGCTCTGACATTCTTGTAAATACTCT 59.246 38.462 0.00 0.00 35.79 3.24
2223 2576 6.752351 TCGCTCTGACATTCTTGTAAATACTC 59.248 38.462 0.00 0.00 35.79 2.59
2224 2577 6.631016 TCGCTCTGACATTCTTGTAAATACT 58.369 36.000 0.00 0.00 35.79 2.12
2225 2578 6.887376 TCGCTCTGACATTCTTGTAAATAC 57.113 37.500 0.00 0.00 35.79 1.89
2226 2579 8.630037 TCTATCGCTCTGACATTCTTGTAAATA 58.370 33.333 0.00 0.00 35.79 1.40
2227 2580 7.492524 TCTATCGCTCTGACATTCTTGTAAAT 58.507 34.615 0.00 0.00 35.79 1.40
2228 2581 6.863275 TCTATCGCTCTGACATTCTTGTAAA 58.137 36.000 0.00 0.00 35.79 2.01
2229 2582 6.451064 TCTATCGCTCTGACATTCTTGTAA 57.549 37.500 0.00 0.00 35.79 2.41
2230 2583 5.009110 CCTCTATCGCTCTGACATTCTTGTA 59.991 44.000 0.00 0.00 35.79 2.41
2231 2584 4.202101 CCTCTATCGCTCTGACATTCTTGT 60.202 45.833 0.00 0.00 39.32 3.16
2232 2585 4.037327 TCCTCTATCGCTCTGACATTCTTG 59.963 45.833 0.00 0.00 0.00 3.02
2233 2586 4.211125 TCCTCTATCGCTCTGACATTCTT 58.789 43.478 0.00 0.00 0.00 2.52
2234 2587 3.826524 TCCTCTATCGCTCTGACATTCT 58.173 45.455 0.00 0.00 0.00 2.40
2235 2588 4.277174 TCTTCCTCTATCGCTCTGACATTC 59.723 45.833 0.00 0.00 0.00 2.67
2236 2589 4.211125 TCTTCCTCTATCGCTCTGACATT 58.789 43.478 0.00 0.00 0.00 2.71
2237 2590 3.826524 TCTTCCTCTATCGCTCTGACAT 58.173 45.455 0.00 0.00 0.00 3.06
2238 2591 3.283259 TCTTCCTCTATCGCTCTGACA 57.717 47.619 0.00 0.00 0.00 3.58
2239 2592 3.880490 TCTTCTTCCTCTATCGCTCTGAC 59.120 47.826 0.00 0.00 0.00 3.51
2240 2593 4.157849 TCTTCTTCCTCTATCGCTCTGA 57.842 45.455 0.00 0.00 0.00 3.27
2241 2594 4.909696 TTCTTCTTCCTCTATCGCTCTG 57.090 45.455 0.00 0.00 0.00 3.35
2242 2595 5.923733 TTTTCTTCTTCCTCTATCGCTCT 57.076 39.130 0.00 0.00 0.00 4.09
2262 2615 8.097662 GTCCCAGCTAGATATAGCATAGTTTTT 58.902 37.037 20.82 0.00 45.11 1.94
2263 2616 7.235606 TGTCCCAGCTAGATATAGCATAGTTTT 59.764 37.037 20.82 0.00 45.11 2.43
2264 2617 6.726299 TGTCCCAGCTAGATATAGCATAGTTT 59.274 38.462 20.82 0.00 45.11 2.66
2265 2618 6.256819 TGTCCCAGCTAGATATAGCATAGTT 58.743 40.000 20.82 0.00 45.11 2.24
2266 2619 5.832221 TGTCCCAGCTAGATATAGCATAGT 58.168 41.667 20.82 0.00 45.11 2.12
2267 2620 6.389830 CTGTCCCAGCTAGATATAGCATAG 57.610 45.833 20.82 10.16 45.11 2.23
2282 2635 0.109342 GGGGTATCATGCTGTCCCAG 59.891 60.000 13.92 0.00 39.85 4.45
2283 2636 0.623031 TGGGGTATCATGCTGTCCCA 60.623 55.000 11.10 11.10 41.63 4.37
2284 2637 0.109342 CTGGGGTATCATGCTGTCCC 59.891 60.000 6.96 6.96 37.59 4.46
2285 2638 0.839946 ACTGGGGTATCATGCTGTCC 59.160 55.000 0.00 0.00 0.00 4.02
2286 2639 1.486310 TGACTGGGGTATCATGCTGTC 59.514 52.381 0.00 0.00 0.00 3.51
2287 2640 1.583556 TGACTGGGGTATCATGCTGT 58.416 50.000 0.00 0.00 0.00 4.40
2288 2641 2.715749 TTGACTGGGGTATCATGCTG 57.284 50.000 0.00 0.00 0.00 4.41
2289 2642 2.779430 TGATTGACTGGGGTATCATGCT 59.221 45.455 0.00 0.00 0.00 3.79
2290 2643 3.144506 CTGATTGACTGGGGTATCATGC 58.855 50.000 0.00 0.00 0.00 4.06
2291 2644 3.392285 TCCTGATTGACTGGGGTATCATG 59.608 47.826 0.00 0.00 38.03 3.07
2292 2645 3.668821 TCCTGATTGACTGGGGTATCAT 58.331 45.455 0.00 0.00 38.03 2.45
2293 2646 3.129262 TCCTGATTGACTGGGGTATCA 57.871 47.619 0.00 0.00 38.03 2.15
2294 2647 4.713792 AATCCTGATTGACTGGGGTATC 57.286 45.455 0.00 0.00 38.03 2.24
2295 2648 4.230502 ACAAATCCTGATTGACTGGGGTAT 59.769 41.667 0.00 0.00 38.03 2.73
2296 2649 3.591527 ACAAATCCTGATTGACTGGGGTA 59.408 43.478 0.00 0.00 38.03 3.69
2297 2650 2.379907 ACAAATCCTGATTGACTGGGGT 59.620 45.455 0.00 0.00 38.03 4.95
2298 2651 3.091633 ACAAATCCTGATTGACTGGGG 57.908 47.619 0.00 0.00 38.03 4.96
2299 2652 4.768968 AGAAACAAATCCTGATTGACTGGG 59.231 41.667 0.00 0.00 38.03 4.45
2300 2653 5.336213 CCAGAAACAAATCCTGATTGACTGG 60.336 44.000 0.00 0.00 38.68 4.00
2301 2654 5.242393 ACCAGAAACAAATCCTGATTGACTG 59.758 40.000 0.00 0.00 0.00 3.51
2302 2655 5.388654 ACCAGAAACAAATCCTGATTGACT 58.611 37.500 0.00 0.00 0.00 3.41
2303 2656 5.335976 GGACCAGAAACAAATCCTGATTGAC 60.336 44.000 0.00 0.00 0.00 3.18
2304 2657 4.766891 GGACCAGAAACAAATCCTGATTGA 59.233 41.667 0.00 0.00 0.00 2.57
2305 2658 4.768968 AGGACCAGAAACAAATCCTGATTG 59.231 41.667 0.00 0.00 38.40 2.67
2306 2659 5.003096 AGGACCAGAAACAAATCCTGATT 57.997 39.130 0.00 0.00 38.40 2.57
2307 2660 4.593956 GAGGACCAGAAACAAATCCTGAT 58.406 43.478 0.00 0.00 39.96 2.90
2308 2661 3.557054 CGAGGACCAGAAACAAATCCTGA 60.557 47.826 0.00 0.00 39.96 3.86
2309 2662 2.744202 CGAGGACCAGAAACAAATCCTG 59.256 50.000 0.00 0.00 39.96 3.86
2310 2663 2.372172 ACGAGGACCAGAAACAAATCCT 59.628 45.455 0.00 0.00 42.62 3.24
2311 2664 2.779506 ACGAGGACCAGAAACAAATCC 58.220 47.619 0.00 0.00 0.00 3.01
2312 2665 4.537015 CAAACGAGGACCAGAAACAAATC 58.463 43.478 0.00 0.00 0.00 2.17
2313 2666 3.243401 GCAAACGAGGACCAGAAACAAAT 60.243 43.478 0.00 0.00 0.00 2.32
2314 2667 2.098443 GCAAACGAGGACCAGAAACAAA 59.902 45.455 0.00 0.00 0.00 2.83
2315 2668 1.673920 GCAAACGAGGACCAGAAACAA 59.326 47.619 0.00 0.00 0.00 2.83
2316 2669 1.305201 GCAAACGAGGACCAGAAACA 58.695 50.000 0.00 0.00 0.00 2.83
2317 2670 1.002792 GTGCAAACGAGGACCAGAAAC 60.003 52.381 0.00 0.00 0.00 2.78
2318 2671 1.305201 GTGCAAACGAGGACCAGAAA 58.695 50.000 0.00 0.00 0.00 2.52
2319 2672 0.179234 TGTGCAAACGAGGACCAGAA 59.821 50.000 0.00 0.00 0.00 3.02
2320 2673 0.396435 ATGTGCAAACGAGGACCAGA 59.604 50.000 0.00 0.00 0.00 3.86
2321 2674 0.798776 GATGTGCAAACGAGGACCAG 59.201 55.000 0.00 0.00 0.00 4.00
2322 2675 0.396435 AGATGTGCAAACGAGGACCA 59.604 50.000 0.00 0.00 0.00 4.02
2323 2676 2.000447 GTAGATGTGCAAACGAGGACC 59.000 52.381 0.00 0.00 0.00 4.46
2324 2677 2.668457 CAGTAGATGTGCAAACGAGGAC 59.332 50.000 0.00 0.00 0.00 3.85
2325 2678 2.353704 CCAGTAGATGTGCAAACGAGGA 60.354 50.000 0.00 0.00 0.00 3.71
2326 2679 2.002586 CCAGTAGATGTGCAAACGAGG 58.997 52.381 0.00 0.00 0.00 4.63
2327 2680 2.668457 GTCCAGTAGATGTGCAAACGAG 59.332 50.000 0.00 0.00 0.00 4.18
2328 2681 2.611971 GGTCCAGTAGATGTGCAAACGA 60.612 50.000 0.00 0.00 0.00 3.85
2329 2682 1.732259 GGTCCAGTAGATGTGCAAACG 59.268 52.381 0.00 0.00 0.00 3.60
2330 2683 2.778299 TGGTCCAGTAGATGTGCAAAC 58.222 47.619 0.00 0.00 0.00 2.93
2331 2684 3.411446 CTTGGTCCAGTAGATGTGCAAA 58.589 45.455 0.00 0.00 0.00 3.68
2332 2685 2.290260 CCTTGGTCCAGTAGATGTGCAA 60.290 50.000 0.00 0.00 0.00 4.08
2333 2686 1.278985 CCTTGGTCCAGTAGATGTGCA 59.721 52.381 0.00 0.00 0.00 4.57
2334 2687 2.014068 GCCTTGGTCCAGTAGATGTGC 61.014 57.143 0.00 0.00 0.00 4.57
2335 2688 1.278985 TGCCTTGGTCCAGTAGATGTG 59.721 52.381 0.00 0.00 0.00 3.21
2336 2689 1.556911 CTGCCTTGGTCCAGTAGATGT 59.443 52.381 0.00 0.00 0.00 3.06
2337 2690 1.833630 TCTGCCTTGGTCCAGTAGATG 59.166 52.381 0.00 0.00 0.00 2.90
2338 2691 2.114616 CTCTGCCTTGGTCCAGTAGAT 58.885 52.381 0.30 0.00 0.00 1.98
2339 2692 1.561643 CTCTGCCTTGGTCCAGTAGA 58.438 55.000 0.00 0.00 0.00 2.59
2340 2693 0.539051 CCTCTGCCTTGGTCCAGTAG 59.461 60.000 0.00 0.00 0.00 2.57
2341 2694 0.178903 ACCTCTGCCTTGGTCCAGTA 60.179 55.000 0.00 0.00 29.18 2.74
2342 2695 1.062488 AACCTCTGCCTTGGTCCAGT 61.062 55.000 0.00 0.00 35.17 4.00
2343 2696 0.322008 GAACCTCTGCCTTGGTCCAG 60.322 60.000 0.00 0.00 35.17 3.86
2344 2697 1.059584 TGAACCTCTGCCTTGGTCCA 61.060 55.000 0.00 0.00 35.17 4.02
2345 2698 0.110486 TTGAACCTCTGCCTTGGTCC 59.890 55.000 0.00 0.00 35.17 4.46
2346 2699 1.981256 TTTGAACCTCTGCCTTGGTC 58.019 50.000 0.00 0.00 35.17 4.02
2347 2700 2.452600 TTTTGAACCTCTGCCTTGGT 57.547 45.000 0.00 0.00 38.35 3.67
2348 2701 4.202243 TGAAATTTTGAACCTCTGCCTTGG 60.202 41.667 0.00 0.00 0.00 3.61
2349 2702 4.947645 TGAAATTTTGAACCTCTGCCTTG 58.052 39.130 0.00 0.00 0.00 3.61
2350 2703 4.651045 ACTGAAATTTTGAACCTCTGCCTT 59.349 37.500 0.00 0.00 0.00 4.35
2351 2704 4.038402 CACTGAAATTTTGAACCTCTGCCT 59.962 41.667 0.00 0.00 0.00 4.75
2352 2705 4.301628 CACTGAAATTTTGAACCTCTGCC 58.698 43.478 0.00 0.00 0.00 4.85
2353 2706 4.301628 CCACTGAAATTTTGAACCTCTGC 58.698 43.478 0.00 0.00 0.00 4.26
2379 2732 6.026513 GCAGATGAACTAAACTGAAGAATGC 58.973 40.000 0.00 0.00 32.90 3.56
2390 2743 3.582647 TCTGGTCCAGCAGATGAACTAAA 59.417 43.478 14.64 0.00 0.00 1.85
2462 2827 2.099405 TCGTGCATCAGGAGTGTATGA 58.901 47.619 0.00 0.00 0.00 2.15
2489 4015 2.158726 ACTGCCCCTTGAACGAACTTTA 60.159 45.455 0.00 0.00 0.00 1.85
2490 4016 1.318576 CTGCCCCTTGAACGAACTTT 58.681 50.000 0.00 0.00 0.00 2.66
2496 4022 0.872388 GTTGTACTGCCCCTTGAACG 59.128 55.000 0.00 0.00 0.00 3.95
2505 4031 2.334838 CGGTGACTAAGTTGTACTGCC 58.665 52.381 0.00 0.00 0.00 4.85
2506 4032 2.334838 CCGGTGACTAAGTTGTACTGC 58.665 52.381 0.00 0.00 0.00 4.40
2511 4042 0.470766 TTGGCCGGTGACTAAGTTGT 59.529 50.000 1.90 0.00 0.00 3.32
2626 4159 2.787129 TCATCGTTCGCTGCTTAATACG 59.213 45.455 0.00 0.68 0.00 3.06
2690 4223 2.745281 GGACGAACCCGATGATGAAAAA 59.255 45.455 0.00 0.00 39.50 1.94
2692 4225 2.018542 GGACGAACCCGATGATGAAA 57.981 50.000 0.00 0.00 39.50 2.69
2739 4280 3.515502 AGAGAAAGATTGACGGATCACCA 59.484 43.478 0.00 0.00 33.38 4.17
2747 4288 5.719173 AGGAAGAGAAGAGAAAGATTGACG 58.281 41.667 0.00 0.00 0.00 4.35
2751 4292 6.694445 TTGGAGGAAGAGAAGAGAAAGATT 57.306 37.500 0.00 0.00 0.00 2.40
2761 4302 5.770162 GGAGAATTGTTTTGGAGGAAGAGAA 59.230 40.000 0.00 0.00 0.00 2.87
2777 4318 5.522824 GGTTAGCTTACCTTACGGAGAATTG 59.477 44.000 14.69 0.00 35.23 2.32
2778 4319 5.188359 TGGTTAGCTTACCTTACGGAGAATT 59.812 40.000 21.76 0.00 39.04 2.17
2780 4321 4.082026 GTGGTTAGCTTACCTTACGGAGAA 60.082 45.833 21.76 0.00 39.04 2.87
2781 4322 3.445096 GTGGTTAGCTTACCTTACGGAGA 59.555 47.826 21.76 0.00 39.04 3.71
2783 4324 3.164268 TGTGGTTAGCTTACCTTACGGA 58.836 45.455 21.76 0.00 39.04 4.69
2784 4325 3.056322 ACTGTGGTTAGCTTACCTTACGG 60.056 47.826 21.76 18.47 39.04 4.02
2786 4327 8.557592 AATTAACTGTGGTTAGCTTACCTTAC 57.442 34.615 21.76 13.36 38.86 2.34
2787 4328 9.577222 AAAATTAACTGTGGTTAGCTTACCTTA 57.423 29.630 21.76 9.81 38.86 2.69
2788 4329 8.473358 AAAATTAACTGTGGTTAGCTTACCTT 57.527 30.769 21.76 10.74 38.86 3.50
2790 4331 8.021396 CAGAAAATTAACTGTGGTTAGCTTACC 58.979 37.037 15.08 15.08 38.86 2.85
2792 4333 8.911918 TCAGAAAATTAACTGTGGTTAGCTTA 57.088 30.769 0.00 0.00 38.86 3.09
2793 4334 7.817418 TCAGAAAATTAACTGTGGTTAGCTT 57.183 32.000 0.00 0.00 38.86 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.