Multiple sequence alignment - TraesCS4B01G283300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G283300 chr4B 100.000 5982 0 0 1 5982 566602901 566596920 0.000000e+00 11047.0
1 TraesCS4B01G283300 chr4D 92.061 3212 107 41 1686 4809 453226543 453223392 0.000000e+00 4383.0
2 TraesCS4B01G283300 chr4D 90.229 1351 62 27 4672 5982 453223389 453222069 0.000000e+00 1700.0
3 TraesCS4B01G283300 chr4D 94.507 892 41 6 580 1464 453227708 453226818 0.000000e+00 1369.0
4 TraesCS4B01G283300 chr4D 87.097 341 34 8 239 575 453228079 453227745 1.570000e-100 377.0
5 TraesCS4B01G283300 chr4D 87.879 132 12 2 1460 1587 453226789 453226658 1.040000e-32 152.0
6 TraesCS4B01G283300 chr4D 74.909 275 46 21 31 292 337256217 337256481 2.950000e-18 104.0
7 TraesCS4B01G283300 chr4D 91.549 71 4 2 1592 1660 453226611 453226541 4.930000e-16 97.1
8 TraesCS4B01G283300 chr4A 89.766 2306 114 52 2558 4806 14022289 14024529 0.000000e+00 2839.0
9 TraesCS4B01G283300 chr4A 91.190 1067 54 26 4939 5982 14025025 14026074 0.000000e+00 1413.0
10 TraesCS4B01G283300 chr4A 93.960 894 42 8 580 1464 14020167 14021057 0.000000e+00 1341.0
11 TraesCS4B01G283300 chr4A 84.000 1000 94 32 1586 2547 14021247 14022218 0.000000e+00 900.0
12 TraesCS4B01G283300 chr4A 86.000 150 16 3 1460 1604 14021086 14021235 8.030000e-34 156.0
13 TraesCS4B01G283300 chr3D 79.661 295 33 13 908 1198 611562855 611563126 2.850000e-43 187.0
14 TraesCS4B01G283300 chr2A 77.778 270 49 9 28 291 176557118 176557382 8.030000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G283300 chr4B 566596920 566602901 5981 True 11047.00 11047 100.000000 1 5982 1 chr4B.!!$R1 5981
1 TraesCS4B01G283300 chr4D 453222069 453228079 6010 True 1346.35 4383 90.553667 239 5982 6 chr4D.!!$R1 5743
2 TraesCS4B01G283300 chr4A 14020167 14026074 5907 False 1329.80 2839 88.983200 580 5982 5 chr4A.!!$F1 5402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036388 AACATGACACTACCTGGCCG 60.036 55.000 0.00 0.00 0.00 6.13 F
173 174 0.108424 GCCACTTGTCTCGCTCTGAT 60.108 55.000 0.00 0.00 0.00 2.90 F
178 179 0.391661 TTGTCTCGCTCTGATTGGGC 60.392 55.000 0.00 0.00 0.00 5.36 F
229 230 0.473755 TGAGAATGGTGTGGTGCACT 59.526 50.000 17.98 0.00 46.86 4.40 F
345 348 1.072648 ACCCCCGTTGATCGAAAAAGA 59.927 47.619 0.00 0.00 42.86 2.52 F
2153 2318 1.412710 TCCACTCTGACACCTCAACAC 59.587 52.381 0.00 0.00 0.00 3.32 F
2160 2325 1.948834 TGACACCTCAACACTGCATTG 59.051 47.619 1.95 1.95 0.00 2.82 F
2409 2575 5.239087 CCCTGCTTTAACACAATGCATTTTT 59.761 36.000 9.83 6.09 33.02 1.94 F
4186 4485 1.352352 CAAGAGGTTCCACATGAGGGT 59.648 52.381 9.48 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1568 1.106285 GCACTTGCCCCTAAAGATGG 58.894 55.000 0.00 0.0 34.31 3.51 R
2071 2231 1.227102 CAGATGAAATGGGCGGGGA 59.773 57.895 0.00 0.0 0.00 4.81 R
2074 2234 1.679139 TAAGCAGATGAAATGGGCGG 58.321 50.000 0.00 0.0 0.00 6.13 R
2188 2353 6.640518 ACAAGTGTACCTTATCACCATACAG 58.359 40.000 0.00 0.0 35.45 2.74 R
2233 2398 5.388944 TGCAAAACAAAGAAAATGCAACAC 58.611 33.333 0.00 0.0 40.47 3.32 R
2985 3244 1.965935 TTTCTAGCACAGCTGCAACA 58.034 45.000 15.27 0.0 46.97 3.33 R
3624 3887 2.101917 GGCATGAAACATAAGGCTGCAT 59.898 45.455 0.50 0.0 0.00 3.96 R
4255 4554 0.251341 CCTGCCCAAAAGTGTAGCCT 60.251 55.000 0.00 0.0 0.00 4.58 R
5681 6373 0.259647 CATGAAAGGGAGGGGCATCA 59.740 55.000 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.453155 CCAACATGACACTACCTGGC 58.547 55.000 0.00 0.00 0.00 4.85
20 21 1.453155 CAACATGACACTACCTGGCC 58.547 55.000 0.00 0.00 0.00 5.36
21 22 0.036388 AACATGACACTACCTGGCCG 60.036 55.000 0.00 0.00 0.00 6.13
22 23 1.815421 CATGACACTACCTGGCCGC 60.815 63.158 0.00 0.00 0.00 6.53
23 24 3.031417 ATGACACTACCTGGCCGCC 62.031 63.158 1.04 1.04 0.00 6.13
24 25 4.468689 GACACTACCTGGCCGCCC 62.469 72.222 7.03 0.00 0.00 6.13
26 27 3.717294 CACTACCTGGCCGCCCTT 61.717 66.667 7.03 0.00 0.00 3.95
27 28 3.717294 ACTACCTGGCCGCCCTTG 61.717 66.667 7.03 0.00 0.00 3.61
28 29 3.399181 CTACCTGGCCGCCCTTGA 61.399 66.667 7.03 0.00 0.00 3.02
29 30 2.931105 TACCTGGCCGCCCTTGAA 60.931 61.111 7.03 0.00 0.00 2.69
30 31 3.262448 TACCTGGCCGCCCTTGAAC 62.262 63.158 7.03 0.00 0.00 3.18
32 33 4.697756 CTGGCCGCCCTTGAACGA 62.698 66.667 7.03 0.00 0.00 3.85
33 34 4.257654 TGGCCGCCCTTGAACGAA 62.258 61.111 7.03 0.00 0.00 3.85
34 35 3.733960 GGCCGCCCTTGAACGAAC 61.734 66.667 0.00 0.00 0.00 3.95
35 36 4.084888 GCCGCCCTTGAACGAACG 62.085 66.667 0.00 0.00 0.00 3.95
36 37 2.356553 CCGCCCTTGAACGAACGA 60.357 61.111 0.14 0.00 0.00 3.85
37 38 1.957186 CCGCCCTTGAACGAACGAA 60.957 57.895 0.14 0.00 0.00 3.85
38 39 1.296056 CCGCCCTTGAACGAACGAAT 61.296 55.000 0.14 0.00 0.00 3.34
39 40 0.179225 CGCCCTTGAACGAACGAATG 60.179 55.000 0.14 0.00 0.00 2.67
40 41 0.454452 GCCCTTGAACGAACGAATGC 60.454 55.000 0.14 0.00 0.00 3.56
41 42 0.179225 CCCTTGAACGAACGAATGCG 60.179 55.000 0.14 0.00 44.79 4.73
42 43 0.787787 CCTTGAACGAACGAATGCGA 59.212 50.000 0.00 0.00 41.64 5.10
43 44 1.193650 CCTTGAACGAACGAATGCGAA 59.806 47.619 0.00 0.00 41.64 4.70
44 45 2.222624 CTTGAACGAACGAATGCGAAC 58.777 47.619 0.00 0.00 41.64 3.95
45 46 1.209998 TGAACGAACGAATGCGAACA 58.790 45.000 0.00 0.00 41.64 3.18
46 47 1.593469 TGAACGAACGAATGCGAACAA 59.407 42.857 0.00 0.00 41.64 2.83
47 48 2.030579 TGAACGAACGAATGCGAACAAA 59.969 40.909 0.00 0.00 41.64 2.83
48 49 2.961522 ACGAACGAATGCGAACAAAT 57.038 40.000 0.00 0.00 41.64 2.32
49 50 4.084485 TGAACGAACGAATGCGAACAAATA 60.084 37.500 0.00 0.00 41.64 1.40
50 51 3.728600 ACGAACGAATGCGAACAAATAC 58.271 40.909 0.00 0.00 41.64 1.89
51 52 3.430895 ACGAACGAATGCGAACAAATACT 59.569 39.130 0.00 0.00 41.64 2.12
52 53 3.773549 CGAACGAATGCGAACAAATACTG 59.226 43.478 0.00 0.00 41.64 2.74
53 54 4.433674 CGAACGAATGCGAACAAATACTGA 60.434 41.667 0.00 0.00 41.64 3.41
54 55 4.584029 ACGAATGCGAACAAATACTGAG 57.416 40.909 0.00 0.00 41.64 3.35
55 56 4.242475 ACGAATGCGAACAAATACTGAGA 58.758 39.130 0.00 0.00 41.64 3.27
56 57 4.091509 ACGAATGCGAACAAATACTGAGAC 59.908 41.667 0.00 0.00 41.64 3.36
57 58 4.091365 CGAATGCGAACAAATACTGAGACA 59.909 41.667 0.00 0.00 40.82 3.41
58 59 5.389411 CGAATGCGAACAAATACTGAGACAA 60.389 40.000 0.00 0.00 40.82 3.18
59 60 5.940192 ATGCGAACAAATACTGAGACAAA 57.060 34.783 0.00 0.00 0.00 2.83
60 61 5.940192 TGCGAACAAATACTGAGACAAAT 57.060 34.783 0.00 0.00 0.00 2.32
61 62 6.312399 TGCGAACAAATACTGAGACAAATT 57.688 33.333 0.00 0.00 0.00 1.82
62 63 6.734137 TGCGAACAAATACTGAGACAAATTT 58.266 32.000 0.00 0.00 0.00 1.82
63 64 7.866729 TGCGAACAAATACTGAGACAAATTTA 58.133 30.769 0.00 0.00 0.00 1.40
64 65 8.346300 TGCGAACAAATACTGAGACAAATTTAA 58.654 29.630 0.00 0.00 0.00 1.52
65 66 9.341899 GCGAACAAATACTGAGACAAATTTAAT 57.658 29.630 0.00 0.00 0.00 1.40
73 74 7.454260 ACTGAGACAAATTTAATTCAGGTCC 57.546 36.000 20.19 6.87 37.08 4.46
74 75 7.004086 ACTGAGACAAATTTAATTCAGGTCCA 58.996 34.615 20.19 9.69 37.08 4.02
75 76 7.175641 ACTGAGACAAATTTAATTCAGGTCCAG 59.824 37.037 20.19 18.97 37.08 3.86
76 77 7.004086 TGAGACAAATTTAATTCAGGTCCAGT 58.996 34.615 11.02 0.00 0.00 4.00
77 78 7.040478 TGAGACAAATTTAATTCAGGTCCAGTG 60.040 37.037 11.02 0.00 0.00 3.66
78 79 6.777580 AGACAAATTTAATTCAGGTCCAGTGT 59.222 34.615 11.02 1.29 0.00 3.55
79 80 7.942341 AGACAAATTTAATTCAGGTCCAGTGTA 59.058 33.333 11.02 0.00 0.00 2.90
80 81 8.650143 ACAAATTTAATTCAGGTCCAGTGTAT 57.350 30.769 0.00 0.00 0.00 2.29
81 82 9.088987 ACAAATTTAATTCAGGTCCAGTGTATT 57.911 29.630 0.00 0.00 0.00 1.89
82 83 9.357652 CAAATTTAATTCAGGTCCAGTGTATTG 57.642 33.333 0.00 0.00 0.00 1.90
83 84 6.509418 TTTAATTCAGGTCCAGTGTATTGC 57.491 37.500 0.00 0.00 0.00 3.56
84 85 2.093306 TTCAGGTCCAGTGTATTGCG 57.907 50.000 0.00 0.00 0.00 4.85
85 86 1.262417 TCAGGTCCAGTGTATTGCGA 58.738 50.000 0.00 0.00 0.00 5.10
86 87 1.067142 TCAGGTCCAGTGTATTGCGAC 60.067 52.381 0.00 0.00 0.00 5.19
87 88 1.066858 CAGGTCCAGTGTATTGCGACT 60.067 52.381 0.00 0.00 0.00 4.18
88 89 1.623811 AGGTCCAGTGTATTGCGACTT 59.376 47.619 0.00 0.00 0.00 3.01
89 90 1.732259 GGTCCAGTGTATTGCGACTTG 59.268 52.381 0.00 0.00 0.00 3.16
90 91 2.611971 GGTCCAGTGTATTGCGACTTGA 60.612 50.000 0.00 0.00 0.00 3.02
91 92 3.064207 GTCCAGTGTATTGCGACTTGAA 58.936 45.455 0.00 0.00 0.00 2.69
92 93 3.684788 GTCCAGTGTATTGCGACTTGAAT 59.315 43.478 0.00 0.00 0.00 2.57
93 94 4.154195 GTCCAGTGTATTGCGACTTGAATT 59.846 41.667 0.00 0.00 0.00 2.17
94 95 4.391830 TCCAGTGTATTGCGACTTGAATTC 59.608 41.667 0.00 0.00 0.00 2.17
95 96 4.154015 CCAGTGTATTGCGACTTGAATTCA 59.846 41.667 3.38 3.38 0.00 2.57
96 97 5.319139 CAGTGTATTGCGACTTGAATTCAG 58.681 41.667 8.41 5.87 0.00 3.02
97 98 5.120674 CAGTGTATTGCGACTTGAATTCAGA 59.879 40.000 8.41 0.00 0.00 3.27
98 99 5.700832 AGTGTATTGCGACTTGAATTCAGAA 59.299 36.000 8.41 0.00 0.00 3.02
99 100 6.204688 AGTGTATTGCGACTTGAATTCAGAAA 59.795 34.615 8.41 0.00 0.00 2.52
100 101 6.855914 GTGTATTGCGACTTGAATTCAGAAAA 59.144 34.615 8.41 0.18 0.00 2.29
101 102 7.378461 GTGTATTGCGACTTGAATTCAGAAAAA 59.622 33.333 8.41 1.18 0.00 1.94
102 103 6.998258 ATTGCGACTTGAATTCAGAAAAAG 57.002 33.333 8.41 5.43 0.00 2.27
103 104 4.858935 TGCGACTTGAATTCAGAAAAAGG 58.141 39.130 8.41 0.00 0.00 3.11
104 105 3.670523 GCGACTTGAATTCAGAAAAAGGC 59.329 43.478 8.41 4.07 0.00 4.35
105 106 4.792704 GCGACTTGAATTCAGAAAAAGGCA 60.793 41.667 8.41 0.00 0.00 4.75
106 107 5.280945 CGACTTGAATTCAGAAAAAGGCAA 58.719 37.500 8.41 0.00 0.00 4.52
107 108 5.400485 CGACTTGAATTCAGAAAAAGGCAAG 59.600 40.000 8.41 0.00 37.92 4.01
108 109 5.604565 ACTTGAATTCAGAAAAAGGCAAGG 58.395 37.500 8.41 0.00 36.67 3.61
109 110 4.605640 TGAATTCAGAAAAAGGCAAGGG 57.394 40.909 3.38 0.00 0.00 3.95
110 111 3.966665 TGAATTCAGAAAAAGGCAAGGGT 59.033 39.130 3.38 0.00 0.00 4.34
111 112 4.408596 TGAATTCAGAAAAAGGCAAGGGTT 59.591 37.500 3.38 0.00 0.00 4.11
112 113 5.600484 TGAATTCAGAAAAAGGCAAGGGTTA 59.400 36.000 3.38 0.00 0.00 2.85
113 114 6.269769 TGAATTCAGAAAAAGGCAAGGGTTAT 59.730 34.615 3.38 0.00 0.00 1.89
114 115 5.467035 TTCAGAAAAAGGCAAGGGTTATG 57.533 39.130 0.00 0.00 0.00 1.90
115 116 4.479158 TCAGAAAAAGGCAAGGGTTATGT 58.521 39.130 0.00 0.00 0.00 2.29
116 117 4.280677 TCAGAAAAAGGCAAGGGTTATGTG 59.719 41.667 0.00 0.00 0.00 3.21
117 118 3.006859 AGAAAAAGGCAAGGGTTATGTGC 59.993 43.478 0.00 0.00 37.55 4.57
118 119 2.008242 AAAGGCAAGGGTTATGTGCA 57.992 45.000 0.00 0.00 40.12 4.57
119 120 2.008242 AAGGCAAGGGTTATGTGCAA 57.992 45.000 0.00 0.00 40.12 4.08
120 121 2.008242 AGGCAAGGGTTATGTGCAAA 57.992 45.000 0.00 0.00 40.12 3.68
121 122 2.324541 AGGCAAGGGTTATGTGCAAAA 58.675 42.857 0.00 0.00 40.12 2.44
122 123 2.299867 AGGCAAGGGTTATGTGCAAAAG 59.700 45.455 0.00 0.00 40.12 2.27
123 124 2.037121 GGCAAGGGTTATGTGCAAAAGT 59.963 45.455 0.00 0.00 40.12 2.66
124 125 3.059166 GCAAGGGTTATGTGCAAAAGTG 58.941 45.455 0.00 0.00 38.19 3.16
137 138 1.391485 CAAAAGTGCAGAGGACGATCG 59.609 52.381 14.88 14.88 0.00 3.69
138 139 0.108615 AAAGTGCAGAGGACGATCGG 60.109 55.000 20.98 0.82 0.00 4.18
139 140 2.564553 AAGTGCAGAGGACGATCGGC 62.565 60.000 20.98 17.86 40.32 5.54
140 141 2.755876 TGCAGAGGACGATCGGCT 60.756 61.111 22.46 6.79 40.52 5.52
141 142 2.026879 GCAGAGGACGATCGGCTC 59.973 66.667 22.46 15.88 37.41 4.70
150 151 4.094684 GATCGGCTCGACCACTTG 57.905 61.111 0.00 0.00 39.18 3.16
151 152 1.519455 GATCGGCTCGACCACTTGG 60.519 63.158 0.00 0.00 39.18 3.61
152 153 2.907897 GATCGGCTCGACCACTTGGG 62.908 65.000 0.00 0.00 39.18 4.12
159 160 4.643387 GACCACTTGGGCGCCACT 62.643 66.667 30.85 3.28 42.05 4.00
160 161 4.204028 ACCACTTGGGCGCCACTT 62.204 61.111 30.85 5.94 42.05 3.16
161 162 3.673484 CCACTTGGGCGCCACTTG 61.673 66.667 30.85 18.38 30.78 3.16
162 163 2.906897 CACTTGGGCGCCACTTGT 60.907 61.111 30.85 17.74 30.78 3.16
163 164 2.594592 ACTTGGGCGCCACTTGTC 60.595 61.111 30.85 10.31 30.78 3.18
164 165 2.281761 CTTGGGCGCCACTTGTCT 60.282 61.111 30.85 0.00 30.78 3.41
165 166 2.281484 TTGGGCGCCACTTGTCTC 60.281 61.111 30.85 8.62 30.78 3.36
166 167 4.680237 TGGGCGCCACTTGTCTCG 62.680 66.667 30.85 0.00 0.00 4.04
169 170 3.482783 GCGCCACTTGTCTCGCTC 61.483 66.667 0.00 0.00 43.70 5.03
170 171 2.259818 CGCCACTTGTCTCGCTCT 59.740 61.111 0.00 0.00 0.00 4.09
171 172 2.091112 CGCCACTTGTCTCGCTCTG 61.091 63.158 0.00 0.00 0.00 3.35
172 173 1.290324 GCCACTTGTCTCGCTCTGA 59.710 57.895 0.00 0.00 0.00 3.27
173 174 0.108424 GCCACTTGTCTCGCTCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
174 175 1.674221 GCCACTTGTCTCGCTCTGATT 60.674 52.381 0.00 0.00 0.00 2.57
175 176 1.998315 CCACTTGTCTCGCTCTGATTG 59.002 52.381 0.00 0.00 0.00 2.67
176 177 1.998315 CACTTGTCTCGCTCTGATTGG 59.002 52.381 0.00 0.00 0.00 3.16
177 178 1.066573 ACTTGTCTCGCTCTGATTGGG 60.067 52.381 0.00 0.00 0.00 4.12
178 179 0.391661 TTGTCTCGCTCTGATTGGGC 60.392 55.000 0.00 0.00 0.00 5.36
179 180 1.260538 TGTCTCGCTCTGATTGGGCT 61.261 55.000 0.00 0.00 0.00 5.19
180 181 0.747255 GTCTCGCTCTGATTGGGCTA 59.253 55.000 0.00 0.00 0.00 3.93
181 182 1.342819 GTCTCGCTCTGATTGGGCTAT 59.657 52.381 0.00 0.00 0.00 2.97
182 183 1.342496 TCTCGCTCTGATTGGGCTATG 59.658 52.381 0.00 0.00 0.00 2.23
183 184 1.342496 CTCGCTCTGATTGGGCTATGA 59.658 52.381 0.00 0.00 0.00 2.15
184 185 1.069204 TCGCTCTGATTGGGCTATGAC 59.931 52.381 0.00 0.00 0.00 3.06
185 186 1.875576 CGCTCTGATTGGGCTATGACC 60.876 57.143 0.00 0.00 0.00 4.02
186 187 1.141657 GCTCTGATTGGGCTATGACCA 59.858 52.381 0.00 0.00 40.08 4.02
194 195 3.949586 TGGGCTATGACCAAATCATCA 57.050 42.857 0.00 0.00 45.52 3.07
195 196 3.554934 TGGGCTATGACCAAATCATCAC 58.445 45.455 0.00 0.00 45.52 3.06
196 197 3.053768 TGGGCTATGACCAAATCATCACA 60.054 43.478 0.00 0.00 45.52 3.58
197 198 4.147321 GGGCTATGACCAAATCATCACAT 58.853 43.478 0.00 0.00 45.52 3.21
198 199 4.217118 GGGCTATGACCAAATCATCACATC 59.783 45.833 0.00 0.00 45.52 3.06
199 200 5.068636 GGCTATGACCAAATCATCACATCT 58.931 41.667 0.00 0.00 45.52 2.90
200 201 6.233434 GGCTATGACCAAATCATCACATCTA 58.767 40.000 0.00 0.00 45.52 1.98
201 202 6.370994 GGCTATGACCAAATCATCACATCTAG 59.629 42.308 0.00 0.00 45.52 2.43
202 203 6.933521 GCTATGACCAAATCATCACATCTAGT 59.066 38.462 0.00 0.00 45.52 2.57
203 204 7.095313 GCTATGACCAAATCATCACATCTAGTG 60.095 40.741 0.00 0.00 45.52 2.74
204 205 4.877823 TGACCAAATCATCACATCTAGTGC 59.122 41.667 0.00 0.00 39.28 4.40
205 206 5.571251 TGACCAAATCATCACATCTAGTGCA 60.571 40.000 0.00 0.00 39.28 4.57
206 207 7.023838 TGACCAAATCATCACATCTAGTGCAA 61.024 38.462 0.00 0.00 39.28 4.08
207 208 8.752193 TGACCAAATCATCACATCTAGTGCAAG 61.752 40.741 0.00 0.00 39.28 4.01
215 216 5.929697 CACATCTAGTGCAAGTTTGAGAA 57.070 39.130 0.00 0.00 42.15 2.87
216 217 6.492007 CACATCTAGTGCAAGTTTGAGAAT 57.508 37.500 0.00 0.00 42.15 2.40
217 218 6.312487 CACATCTAGTGCAAGTTTGAGAATG 58.688 40.000 0.00 0.00 42.15 2.67
218 219 5.413833 ACATCTAGTGCAAGTTTGAGAATGG 59.586 40.000 0.00 0.00 0.00 3.16
219 220 4.973168 TCTAGTGCAAGTTTGAGAATGGT 58.027 39.130 0.00 0.00 0.00 3.55
220 221 3.996150 AGTGCAAGTTTGAGAATGGTG 57.004 42.857 0.00 0.00 0.00 4.17
221 222 3.290710 AGTGCAAGTTTGAGAATGGTGT 58.709 40.909 0.00 0.00 0.00 4.16
222 223 3.067180 AGTGCAAGTTTGAGAATGGTGTG 59.933 43.478 0.00 0.00 0.00 3.82
223 224 2.361757 TGCAAGTTTGAGAATGGTGTGG 59.638 45.455 0.00 0.00 0.00 4.17
224 225 2.362077 GCAAGTTTGAGAATGGTGTGGT 59.638 45.455 0.00 0.00 0.00 4.16
225 226 3.796504 GCAAGTTTGAGAATGGTGTGGTG 60.797 47.826 0.00 0.00 0.00 4.17
226 227 1.956477 AGTTTGAGAATGGTGTGGTGC 59.044 47.619 0.00 0.00 0.00 5.01
227 228 1.680735 GTTTGAGAATGGTGTGGTGCA 59.319 47.619 0.00 0.00 0.00 4.57
228 229 1.317613 TTGAGAATGGTGTGGTGCAC 58.682 50.000 8.80 8.80 46.97 4.57
229 230 0.473755 TGAGAATGGTGTGGTGCACT 59.526 50.000 17.98 0.00 46.86 4.40
230 231 1.133823 TGAGAATGGTGTGGTGCACTT 60.134 47.619 17.98 0.13 46.86 3.16
231 232 1.956477 GAGAATGGTGTGGTGCACTTT 59.044 47.619 17.98 0.00 46.86 2.66
232 233 2.362077 GAGAATGGTGTGGTGCACTTTT 59.638 45.455 17.98 0.00 46.86 2.27
233 234 2.101249 AGAATGGTGTGGTGCACTTTTG 59.899 45.455 17.98 0.00 46.86 2.44
254 255 6.811253 TTGCAACTATTGGACTAAATCGTT 57.189 33.333 0.00 0.00 0.00 3.85
262 263 9.314321 ACTATTGGACTAAATCGTTACATTCTG 57.686 33.333 0.00 0.00 0.00 3.02
263 264 6.978343 TTGGACTAAATCGTTACATTCTGG 57.022 37.500 0.00 0.00 0.00 3.86
267 268 6.761714 GGACTAAATCGTTACATTCTGGACAT 59.238 38.462 0.00 0.00 0.00 3.06
270 271 6.817765 AAATCGTTACATTCTGGACATGTT 57.182 33.333 0.00 0.00 36.28 2.71
275 276 6.152154 TCGTTACATTCTGGACATGTTCTAGA 59.848 38.462 5.55 6.49 39.96 2.43
276 277 6.980978 CGTTACATTCTGGACATGTTCTAGAT 59.019 38.462 5.55 0.00 41.22 1.98
277 278 7.492669 CGTTACATTCTGGACATGTTCTAGATT 59.507 37.037 5.55 3.60 41.22 2.40
279 280 7.621428 ACATTCTGGACATGTTCTAGATTTG 57.379 36.000 5.55 11.19 41.22 2.32
315 317 5.263968 TCTTCTTTCTTAGTATGGAGCCG 57.736 43.478 0.00 0.00 0.00 5.52
330 333 3.317109 CCGGAGGTTTCTACCCCC 58.683 66.667 0.00 0.00 46.28 5.40
338 341 1.648504 GTTTCTACCCCCGTTGATCG 58.351 55.000 0.00 0.00 39.52 3.69
344 347 1.530323 ACCCCCGTTGATCGAAAAAG 58.470 50.000 0.00 0.00 42.86 2.27
345 348 1.072648 ACCCCCGTTGATCGAAAAAGA 59.927 47.619 0.00 0.00 42.86 2.52
411 415 4.148891 GCACGTTGGATCGTAAAGAAAAG 58.851 43.478 0.00 0.00 42.27 2.27
413 417 4.449743 CACGTTGGATCGTAAAGAAAAGGA 59.550 41.667 0.00 0.00 42.27 3.36
543 547 9.449719 AGAGATTAAAATTACATGTTTCCGACT 57.550 29.630 2.30 0.00 0.00 4.18
544 548 9.704098 GAGATTAAAATTACATGTTTCCGACTC 57.296 33.333 2.30 0.00 0.00 3.36
545 549 9.226606 AGATTAAAATTACATGTTTCCGACTCA 57.773 29.630 2.30 0.00 0.00 3.41
577 581 7.786178 TTTACAGGTTGTCATCATACTATGC 57.214 36.000 0.00 0.00 0.00 3.14
610 646 1.474077 GCCAATTGCCGATCTTCAACT 59.526 47.619 0.00 0.00 0.00 3.16
617 653 3.031013 TGCCGATCTTCAACTAGGATCA 58.969 45.455 0.00 0.00 36.59 2.92
619 655 4.054671 GCCGATCTTCAACTAGGATCAAG 58.945 47.826 0.00 0.00 36.59 3.02
620 656 4.442192 GCCGATCTTCAACTAGGATCAAGT 60.442 45.833 0.00 0.00 36.59 3.16
626 662 4.174411 TCAACTAGGATCAAGTGTGTCG 57.826 45.455 0.00 0.00 0.00 4.35
630 666 2.656560 AGGATCAAGTGTGTCGCTAC 57.343 50.000 0.00 0.00 0.00 3.58
671 709 3.181505 CCTCCGGATCTCGATAAATCTCG 60.182 52.174 3.57 0.00 42.43 4.04
965 1008 1.536073 GCTCAGGTTGCCTTTTCCCC 61.536 60.000 0.00 0.00 0.00 4.81
1199 1242 6.455513 CGAATGCTCGTTTTGATCTGTTATCA 60.456 38.462 0.00 0.00 40.33 2.15
1201 1244 6.552859 TGCTCGTTTTGATCTGTTATCAAA 57.447 33.333 8.66 8.66 43.71 2.69
1204 1247 5.938322 TCGTTTTGATCTGTTATCAAAGGC 58.062 37.500 11.67 8.98 45.29 4.35
1292 1335 2.545742 GGTGATTTGGGTGCTGTTTGTC 60.546 50.000 0.00 0.00 0.00 3.18
1301 1344 1.542915 GTGCTGTTTGTCATGCTGGAT 59.457 47.619 0.00 0.00 0.00 3.41
1372 1416 3.365820 CGTTTTTGAATCATTCTGCTGCC 59.634 43.478 0.00 0.00 0.00 4.85
1394 1438 2.670414 GTGCTTCAGATTTGGTCTCTCG 59.330 50.000 0.00 0.00 34.00 4.04
1416 1460 6.791371 TCGGGATAGATCTCCTGTAATAGTT 58.209 40.000 0.00 0.00 41.67 2.24
1419 1463 6.439058 GGGATAGATCTCCTGTAATAGTTGCT 59.561 42.308 0.00 0.00 35.50 3.91
1420 1464 7.038658 GGGATAGATCTCCTGTAATAGTTGCTT 60.039 40.741 0.00 0.00 35.50 3.91
1426 1470 9.384764 GATCTCCTGTAATAGTTGCTTTAAAGT 57.615 33.333 16.38 0.00 0.00 2.66
1436 1480 5.748592 AGTTGCTTTAAAGTAGCGTCAAAG 58.251 37.500 16.38 0.00 41.54 2.77
1468 1545 2.284190 GCAAGCTCCTATTGTCTCCAC 58.716 52.381 0.00 0.00 0.00 4.02
1469 1546 2.093235 GCAAGCTCCTATTGTCTCCACT 60.093 50.000 0.00 0.00 0.00 4.00
1475 1552 3.643320 CTCCTATTGTCTCCACTGCCATA 59.357 47.826 0.00 0.00 0.00 2.74
1491 1568 2.548480 GCCATATCAGTAGGGAAAACGC 59.452 50.000 0.00 0.00 33.58 4.84
1552 1633 2.621070 AGGGTCAAGTGTATCACCTGT 58.379 47.619 0.00 0.00 34.49 4.00
1557 1638 4.406003 GGTCAAGTGTATCACCTGTAGGAT 59.594 45.833 4.64 0.00 38.94 3.24
1565 1646 1.471287 TCACCTGTAGGATGTCGTTCG 59.529 52.381 4.64 0.00 38.94 3.95
1579 1660 4.175516 TGTCGTTCGTATACATTTGGGTC 58.824 43.478 3.32 0.00 0.00 4.46
1583 1664 4.085261 CGTTCGTATACATTTGGGTCGATG 60.085 45.833 3.32 0.00 0.00 3.84
1589 1715 3.924114 ACATTTGGGTCGATGTGGATA 57.076 42.857 0.00 0.00 35.31 2.59
1590 1716 3.808728 ACATTTGGGTCGATGTGGATAG 58.191 45.455 0.00 0.00 35.31 2.08
1597 1723 2.165641 GGTCGATGTGGATAGTGTGTGA 59.834 50.000 0.00 0.00 0.00 3.58
1599 1725 3.089284 TCGATGTGGATAGTGTGTGAGT 58.911 45.455 0.00 0.00 0.00 3.41
1632 1758 5.127682 AGAAACAGGAATATTTGATGCCCAC 59.872 40.000 0.00 0.00 0.00 4.61
1827 1967 2.282701 TACACGCGTTGGGTATCTTC 57.717 50.000 10.22 0.00 0.00 2.87
1949 2091 5.902681 TCCTTTATTCAGTCCTATGTGTCG 58.097 41.667 0.00 0.00 0.00 4.35
2001 2160 9.527157 TTCAATTATATCCTGTTCTTTTGGTGA 57.473 29.630 0.00 0.00 0.00 4.02
2153 2318 1.412710 TCCACTCTGACACCTCAACAC 59.587 52.381 0.00 0.00 0.00 3.32
2160 2325 1.948834 TGACACCTCAACACTGCATTG 59.051 47.619 1.95 1.95 0.00 2.82
2212 2377 6.351881 CCTGTATGGTGATAAGGTACACTTGT 60.352 42.308 0.00 0.00 40.37 3.16
2380 2546 7.200434 AGCTGATCTTTATTCTTTCCTACCA 57.800 36.000 0.00 0.00 0.00 3.25
2409 2575 5.239087 CCCTGCTTTAACACAATGCATTTTT 59.761 36.000 9.83 6.09 33.02 1.94
2555 2721 7.620094 AGAATCAACCTACTTGTGGATACTACT 59.380 37.037 0.00 0.00 28.59 2.57
2753 2999 6.094603 GCTGTCATTATCTCAGTTTGAATGGT 59.905 38.462 0.00 0.00 0.00 3.55
3031 3290 5.559770 TGTGCTTGTTCAATCTGATCCTAA 58.440 37.500 0.00 0.00 0.00 2.69
3086 3347 5.880054 ATATAGTTGTGCCACTTGTGTTC 57.120 39.130 0.00 0.00 0.00 3.18
3108 3369 5.988287 TCATGTATGTGAATCTAGTTGGCA 58.012 37.500 0.00 0.00 0.00 4.92
3188 3449 5.882553 TGATGATGTGTTGATTGCATACAC 58.117 37.500 12.34 12.34 41.85 2.90
3365 3626 9.661563 TGATTACGGAGAACATTTTTACTACAT 57.338 29.630 0.00 0.00 0.00 2.29
3368 3629 7.129109 ACGGAGAACATTTTTACTACATGTG 57.871 36.000 9.11 0.93 31.37 3.21
3369 3630 6.932400 ACGGAGAACATTTTTACTACATGTGA 59.068 34.615 9.11 0.00 31.37 3.58
3370 3631 7.606456 ACGGAGAACATTTTTACTACATGTGAT 59.394 33.333 9.11 0.00 31.37 3.06
3371 3632 9.093970 CGGAGAACATTTTTACTACATGTGATA 57.906 33.333 9.11 0.00 31.37 2.15
3574 3837 5.505173 TTTAAGATGCTTGCAGCCTTATC 57.495 39.130 7.26 0.00 41.51 1.75
3630 3893 4.136796 TGGATGTCCAGTTTATATGCAGC 58.863 43.478 0.00 0.00 42.01 5.25
3708 3981 2.673368 CCGTGGCTAATGTCTTCACTTC 59.327 50.000 0.00 0.00 0.00 3.01
3725 3998 5.538118 TCACTTCGTATGAGTGTGACAATT 58.462 37.500 14.79 0.00 35.76 2.32
3820 4094 3.251972 AGCTGTTTTGCTCTTTCTAGTGC 59.748 43.478 0.00 0.00 39.34 4.40
3951 4250 2.325583 TAAAATAGCTGCCCTCCACG 57.674 50.000 0.00 0.00 0.00 4.94
4186 4485 1.352352 CAAGAGGTTCCACATGAGGGT 59.648 52.381 9.48 0.00 0.00 4.34
4255 4554 0.955428 GCATTTCTCCTCGTGGTGCA 60.955 55.000 10.21 0.00 32.57 4.57
4286 4585 1.481871 TGGGCAGGTACTACTGTAGC 58.518 55.000 14.55 0.54 44.79 3.58
4290 4589 3.285484 GGCAGGTACTACTGTAGCACTA 58.715 50.000 14.55 0.00 46.30 2.74
4291 4590 3.890147 GGCAGGTACTACTGTAGCACTAT 59.110 47.826 14.55 3.23 46.30 2.12
4331 4632 2.420628 TTTGCGGATTTGCTGAGTTG 57.579 45.000 0.00 0.00 35.36 3.16
4404 4710 5.184864 TCACACCAACAATCTCAAACTTGTT 59.815 36.000 0.00 0.00 44.23 2.83
4425 4731 1.134670 GCTCGGGCTCATCAGTTAGTT 60.135 52.381 0.00 0.00 35.22 2.24
4462 4768 1.098050 GGCTCATGTAAGCTGGTTGG 58.902 55.000 6.38 0.00 42.13 3.77
4468 4774 5.235850 TCATGTAAGCTGGTTGGACTTTA 57.764 39.130 1.72 0.00 0.00 1.85
4469 4775 5.245531 TCATGTAAGCTGGTTGGACTTTAG 58.754 41.667 1.72 0.00 0.00 1.85
4470 4776 4.967084 TGTAAGCTGGTTGGACTTTAGA 57.033 40.909 1.72 0.00 0.00 2.10
4471 4777 5.499004 TGTAAGCTGGTTGGACTTTAGAT 57.501 39.130 1.72 0.00 0.00 1.98
4472 4778 6.614694 TGTAAGCTGGTTGGACTTTAGATA 57.385 37.500 1.72 0.00 0.00 1.98
4473 4779 6.403878 TGTAAGCTGGTTGGACTTTAGATAC 58.596 40.000 1.72 0.00 0.00 2.24
4474 4780 5.763876 AAGCTGGTTGGACTTTAGATACT 57.236 39.130 0.00 0.00 0.00 2.12
4476 4782 5.735766 AGCTGGTTGGACTTTAGATACTTC 58.264 41.667 0.00 0.00 0.00 3.01
4477 4783 5.248477 AGCTGGTTGGACTTTAGATACTTCA 59.752 40.000 0.00 0.00 0.00 3.02
4478 4784 5.582665 GCTGGTTGGACTTTAGATACTTCAG 59.417 44.000 0.00 0.00 0.00 3.02
4479 4785 5.488341 TGGTTGGACTTTAGATACTTCAGC 58.512 41.667 0.00 0.00 0.00 4.26
4480 4786 5.248477 TGGTTGGACTTTAGATACTTCAGCT 59.752 40.000 0.00 0.00 0.00 4.24
4481 4787 5.582665 GGTTGGACTTTAGATACTTCAGCTG 59.417 44.000 7.63 7.63 0.00 4.24
4482 4788 6.398918 GTTGGACTTTAGATACTTCAGCTGA 58.601 40.000 13.74 13.74 0.00 4.26
4483 4789 6.798427 TGGACTTTAGATACTTCAGCTGAT 57.202 37.500 19.04 6.10 0.00 2.90
4485 4791 7.624549 TGGACTTTAGATACTTCAGCTGATTT 58.375 34.615 19.04 10.04 0.00 2.17
4486 4792 7.766278 TGGACTTTAGATACTTCAGCTGATTTC 59.234 37.037 19.04 11.79 0.00 2.17
4496 4807 3.645884 TCAGCTGATTTCTTTTGCAAGC 58.354 40.909 13.74 0.00 0.00 4.01
4505 4816 9.142515 CTGATTTCTTTTGCAAGCAATATGTTA 57.857 29.630 8.46 0.00 35.70 2.41
4520 4831 8.786898 AGCAATATGTTATGATTATTCGCTGTT 58.213 29.630 0.00 0.00 0.00 3.16
4619 4930 3.988379 TTGGAAGTTGATGACTGCAAC 57.012 42.857 0.00 0.00 44.46 4.17
4634 4945 2.226330 TGCAACGCTCACACCTTTATT 58.774 42.857 0.00 0.00 0.00 1.40
4673 4984 9.903682 AGTTCACTTCTTCATTTTTACATGATG 57.096 29.630 0.00 0.00 33.07 3.07
4674 4985 9.897744 GTTCACTTCTTCATTTTTACATGATGA 57.102 29.630 0.00 0.00 36.20 2.92
4717 5036 0.753848 CATGGCTGTGGCATCATCCA 60.754 55.000 12.65 12.65 45.69 3.41
4719 5038 3.117372 GCTGTGGCATCATCCAGC 58.883 61.111 10.70 10.70 42.94 4.85
4749 5068 8.693542 CACGAAATGCAGATCAGTCATATATA 57.306 34.615 0.00 0.00 0.00 0.86
4750 5069 9.310716 CACGAAATGCAGATCAGTCATATATAT 57.689 33.333 0.00 0.00 0.00 0.86
4751 5070 9.310716 ACGAAATGCAGATCAGTCATATATATG 57.689 33.333 15.47 15.47 35.04 1.78
4754 5073 8.434733 AATGCAGATCAGTCATATATATGCAC 57.565 34.615 16.59 14.63 46.81 4.57
4755 5074 6.343703 TGCAGATCAGTCATATATATGCACC 58.656 40.000 16.59 7.96 41.45 5.01
4756 5075 5.757320 GCAGATCAGTCATATATATGCACCC 59.243 44.000 16.59 5.84 37.68 4.61
4758 5077 7.506971 CAGATCAGTCATATATATGCACCCAT 58.493 38.462 16.59 10.33 33.76 4.00
4759 5078 7.991460 CAGATCAGTCATATATATGCACCCATT 59.009 37.037 16.59 0.33 33.76 3.16
4781 5226 8.564574 CCATTTTACTGTAAAGCTACTGAAACA 58.435 33.333 12.30 0.00 32.73 2.83
4852 5297 9.784531 ACAATATACAGAAATAGGTTCCTCATG 57.215 33.333 0.00 0.00 36.86 3.07
4867 5312 2.619849 CCTCATGTTGTGCCCTCTGATT 60.620 50.000 0.00 0.00 0.00 2.57
4948 5619 1.307986 TCGGAGAGGTGAGCCAGAT 59.692 57.895 0.00 0.00 37.19 2.90
5098 5769 4.805744 ACAATAACAAAGGGGTGTACCAA 58.194 39.130 3.11 0.00 42.91 3.67
5116 5787 3.070878 ACCAAAGCCCTGTGTAAAATTGG 59.929 43.478 0.00 0.00 41.35 3.16
5117 5788 3.066380 CAAAGCCCTGTGTAAAATTGGC 58.934 45.455 0.00 0.00 39.17 4.52
5135 5806 4.705482 CCCCCATTGGTCAATCCC 57.295 61.111 1.20 0.00 34.77 3.85
5149 5820 1.891150 CAATCCCAAAAGACTGCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
5334 6007 9.143155 TCACTAGGCTTGTAATCTGTATTATCA 57.857 33.333 0.24 0.00 30.42 2.15
5402 6079 4.509970 GCTTTGTTTTCCCACAAATACACC 59.490 41.667 0.00 0.00 43.93 4.16
5471 6156 5.294552 GGACAAACAGGTCTATAATGCAGAC 59.705 44.000 0.00 0.00 41.43 3.51
5520 6205 6.347725 CCTTAGTTAAGTTGCTGCTAACACAG 60.348 42.308 14.29 8.40 40.80 3.66
5522 6207 5.123227 AGTTAAGTTGCTGCTAACACAGAA 58.877 37.500 14.29 0.00 40.25 3.02
5528 6213 2.357637 TGCTGCTAACACAGAACCAAAC 59.642 45.455 0.00 0.00 40.25 2.93
5529 6214 2.602217 GCTGCTAACACAGAACCAAACG 60.602 50.000 0.00 0.00 40.25 3.60
5539 6224 4.095185 CACAGAACCAAACGGTGTTTCTTA 59.905 41.667 0.00 0.00 36.67 2.10
5552 6237 4.084013 GGTGTTTCTTAAGTGGATCACGTG 60.084 45.833 9.94 9.94 39.64 4.49
5617 6303 2.663606 GCATTTCGGTGTTCGGTGTTAC 60.664 50.000 0.00 0.00 39.77 2.50
5634 6320 4.619227 CGGCGGTGGGTTCACACT 62.619 66.667 0.00 0.00 45.32 3.55
5768 6460 0.109086 CAGTCGATGCTCCTCACGTT 60.109 55.000 0.00 0.00 0.00 3.99
5848 6540 1.006832 ATTGTCGAACCTGCATACGC 58.993 50.000 0.00 0.00 39.24 4.42
5879 6571 2.202797 CGACGCATGGTAGCAGCT 60.203 61.111 0.00 0.00 0.00 4.24
5893 6585 3.249986 AGCAGCTTTGAGCAAACAAAA 57.750 38.095 2.47 0.00 45.56 2.44
5906 6598 9.755804 TTGAGCAAACAAAACATATAAATGACA 57.244 25.926 0.00 0.00 36.54 3.58
5907 6599 9.926158 TGAGCAAACAAAACATATAAATGACAT 57.074 25.926 0.00 0.00 36.54 3.06
5927 6639 1.274703 GCCATGGGTGGGAGAGAGAA 61.275 60.000 15.13 0.00 46.14 2.87
5949 6661 0.981183 ATGACCTGCCGGTGTAGAAA 59.019 50.000 3.79 0.00 45.73 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.453155 GCCAGGTAGTGTCATGTTGG 58.547 55.000 0.00 0.00 0.00 3.77
1 2 1.453155 GGCCAGGTAGTGTCATGTTG 58.547 55.000 0.00 0.00 0.00 3.33
2 3 0.036388 CGGCCAGGTAGTGTCATGTT 60.036 55.000 2.24 0.00 0.00 2.71
3 4 1.596934 CGGCCAGGTAGTGTCATGT 59.403 57.895 2.24 0.00 0.00 3.21
4 5 1.815421 GCGGCCAGGTAGTGTCATG 60.815 63.158 2.24 0.00 0.00 3.07
5 6 2.584608 GCGGCCAGGTAGTGTCAT 59.415 61.111 2.24 0.00 0.00 3.06
6 7 3.702048 GGCGGCCAGGTAGTGTCA 61.702 66.667 15.62 0.00 0.00 3.58
7 8 4.468689 GGGCGGCCAGGTAGTGTC 62.469 72.222 25.33 0.00 0.00 3.67
9 10 3.717294 AAGGGCGGCCAGGTAGTG 61.717 66.667 31.59 0.00 0.00 2.74
10 11 3.717294 CAAGGGCGGCCAGGTAGT 61.717 66.667 31.59 4.80 0.00 2.73
11 12 2.966732 TTCAAGGGCGGCCAGGTAG 61.967 63.158 31.59 14.27 0.00 3.18
12 13 2.931105 TTCAAGGGCGGCCAGGTA 60.931 61.111 31.59 12.42 0.00 3.08
13 14 4.660938 GTTCAAGGGCGGCCAGGT 62.661 66.667 31.59 12.19 0.00 4.00
15 16 4.697756 TCGTTCAAGGGCGGCCAG 62.698 66.667 31.59 21.81 0.00 4.85
16 17 4.257654 TTCGTTCAAGGGCGGCCA 62.258 61.111 31.59 6.60 0.00 5.36
17 18 3.733960 GTTCGTTCAAGGGCGGCC 61.734 66.667 22.67 22.67 0.00 6.13
18 19 4.084888 CGTTCGTTCAAGGGCGGC 62.085 66.667 0.00 0.00 0.00 6.53
19 20 1.296056 ATTCGTTCGTTCAAGGGCGG 61.296 55.000 0.00 0.00 0.00 6.13
20 21 0.179225 CATTCGTTCGTTCAAGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
21 22 0.454452 GCATTCGTTCGTTCAAGGGC 60.454 55.000 0.00 0.00 0.00 5.19
22 23 0.179225 CGCATTCGTTCGTTCAAGGG 60.179 55.000 0.00 0.00 0.00 3.95
23 24 0.787787 TCGCATTCGTTCGTTCAAGG 59.212 50.000 0.00 0.00 36.96 3.61
24 25 2.222624 GTTCGCATTCGTTCGTTCAAG 58.777 47.619 0.00 0.00 36.96 3.02
25 26 1.593469 TGTTCGCATTCGTTCGTTCAA 59.407 42.857 0.00 0.00 36.96 2.69
26 27 1.209998 TGTTCGCATTCGTTCGTTCA 58.790 45.000 0.00 0.00 36.96 3.18
27 28 2.288365 TTGTTCGCATTCGTTCGTTC 57.712 45.000 0.00 0.00 36.96 3.95
28 29 2.741122 TTTGTTCGCATTCGTTCGTT 57.259 40.000 0.00 0.00 36.96 3.85
29 30 2.961522 ATTTGTTCGCATTCGTTCGT 57.038 40.000 0.00 0.00 36.96 3.85
30 31 3.773549 CAGTATTTGTTCGCATTCGTTCG 59.226 43.478 0.00 0.00 36.96 3.95
31 32 4.953269 TCAGTATTTGTTCGCATTCGTTC 58.047 39.130 0.00 0.00 36.96 3.95
32 33 4.688879 TCTCAGTATTTGTTCGCATTCGTT 59.311 37.500 0.00 0.00 36.96 3.85
33 34 4.091509 GTCTCAGTATTTGTTCGCATTCGT 59.908 41.667 0.00 0.00 36.96 3.85
34 35 4.091365 TGTCTCAGTATTTGTTCGCATTCG 59.909 41.667 0.00 0.00 0.00 3.34
35 36 5.530519 TGTCTCAGTATTTGTTCGCATTC 57.469 39.130 0.00 0.00 0.00 2.67
36 37 5.940192 TTGTCTCAGTATTTGTTCGCATT 57.060 34.783 0.00 0.00 0.00 3.56
37 38 5.940192 TTTGTCTCAGTATTTGTTCGCAT 57.060 34.783 0.00 0.00 0.00 4.73
38 39 5.940192 ATTTGTCTCAGTATTTGTTCGCA 57.060 34.783 0.00 0.00 0.00 5.10
39 40 8.722342 TTAAATTTGTCTCAGTATTTGTTCGC 57.278 30.769 0.00 0.00 0.00 4.70
47 48 9.178758 GGACCTGAATTAAATTTGTCTCAGTAT 57.821 33.333 17.15 9.68 30.55 2.12
48 49 8.160765 TGGACCTGAATTAAATTTGTCTCAGTA 58.839 33.333 17.15 5.41 30.55 2.74
49 50 7.004086 TGGACCTGAATTAAATTTGTCTCAGT 58.996 34.615 17.15 9.90 30.55 3.41
50 51 7.175641 ACTGGACCTGAATTAAATTTGTCTCAG 59.824 37.037 5.22 13.96 0.00 3.35
51 52 7.004086 ACTGGACCTGAATTAAATTTGTCTCA 58.996 34.615 5.22 0.00 0.00 3.27
52 53 7.040409 ACACTGGACCTGAATTAAATTTGTCTC 60.040 37.037 5.22 0.00 0.00 3.36
53 54 6.777580 ACACTGGACCTGAATTAAATTTGTCT 59.222 34.615 5.22 0.00 0.00 3.41
54 55 6.981722 ACACTGGACCTGAATTAAATTTGTC 58.018 36.000 5.22 0.00 0.00 3.18
55 56 6.976934 ACACTGGACCTGAATTAAATTTGT 57.023 33.333 5.22 0.00 0.00 2.83
56 57 9.357652 CAATACACTGGACCTGAATTAAATTTG 57.642 33.333 5.22 0.00 0.00 2.32
57 58 8.034804 GCAATACACTGGACCTGAATTAAATTT 58.965 33.333 5.22 0.00 0.00 1.82
58 59 7.547227 GCAATACACTGGACCTGAATTAAATT 58.453 34.615 5.22 0.00 0.00 1.82
59 60 6.183360 CGCAATACACTGGACCTGAATTAAAT 60.183 38.462 5.22 0.00 0.00 1.40
60 61 5.123186 CGCAATACACTGGACCTGAATTAAA 59.877 40.000 5.22 0.00 0.00 1.52
61 62 4.634004 CGCAATACACTGGACCTGAATTAA 59.366 41.667 5.22 0.00 0.00 1.40
62 63 4.081365 TCGCAATACACTGGACCTGAATTA 60.081 41.667 5.22 0.00 0.00 1.40
63 64 3.009723 CGCAATACACTGGACCTGAATT 58.990 45.455 5.22 0.00 0.00 2.17
64 65 2.236146 TCGCAATACACTGGACCTGAAT 59.764 45.455 5.22 0.00 0.00 2.57
65 66 1.621317 TCGCAATACACTGGACCTGAA 59.379 47.619 5.22 0.00 0.00 3.02
66 67 1.067142 GTCGCAATACACTGGACCTGA 60.067 52.381 5.22 0.00 0.00 3.86
67 68 1.066858 AGTCGCAATACACTGGACCTG 60.067 52.381 0.00 0.00 0.00 4.00
68 69 1.267121 AGTCGCAATACACTGGACCT 58.733 50.000 0.00 0.00 0.00 3.85
69 70 1.732259 CAAGTCGCAATACACTGGACC 59.268 52.381 0.00 0.00 0.00 4.46
70 71 2.683968 TCAAGTCGCAATACACTGGAC 58.316 47.619 0.00 0.00 0.00 4.02
71 72 3.394674 TTCAAGTCGCAATACACTGGA 57.605 42.857 0.00 0.00 0.00 3.86
72 73 4.154015 TGAATTCAAGTCGCAATACACTGG 59.846 41.667 5.45 0.00 0.00 4.00
73 74 5.120674 TCTGAATTCAAGTCGCAATACACTG 59.879 40.000 9.88 0.00 0.00 3.66
74 75 5.237815 TCTGAATTCAAGTCGCAATACACT 58.762 37.500 9.88 0.00 0.00 3.55
75 76 5.530519 TCTGAATTCAAGTCGCAATACAC 57.469 39.130 9.88 0.00 0.00 2.90
76 77 6.552859 TTTCTGAATTCAAGTCGCAATACA 57.447 33.333 9.88 0.00 0.00 2.29
77 78 7.061094 CCTTTTTCTGAATTCAAGTCGCAATAC 59.939 37.037 9.88 0.00 0.00 1.89
78 79 7.083858 CCTTTTTCTGAATTCAAGTCGCAATA 58.916 34.615 9.88 0.00 0.00 1.90
79 80 5.922544 CCTTTTTCTGAATTCAAGTCGCAAT 59.077 36.000 9.88 0.00 0.00 3.56
80 81 5.280945 CCTTTTTCTGAATTCAAGTCGCAA 58.719 37.500 9.88 0.00 0.00 4.85
81 82 4.792704 GCCTTTTTCTGAATTCAAGTCGCA 60.793 41.667 9.88 0.00 0.00 5.10
82 83 3.670523 GCCTTTTTCTGAATTCAAGTCGC 59.329 43.478 9.88 0.30 0.00 5.19
83 84 4.858935 TGCCTTTTTCTGAATTCAAGTCG 58.141 39.130 9.88 0.00 0.00 4.18
84 85 5.693555 CCTTGCCTTTTTCTGAATTCAAGTC 59.306 40.000 9.88 0.00 0.00 3.01
85 86 5.453762 CCCTTGCCTTTTTCTGAATTCAAGT 60.454 40.000 9.88 0.00 0.00 3.16
86 87 4.992951 CCCTTGCCTTTTTCTGAATTCAAG 59.007 41.667 9.88 3.41 0.00 3.02
87 88 4.408596 ACCCTTGCCTTTTTCTGAATTCAA 59.591 37.500 9.88 0.00 0.00 2.69
88 89 3.966665 ACCCTTGCCTTTTTCTGAATTCA 59.033 39.130 8.12 8.12 0.00 2.57
89 90 4.607293 ACCCTTGCCTTTTTCTGAATTC 57.393 40.909 0.00 0.00 0.00 2.17
90 91 6.043127 ACATAACCCTTGCCTTTTTCTGAATT 59.957 34.615 0.00 0.00 0.00 2.17
91 92 5.543790 ACATAACCCTTGCCTTTTTCTGAAT 59.456 36.000 0.00 0.00 0.00 2.57
92 93 4.898861 ACATAACCCTTGCCTTTTTCTGAA 59.101 37.500 0.00 0.00 0.00 3.02
93 94 4.280677 CACATAACCCTTGCCTTTTTCTGA 59.719 41.667 0.00 0.00 0.00 3.27
94 95 4.559153 CACATAACCCTTGCCTTTTTCTG 58.441 43.478 0.00 0.00 0.00 3.02
95 96 3.006859 GCACATAACCCTTGCCTTTTTCT 59.993 43.478 0.00 0.00 0.00 2.52
96 97 3.244044 TGCACATAACCCTTGCCTTTTTC 60.244 43.478 0.00 0.00 35.26 2.29
97 98 2.703007 TGCACATAACCCTTGCCTTTTT 59.297 40.909 0.00 0.00 35.26 1.94
98 99 2.324541 TGCACATAACCCTTGCCTTTT 58.675 42.857 0.00 0.00 35.26 2.27
99 100 2.008242 TGCACATAACCCTTGCCTTT 57.992 45.000 0.00 0.00 35.26 3.11
100 101 2.008242 TTGCACATAACCCTTGCCTT 57.992 45.000 0.00 0.00 35.26 4.35
101 102 2.008242 TTTGCACATAACCCTTGCCT 57.992 45.000 0.00 0.00 35.26 4.75
102 103 2.037121 ACTTTTGCACATAACCCTTGCC 59.963 45.455 0.00 0.00 35.26 4.52
103 104 3.059166 CACTTTTGCACATAACCCTTGC 58.941 45.455 0.00 0.00 36.76 4.01
117 118 1.391485 CGATCGTCCTCTGCACTTTTG 59.609 52.381 7.03 0.00 0.00 2.44
118 119 1.673033 CCGATCGTCCTCTGCACTTTT 60.673 52.381 15.09 0.00 0.00 2.27
119 120 0.108615 CCGATCGTCCTCTGCACTTT 60.109 55.000 15.09 0.00 0.00 2.66
120 121 1.513158 CCGATCGTCCTCTGCACTT 59.487 57.895 15.09 0.00 0.00 3.16
121 122 3.069980 GCCGATCGTCCTCTGCACT 62.070 63.158 15.09 0.00 0.00 4.40
122 123 2.583593 GCCGATCGTCCTCTGCAC 60.584 66.667 15.09 0.00 0.00 4.57
123 124 2.755876 AGCCGATCGTCCTCTGCA 60.756 61.111 15.09 0.00 0.00 4.41
124 125 2.026879 GAGCCGATCGTCCTCTGC 59.973 66.667 19.75 12.97 0.00 4.26
125 126 2.329690 CGAGCCGATCGTCCTCTG 59.670 66.667 22.55 15.49 46.62 3.35
133 134 1.519455 CCAAGTGGTCGAGCCGATC 60.519 63.158 12.85 1.07 38.42 3.69
134 135 2.579201 CCAAGTGGTCGAGCCGAT 59.421 61.111 12.85 0.00 38.42 4.18
135 136 3.691342 CCCAAGTGGTCGAGCCGA 61.691 66.667 12.85 0.00 41.21 5.54
142 143 4.643387 AGTGGCGCCCAAGTGGTC 62.643 66.667 26.77 4.02 34.18 4.02
143 144 4.204028 AAGTGGCGCCCAAGTGGT 62.204 61.111 26.77 0.00 34.18 4.16
144 145 3.673484 CAAGTGGCGCCCAAGTGG 61.673 66.667 26.77 2.11 34.18 4.00
145 146 2.906897 ACAAGTGGCGCCCAAGTG 60.907 61.111 26.77 18.68 34.18 3.16
146 147 2.594592 GACAAGTGGCGCCCAAGT 60.595 61.111 26.77 17.34 34.18 3.16
147 148 2.281761 AGACAAGTGGCGCCCAAG 60.282 61.111 26.77 13.90 34.18 3.61
148 149 2.281484 GAGACAAGTGGCGCCCAA 60.281 61.111 26.77 2.06 34.18 4.12
149 150 4.680237 CGAGACAAGTGGCGCCCA 62.680 66.667 26.77 9.53 0.00 5.36
153 154 2.091112 CAGAGCGAGACAAGTGGCG 61.091 63.158 0.00 0.00 0.00 5.69
154 155 0.108424 ATCAGAGCGAGACAAGTGGC 60.108 55.000 0.00 0.00 0.00 5.01
155 156 1.998315 CAATCAGAGCGAGACAAGTGG 59.002 52.381 0.00 0.00 0.00 4.00
156 157 1.998315 CCAATCAGAGCGAGACAAGTG 59.002 52.381 0.00 0.00 0.00 3.16
157 158 1.066573 CCCAATCAGAGCGAGACAAGT 60.067 52.381 0.00 0.00 0.00 3.16
158 159 1.649664 CCCAATCAGAGCGAGACAAG 58.350 55.000 0.00 0.00 0.00 3.16
159 160 0.391661 GCCCAATCAGAGCGAGACAA 60.392 55.000 0.00 0.00 0.00 3.18
160 161 1.219124 GCCCAATCAGAGCGAGACA 59.781 57.895 0.00 0.00 0.00 3.41
161 162 0.747255 TAGCCCAATCAGAGCGAGAC 59.253 55.000 0.00 0.00 0.00 3.36
162 163 1.342496 CATAGCCCAATCAGAGCGAGA 59.658 52.381 0.00 0.00 0.00 4.04
163 164 1.342496 TCATAGCCCAATCAGAGCGAG 59.658 52.381 0.00 0.00 0.00 5.03
164 165 1.069204 GTCATAGCCCAATCAGAGCGA 59.931 52.381 0.00 0.00 0.00 4.93
165 166 1.506493 GTCATAGCCCAATCAGAGCG 58.494 55.000 0.00 0.00 0.00 5.03
166 167 1.141657 TGGTCATAGCCCAATCAGAGC 59.858 52.381 0.00 0.00 0.00 4.09
167 168 3.565764 TTGGTCATAGCCCAATCAGAG 57.434 47.619 0.00 0.00 37.05 3.35
168 169 4.079844 TGATTTGGTCATAGCCCAATCAGA 60.080 41.667 7.30 0.00 42.25 3.27
169 170 4.209538 TGATTTGGTCATAGCCCAATCAG 58.790 43.478 7.30 0.00 42.25 2.90
170 171 4.248174 TGATTTGGTCATAGCCCAATCA 57.752 40.909 7.30 7.30 43.79 2.57
194 195 5.413833 CCATTCTCAAACTTGCACTAGATGT 59.586 40.000 0.00 0.00 0.00 3.06
195 196 5.413833 ACCATTCTCAAACTTGCACTAGATG 59.586 40.000 0.00 0.00 0.00 2.90
196 197 5.413833 CACCATTCTCAAACTTGCACTAGAT 59.586 40.000 0.00 0.00 0.00 1.98
197 198 4.756642 CACCATTCTCAAACTTGCACTAGA 59.243 41.667 0.00 0.00 0.00 2.43
198 199 4.516698 ACACCATTCTCAAACTTGCACTAG 59.483 41.667 0.00 0.00 0.00 2.57
199 200 4.275689 CACACCATTCTCAAACTTGCACTA 59.724 41.667 0.00 0.00 0.00 2.74
200 201 3.067180 CACACCATTCTCAAACTTGCACT 59.933 43.478 0.00 0.00 0.00 4.40
201 202 3.374745 CACACCATTCTCAAACTTGCAC 58.625 45.455 0.00 0.00 0.00 4.57
202 203 2.361757 CCACACCATTCTCAAACTTGCA 59.638 45.455 0.00 0.00 0.00 4.08
203 204 2.362077 ACCACACCATTCTCAAACTTGC 59.638 45.455 0.00 0.00 0.00 4.01
204 205 3.796504 GCACCACACCATTCTCAAACTTG 60.797 47.826 0.00 0.00 0.00 3.16
205 206 2.362077 GCACCACACCATTCTCAAACTT 59.638 45.455 0.00 0.00 0.00 2.66
206 207 1.956477 GCACCACACCATTCTCAAACT 59.044 47.619 0.00 0.00 0.00 2.66
207 208 1.680735 TGCACCACACCATTCTCAAAC 59.319 47.619 0.00 0.00 0.00 2.93
208 209 1.680735 GTGCACCACACCATTCTCAAA 59.319 47.619 5.22 0.00 44.02 2.69
209 210 1.317613 GTGCACCACACCATTCTCAA 58.682 50.000 5.22 0.00 44.02 3.02
210 211 3.019964 GTGCACCACACCATTCTCA 57.980 52.632 5.22 0.00 44.02 3.27
226 227 7.271223 CGATTTAGTCCAATAGTTGCAAAAGTG 59.729 37.037 0.00 1.80 0.00 3.16
227 228 7.040686 ACGATTTAGTCCAATAGTTGCAAAAGT 60.041 33.333 0.00 0.00 0.00 2.66
228 229 7.305474 ACGATTTAGTCCAATAGTTGCAAAAG 58.695 34.615 0.00 0.00 0.00 2.27
229 230 7.209471 ACGATTTAGTCCAATAGTTGCAAAA 57.791 32.000 0.00 0.00 0.00 2.44
230 231 6.811253 ACGATTTAGTCCAATAGTTGCAAA 57.189 33.333 0.00 0.00 0.00 3.68
231 232 6.811253 AACGATTTAGTCCAATAGTTGCAA 57.189 33.333 0.00 0.00 32.60 4.08
232 233 6.874664 TGTAACGATTTAGTCCAATAGTTGCA 59.125 34.615 6.24 6.24 39.89 4.08
233 234 7.298507 TGTAACGATTTAGTCCAATAGTTGC 57.701 36.000 0.00 2.65 35.99 4.17
234 235 9.916397 GAATGTAACGATTTAGTCCAATAGTTG 57.084 33.333 0.00 0.00 34.18 3.16
235 236 9.886132 AGAATGTAACGATTTAGTCCAATAGTT 57.114 29.630 0.00 0.00 36.38 2.24
236 237 9.314321 CAGAATGTAACGATTTAGTCCAATAGT 57.686 33.333 0.00 0.00 0.00 2.12
237 238 8.765219 CCAGAATGTAACGATTTAGTCCAATAG 58.235 37.037 0.00 0.00 0.00 1.73
241 242 6.103997 GTCCAGAATGTAACGATTTAGTCCA 58.896 40.000 0.00 0.00 0.00 4.02
254 255 7.770433 CCAAATCTAGAACATGTCCAGAATGTA 59.230 37.037 0.00 0.00 37.27 2.29
262 263 3.947834 CACCCCAAATCTAGAACATGTCC 59.052 47.826 0.00 0.00 0.00 4.02
263 264 3.378427 GCACCCCAAATCTAGAACATGTC 59.622 47.826 0.00 0.00 0.00 3.06
267 268 3.806949 AAGCACCCCAAATCTAGAACA 57.193 42.857 0.00 0.00 0.00 3.18
270 271 7.182060 AGAATTAAAAGCACCCCAAATCTAGA 58.818 34.615 0.00 0.00 0.00 2.43
275 276 6.686484 AGAAGAATTAAAAGCACCCCAAAT 57.314 33.333 0.00 0.00 0.00 2.32
276 277 6.493189 AAGAAGAATTAAAAGCACCCCAAA 57.507 33.333 0.00 0.00 0.00 3.28
277 278 6.326323 AGAAAGAAGAATTAAAAGCACCCCAA 59.674 34.615 0.00 0.00 0.00 4.12
279 280 6.346477 AGAAAGAAGAATTAAAAGCACCCC 57.654 37.500 0.00 0.00 0.00 4.95
323 325 2.389962 TTTTCGATCAACGGGGGTAG 57.610 50.000 0.00 0.00 42.82 3.18
330 333 7.891183 AGGGATATATCTTTTTCGATCAACG 57.109 36.000 12.42 0.00 44.09 4.10
377 381 5.227805 CGATCCAACGTGCAATTTAATCAAG 59.772 40.000 0.00 0.00 0.00 3.02
378 382 5.092105 CGATCCAACGTGCAATTTAATCAA 58.908 37.500 0.00 0.00 0.00 2.57
379 383 4.155099 ACGATCCAACGTGCAATTTAATCA 59.845 37.500 0.00 0.00 44.84 2.57
394 398 7.996098 AAATCTCCTTTTCTTTACGATCCAA 57.004 32.000 0.00 0.00 0.00 3.53
567 571 4.853924 TTCTCATCGCAGCATAGTATGA 57.146 40.909 14.52 0.00 0.00 2.15
572 576 1.530293 GGCTTTCTCATCGCAGCATAG 59.470 52.381 0.00 0.00 33.64 2.23
575 579 0.606130 TTGGCTTTCTCATCGCAGCA 60.606 50.000 0.00 0.00 33.64 4.41
576 580 0.737219 ATTGGCTTTCTCATCGCAGC 59.263 50.000 0.00 0.00 0.00 5.25
577 581 2.793933 CAATTGGCTTTCTCATCGCAG 58.206 47.619 0.00 0.00 0.00 5.18
610 646 3.353557 AGTAGCGACACACTTGATCCTA 58.646 45.455 0.00 0.00 0.00 2.94
617 653 3.067106 CCATTTGAGTAGCGACACACTT 58.933 45.455 0.00 0.00 0.00 3.16
619 655 1.128692 GCCATTTGAGTAGCGACACAC 59.871 52.381 0.00 0.00 0.00 3.82
620 656 1.438651 GCCATTTGAGTAGCGACACA 58.561 50.000 0.00 0.00 0.00 3.72
626 662 0.392461 TCCGTGGCCATTTGAGTAGC 60.392 55.000 9.72 0.00 0.00 3.58
630 666 3.190878 GCTCCGTGGCCATTTGAG 58.809 61.111 9.72 16.26 0.00 3.02
671 709 2.480244 GGCGCCATCCTTCTCAAAATTC 60.480 50.000 24.80 0.00 0.00 2.17
778 820 2.409870 GGCCCAAATCTGTCCAGCG 61.410 63.158 0.00 0.00 0.00 5.18
944 987 1.271926 GGGAAAAGGCAACCTGAGCTA 60.272 52.381 0.00 0.00 32.13 3.32
1204 1247 2.814913 AAAAACCCTAGAGGCGGCCG 62.815 60.000 24.05 24.05 40.58 6.13
1229 1272 3.288308 CTCGAACCAGCAGCCGAGT 62.288 63.158 9.21 0.00 42.29 4.18
1292 1335 1.108776 CCTCCAAACCATCCAGCATG 58.891 55.000 0.00 0.00 0.00 4.06
1301 1344 6.789457 ACTCATATCTATCATCCTCCAAACCA 59.211 38.462 0.00 0.00 0.00 3.67
1372 1416 2.670414 GAGAGACCAAATCTGAAGCACG 59.330 50.000 0.00 0.00 38.00 5.34
1394 1438 6.439058 AGCAACTATTACAGGAGATCTATCCC 59.561 42.308 0.00 0.00 40.53 3.85
1416 1460 5.407387 CCTACTTTGACGCTACTTTAAAGCA 59.593 40.000 15.24 1.13 40.08 3.91
1419 1463 8.611654 AATTCCTACTTTGACGCTACTTTAAA 57.388 30.769 0.00 0.00 0.00 1.52
1420 1464 8.611654 AAATTCCTACTTTGACGCTACTTTAA 57.388 30.769 0.00 0.00 0.00 1.52
1426 1470 5.239744 TGCAAAAATTCCTACTTTGACGCTA 59.760 36.000 4.16 0.00 32.87 4.26
1436 1480 4.790765 AGGAGCTTGCAAAAATTCCTAC 57.209 40.909 15.24 1.57 30.91 3.18
1468 1545 3.809832 CGTTTTCCCTACTGATATGGCAG 59.190 47.826 0.00 0.00 41.63 4.85
1469 1546 3.804036 CGTTTTCCCTACTGATATGGCA 58.196 45.455 0.00 0.00 0.00 4.92
1475 1552 2.505819 AGATGGCGTTTTCCCTACTGAT 59.494 45.455 0.00 0.00 0.00 2.90
1491 1568 1.106285 GCACTTGCCCCTAAAGATGG 58.894 55.000 0.00 0.00 34.31 3.51
1526 1603 4.636206 GGTGATACACTTGACCCTTCATTC 59.364 45.833 0.00 0.00 34.40 2.67
1527 1604 4.289672 AGGTGATACACTTGACCCTTCATT 59.710 41.667 0.00 0.00 34.40 2.57
1529 1606 3.007940 CAGGTGATACACTTGACCCTTCA 59.992 47.826 7.99 0.00 42.78 3.02
1530 1607 3.008049 ACAGGTGATACACTTGACCCTTC 59.992 47.826 17.98 0.00 42.78 3.46
1531 1608 2.979678 ACAGGTGATACACTTGACCCTT 59.020 45.455 17.98 0.00 42.78 3.95
1533 1610 3.118738 CCTACAGGTGATACACTTGACCC 60.119 52.174 17.98 0.00 42.78 4.46
1552 1633 6.210796 CCAAATGTATACGAACGACATCCTA 58.789 40.000 0.14 0.00 32.67 2.94
1557 1638 4.175516 GACCCAAATGTATACGAACGACA 58.824 43.478 0.14 0.00 0.00 4.35
1565 1646 4.699637 TCCACATCGACCCAAATGTATAC 58.300 43.478 0.00 0.00 34.42 1.47
1579 1660 3.510388 ACTCACACACTATCCACATCG 57.490 47.619 0.00 0.00 0.00 3.84
1583 1664 3.498397 CCAACAACTCACACACTATCCAC 59.502 47.826 0.00 0.00 0.00 4.02
1589 1715 2.236146 TCTGACCAACAACTCACACACT 59.764 45.455 0.00 0.00 0.00 3.55
1590 1716 2.627945 TCTGACCAACAACTCACACAC 58.372 47.619 0.00 0.00 0.00 3.82
1597 1723 3.644966 TCCTGTTTCTGACCAACAACT 57.355 42.857 0.00 0.00 33.74 3.16
1599 1725 7.286546 TCAAATATTCCTGTTTCTGACCAACAA 59.713 33.333 0.00 0.00 33.74 2.83
1827 1967 3.157087 ACAACCTTTGGAACCAGCTATG 58.843 45.455 0.00 0.00 34.12 2.23
1887 2029 1.881973 ACAATGACGATGCTGTTGCTT 59.118 42.857 0.00 0.00 40.48 3.91
1895 2037 5.469373 TCTGAACAATACAATGACGATGC 57.531 39.130 0.00 0.00 0.00 3.91
1949 2091 5.924825 GCAAATTATTGATCAGAATGCCCTC 59.075 40.000 0.00 0.00 38.94 4.30
1996 2155 6.485830 TTATGGGTTGAACAAAAATCACCA 57.514 33.333 0.00 0.00 30.38 4.17
2071 2231 1.227102 CAGATGAAATGGGCGGGGA 59.773 57.895 0.00 0.00 0.00 4.81
2072 2232 2.492773 GCAGATGAAATGGGCGGGG 61.493 63.158 0.00 0.00 0.00 5.73
2074 2234 1.679139 TAAGCAGATGAAATGGGCGG 58.321 50.000 0.00 0.00 0.00 6.13
2188 2353 6.640518 ACAAGTGTACCTTATCACCATACAG 58.359 40.000 0.00 0.00 35.45 2.74
2233 2398 5.388944 TGCAAAACAAAGAAAATGCAACAC 58.611 33.333 0.00 0.00 40.47 3.32
2409 2575 5.297547 GTCAGCCATTCGGAGATGTAATAA 58.702 41.667 0.00 0.00 35.04 1.40
2410 2576 4.262463 GGTCAGCCATTCGGAGATGTAATA 60.262 45.833 0.00 0.00 32.34 0.98
2555 2721 9.342308 GAACATGGTATCATTGGAAAGAATAGA 57.658 33.333 0.00 0.00 0.00 1.98
2753 2999 1.555075 ACGAGAAGCCTGCTCCATTTA 59.445 47.619 0.00 0.00 0.00 1.40
2872 3131 2.553602 GTGTGATCTGCAACCATTGTGA 59.446 45.455 0.00 0.00 0.00 3.58
2940 3199 6.168270 ACAGGCTAGAACTGGAATAAGATC 57.832 41.667 16.28 0.00 40.23 2.75
2985 3244 1.965935 TTTCTAGCACAGCTGCAACA 58.034 45.000 15.27 0.00 46.97 3.33
3086 3347 6.484308 TGATGCCAACTAGATTCACATACATG 59.516 38.462 0.00 0.00 0.00 3.21
3188 3449 8.310406 TCATACAACTAGTTTCACAAGTCATG 57.690 34.615 5.07 5.39 0.00 3.07
3229 3490 3.711190 TCCTAAGCATGGTGATAGAGCAA 59.289 43.478 0.00 0.00 35.17 3.91
3365 3626 9.914131 GACAGCAATACTATGATTACTATCACA 57.086 33.333 0.00 0.00 43.29 3.58
3412 3674 5.544650 CCGTACCTGGTTAGAAAGAAAGAA 58.455 41.667 3.84 0.00 0.00 2.52
3415 3677 3.071312 TGCCGTACCTGGTTAGAAAGAAA 59.929 43.478 3.84 0.00 0.00 2.52
3562 3825 2.106074 CCGCACGATAAGGCTGCAA 61.106 57.895 0.50 0.00 0.00 4.08
3594 3857 8.378172 ACTGGACATCCATATAATTTAACACG 57.622 34.615 0.00 0.00 46.46 4.49
3622 3885 4.021719 GGCATGAAACATAAGGCTGCATAT 60.022 41.667 0.50 0.00 0.00 1.78
3623 3886 3.318839 GGCATGAAACATAAGGCTGCATA 59.681 43.478 0.50 0.00 0.00 3.14
3624 3887 2.101917 GGCATGAAACATAAGGCTGCAT 59.898 45.455 0.50 0.00 0.00 3.96
3627 3890 3.777478 CAAGGCATGAAACATAAGGCTG 58.223 45.455 0.00 0.00 35.14 4.85
3628 3891 2.167075 GCAAGGCATGAAACATAAGGCT 59.833 45.455 0.00 0.00 36.60 4.58
3630 3893 2.159057 GGGCAAGGCATGAAACATAAGG 60.159 50.000 0.00 0.00 0.00 2.69
3708 3981 9.425893 GAATTTATGAATTGTCACACTCATACG 57.574 33.333 7.89 0.00 36.31 3.06
3747 4021 2.151202 TCCAAGATTGTGTTTCGCTCC 58.849 47.619 0.00 0.00 0.00 4.70
3820 4094 4.082845 TCTCAAGAGTCAAGACCTACCAG 58.917 47.826 0.00 0.00 0.00 4.00
4186 4485 7.125659 TCAGACCATAAAAGATCACACATAGGA 59.874 37.037 0.00 0.00 0.00 2.94
4255 4554 0.251341 CCTGCCCAAAAGTGTAGCCT 60.251 55.000 0.00 0.00 0.00 4.58
4286 4585 6.970484 AGTGCTTGTAAAAGGAACAATAGTG 58.030 36.000 0.00 0.00 36.33 2.74
4290 4589 8.816640 CAAATAGTGCTTGTAAAAGGAACAAT 57.183 30.769 0.00 0.00 36.33 2.71
4323 4624 6.305693 AGAATGAACAAAGTACAACTCAGC 57.694 37.500 0.00 0.00 0.00 4.26
4404 4710 0.461548 CTAACTGATGAGCCCGAGCA 59.538 55.000 0.00 0.00 43.56 4.26
4407 4713 3.069586 CCATAACTAACTGATGAGCCCGA 59.930 47.826 0.00 0.00 0.00 5.14
4425 4731 4.202890 TGAGCCCAGTTATATCCCTCCATA 60.203 45.833 0.00 0.00 0.00 2.74
4462 4768 8.940768 AGAAATCAGCTGAAGTATCTAAAGTC 57.059 34.615 22.50 3.90 0.00 3.01
4468 4774 6.432162 TGCAAAAGAAATCAGCTGAAGTATCT 59.568 34.615 22.50 17.53 0.00 1.98
4469 4775 6.615088 TGCAAAAGAAATCAGCTGAAGTATC 58.385 36.000 22.50 15.62 0.00 2.24
4470 4776 6.579666 TGCAAAAGAAATCAGCTGAAGTAT 57.420 33.333 22.50 5.87 0.00 2.12
4471 4777 6.389830 TTGCAAAAGAAATCAGCTGAAGTA 57.610 33.333 22.50 0.00 0.00 2.24
4472 4778 4.924305 TGCAAAAGAAATCAGCTGAAGT 57.076 36.364 22.50 11.62 0.00 3.01
4473 4779 4.150098 GCTTGCAAAAGAAATCAGCTGAAG 59.850 41.667 22.50 9.81 0.00 3.02
4474 4780 4.053295 GCTTGCAAAAGAAATCAGCTGAA 58.947 39.130 22.50 4.23 0.00 3.02
4476 4782 3.386486 TGCTTGCAAAAGAAATCAGCTG 58.614 40.909 7.63 7.63 0.00 4.24
4477 4783 3.738830 TGCTTGCAAAAGAAATCAGCT 57.261 38.095 0.00 0.00 0.00 4.24
4478 4784 6.091713 ACATATTGCTTGCAAAAGAAATCAGC 59.908 34.615 12.17 0.00 30.82 4.26
4479 4785 7.591006 ACATATTGCTTGCAAAAGAAATCAG 57.409 32.000 12.17 0.00 30.82 2.90
4480 4786 7.966246 AACATATTGCTTGCAAAAGAAATCA 57.034 28.000 12.17 0.00 30.82 2.57
4481 4787 9.910511 CATAACATATTGCTTGCAAAAGAAATC 57.089 29.630 12.17 0.00 30.82 2.17
4482 4788 9.656040 TCATAACATATTGCTTGCAAAAGAAAT 57.344 25.926 12.17 0.00 32.87 2.17
4483 4789 9.656040 ATCATAACATATTGCTTGCAAAAGAAA 57.344 25.926 12.17 0.00 0.00 2.52
4505 4816 8.314021 TCCTGTATATGAACAGCGAATAATCAT 58.686 33.333 0.71 0.00 44.56 2.45
4634 4945 2.239400 AGTGAACTCGTGATCACCTGA 58.761 47.619 20.03 11.30 44.02 3.86
4673 4984 9.010029 TGGACCAAATAACAAAGAGAAAGTATC 57.990 33.333 0.00 0.00 0.00 2.24
4674 4985 8.934023 TGGACCAAATAACAAAGAGAAAGTAT 57.066 30.769 0.00 0.00 0.00 2.12
4675 4986 8.792633 CATGGACCAAATAACAAAGAGAAAGTA 58.207 33.333 0.00 0.00 0.00 2.24
4678 4989 6.518200 GCCATGGACCAAATAACAAAGAGAAA 60.518 38.462 18.40 0.00 0.00 2.52
4688 4999 2.455557 CCACAGCCATGGACCAAATAA 58.544 47.619 18.40 0.00 43.02 1.40
4696 5007 0.466739 GATGATGCCACAGCCATGGA 60.467 55.000 18.40 0.00 43.02 3.41
4749 5068 4.772100 AGCTTTACAGTAAAATGGGTGCAT 59.228 37.500 7.18 0.00 0.00 3.96
4750 5069 4.148838 AGCTTTACAGTAAAATGGGTGCA 58.851 39.130 7.18 0.00 0.00 4.57
4751 5070 4.783764 AGCTTTACAGTAAAATGGGTGC 57.216 40.909 7.18 6.01 0.00 5.01
4753 5072 6.775708 TCAGTAGCTTTACAGTAAAATGGGT 58.224 36.000 7.18 4.40 0.00 4.51
4754 5073 7.681939 TTCAGTAGCTTTACAGTAAAATGGG 57.318 36.000 7.18 0.00 0.00 4.00
4755 5074 8.564574 TGTTTCAGTAGCTTTACAGTAAAATGG 58.435 33.333 7.18 0.00 0.00 3.16
4758 5077 9.332502 TGATGTTTCAGTAGCTTTACAGTAAAA 57.667 29.630 7.18 0.00 0.00 1.52
4759 5078 8.896320 TGATGTTTCAGTAGCTTTACAGTAAA 57.104 30.769 5.61 5.61 0.00 2.01
4829 5274 9.784531 CAACATGAGGAACCTATTTCTGTATAT 57.215 33.333 0.00 0.00 34.26 0.86
4834 5279 5.392380 GCACAACATGAGGAACCTATTTCTG 60.392 44.000 0.00 0.00 34.26 3.02
4835 5280 4.702131 GCACAACATGAGGAACCTATTTCT 59.298 41.667 0.00 0.00 34.26 2.52
4904 5353 1.814394 TGGCTCAAACTGCAGCAATAG 59.186 47.619 15.27 7.98 37.38 1.73
4910 5359 2.633509 GGGCTGGCTCAAACTGCAG 61.634 63.158 13.48 13.48 34.89 4.41
4948 5619 2.115427 TCAGGTGTTCTCCTTGTCACA 58.885 47.619 0.00 0.00 35.37 3.58
5098 5769 1.623311 GGCCAATTTTACACAGGGCTT 59.377 47.619 0.00 0.00 41.12 4.35
5135 5806 3.603532 TCAGGATAGCAGCAGTCTTTTG 58.396 45.455 0.00 0.00 0.00 2.44
5139 5810 2.568956 TGTTTCAGGATAGCAGCAGTCT 59.431 45.455 0.00 0.00 0.00 3.24
5149 5820 7.596494 CATGAAGCTTCTTTTGTTTCAGGATA 58.404 34.615 26.09 1.33 32.95 2.59
5402 6079 8.886719 TGTTCTCTCTGCATGTAATTTCTTATG 58.113 33.333 0.00 0.00 0.00 1.90
5488 6173 6.940298 AGCAGCAACTTAACTAAGGTTTATGA 59.060 34.615 0.00 0.00 37.62 2.15
5492 6177 6.544564 TGTTAGCAGCAACTTAACTAAGGTTT 59.455 34.615 0.00 0.00 37.62 3.27
5528 6213 3.122948 CGTGATCCACTTAAGAAACACCG 59.877 47.826 10.09 0.00 31.34 4.94
5529 6214 4.062991 ACGTGATCCACTTAAGAAACACC 58.937 43.478 10.09 0.00 31.34 4.16
5539 6224 1.676014 GCCTAAGCACGTGATCCACTT 60.676 52.381 22.23 14.71 39.53 3.16
5552 6237 6.284459 AGTTAGATGTATCAAGTGCCTAAGC 58.716 40.000 0.00 0.00 40.48 3.09
5562 6247 8.610035 CGTGTACACTAGAGTTAGATGTATCAA 58.390 37.037 23.01 0.00 31.90 2.57
5603 6289 2.660612 CGCCGTAACACCGAACACC 61.661 63.158 0.00 0.00 0.00 4.16
5604 6290 2.660612 CCGCCGTAACACCGAACAC 61.661 63.158 0.00 0.00 0.00 3.32
5617 6303 4.619227 AGTGTGAACCCACCGCCG 62.619 66.667 0.00 0.00 42.53 6.46
5681 6373 0.259647 CATGAAAGGGAGGGGCATCA 59.740 55.000 0.00 0.00 0.00 3.07
5768 6460 0.884704 GAAGGCAGCGTTCCACTTCA 60.885 55.000 15.71 0.00 37.92 3.02
5781 6473 2.283894 TCGGCAGAGGAGAAGGCA 60.284 61.111 0.00 0.00 0.00 4.75
5893 6585 5.244402 CACCCATGGCATGTCATTTATATGT 59.756 40.000 24.80 0.00 33.34 2.29
5905 6597 1.152819 CTCTCCCACCCATGGCATG 60.153 63.158 20.56 20.56 45.76 4.06
5906 6598 1.308128 TCTCTCCCACCCATGGCAT 60.308 57.895 6.09 0.00 45.76 4.40
5907 6599 1.997311 CTCTCTCCCACCCATGGCA 60.997 63.158 6.09 0.00 45.76 4.92
5949 6661 1.123928 GCATCTACCAGCCCTACACT 58.876 55.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.