Multiple sequence alignment - TraesCS4B01G283900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G283900 chr4B 100.000 3358 0 0 1 3358 567186233 567189590 0.000000e+00 6202.0
1 TraesCS4B01G283900 chr4B 98.119 691 13 0 1 691 187623382 187624072 0.000000e+00 1205.0
2 TraesCS4B01G283900 chr4B 75.225 1445 290 33 985 2411 567192873 567191479 1.020000e-174 623.0
3 TraesCS4B01G283900 chr4B 78.954 746 124 18 996 1731 567590059 567589337 8.430000e-131 477.0
4 TraesCS4B01G283900 chr4B 80.252 476 48 19 2489 2938 567587524 567587069 1.940000e-82 316.0
5 TraesCS4B01G283900 chr4B 88.095 126 14 1 2484 2609 567421209 567421085 7.510000e-32 148.0
6 TraesCS4B01G283900 chr4B 96.774 31 1 0 783 813 335063472 335063502 6.000000e-03 52.8
7 TraesCS4B01G283900 chr4B 96.774 31 1 0 783 813 335082750 335082780 6.000000e-03 52.8
8 TraesCS4B01G283900 chr4A 96.968 2144 45 4 1224 3358 13590469 13588337 0.000000e+00 3581.0
9 TraesCS4B01G283900 chr4A 98.408 691 11 0 1 691 667320195 667319505 0.000000e+00 1216.0
10 TraesCS4B01G283900 chr4A 98.413 630 10 0 62 691 667310371 667309742 0.000000e+00 1109.0
11 TraesCS4B01G283900 chr4A 79.259 810 142 15 1018 1822 13518020 13518808 2.950000e-150 542.0
12 TraesCS4B01G283900 chr4A 80.731 711 108 12 1014 1724 13150723 13151404 8.250000e-146 527.0
13 TraesCS4B01G283900 chr4A 89.736 341 20 9 892 1232 13591019 13590694 4.010000e-114 422.0
14 TraesCS4B01G283900 chr4A 86.585 328 42 2 985 1312 13585106 13585431 8.860000e-96 361.0
15 TraesCS4B01G283900 chr3A 97.685 691 16 0 1 691 429488302 429488992 0.000000e+00 1188.0
16 TraesCS4B01G283900 chr3A 97.540 691 17 0 1 691 234974421 234975111 0.000000e+00 1182.0
17 TraesCS4B01G283900 chr7D 95.948 691 28 0 1 691 556847088 556846398 0.000000e+00 1122.0
18 TraesCS4B01G283900 chr3D 94.935 691 35 0 1 691 228163206 228162516 0.000000e+00 1083.0
19 TraesCS4B01G283900 chr3D 78.382 865 165 18 996 1847 435489218 435488363 2.950000e-150 542.0
20 TraesCS4B01G283900 chr3D 100.000 28 0 0 786 813 594502513 594502486 6.000000e-03 52.8
21 TraesCS4B01G283900 chr2B 93.931 692 39 3 1 691 625444563 625443874 0.000000e+00 1042.0
22 TraesCS4B01G283900 chr6D 93.343 691 46 0 1 691 218125399 218124709 0.000000e+00 1022.0
23 TraesCS4B01G283900 chr4D 76.236 1456 275 38 985 2418 454439626 454438220 0.000000e+00 706.0
24 TraesCS4B01G283900 chr4D 81.206 713 111 12 1018 1730 454991172 454990483 1.360000e-153 553.0
25 TraesCS4B01G283900 chr4D 79.404 738 126 14 996 1730 455090431 455089717 6.470000e-137 497.0
26 TraesCS4B01G283900 chr4D 77.765 841 151 21 996 1822 454809770 454808952 5.040000e-133 484.0
27 TraesCS4B01G283900 chr4D 73.512 1042 229 28 1383 2397 454412879 454411858 5.330000e-93 351.0
28 TraesCS4B01G283900 chr4D 77.801 482 89 10 1246 1727 454839411 454838948 7.090000e-72 281.0
29 TraesCS4B01G283900 chr4D 90.260 154 15 0 2489 2642 455087908 455087755 5.680000e-48 202.0
30 TraesCS4B01G283900 chr4D 95.960 99 4 0 3260 3358 454410142 454410240 9.640000e-36 161.0
31 TraesCS4B01G283900 chr4D 93.939 99 6 0 3260 3358 454436280 454436378 2.090000e-32 150.0
32 TraesCS4B01G283900 chr4D 90.000 80 5 1 2491 2570 454830388 454830312 2.130000e-17 100.0
33 TraesCS4B01G283900 chr4D 94.643 56 3 0 2484 2539 454986339 454986284 1.660000e-13 87.9
34 TraesCS4B01G283900 chr6A 76.284 409 75 14 2949 3356 7609224 7608837 7.350000e-47 198.0
35 TraesCS4B01G283900 chr6A 96.774 31 1 0 783 813 247530004 247530034 6.000000e-03 52.8
36 TraesCS4B01G283900 chr6A 96.774 31 1 0 783 813 247531703 247531733 6.000000e-03 52.8
37 TraesCS4B01G283900 chr3B 92.308 91 6 1 697 787 606749240 606749151 9.780000e-26 128.0
38 TraesCS4B01G283900 chr1D 92.157 51 2 1 3214 3264 228026238 228026190 1.670000e-08 71.3
39 TraesCS4B01G283900 chr5A 88.333 60 4 3 3197 3256 316836703 316836647 6.010000e-08 69.4
40 TraesCS4B01G283900 chr5A 100.000 28 0 0 786 813 419603754 419603727 6.000000e-03 52.8
41 TraesCS4B01G283900 chrUn 100.000 28 0 0 786 813 147885372 147885345 6.000000e-03 52.8
42 TraesCS4B01G283900 chrUn 100.000 28 0 0 786 813 147887071 147887044 6.000000e-03 52.8
43 TraesCS4B01G283900 chr1A 96.774 31 1 0 783 813 111469628 111469658 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G283900 chr4B 567186233 567189590 3357 False 6202.0 6202 100.000 1 3358 1 chr4B.!!$F4 3357
1 TraesCS4B01G283900 chr4B 187623382 187624072 690 False 1205.0 1205 98.119 1 691 1 chr4B.!!$F1 690
2 TraesCS4B01G283900 chr4B 567191479 567192873 1394 True 623.0 623 75.225 985 2411 1 chr4B.!!$R1 1426
3 TraesCS4B01G283900 chr4B 567587069 567590059 2990 True 396.5 477 79.603 996 2938 2 chr4B.!!$R3 1942
4 TraesCS4B01G283900 chr4A 13588337 13591019 2682 True 2001.5 3581 93.352 892 3358 2 chr4A.!!$R3 2466
5 TraesCS4B01G283900 chr4A 667319505 667320195 690 True 1216.0 1216 98.408 1 691 1 chr4A.!!$R2 690
6 TraesCS4B01G283900 chr4A 667309742 667310371 629 True 1109.0 1109 98.413 62 691 1 chr4A.!!$R1 629
7 TraesCS4B01G283900 chr4A 13518020 13518808 788 False 542.0 542 79.259 1018 1822 1 chr4A.!!$F2 804
8 TraesCS4B01G283900 chr4A 13150723 13151404 681 False 527.0 527 80.731 1014 1724 1 chr4A.!!$F1 710
9 TraesCS4B01G283900 chr3A 429488302 429488992 690 False 1188.0 1188 97.685 1 691 1 chr3A.!!$F2 690
10 TraesCS4B01G283900 chr3A 234974421 234975111 690 False 1182.0 1182 97.540 1 691 1 chr3A.!!$F1 690
11 TraesCS4B01G283900 chr7D 556846398 556847088 690 True 1122.0 1122 95.948 1 691 1 chr7D.!!$R1 690
12 TraesCS4B01G283900 chr3D 228162516 228163206 690 True 1083.0 1083 94.935 1 691 1 chr3D.!!$R1 690
13 TraesCS4B01G283900 chr3D 435488363 435489218 855 True 542.0 542 78.382 996 1847 1 chr3D.!!$R2 851
14 TraesCS4B01G283900 chr2B 625443874 625444563 689 True 1042.0 1042 93.931 1 691 1 chr2B.!!$R1 690
15 TraesCS4B01G283900 chr6D 218124709 218125399 690 True 1022.0 1022 93.343 1 691 1 chr6D.!!$R1 690
16 TraesCS4B01G283900 chr4D 454438220 454439626 1406 True 706.0 706 76.236 985 2418 1 chr4D.!!$R2 1433
17 TraesCS4B01G283900 chr4D 454990483 454991172 689 True 553.0 553 81.206 1018 1730 1 chr4D.!!$R7 712
18 TraesCS4B01G283900 chr4D 454808952 454809770 818 True 484.0 484 77.765 996 1822 1 chr4D.!!$R3 826
19 TraesCS4B01G283900 chr4D 454411858 454412879 1021 True 351.0 351 73.512 1383 2397 1 chr4D.!!$R1 1014
20 TraesCS4B01G283900 chr4D 455087755 455090431 2676 True 349.5 497 84.832 996 2642 2 chr4D.!!$R8 1646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 770 0.036765 GGATGGTGCCGTTGTCACTA 60.037 55.0 0.00 0.0 34.97 2.74 F
933 934 0.439985 CATGTGACTTCGCGTCTTGG 59.560 55.0 5.77 0.0 43.25 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2529 3.110358 CCAATCATGCATGCGTGTTTAG 58.890 45.455 33.08 22.45 34.75 1.85 R
2572 3994 8.287503 GGGTCAAAGTTTATAATTAGCATACCG 58.712 37.037 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
304 305 5.569059 GGCATGAAGACAATTAAACAACTCG 59.431 40.000 0.00 0.00 0.00 4.18
466 467 0.944386 TTTCTTCTGCCGTGACTTGC 59.056 50.000 0.00 0.00 0.00 4.01
479 480 3.187700 GTGACTTGCGGAATATCGTCTT 58.812 45.455 7.97 0.00 0.00 3.01
536 537 0.868406 CGCCCCGAATAGAGATTTGC 59.132 55.000 0.00 0.00 0.00 3.68
594 595 1.530891 CGATCCGCCCCTCCTCTTA 60.531 63.158 0.00 0.00 0.00 2.10
639 640 0.952497 CGATGCTGCCCATTAGCGAT 60.952 55.000 0.00 0.00 44.01 4.58
691 692 4.567959 CCCATCAAAATGAAATCGGCTTTC 59.432 41.667 0.00 0.00 43.05 2.62
697 698 2.925578 TGAAATCGGCTTTCATGCTG 57.074 45.000 3.07 0.00 46.45 4.41
698 699 2.435422 TGAAATCGGCTTTCATGCTGA 58.565 42.857 3.07 0.35 46.45 4.26
701 702 2.174334 TCGGCTTTCATGCTGAAGC 58.826 52.632 15.58 15.58 44.34 3.86
715 716 4.766969 GCTGAAGCAAAGAAACAACAAG 57.233 40.909 0.00 0.00 41.59 3.16
716 717 4.423732 GCTGAAGCAAAGAAACAACAAGA 58.576 39.130 0.00 0.00 41.59 3.02
717 718 4.501921 GCTGAAGCAAAGAAACAACAAGAG 59.498 41.667 0.00 0.00 41.59 2.85
718 719 5.677091 GCTGAAGCAAAGAAACAACAAGAGA 60.677 40.000 0.00 0.00 41.59 3.10
719 720 6.266168 TGAAGCAAAGAAACAACAAGAGAA 57.734 33.333 0.00 0.00 0.00 2.87
720 721 6.324819 TGAAGCAAAGAAACAACAAGAGAAG 58.675 36.000 0.00 0.00 0.00 2.85
721 722 6.150976 TGAAGCAAAGAAACAACAAGAGAAGA 59.849 34.615 0.00 0.00 0.00 2.87
722 723 6.705863 AGCAAAGAAACAACAAGAGAAGAT 57.294 33.333 0.00 0.00 0.00 2.40
723 724 6.501781 AGCAAAGAAACAACAAGAGAAGATG 58.498 36.000 0.00 0.00 0.00 2.90
724 725 5.689068 GCAAAGAAACAACAAGAGAAGATGG 59.311 40.000 0.00 0.00 0.00 3.51
725 726 6.681368 GCAAAGAAACAACAAGAGAAGATGGT 60.681 38.462 0.00 0.00 0.00 3.55
726 727 6.382869 AAGAAACAACAAGAGAAGATGGTG 57.617 37.500 0.00 0.00 40.12 4.17
727 728 4.276926 AGAAACAACAAGAGAAGATGGTGC 59.723 41.667 0.00 0.00 37.78 5.01
728 729 3.498774 ACAACAAGAGAAGATGGTGCT 57.501 42.857 0.00 0.00 37.78 4.40
729 730 3.144506 ACAACAAGAGAAGATGGTGCTG 58.855 45.455 0.00 0.00 37.78 4.41
730 731 3.144506 CAACAAGAGAAGATGGTGCTGT 58.855 45.455 0.00 0.00 0.00 4.40
731 732 3.498774 ACAAGAGAAGATGGTGCTGTT 57.501 42.857 0.00 0.00 0.00 3.16
732 733 4.623932 ACAAGAGAAGATGGTGCTGTTA 57.376 40.909 0.00 0.00 0.00 2.41
733 734 4.573900 ACAAGAGAAGATGGTGCTGTTAG 58.426 43.478 0.00 0.00 0.00 2.34
734 735 4.284490 ACAAGAGAAGATGGTGCTGTTAGA 59.716 41.667 0.00 0.00 0.00 2.10
735 736 5.221722 ACAAGAGAAGATGGTGCTGTTAGAA 60.222 40.000 0.00 0.00 0.00 2.10
736 737 5.489792 AGAGAAGATGGTGCTGTTAGAAA 57.510 39.130 0.00 0.00 0.00 2.52
737 738 5.869579 AGAGAAGATGGTGCTGTTAGAAAA 58.130 37.500 0.00 0.00 0.00 2.29
738 739 6.479884 AGAGAAGATGGTGCTGTTAGAAAAT 58.520 36.000 0.00 0.00 0.00 1.82
739 740 7.624549 AGAGAAGATGGTGCTGTTAGAAAATA 58.375 34.615 0.00 0.00 0.00 1.40
740 741 8.103305 AGAGAAGATGGTGCTGTTAGAAAATAA 58.897 33.333 0.00 0.00 0.00 1.40
741 742 8.635765 AGAAGATGGTGCTGTTAGAAAATAAA 57.364 30.769 0.00 0.00 0.00 1.40
742 743 9.077885 AGAAGATGGTGCTGTTAGAAAATAAAA 57.922 29.630 0.00 0.00 0.00 1.52
743 744 9.691362 GAAGATGGTGCTGTTAGAAAATAAAAA 57.309 29.630 0.00 0.00 0.00 1.94
744 745 9.696917 AAGATGGTGCTGTTAGAAAATAAAAAG 57.303 29.630 0.00 0.00 0.00 2.27
745 746 8.306761 AGATGGTGCTGTTAGAAAATAAAAAGG 58.693 33.333 0.00 0.00 0.00 3.11
746 747 6.220201 TGGTGCTGTTAGAAAATAAAAAGGC 58.780 36.000 0.00 0.00 0.00 4.35
747 748 6.041523 TGGTGCTGTTAGAAAATAAAAAGGCT 59.958 34.615 0.00 0.00 0.00 4.58
748 749 6.366061 GGTGCTGTTAGAAAATAAAAAGGCTG 59.634 38.462 0.00 0.00 0.00 4.85
749 750 7.145323 GTGCTGTTAGAAAATAAAAAGGCTGA 58.855 34.615 0.00 0.00 0.00 4.26
750 751 7.327032 GTGCTGTTAGAAAATAAAAAGGCTGAG 59.673 37.037 0.00 0.00 0.00 3.35
751 752 6.808704 GCTGTTAGAAAATAAAAAGGCTGAGG 59.191 38.462 0.00 0.00 0.00 3.86
752 753 7.309194 GCTGTTAGAAAATAAAAAGGCTGAGGA 60.309 37.037 0.00 0.00 0.00 3.71
753 754 8.650143 TGTTAGAAAATAAAAAGGCTGAGGAT 57.350 30.769 0.00 0.00 0.00 3.24
754 755 8.522830 TGTTAGAAAATAAAAAGGCTGAGGATG 58.477 33.333 0.00 0.00 0.00 3.51
755 756 6.535963 AGAAAATAAAAAGGCTGAGGATGG 57.464 37.500 0.00 0.00 0.00 3.51
756 757 6.019108 AGAAAATAAAAAGGCTGAGGATGGT 58.981 36.000 0.00 0.00 0.00 3.55
757 758 5.665916 AAATAAAAAGGCTGAGGATGGTG 57.334 39.130 0.00 0.00 0.00 4.17
758 759 1.260544 AAAAAGGCTGAGGATGGTGC 58.739 50.000 0.00 0.00 0.00 5.01
759 760 0.613012 AAAAGGCTGAGGATGGTGCC 60.613 55.000 0.00 0.00 45.21 5.01
761 762 4.101448 GGCTGAGGATGGTGCCGT 62.101 66.667 0.00 0.00 35.79 5.68
762 763 2.045926 GCTGAGGATGGTGCCGTT 60.046 61.111 0.00 0.00 0.00 4.44
763 764 2.401766 GCTGAGGATGGTGCCGTTG 61.402 63.158 0.00 0.00 0.00 4.10
764 765 1.003355 CTGAGGATGGTGCCGTTGT 60.003 57.895 0.00 0.00 0.00 3.32
765 766 1.003839 TGAGGATGGTGCCGTTGTC 60.004 57.895 0.00 0.00 0.00 3.18
766 767 1.003839 GAGGATGGTGCCGTTGTCA 60.004 57.895 0.00 0.00 0.00 3.58
767 768 1.298859 GAGGATGGTGCCGTTGTCAC 61.299 60.000 0.00 0.00 0.00 3.67
768 769 1.302511 GGATGGTGCCGTTGTCACT 60.303 57.895 0.00 0.00 34.97 3.41
769 770 0.036765 GGATGGTGCCGTTGTCACTA 60.037 55.000 0.00 0.00 34.97 2.74
770 771 1.609580 GGATGGTGCCGTTGTCACTAA 60.610 52.381 0.00 0.00 34.97 2.24
771 772 2.147958 GATGGTGCCGTTGTCACTAAA 58.852 47.619 0.00 0.00 34.97 1.85
772 773 2.039818 TGGTGCCGTTGTCACTAAAA 57.960 45.000 0.00 0.00 34.97 1.52
773 774 2.366533 TGGTGCCGTTGTCACTAAAAA 58.633 42.857 0.00 0.00 34.97 1.94
792 793 4.926140 AAAACTTTCTCTGCTTTCAGGG 57.074 40.909 0.00 0.00 42.26 4.45
793 794 2.575805 ACTTTCTCTGCTTTCAGGGG 57.424 50.000 0.00 0.00 41.22 4.79
794 795 1.777272 ACTTTCTCTGCTTTCAGGGGT 59.223 47.619 0.00 0.00 41.22 4.95
795 796 2.979678 ACTTTCTCTGCTTTCAGGGGTA 59.020 45.455 0.00 0.00 41.22 3.69
796 797 3.008485 ACTTTCTCTGCTTTCAGGGGTAG 59.992 47.826 0.00 0.00 41.22 3.18
797 798 2.623418 TCTCTGCTTTCAGGGGTAGA 57.377 50.000 0.00 0.00 41.22 2.59
798 799 2.180276 TCTCTGCTTTCAGGGGTAGAC 58.820 52.381 0.00 0.00 41.22 2.59
799 800 1.902508 CTCTGCTTTCAGGGGTAGACA 59.097 52.381 0.00 0.00 40.69 3.41
800 801 1.623811 TCTGCTTTCAGGGGTAGACAC 59.376 52.381 0.00 0.00 40.69 3.67
801 802 0.690762 TGCTTTCAGGGGTAGACACC 59.309 55.000 0.00 0.00 44.96 4.16
812 813 3.881937 GGTAGACACCCGTATCAAGTT 57.118 47.619 0.00 0.00 39.11 2.66
813 814 3.518590 GGTAGACACCCGTATCAAGTTG 58.481 50.000 0.00 0.00 39.11 3.16
814 815 3.194116 GGTAGACACCCGTATCAAGTTGA 59.806 47.826 8.27 8.27 39.11 3.18
815 816 4.142004 GGTAGACACCCGTATCAAGTTGAT 60.142 45.833 21.57 21.57 38.64 2.57
816 817 3.861840 AGACACCCGTATCAAGTTGATG 58.138 45.455 25.48 13.34 37.70 3.07
817 818 3.260884 AGACACCCGTATCAAGTTGATGT 59.739 43.478 25.48 16.27 37.70 3.06
818 819 3.596214 ACACCCGTATCAAGTTGATGTC 58.404 45.455 25.48 17.21 37.70 3.06
819 820 3.007506 ACACCCGTATCAAGTTGATGTCA 59.992 43.478 25.48 5.71 37.70 3.58
820 821 4.191544 CACCCGTATCAAGTTGATGTCAT 58.808 43.478 25.48 4.97 37.70 3.06
821 822 4.271049 CACCCGTATCAAGTTGATGTCATC 59.729 45.833 25.48 5.83 37.70 2.92
822 823 4.162320 ACCCGTATCAAGTTGATGTCATCT 59.838 41.667 25.48 3.54 37.70 2.90
823 824 4.747108 CCCGTATCAAGTTGATGTCATCTC 59.253 45.833 25.48 7.30 37.70 2.75
824 825 5.351458 CCGTATCAAGTTGATGTCATCTCA 58.649 41.667 25.48 2.85 37.70 3.27
825 826 5.461407 CCGTATCAAGTTGATGTCATCTCAG 59.539 44.000 25.48 7.98 37.70 3.35
826 827 6.038985 CGTATCAAGTTGATGTCATCTCAGT 58.961 40.000 25.48 0.91 37.70 3.41
827 828 6.020041 CGTATCAAGTTGATGTCATCTCAGTG 60.020 42.308 25.48 7.40 37.70 3.66
828 829 3.999001 TCAAGTTGATGTCATCTCAGTGC 59.001 43.478 13.90 0.00 0.00 4.40
829 830 3.977134 AGTTGATGTCATCTCAGTGCT 57.023 42.857 13.90 1.21 0.00 4.40
830 831 3.597255 AGTTGATGTCATCTCAGTGCTG 58.403 45.455 13.90 0.00 0.00 4.41
831 832 3.260128 AGTTGATGTCATCTCAGTGCTGA 59.740 43.478 13.90 1.69 38.06 4.26
839 840 3.128375 TCAGTGCTGAGTGTCGCA 58.872 55.556 0.00 0.00 34.14 5.10
842 843 2.354656 GTGCTGAGTGTCGCACGA 60.355 61.111 0.00 0.00 45.74 4.35
843 844 1.949133 GTGCTGAGTGTCGCACGAA 60.949 57.895 0.00 0.00 45.74 3.85
844 845 1.949133 TGCTGAGTGTCGCACGAAC 60.949 57.895 0.00 0.00 39.64 3.95
845 846 2.988549 GCTGAGTGTCGCACGAACG 61.989 63.158 0.00 0.00 39.64 3.95
846 847 2.354188 TGAGTGTCGCACGAACGG 60.354 61.111 0.00 0.00 39.64 4.44
847 848 2.050714 GAGTGTCGCACGAACGGA 60.051 61.111 0.00 0.00 39.64 4.69
848 849 2.354305 AGTGTCGCACGAACGGAC 60.354 61.111 0.00 0.00 39.64 4.79
849 850 2.656007 GTGTCGCACGAACGGACA 60.656 61.111 0.00 0.45 0.00 4.02
850 851 2.656007 TGTCGCACGAACGGACAC 60.656 61.111 0.00 0.00 0.00 3.67
852 853 4.986587 TCGCACGAACGGACACGG 62.987 66.667 0.00 0.00 46.48 4.94
857 858 4.789075 CGAACGGACACGGCGGAT 62.789 66.667 13.24 0.00 46.48 4.18
858 859 3.186047 GAACGGACACGGCGGATG 61.186 66.667 13.24 3.44 46.48 3.51
859 860 3.927163 GAACGGACACGGCGGATGT 62.927 63.158 13.24 7.47 46.48 3.06
860 861 3.524648 AACGGACACGGCGGATGTT 62.525 57.895 13.24 5.64 46.48 2.71
861 862 3.186047 CGGACACGGCGGATGTTC 61.186 66.667 13.24 5.23 36.18 3.18
862 863 3.186047 GGACACGGCGGATGTTCG 61.186 66.667 13.24 0.00 0.00 3.95
869 870 3.487202 GCGGATGTTCGCGAGCAA 61.487 61.111 29.09 13.13 46.23 3.91
870 871 2.813179 GCGGATGTTCGCGAGCAAT 61.813 57.895 29.09 17.16 46.23 3.56
871 872 1.273887 CGGATGTTCGCGAGCAATC 59.726 57.895 29.09 23.18 0.00 2.67
872 873 1.643832 GGATGTTCGCGAGCAATCC 59.356 57.895 29.09 27.06 0.00 3.01
873 874 1.273887 GATGTTCGCGAGCAATCCG 59.726 57.895 29.09 0.00 0.00 4.18
885 886 2.553079 GCAATCCGCGTTTTCCATAA 57.447 45.000 4.92 0.00 0.00 1.90
886 887 3.078594 GCAATCCGCGTTTTCCATAAT 57.921 42.857 4.92 0.00 0.00 1.28
887 888 4.217754 GCAATCCGCGTTTTCCATAATA 57.782 40.909 4.92 0.00 0.00 0.98
888 889 4.794169 GCAATCCGCGTTTTCCATAATAT 58.206 39.130 4.92 0.00 0.00 1.28
889 890 5.933790 GCAATCCGCGTTTTCCATAATATA 58.066 37.500 4.92 0.00 0.00 0.86
890 891 6.375377 GCAATCCGCGTTTTCCATAATATAA 58.625 36.000 4.92 0.00 0.00 0.98
898 899 7.744715 CGCGTTTTCCATAATATAAACATCTCC 59.255 37.037 0.00 0.00 32.28 3.71
917 918 3.530535 TCCATGATGTCACCGTTACATG 58.469 45.455 3.03 0.00 37.69 3.21
933 934 0.439985 CATGTGACTTCGCGTCTTGG 59.560 55.000 5.77 0.00 43.25 3.61
947 948 3.479006 CGTCTTGGCGTTTTCTGTTATG 58.521 45.455 0.00 0.00 0.00 1.90
952 953 5.178623 TCTTGGCGTTTTCTGTTATGTGTAG 59.821 40.000 0.00 0.00 0.00 2.74
953 954 4.382291 TGGCGTTTTCTGTTATGTGTAGT 58.618 39.130 0.00 0.00 0.00 2.73
954 955 5.539979 TGGCGTTTTCTGTTATGTGTAGTA 58.460 37.500 0.00 0.00 0.00 1.82
955 956 5.636121 TGGCGTTTTCTGTTATGTGTAGTAG 59.364 40.000 0.00 0.00 0.00 2.57
956 957 5.445540 GGCGTTTTCTGTTATGTGTAGTAGC 60.446 44.000 0.00 0.00 0.00 3.58
957 958 5.119588 GCGTTTTCTGTTATGTGTAGTAGCA 59.880 40.000 0.00 0.00 0.00 3.49
958 959 6.669977 GCGTTTTCTGTTATGTGTAGTAGCAG 60.670 42.308 0.00 0.00 33.34 4.24
959 960 6.365247 CGTTTTCTGTTATGTGTAGTAGCAGT 59.635 38.462 0.00 0.00 33.66 4.40
960 961 7.539710 CGTTTTCTGTTATGTGTAGTAGCAGTA 59.460 37.037 0.00 0.00 33.66 2.74
961 962 8.861101 GTTTTCTGTTATGTGTAGTAGCAGTAG 58.139 37.037 0.00 0.00 33.66 2.57
962 963 7.698506 TTCTGTTATGTGTAGTAGCAGTAGT 57.301 36.000 0.00 0.00 33.66 2.73
963 964 8.797350 TTCTGTTATGTGTAGTAGCAGTAGTA 57.203 34.615 0.00 0.00 33.66 1.82
964 965 8.206325 TCTGTTATGTGTAGTAGCAGTAGTAC 57.794 38.462 0.00 0.00 36.10 2.73
965 966 7.281774 TCTGTTATGTGTAGTAGCAGTAGTACC 59.718 40.741 0.00 0.00 35.06 3.34
966 967 6.319658 TGTTATGTGTAGTAGCAGTAGTACCC 59.680 42.308 0.00 0.00 35.06 3.69
978 979 4.576463 GCAGTAGTACCCAAATCCAATCTG 59.424 45.833 0.00 0.00 0.00 2.90
1008 1012 3.077907 CCGACAACCATGGAGGGT 58.922 61.111 21.47 13.07 45.04 4.34
1112 1116 2.884207 GCTTACTTCGCCGTCCGG 60.884 66.667 0.24 0.24 37.59 5.14
1691 1981 2.620112 GCGTGGCATTGTCAGCTGT 61.620 57.895 14.67 0.00 0.00 4.40
1826 2122 4.935808 GGTTTGATCAAGTATGTCGGTCTT 59.064 41.667 8.41 0.00 0.00 3.01
2137 2454 6.115446 GGAGATTCACATTGAGGACATTGTA 58.885 40.000 0.00 0.00 38.15 2.41
2212 2529 9.608617 CATGATGACAAAACTAGAATATCATGC 57.391 33.333 0.00 0.00 41.76 4.06
2362 2682 7.710676 TTAATGCAGCTCCAAGGTAAATTTA 57.289 32.000 0.00 0.00 0.00 1.40
2572 3994 3.656559 ACTGCATTGCTCAAAACAATCC 58.343 40.909 10.49 0.00 35.58 3.01
2989 4425 2.827921 AGCTTGTGATTGAACAATCCCC 59.172 45.455 20.15 13.24 44.93 4.81
2994 4430 3.013921 GTGATTGAACAATCCCCGCTAA 58.986 45.455 20.15 2.37 44.93 3.09
3008 4444 3.052181 GCTAAGGCGGTCTTCTGAC 57.948 57.895 0.00 0.00 42.22 3.51
3027 4463 4.904116 TGACGCTCTTTACAAACTTTGTG 58.096 39.130 16.09 1.45 45.03 3.33
3039 4475 4.021544 ACAAACTTTGTGGTTTTCTGCAGA 60.022 37.500 13.74 13.74 43.48 4.26
3043 4479 4.160252 ACTTTGTGGTTTTCTGCAGATGTT 59.840 37.500 19.04 0.00 0.00 2.71
3045 4481 3.286353 TGTGGTTTTCTGCAGATGTTGA 58.714 40.909 19.04 0.00 0.00 3.18
3098 4534 0.823769 TCGACACTCTGACTGCAGGT 60.824 55.000 19.93 3.70 42.53 4.00
3123 4559 2.746277 CTTTGGCCCTTCGACCGG 60.746 66.667 0.00 0.00 0.00 5.28
3144 4580 3.541713 CTCCCCTACCTCTGCCGC 61.542 72.222 0.00 0.00 0.00 6.53
3183 4619 2.106166 GCTCCTGATCATCTTCATGGGT 59.894 50.000 0.00 0.00 0.00 4.51
3232 4668 6.303839 TCTATTTAGGGCTTGTTGAGTTGTT 58.696 36.000 0.00 0.00 0.00 2.83
3234 4670 1.692411 AGGGCTTGTTGAGTTGTTCC 58.308 50.000 0.00 0.00 0.00 3.62
3235 4671 0.673985 GGGCTTGTTGAGTTGTTCCC 59.326 55.000 0.00 0.00 0.00 3.97
3236 4672 1.692411 GGCTTGTTGAGTTGTTCCCT 58.308 50.000 0.00 0.00 0.00 4.20
3237 4673 1.609072 GGCTTGTTGAGTTGTTCCCTC 59.391 52.381 0.00 0.00 0.00 4.30
3238 4674 2.297701 GCTTGTTGAGTTGTTCCCTCA 58.702 47.619 0.00 0.00 37.18 3.86
3239 4675 2.291741 GCTTGTTGAGTTGTTCCCTCAG 59.708 50.000 0.00 0.00 39.91 3.35
3240 4676 1.967319 TGTTGAGTTGTTCCCTCAGC 58.033 50.000 0.00 0.00 39.91 4.26
3241 4677 1.211703 TGTTGAGTTGTTCCCTCAGCA 59.788 47.619 3.31 3.31 44.52 4.41
3242 4678 1.876156 GTTGAGTTGTTCCCTCAGCAG 59.124 52.381 0.00 0.00 39.91 4.24
3243 4679 1.423584 TGAGTTGTTCCCTCAGCAGA 58.576 50.000 0.00 0.00 34.12 4.26
3244 4680 1.768275 TGAGTTGTTCCCTCAGCAGAA 59.232 47.619 0.00 0.00 34.12 3.02
3248 4684 2.024176 TGTTCCCTCAGCAGAACCTA 57.976 50.000 3.96 0.00 41.36 3.08
3251 4687 3.274288 GTTCCCTCAGCAGAACCTATTG 58.726 50.000 0.00 0.00 37.08 1.90
3261 4697 3.507622 GCAGAACCTATTGCACTCCTTTT 59.492 43.478 0.00 0.00 40.02 2.27
3276 4712 3.541632 TCCTTTTGTTCTCTGTGGTGTC 58.458 45.455 0.00 0.00 0.00 3.67
3333 4769 7.107542 TGTTAGACCTTTGTTGTGACTTTAGT 58.892 34.615 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.873312 CGTCCATGAGATGCACCGAG 60.873 60.000 0.00 0.00 0.00 4.63
304 305 6.484977 GGGATATCATCAAGTCTGACCTTTTC 59.515 42.308 4.83 0.00 33.30 2.29
466 467 2.793232 GTCCCGAAAAGACGATATTCCG 59.207 50.000 0.00 0.00 35.09 4.30
536 537 8.391106 GCTCAAAAAGTATATCACCAACTACTG 58.609 37.037 0.00 0.00 0.00 2.74
666 667 4.277476 AGCCGATTTCATTTTGATGGGTA 58.723 39.130 0.00 0.00 0.00 3.69
694 695 4.423732 TCTTGTTGTTTCTTTGCTTCAGC 58.576 39.130 0.00 0.00 42.50 4.26
695 696 5.883661 TCTCTTGTTGTTTCTTTGCTTCAG 58.116 37.500 0.00 0.00 0.00 3.02
696 697 5.895636 TCTCTTGTTGTTTCTTTGCTTCA 57.104 34.783 0.00 0.00 0.00 3.02
697 698 6.555315 TCTTCTCTTGTTGTTTCTTTGCTTC 58.445 36.000 0.00 0.00 0.00 3.86
698 699 6.515272 TCTTCTCTTGTTGTTTCTTTGCTT 57.485 33.333 0.00 0.00 0.00 3.91
699 700 6.460676 CCATCTTCTCTTGTTGTTTCTTTGCT 60.461 38.462 0.00 0.00 0.00 3.91
700 701 5.689068 CCATCTTCTCTTGTTGTTTCTTTGC 59.311 40.000 0.00 0.00 0.00 3.68
701 702 6.694411 CACCATCTTCTCTTGTTGTTTCTTTG 59.306 38.462 0.00 0.00 0.00 2.77
702 703 6.681368 GCACCATCTTCTCTTGTTGTTTCTTT 60.681 38.462 0.00 0.00 0.00 2.52
703 704 5.221126 GCACCATCTTCTCTTGTTGTTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
704 705 4.276926 GCACCATCTTCTCTTGTTGTTTCT 59.723 41.667 0.00 0.00 0.00 2.52
705 706 4.276926 AGCACCATCTTCTCTTGTTGTTTC 59.723 41.667 0.00 0.00 0.00 2.78
706 707 4.037208 CAGCACCATCTTCTCTTGTTGTTT 59.963 41.667 0.00 0.00 0.00 2.83
707 708 3.567164 CAGCACCATCTTCTCTTGTTGTT 59.433 43.478 0.00 0.00 0.00 2.83
708 709 3.144506 CAGCACCATCTTCTCTTGTTGT 58.855 45.455 0.00 0.00 0.00 3.32
709 710 3.144506 ACAGCACCATCTTCTCTTGTTG 58.855 45.455 0.00 0.00 0.00 3.33
710 711 3.498774 ACAGCACCATCTTCTCTTGTT 57.501 42.857 0.00 0.00 0.00 2.83
711 712 3.498774 AACAGCACCATCTTCTCTTGT 57.501 42.857 0.00 0.00 0.00 3.16
712 713 4.825422 TCTAACAGCACCATCTTCTCTTG 58.175 43.478 0.00 0.00 0.00 3.02
713 714 5.489792 TTCTAACAGCACCATCTTCTCTT 57.510 39.130 0.00 0.00 0.00 2.85
714 715 5.489792 TTTCTAACAGCACCATCTTCTCT 57.510 39.130 0.00 0.00 0.00 3.10
715 716 6.749923 ATTTTCTAACAGCACCATCTTCTC 57.250 37.500 0.00 0.00 0.00 2.87
716 717 8.635765 TTTATTTTCTAACAGCACCATCTTCT 57.364 30.769 0.00 0.00 0.00 2.85
717 718 9.691362 TTTTTATTTTCTAACAGCACCATCTTC 57.309 29.630 0.00 0.00 0.00 2.87
718 719 9.696917 CTTTTTATTTTCTAACAGCACCATCTT 57.303 29.630 0.00 0.00 0.00 2.40
719 720 8.306761 CCTTTTTATTTTCTAACAGCACCATCT 58.693 33.333 0.00 0.00 0.00 2.90
720 721 7.063426 GCCTTTTTATTTTCTAACAGCACCATC 59.937 37.037 0.00 0.00 0.00 3.51
721 722 6.873605 GCCTTTTTATTTTCTAACAGCACCAT 59.126 34.615 0.00 0.00 0.00 3.55
722 723 6.041523 AGCCTTTTTATTTTCTAACAGCACCA 59.958 34.615 0.00 0.00 0.00 4.17
723 724 6.366061 CAGCCTTTTTATTTTCTAACAGCACC 59.634 38.462 0.00 0.00 0.00 5.01
724 725 7.145323 TCAGCCTTTTTATTTTCTAACAGCAC 58.855 34.615 0.00 0.00 0.00 4.40
725 726 7.283625 TCAGCCTTTTTATTTTCTAACAGCA 57.716 32.000 0.00 0.00 0.00 4.41
726 727 6.808704 CCTCAGCCTTTTTATTTTCTAACAGC 59.191 38.462 0.00 0.00 0.00 4.40
727 728 8.110860 TCCTCAGCCTTTTTATTTTCTAACAG 57.889 34.615 0.00 0.00 0.00 3.16
728 729 8.522830 CATCCTCAGCCTTTTTATTTTCTAACA 58.477 33.333 0.00 0.00 0.00 2.41
729 730 7.976175 CCATCCTCAGCCTTTTTATTTTCTAAC 59.024 37.037 0.00 0.00 0.00 2.34
730 731 7.673926 ACCATCCTCAGCCTTTTTATTTTCTAA 59.326 33.333 0.00 0.00 0.00 2.10
731 732 7.122650 CACCATCCTCAGCCTTTTTATTTTCTA 59.877 37.037 0.00 0.00 0.00 2.10
732 733 6.019108 ACCATCCTCAGCCTTTTTATTTTCT 58.981 36.000 0.00 0.00 0.00 2.52
733 734 6.101997 CACCATCCTCAGCCTTTTTATTTTC 58.898 40.000 0.00 0.00 0.00 2.29
734 735 5.569428 GCACCATCCTCAGCCTTTTTATTTT 60.569 40.000 0.00 0.00 0.00 1.82
735 736 4.081476 GCACCATCCTCAGCCTTTTTATTT 60.081 41.667 0.00 0.00 0.00 1.40
736 737 3.448660 GCACCATCCTCAGCCTTTTTATT 59.551 43.478 0.00 0.00 0.00 1.40
737 738 3.026694 GCACCATCCTCAGCCTTTTTAT 58.973 45.455 0.00 0.00 0.00 1.40
738 739 2.446435 GCACCATCCTCAGCCTTTTTA 58.554 47.619 0.00 0.00 0.00 1.52
739 740 1.260544 GCACCATCCTCAGCCTTTTT 58.739 50.000 0.00 0.00 0.00 1.94
740 741 0.613012 GGCACCATCCTCAGCCTTTT 60.613 55.000 0.00 0.00 43.70 2.27
741 742 1.000396 GGCACCATCCTCAGCCTTT 60.000 57.895 0.00 0.00 43.70 3.11
742 743 2.679716 GGCACCATCCTCAGCCTT 59.320 61.111 0.00 0.00 43.70 4.35
743 744 3.790437 CGGCACCATCCTCAGCCT 61.790 66.667 0.00 0.00 44.85 4.58
744 745 3.628646 AACGGCACCATCCTCAGCC 62.629 63.158 0.00 0.00 43.61 4.85
745 746 2.045926 AACGGCACCATCCTCAGC 60.046 61.111 0.00 0.00 0.00 4.26
746 747 1.003355 ACAACGGCACCATCCTCAG 60.003 57.895 0.00 0.00 0.00 3.35
747 748 1.003839 GACAACGGCACCATCCTCA 60.004 57.895 0.00 0.00 0.00 3.86
748 749 1.003839 TGACAACGGCACCATCCTC 60.004 57.895 0.00 0.00 0.00 3.71
749 750 1.302511 GTGACAACGGCACCATCCT 60.303 57.895 0.00 0.00 0.00 3.24
750 751 0.036765 TAGTGACAACGGCACCATCC 60.037 55.000 0.00 0.00 36.95 3.51
751 752 1.803334 TTAGTGACAACGGCACCATC 58.197 50.000 0.00 0.00 36.95 3.51
752 753 2.264005 TTTAGTGACAACGGCACCAT 57.736 45.000 0.00 0.00 36.95 3.55
753 754 2.039818 TTTTAGTGACAACGGCACCA 57.960 45.000 0.00 0.00 36.95 4.17
770 771 4.100035 CCCCTGAAAGCAGAGAAAGTTTTT 59.900 41.667 0.00 0.00 45.17 1.94
771 772 3.638627 CCCCTGAAAGCAGAGAAAGTTTT 59.361 43.478 0.00 0.00 45.17 2.43
772 773 3.225940 CCCCTGAAAGCAGAGAAAGTTT 58.774 45.455 0.00 0.00 45.17 2.66
773 774 2.175715 ACCCCTGAAAGCAGAGAAAGTT 59.824 45.455 0.00 0.00 45.17 2.66
774 775 1.777272 ACCCCTGAAAGCAGAGAAAGT 59.223 47.619 0.00 0.00 45.17 2.66
775 776 2.575805 ACCCCTGAAAGCAGAGAAAG 57.424 50.000 0.00 0.00 45.17 2.62
776 777 3.008049 GTCTACCCCTGAAAGCAGAGAAA 59.992 47.826 0.00 0.00 45.17 2.52
777 778 2.567615 GTCTACCCCTGAAAGCAGAGAA 59.432 50.000 0.00 0.00 45.17 2.87
778 779 2.180276 GTCTACCCCTGAAAGCAGAGA 58.820 52.381 0.00 0.00 45.17 3.10
779 780 1.902508 TGTCTACCCCTGAAAGCAGAG 59.097 52.381 0.00 0.00 45.17 3.35
780 781 1.623811 GTGTCTACCCCTGAAAGCAGA 59.376 52.381 0.00 0.00 45.17 4.26
781 782 1.339151 GGTGTCTACCCCTGAAAGCAG 60.339 57.143 0.00 0.00 41.36 4.24
782 783 0.690762 GGTGTCTACCCCTGAAAGCA 59.309 55.000 0.00 0.00 41.36 3.91
783 784 3.553109 GGTGTCTACCCCTGAAAGC 57.447 57.895 0.00 0.00 41.36 3.51
792 793 3.194116 TCAACTTGATACGGGTGTCTACC 59.806 47.826 0.00 0.00 46.76 3.18
793 794 4.445452 TCAACTTGATACGGGTGTCTAC 57.555 45.455 0.00 0.00 0.00 2.59
794 795 4.464951 ACATCAACTTGATACGGGTGTCTA 59.535 41.667 3.88 0.00 34.28 2.59
795 796 3.260884 ACATCAACTTGATACGGGTGTCT 59.739 43.478 3.88 0.00 34.28 3.41
796 797 3.596214 ACATCAACTTGATACGGGTGTC 58.404 45.455 3.88 0.00 34.28 3.67
797 798 3.007506 TGACATCAACTTGATACGGGTGT 59.992 43.478 3.88 0.00 34.28 4.16
798 799 3.595173 TGACATCAACTTGATACGGGTG 58.405 45.455 3.88 0.00 34.28 4.61
799 800 3.973206 TGACATCAACTTGATACGGGT 57.027 42.857 3.88 0.00 34.28 5.28
800 801 4.697514 AGATGACATCAACTTGATACGGG 58.302 43.478 17.57 0.00 34.28 5.28
801 802 5.351458 TGAGATGACATCAACTTGATACGG 58.649 41.667 17.57 0.00 34.28 4.02
802 803 6.020041 CACTGAGATGACATCAACTTGATACG 60.020 42.308 17.57 0.00 34.28 3.06
803 804 6.238049 GCACTGAGATGACATCAACTTGATAC 60.238 42.308 17.57 3.26 34.28 2.24
804 805 5.814188 GCACTGAGATGACATCAACTTGATA 59.186 40.000 17.57 0.00 34.28 2.15
805 806 4.634883 GCACTGAGATGACATCAACTTGAT 59.365 41.667 17.57 0.00 37.65 2.57
806 807 3.999001 GCACTGAGATGACATCAACTTGA 59.001 43.478 17.57 0.00 0.00 3.02
807 808 4.001652 AGCACTGAGATGACATCAACTTG 58.998 43.478 17.57 9.77 0.00 3.16
808 809 4.001652 CAGCACTGAGATGACATCAACTT 58.998 43.478 17.57 0.00 35.00 2.66
809 810 3.260128 TCAGCACTGAGATGACATCAACT 59.740 43.478 17.57 0.00 37.82 3.16
810 811 3.593096 TCAGCACTGAGATGACATCAAC 58.407 45.455 17.57 11.08 37.82 3.18
811 812 3.967332 TCAGCACTGAGATGACATCAA 57.033 42.857 17.57 4.62 37.82 2.57
822 823 3.128375 TGCGACACTCAGCACTGA 58.872 55.556 0.00 0.00 38.59 3.41
826 827 1.949133 GTTCGTGCGACACTCAGCA 60.949 57.895 8.07 0.00 41.55 4.41
827 828 2.846918 GTTCGTGCGACACTCAGC 59.153 61.111 8.07 0.00 31.34 4.26
828 829 2.365068 CCGTTCGTGCGACACTCAG 61.365 63.158 8.07 0.00 31.34 3.35
829 830 2.354188 CCGTTCGTGCGACACTCA 60.354 61.111 8.07 0.00 31.34 3.41
830 831 2.050714 TCCGTTCGTGCGACACTC 60.051 61.111 8.07 0.00 31.34 3.51
831 832 2.354305 GTCCGTTCGTGCGACACT 60.354 61.111 8.07 0.00 31.34 3.55
832 833 2.656007 TGTCCGTTCGTGCGACAC 60.656 61.111 0.00 0.00 0.00 3.67
833 834 2.656007 GTGTCCGTTCGTGCGACA 60.656 61.111 0.00 0.00 0.00 4.35
834 835 3.749373 CGTGTCCGTTCGTGCGAC 61.749 66.667 0.00 0.00 0.00 5.19
835 836 4.986587 CCGTGTCCGTTCGTGCGA 62.987 66.667 3.26 0.00 0.00 5.10
840 841 4.789075 ATCCGCCGTGTCCGTTCG 62.789 66.667 0.00 0.00 0.00 3.95
841 842 3.186047 CATCCGCCGTGTCCGTTC 61.186 66.667 0.00 0.00 0.00 3.95
842 843 3.524648 AACATCCGCCGTGTCCGTT 62.525 57.895 0.00 0.00 0.00 4.44
843 844 3.927163 GAACATCCGCCGTGTCCGT 62.927 63.158 0.00 0.00 0.00 4.69
844 845 3.186047 GAACATCCGCCGTGTCCG 61.186 66.667 0.00 0.00 0.00 4.79
845 846 3.186047 CGAACATCCGCCGTGTCC 61.186 66.667 0.00 0.00 0.00 4.02
853 854 1.273887 GATTGCTCGCGAACATCCG 59.726 57.895 13.69 0.00 0.00 4.18
854 855 1.643832 GGATTGCTCGCGAACATCC 59.356 57.895 13.69 17.29 0.00 3.51
855 856 1.273887 CGGATTGCTCGCGAACATC 59.726 57.895 13.69 12.43 0.00 3.06
856 857 2.813179 GCGGATTGCTCGCGAACAT 61.813 57.895 13.69 3.41 43.71 2.71
857 858 3.487202 GCGGATTGCTCGCGAACA 61.487 61.111 11.33 9.78 43.71 3.18
863 864 1.226018 GGAAAACGCGGATTGCTCG 60.226 57.895 12.47 0.00 43.27 5.03
864 865 0.451783 ATGGAAAACGCGGATTGCTC 59.548 50.000 12.47 0.53 43.27 4.26
865 866 1.745232 TATGGAAAACGCGGATTGCT 58.255 45.000 12.47 3.36 43.27 3.91
866 867 2.553079 TTATGGAAAACGCGGATTGC 57.447 45.000 12.47 10.96 41.47 3.56
867 868 7.858382 TGTTTATATTATGGAAAACGCGGATTG 59.142 33.333 12.47 0.00 35.16 2.67
868 869 7.932335 TGTTTATATTATGGAAAACGCGGATT 58.068 30.769 12.47 4.36 35.16 3.01
869 870 7.499321 TGTTTATATTATGGAAAACGCGGAT 57.501 32.000 12.47 0.00 35.16 4.18
870 871 6.922247 TGTTTATATTATGGAAAACGCGGA 57.078 33.333 12.47 0.00 35.16 5.54
871 872 7.581476 AGATGTTTATATTATGGAAAACGCGG 58.419 34.615 12.47 0.00 35.16 6.46
872 873 7.744715 GGAGATGTTTATATTATGGAAAACGCG 59.255 37.037 3.53 3.53 35.16 6.01
873 874 8.564574 TGGAGATGTTTATATTATGGAAAACGC 58.435 33.333 0.00 0.00 35.16 4.84
898 899 3.932089 TCACATGTAACGGTGACATCATG 59.068 43.478 8.20 9.92 39.00 3.07
933 934 5.119588 TGCTACTACACATAACAGAAAACGC 59.880 40.000 0.00 0.00 0.00 4.84
940 941 7.416022 GGTACTACTGCTACTACACATAACAG 58.584 42.308 0.00 0.00 0.00 3.16
941 942 6.319658 GGGTACTACTGCTACTACACATAACA 59.680 42.308 0.00 0.00 0.00 2.41
947 948 5.649782 TTTGGGTACTACTGCTACTACAC 57.350 43.478 0.00 0.00 0.00 2.90
952 953 4.748277 TGGATTTGGGTACTACTGCTAC 57.252 45.455 0.00 0.00 0.00 3.58
953 954 5.665812 AGATTGGATTTGGGTACTACTGCTA 59.334 40.000 0.00 0.00 0.00 3.49
954 955 4.475016 AGATTGGATTTGGGTACTACTGCT 59.525 41.667 0.00 0.00 0.00 4.24
955 956 4.576463 CAGATTGGATTTGGGTACTACTGC 59.424 45.833 0.00 0.00 0.00 4.40
956 957 4.576463 GCAGATTGGATTTGGGTACTACTG 59.424 45.833 0.00 0.00 0.00 2.74
957 958 4.227300 TGCAGATTGGATTTGGGTACTACT 59.773 41.667 0.00 0.00 0.00 2.57
958 959 4.523083 TGCAGATTGGATTTGGGTACTAC 58.477 43.478 0.00 0.00 0.00 2.73
959 960 4.853468 TGCAGATTGGATTTGGGTACTA 57.147 40.909 0.00 0.00 0.00 1.82
960 961 3.737559 TGCAGATTGGATTTGGGTACT 57.262 42.857 0.00 0.00 0.00 2.73
961 962 3.319122 GGATGCAGATTGGATTTGGGTAC 59.681 47.826 0.00 0.00 0.00 3.34
962 963 3.205056 AGGATGCAGATTGGATTTGGGTA 59.795 43.478 0.00 0.00 0.00 3.69
963 964 2.023695 AGGATGCAGATTGGATTTGGGT 60.024 45.455 0.00 0.00 0.00 4.51
964 965 2.626743 GAGGATGCAGATTGGATTTGGG 59.373 50.000 0.00 0.00 0.00 4.12
965 966 2.626743 GGAGGATGCAGATTGGATTTGG 59.373 50.000 0.00 0.00 0.00 3.28
966 967 2.292569 CGGAGGATGCAGATTGGATTTG 59.707 50.000 0.00 0.00 0.00 2.32
1008 1012 3.849951 GAGGAGGCGCGGATGGAA 61.850 66.667 8.83 0.00 0.00 3.53
1112 1116 3.723348 GCGGTGGTGGCGTTCTTC 61.723 66.667 0.00 0.00 0.00 2.87
1691 1981 3.153919 GGGGTTCTTGTCAAGCACATTA 58.846 45.455 15.79 0.00 33.90 1.90
1826 2122 3.485463 ACCTCTTTGAAACGGACATCA 57.515 42.857 0.00 0.00 0.00 3.07
2212 2529 3.110358 CCAATCATGCATGCGTGTTTAG 58.890 45.455 33.08 22.45 34.75 1.85
2572 3994 8.287503 GGGTCAAAGTTTATAATTAGCATACCG 58.712 37.037 0.00 0.00 0.00 4.02
2994 4430 2.992114 AGCGTCAGAAGACCGCCT 60.992 61.111 0.00 0.00 41.74 5.52
3008 4444 4.287238 ACCACAAAGTTTGTAAAGAGCG 57.713 40.909 20.47 6.93 43.23 5.03
3027 4463 3.311966 GCTTCAACATCTGCAGAAAACC 58.688 45.455 22.50 0.48 0.00 3.27
3039 4475 0.322456 TGGCTAAGCGGCTTCAACAT 60.322 50.000 20.06 0.00 39.32 2.71
3043 4479 0.035534 TTCATGGCTAAGCGGCTTCA 60.036 50.000 20.06 11.73 39.32 3.02
3045 4481 1.406539 CAATTCATGGCTAAGCGGCTT 59.593 47.619 20.32 20.32 39.32 4.35
3080 4516 0.387878 GACCTGCAGTCAGAGTGTCG 60.388 60.000 13.81 0.00 45.55 4.35
3123 4559 3.541713 CAGAGGTAGGGGAGGCGC 61.542 72.222 0.00 0.00 0.00 6.53
3232 4668 1.210478 GCAATAGGTTCTGCTGAGGGA 59.790 52.381 0.00 0.00 35.62 4.20
3234 4670 2.012673 GTGCAATAGGTTCTGCTGAGG 58.987 52.381 0.00 0.00 39.38 3.86
3235 4671 2.935201 GAGTGCAATAGGTTCTGCTGAG 59.065 50.000 0.00 0.00 39.38 3.35
3236 4672 2.355108 GGAGTGCAATAGGTTCTGCTGA 60.355 50.000 0.00 0.00 39.38 4.26
3237 4673 2.012673 GGAGTGCAATAGGTTCTGCTG 58.987 52.381 0.00 0.00 39.38 4.41
3238 4674 1.912043 AGGAGTGCAATAGGTTCTGCT 59.088 47.619 0.00 0.00 39.38 4.24
3239 4675 2.409948 AGGAGTGCAATAGGTTCTGC 57.590 50.000 0.00 0.00 39.09 4.26
3240 4676 4.520492 ACAAAAGGAGTGCAATAGGTTCTG 59.480 41.667 0.00 0.00 0.00 3.02
3241 4677 4.729868 ACAAAAGGAGTGCAATAGGTTCT 58.270 39.130 0.00 0.00 0.00 3.01
3242 4678 5.241728 AGAACAAAAGGAGTGCAATAGGTTC 59.758 40.000 0.00 0.00 33.11 3.62
3243 4679 5.140454 AGAACAAAAGGAGTGCAATAGGTT 58.860 37.500 0.00 0.00 0.00 3.50
3244 4680 4.729868 AGAACAAAAGGAGTGCAATAGGT 58.270 39.130 0.00 0.00 0.00 3.08
3248 4684 4.037208 CACAGAGAACAAAAGGAGTGCAAT 59.963 41.667 0.00 0.00 0.00 3.56
3251 4687 2.291741 CCACAGAGAACAAAAGGAGTGC 59.708 50.000 0.00 0.00 0.00 4.40
3261 4697 3.627395 AACAAGACACCACAGAGAACA 57.373 42.857 0.00 0.00 0.00 3.18
3276 4712 7.149367 GCAAACGAAAGAAAAACACAAAACAAG 60.149 33.333 0.00 0.00 0.00 3.16
3333 4769 6.412362 ACCACTTTATAAATGCAACAACCA 57.588 33.333 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.