Multiple sequence alignment - TraesCS4B01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G283200 chr4B 100.000 5032 0 0 1 5032 566593535 566598566 0.000000e+00 9293.0
1 TraesCS4B01G283200 chr4B 86.765 68 7 2 170 236 103553439 103553505 1.940000e-09 75.0
2 TraesCS4B01G283200 chr4D 91.704 4436 180 70 361 4696 453219042 453223389 0.000000e+00 5980.0
3 TraesCS4B01G283200 chr4D 89.344 488 23 12 4559 5032 453223392 453223864 2.020000e-163 586.0
4 TraesCS4B01G283200 chr4D 100.000 28 0 0 115 142 50772734 50772707 9.000000e-03 52.8
5 TraesCS4B01G283200 chr4A 91.454 4119 205 58 361 4429 14029046 14025025 0.000000e+00 5520.0
6 TraesCS4B01G283200 chr4A 89.691 485 21 12 4562 5032 14024529 14024060 4.340000e-165 592.0
7 TraesCS4B01G283200 chr4A 93.878 49 2 1 236 283 14030088 14030040 6.990000e-09 73.1
8 TraesCS4B01G283200 chr5D 81.893 243 37 7 1 238 361674300 361674060 1.110000e-46 198.0
9 TraesCS4B01G283200 chr5A 83.495 206 26 6 3 201 68970504 68970300 8.600000e-43 185.0
10 TraesCS4B01G283200 chr6B 79.747 237 37 8 2 234 553049539 553049768 1.450000e-35 161.0
11 TraesCS4B01G283200 chr1A 76.619 278 49 10 3035 3301 8046837 8047109 6.790000e-29 139.0
12 TraesCS4B01G283200 chr1A 82.222 135 18 6 1 131 444254353 444254485 1.480000e-20 111.0
13 TraesCS4B01G283200 chr1A 91.429 70 5 1 172 240 6870523 6870592 1.490000e-15 95.3
14 TraesCS4B01G283200 chr6A 76.395 233 32 11 17 238 553740123 553739903 2.480000e-18 104.0
15 TraesCS4B01G283200 chr1B 72.887 284 67 6 3035 3310 632421240 632420959 6.940000e-14 89.8
16 TraesCS4B01G283200 chr1B 100.000 29 0 0 114 142 403185741 403185769 3.000000e-03 54.7
17 TraesCS4B01G283200 chr5B 95.455 44 1 1 3 46 531630298 531630256 9.040000e-08 69.4
18 TraesCS4B01G283200 chr7B 100.000 29 0 0 114 142 13131341 13131313 3.000000e-03 54.7
19 TraesCS4B01G283200 chr6D 100.000 28 0 0 115 142 23078278 23078251 9.000000e-03 52.8
20 TraesCS4B01G283200 chr6D 100.000 28 0 0 115 142 314213911 314213938 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G283200 chr4B 566593535 566598566 5031 False 9293.0 9293 100.000000 1 5032 1 chr4B.!!$F2 5031
1 TraesCS4B01G283200 chr4D 453219042 453223864 4822 False 3283.0 5980 90.524000 361 5032 2 chr4D.!!$F1 4671
2 TraesCS4B01G283200 chr4A 14024060 14030088 6028 True 2061.7 5520 91.674333 236 5032 3 chr4A.!!$R1 4796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.030235 GGTGAACAAGCCGACCAAAC 59.970 55.000 0.00 0.00 0.00 2.93 F
180 181 0.316689 GTGAACAAGCCGACCAAACG 60.317 55.000 0.00 0.00 0.00 3.60 F
811 1761 0.662970 GCTAGCTTCCTGATCGAGCG 60.663 60.000 7.70 0.00 41.19 5.03 F
2143 3143 0.036022 AGCTCTTCCTGCAAGTGTCC 59.964 55.000 0.00 0.00 33.27 4.02 F
2250 3251 1.005137 CAACGGTTGTGTTGCATTTGC 60.005 47.619 12.66 0.00 42.34 3.68 F
2997 4003 0.035176 GAGGCCATGGAGCTGATCTC 59.965 60.000 18.40 6.07 41.15 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2912 0.037303 ACCTCTCGTCGAAGGTGGTA 59.963 55.000 20.99 0.0 32.77 3.25 R
2056 3056 1.802636 GGTGTTGATGTCCATGGCG 59.197 57.895 6.96 0.0 0.00 5.69 R
2710 3716 0.667993 CTCTCCAGGTGCTCTCGATC 59.332 60.000 0.00 0.0 0.00 3.69 R
2965 3971 0.036164 TGGCCTCACTGCGTACATTT 59.964 50.000 3.32 0.0 0.00 2.32 R
3598 4624 0.109086 CAGTCGATGCTCCTCACGTT 60.109 55.000 0.00 0.0 0.00 3.99 R
4904 6324 1.098050 GGCTCATGTAAGCTGGTTGG 58.902 55.000 6.38 0.0 42.13 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.751542 ATATTTTGTTTGAATTACGTGAACCAA 57.248 25.926 0.00 0.00 0.00 3.67
50 51 7.513190 TTTTGTTTGAATTACGTGAACCAAG 57.487 32.000 0.00 0.00 0.00 3.61
51 52 6.438259 TTGTTTGAATTACGTGAACCAAGA 57.562 33.333 0.00 0.00 0.00 3.02
52 53 5.812652 TGTTTGAATTACGTGAACCAAGAC 58.187 37.500 0.00 1.99 0.00 3.01
53 54 5.209977 GTTTGAATTACGTGAACCAAGACC 58.790 41.667 0.00 0.00 0.00 3.85
54 55 4.074627 TGAATTACGTGAACCAAGACCA 57.925 40.909 0.00 0.00 0.00 4.02
55 56 4.452825 TGAATTACGTGAACCAAGACCAA 58.547 39.130 0.00 0.00 0.00 3.67
56 57 4.882427 TGAATTACGTGAACCAAGACCAAA 59.118 37.500 0.00 0.00 0.00 3.28
57 58 5.533154 TGAATTACGTGAACCAAGACCAAAT 59.467 36.000 0.00 0.00 0.00 2.32
58 59 6.039941 TGAATTACGTGAACCAAGACCAAATT 59.960 34.615 0.00 0.00 0.00 1.82
59 60 5.838531 TTACGTGAACCAAGACCAAATTT 57.161 34.783 0.00 0.00 0.00 1.82
60 61 4.729227 ACGTGAACCAAGACCAAATTTT 57.271 36.364 0.00 0.00 0.00 1.82
61 62 4.678622 ACGTGAACCAAGACCAAATTTTC 58.321 39.130 0.00 0.00 0.00 2.29
62 63 4.158764 ACGTGAACCAAGACCAAATTTTCA 59.841 37.500 0.00 0.00 0.00 2.69
63 64 5.163457 ACGTGAACCAAGACCAAATTTTCAT 60.163 36.000 0.00 0.00 0.00 2.57
64 65 6.039941 ACGTGAACCAAGACCAAATTTTCATA 59.960 34.615 0.00 0.00 0.00 2.15
65 66 7.090173 CGTGAACCAAGACCAAATTTTCATAT 58.910 34.615 0.00 0.00 0.00 1.78
66 67 7.062138 CGTGAACCAAGACCAAATTTTCATATG 59.938 37.037 0.00 0.00 0.00 1.78
67 68 7.872483 GTGAACCAAGACCAAATTTTCATATGT 59.128 33.333 1.90 0.00 0.00 2.29
68 69 8.428063 TGAACCAAGACCAAATTTTCATATGTT 58.572 29.630 1.90 0.00 0.00 2.71
69 70 9.271828 GAACCAAGACCAAATTTTCATATGTTT 57.728 29.630 1.90 0.00 0.00 2.83
70 71 8.606040 ACCAAGACCAAATTTTCATATGTTTG 57.394 30.769 1.90 6.13 0.00 2.93
71 72 7.173047 ACCAAGACCAAATTTTCATATGTTTGC 59.827 33.333 1.90 0.00 31.87 3.68
72 73 7.172875 CCAAGACCAAATTTTCATATGTTTGCA 59.827 33.333 1.90 0.00 31.87 4.08
73 74 8.557864 CAAGACCAAATTTTCATATGTTTGCAA 58.442 29.630 1.90 0.00 31.87 4.08
74 75 8.674263 AGACCAAATTTTCATATGTTTGCAAA 57.326 26.923 8.05 8.05 31.87 3.68
75 76 9.118300 AGACCAAATTTTCATATGTTTGCAAAA 57.882 25.926 14.67 5.00 31.87 2.44
76 77 9.727627 GACCAAATTTTCATATGTTTGCAAAAA 57.272 25.926 14.67 9.42 31.87 1.94
77 78 9.733219 ACCAAATTTTCATATGTTTGCAAAAAG 57.267 25.926 14.67 0.00 31.87 2.27
78 79 9.947669 CCAAATTTTCATATGTTTGCAAAAAGA 57.052 25.926 14.67 6.24 31.87 2.52
80 81 9.667989 AAATTTTCATATGTTTGCAAAAAGAGC 57.332 25.926 14.67 1.27 0.00 4.09
81 82 8.611654 ATTTTCATATGTTTGCAAAAAGAGCT 57.388 26.923 14.67 0.00 0.00 4.09
82 83 9.709495 ATTTTCATATGTTTGCAAAAAGAGCTA 57.291 25.926 14.67 0.00 0.00 3.32
83 84 9.539825 TTTTCATATGTTTGCAAAAAGAGCTAA 57.460 25.926 14.67 0.00 0.00 3.09
84 85 9.539825 TTTCATATGTTTGCAAAAAGAGCTAAA 57.460 25.926 14.67 5.41 0.00 1.85
85 86 9.539825 TTCATATGTTTGCAAAAAGAGCTAAAA 57.460 25.926 14.67 0.00 0.00 1.52
86 87 9.539825 TCATATGTTTGCAAAAAGAGCTAAAAA 57.460 25.926 14.67 0.00 0.00 1.94
89 90 7.840342 TGTTTGCAAAAAGAGCTAAAAATGA 57.160 28.000 14.67 0.00 0.00 2.57
90 91 8.436046 TGTTTGCAAAAAGAGCTAAAAATGAT 57.564 26.923 14.67 0.00 0.00 2.45
91 92 8.550376 TGTTTGCAAAAAGAGCTAAAAATGATC 58.450 29.630 14.67 0.00 0.00 2.92
92 93 6.932901 TGCAAAAAGAGCTAAAAATGATCG 57.067 33.333 0.00 0.00 0.00 3.69
93 94 5.345741 TGCAAAAAGAGCTAAAAATGATCGC 59.654 36.000 0.00 0.00 0.00 4.58
94 95 5.497597 GCAAAAAGAGCTAAAAATGATCGCG 60.498 40.000 0.00 0.00 0.00 5.87
95 96 3.951979 AAGAGCTAAAAATGATCGCGG 57.048 42.857 6.13 0.00 0.00 6.46
96 97 2.213499 AGAGCTAAAAATGATCGCGGG 58.787 47.619 6.13 0.00 0.00 6.13
97 98 0.663153 AGCTAAAAATGATCGCGGGC 59.337 50.000 6.13 0.00 0.00 6.13
98 99 0.317854 GCTAAAAATGATCGCGGGCC 60.318 55.000 6.13 0.00 0.00 5.80
99 100 0.041312 CTAAAAATGATCGCGGGCCG 60.041 55.000 24.35 24.35 38.61 6.13
100 101 1.440938 TAAAAATGATCGCGGGCCGG 61.441 55.000 29.48 17.85 37.59 6.13
118 119 0.171231 GGCCTTGAGGACGAAAATGC 59.829 55.000 0.06 0.00 37.39 3.56
119 120 0.179189 GCCTTGAGGACGAAAATGCG 60.179 55.000 0.06 0.00 37.39 4.73
150 151 4.160635 CGCACGGCCGATCCAAAC 62.161 66.667 35.90 11.20 34.01 2.93
151 152 3.053291 GCACGGCCGATCCAAACA 61.053 61.111 35.90 0.00 34.01 2.83
152 153 2.867472 CACGGCCGATCCAAACAC 59.133 61.111 35.90 0.00 34.01 3.32
153 154 2.359478 ACGGCCGATCCAAACACC 60.359 61.111 35.90 0.00 34.01 4.16
154 155 2.359354 CGGCCGATCCAAACACCA 60.359 61.111 24.07 0.00 34.01 4.17
155 156 1.969064 CGGCCGATCCAAACACCAA 60.969 57.895 24.07 0.00 34.01 3.67
156 157 1.519751 CGGCCGATCCAAACACCAAA 61.520 55.000 24.07 0.00 34.01 3.28
157 158 0.676736 GGCCGATCCAAACACCAAAA 59.323 50.000 0.00 0.00 34.01 2.44
158 159 1.336795 GGCCGATCCAAACACCAAAAG 60.337 52.381 0.00 0.00 34.01 2.27
159 160 1.336795 GCCGATCCAAACACCAAAAGG 60.337 52.381 0.00 0.00 0.00 3.11
160 161 1.272212 CCGATCCAAACACCAAAAGGG 59.728 52.381 0.00 0.00 44.81 3.95
161 162 1.272212 CGATCCAAACACCAAAAGGGG 59.728 52.381 0.00 0.00 42.91 4.79
162 163 2.325484 GATCCAAACACCAAAAGGGGT 58.675 47.619 0.00 0.00 43.56 4.95
170 171 1.119684 ACCAAAAGGGGTGAACAAGC 58.880 50.000 0.00 0.00 40.44 4.01
171 172 0.392706 CCAAAAGGGGTGAACAAGCC 59.607 55.000 0.00 0.00 46.50 4.35
176 177 2.112297 GGGTGAACAAGCCGACCA 59.888 61.111 0.00 0.00 36.51 4.02
177 178 1.527380 GGGTGAACAAGCCGACCAA 60.527 57.895 0.00 0.00 36.51 3.67
178 179 1.104577 GGGTGAACAAGCCGACCAAA 61.105 55.000 0.00 0.00 36.51 3.28
179 180 0.030235 GGTGAACAAGCCGACCAAAC 59.970 55.000 0.00 0.00 0.00 2.93
180 181 0.316689 GTGAACAAGCCGACCAAACG 60.317 55.000 0.00 0.00 0.00 3.60
191 192 2.501881 CGACCAAACGGATAAAAAGCG 58.498 47.619 0.00 0.00 0.00 4.68
192 193 2.726681 CGACCAAACGGATAAAAAGCGG 60.727 50.000 0.00 0.00 0.00 5.52
193 194 2.485038 GACCAAACGGATAAAAAGCGGA 59.515 45.455 0.00 0.00 0.00 5.54
194 195 2.227149 ACCAAACGGATAAAAAGCGGAC 59.773 45.455 0.00 0.00 0.00 4.79
195 196 2.226912 CCAAACGGATAAAAAGCGGACA 59.773 45.455 0.00 0.00 0.00 4.02
196 197 3.304794 CCAAACGGATAAAAAGCGGACAA 60.305 43.478 0.00 0.00 0.00 3.18
197 198 4.291783 CAAACGGATAAAAAGCGGACAAA 58.708 39.130 0.00 0.00 0.00 2.83
198 199 4.571372 AACGGATAAAAAGCGGACAAAA 57.429 36.364 0.00 0.00 0.00 2.44
199 200 3.892522 ACGGATAAAAAGCGGACAAAAC 58.107 40.909 0.00 0.00 0.00 2.43
200 201 2.906161 CGGATAAAAAGCGGACAAAACG 59.094 45.455 0.00 0.00 0.00 3.60
207 208 2.247267 CGGACAAAACGCACGTCC 59.753 61.111 0.00 0.00 44.79 4.79
208 209 2.247267 GGACAAAACGCACGTCCG 59.753 61.111 0.00 0.00 39.86 4.79
209 210 2.527867 GGACAAAACGCACGTCCGT 61.528 57.895 0.00 0.00 44.41 4.69
215 216 2.509786 ACGCACGTCCGTTTGTGT 60.510 55.556 0.00 0.00 38.47 3.72
216 217 2.244382 CGCACGTCCGTTTGTGTC 59.756 61.111 0.00 0.00 38.36 3.67
217 218 2.244382 GCACGTCCGTTTGTGTCG 59.756 61.111 0.00 0.00 38.36 4.35
219 220 2.963320 ACGTCCGTTTGTGTCGGC 60.963 61.111 0.00 0.00 46.49 5.54
220 221 4.054455 CGTCCGTTTGTGTCGGCG 62.054 66.667 0.00 0.00 46.49 6.46
221 222 4.364409 GTCCGTTTGTGTCGGCGC 62.364 66.667 0.00 0.00 46.49 6.53
224 225 3.773630 CGTTTGTGTCGGCGCGAT 61.774 61.111 12.10 0.00 38.42 4.58
225 226 2.202171 GTTTGTGTCGGCGCGATG 60.202 61.111 12.10 0.00 38.42 3.84
226 227 3.418913 TTTGTGTCGGCGCGATGG 61.419 61.111 12.10 0.00 38.42 3.51
227 228 3.867700 TTTGTGTCGGCGCGATGGA 62.868 57.895 12.10 0.00 38.42 3.41
228 229 4.794439 TGTGTCGGCGCGATGGAG 62.794 66.667 12.10 0.00 38.42 3.86
229 230 4.796231 GTGTCGGCGCGATGGAGT 62.796 66.667 12.10 0.00 38.42 3.85
230 231 4.063967 TGTCGGCGCGATGGAGTT 62.064 61.111 12.10 0.00 38.42 3.01
231 232 3.554692 GTCGGCGCGATGGAGTTG 61.555 66.667 12.10 0.00 38.42 3.16
234 235 3.567797 GGCGCGATGGAGTTGCTC 61.568 66.667 12.10 0.00 34.87 4.26
235 236 2.510238 GCGCGATGGAGTTGCTCT 60.510 61.111 12.10 0.00 34.87 4.09
236 237 1.226974 GCGCGATGGAGTTGCTCTA 60.227 57.895 12.10 0.00 34.87 2.43
237 238 0.806102 GCGCGATGGAGTTGCTCTAA 60.806 55.000 12.10 0.00 34.87 2.10
238 239 0.924090 CGCGATGGAGTTGCTCTAAC 59.076 55.000 0.00 0.00 39.65 2.34
271 272 5.231702 TGCTCCATCTCAATGCATGTATA 57.768 39.130 0.00 0.00 0.00 1.47
283 324 9.888878 CTCAATGCATGTATATTTGACCTAAAG 57.111 33.333 0.00 0.00 0.00 1.85
305 346 8.723942 AAAGGCATGTTTAGTTAGTCTGATAG 57.276 34.615 0.00 0.00 0.00 2.08
313 354 9.569167 TGTTTAGTTAGTCTGATAGATTTGACG 57.431 33.333 0.00 0.00 34.92 4.35
332 373 7.867445 TTGACGATTCTTAAAAAGCATTTCC 57.133 32.000 0.00 0.00 37.28 3.13
339 380 6.976934 TCTTAAAAAGCATTTCCTGGTCTT 57.023 33.333 0.00 0.00 37.28 3.01
348 389 4.400567 GCATTTCCTGGTCTTCATTAGCTT 59.599 41.667 0.00 0.00 0.00 3.74
350 391 3.634397 TCCTGGTCTTCATTAGCTTGG 57.366 47.619 0.00 0.00 0.00 3.61
352 393 2.025887 CCTGGTCTTCATTAGCTTGGGT 60.026 50.000 0.00 0.00 0.00 4.51
353 394 3.562176 CCTGGTCTTCATTAGCTTGGGTT 60.562 47.826 0.00 0.00 0.00 4.11
355 396 5.249780 TGGTCTTCATTAGCTTGGGTTAA 57.750 39.130 0.00 0.00 0.00 2.01
356 397 5.636123 TGGTCTTCATTAGCTTGGGTTAAA 58.364 37.500 0.00 0.00 0.00 1.52
357 398 6.071984 TGGTCTTCATTAGCTTGGGTTAAAA 58.928 36.000 0.00 0.00 0.00 1.52
358 399 6.551601 TGGTCTTCATTAGCTTGGGTTAAAAA 59.448 34.615 0.00 0.00 0.00 1.94
458 1389 6.098982 TGGTTTTCCCAATGTGTTTCTAATGT 59.901 34.615 0.00 0.00 41.50 2.71
472 1403 6.127758 TGTTTCTAATGTCATTGGCATGTACC 60.128 38.462 4.17 0.00 0.00 3.34
478 1409 4.343231 TGTCATTGGCATGTACCTTGATT 58.657 39.130 0.00 0.00 0.00 2.57
496 1432 1.507140 TTAGGCCGGATGAGGTTGAT 58.493 50.000 5.05 0.00 0.00 2.57
499 1435 2.537560 GCCGGATGAGGTTGATGCG 61.538 63.158 5.05 0.00 34.73 4.73
542 1479 0.808125 CCATTCATTCCGCCGTCAAA 59.192 50.000 0.00 0.00 0.00 2.69
544 1481 2.352225 CCATTCATTCCGCCGTCAAAAA 60.352 45.455 0.00 0.00 0.00 1.94
554 1491 2.159881 CGCCGTCAAAAAGCTACAGTAC 60.160 50.000 0.00 0.00 0.00 2.73
555 1492 3.064931 GCCGTCAAAAAGCTACAGTACT 58.935 45.455 0.00 0.00 0.00 2.73
556 1493 4.240096 GCCGTCAAAAAGCTACAGTACTA 58.760 43.478 0.00 0.00 0.00 1.82
557 1494 4.326548 GCCGTCAAAAAGCTACAGTACTAG 59.673 45.833 0.00 0.00 0.00 2.57
558 1495 5.467705 CCGTCAAAAAGCTACAGTACTAGT 58.532 41.667 0.00 0.00 0.00 2.57
705 1651 1.423794 TTCGGGGGCCAGACTCTTTT 61.424 55.000 4.39 0.00 0.00 2.27
799 1749 8.443953 AAAAAGATCATTTCGATAGCTAGCTT 57.556 30.769 24.88 10.88 33.17 3.74
811 1761 0.662970 GCTAGCTTCCTGATCGAGCG 60.663 60.000 7.70 0.00 41.19 5.03
946 1912 1.425448 AGGCAGGAAGTAGCTGGTTTT 59.575 47.619 0.00 0.00 0.00 2.43
1005 1971 1.156736 GTTCTACACCGCAGCAACAT 58.843 50.000 0.00 0.00 0.00 2.71
1023 1993 2.758979 ACATCGATCGTTTACCCTCTGT 59.241 45.455 15.94 3.66 0.00 3.41
1045 2015 1.028130 GTACCTAGCCCGTACCTGAC 58.972 60.000 0.00 0.00 31.72 3.51
1054 2024 4.855596 GTACCTGACGACGGTGAC 57.144 61.111 0.00 0.00 35.98 3.67
1055 2025 1.211190 GTACCTGACGACGGTGACC 59.789 63.158 0.00 0.00 35.98 4.02
1056 2026 1.073722 TACCTGACGACGGTGACCT 59.926 57.895 0.00 0.00 35.98 3.85
1342 2335 4.077184 GGCGGGTGGTCACGATCA 62.077 66.667 0.00 0.00 43.98 2.92
1451 2444 6.562270 CGTTTATGTCGCCATCTTCATAGTTC 60.562 42.308 0.00 0.00 32.29 3.01
1475 2468 1.869767 CTGCCTCCACTTGATTATCGC 59.130 52.381 0.00 0.00 0.00 4.58
1479 2472 1.869767 CTCCACTTGATTATCGCTGCC 59.130 52.381 0.00 0.00 0.00 4.85
1480 2473 1.209261 TCCACTTGATTATCGCTGCCA 59.791 47.619 0.00 0.00 0.00 4.92
1637 2630 5.064452 CAGAGACTGCAAAATGAGGTATGAC 59.936 44.000 0.00 0.00 0.00 3.06
1645 2638 7.620880 TGCAAAATGAGGTATGACTACTAACT 58.379 34.615 0.00 0.00 0.00 2.24
1829 2829 2.256158 CCGTAGTTGGCGACGTCA 59.744 61.111 17.16 0.00 41.12 4.35
1835 2835 2.599281 TTGGCGACGTCAGGGAGA 60.599 61.111 17.16 0.00 0.00 3.71
1912 2912 2.746277 GTCAACTCCGCCGCCAAT 60.746 61.111 0.00 0.00 0.00 3.16
2001 3001 2.751259 TGCATTGCTCCAAGATTCAGTC 59.249 45.455 10.49 0.00 0.00 3.51
2013 3013 2.828520 AGATTCAGTCACTCCATCGTGT 59.171 45.455 0.00 0.00 36.33 4.49
2014 3014 2.438868 TTCAGTCACTCCATCGTGTG 57.561 50.000 0.00 0.00 36.33 3.82
2015 3015 1.616159 TCAGTCACTCCATCGTGTGA 58.384 50.000 0.00 0.00 39.54 3.58
2018 3018 2.476619 CAGTCACTCCATCGTGTGAAAC 59.523 50.000 0.00 0.00 42.47 2.78
2056 3056 7.933577 TCTGAATATTCAACCAGGTATGATGTC 59.066 37.037 18.47 0.00 36.64 3.06
2143 3143 0.036022 AGCTCTTCCTGCAAGTGTCC 59.964 55.000 0.00 0.00 33.27 4.02
2247 3248 1.107114 TCCAACGGTTGTGTTGCATT 58.893 45.000 18.73 0.00 46.14 3.56
2248 3249 1.478510 TCCAACGGTTGTGTTGCATTT 59.521 42.857 18.73 0.00 46.14 2.32
2249 3250 1.592081 CCAACGGTTGTGTTGCATTTG 59.408 47.619 18.73 0.00 46.14 2.32
2250 3251 1.005137 CAACGGTTGTGTTGCATTTGC 60.005 47.619 12.66 0.00 42.34 3.68
2490 3491 4.472496 TCTCTCAGGAGATGAAGGATCTG 58.528 47.826 0.00 0.00 41.91 2.90
2557 3563 1.444553 GTCTCGGTCTGAAGGTGCG 60.445 63.158 0.00 0.00 0.00 5.34
2593 3599 1.429463 CTGAACGTGCTGGTTACTCC 58.571 55.000 0.00 0.00 0.00 3.85
2704 3710 2.436646 GTGGTCACCATCAGGCCG 60.437 66.667 0.00 0.00 39.06 6.13
2710 3716 4.457496 ACCATCAGGCCGAGCGTG 62.457 66.667 10.95 10.95 44.42 5.34
2789 3795 3.168963 CGTGAGTGTAGAATGTGGTACG 58.831 50.000 0.00 0.00 0.00 3.67
2818 3824 5.300034 TGCAGAGTTCATCAACATTCTGTTT 59.700 36.000 1.66 0.00 38.77 2.83
2834 3840 3.511146 TCTGTTTCTGATTTCCATTGGCC 59.489 43.478 0.00 0.00 0.00 5.36
2850 3856 1.891811 TGGCCAATTGATTTGCTCGAA 59.108 42.857 0.61 0.00 33.73 3.71
2929 3935 4.832608 GATCCGGCCGGCGTTCTT 62.833 66.667 39.89 18.42 34.68 2.52
2944 3950 2.092211 CGTTCTTGACGTGGTAATCAGC 59.908 50.000 0.00 0.00 46.49 4.26
2948 3954 2.554806 TGACGTGGTAATCAGCTACG 57.445 50.000 0.00 1.56 40.30 3.51
2954 3960 2.544267 GTGGTAATCAGCTACGCATTCC 59.456 50.000 0.00 0.00 0.00 3.01
2957 3963 3.006537 GGTAATCAGCTACGCATTCCCTA 59.993 47.826 0.00 0.00 0.00 3.53
2959 3965 4.357918 AATCAGCTACGCATTCCCTAAT 57.642 40.909 0.00 0.00 0.00 1.73
2960 3966 3.838244 TCAGCTACGCATTCCCTAATT 57.162 42.857 0.00 0.00 0.00 1.40
2963 3969 5.297547 TCAGCTACGCATTCCCTAATTAAG 58.702 41.667 0.00 0.00 0.00 1.85
2965 3971 3.813166 GCTACGCATTCCCTAATTAAGCA 59.187 43.478 0.00 0.00 0.00 3.91
2966 3972 4.274950 GCTACGCATTCCCTAATTAAGCAA 59.725 41.667 0.00 0.00 0.00 3.91
2968 3974 5.852282 ACGCATTCCCTAATTAAGCAAAT 57.148 34.783 0.00 0.00 0.00 2.32
2969 3975 5.591099 ACGCATTCCCTAATTAAGCAAATG 58.409 37.500 0.00 0.00 32.68 2.32
2970 3976 5.127031 ACGCATTCCCTAATTAAGCAAATGT 59.873 36.000 0.00 0.00 32.38 2.71
2971 3977 6.320164 ACGCATTCCCTAATTAAGCAAATGTA 59.680 34.615 0.00 0.00 32.38 2.29
2972 3978 6.636850 CGCATTCCCTAATTAAGCAAATGTAC 59.363 38.462 0.00 0.00 32.38 2.90
2973 3979 6.636850 GCATTCCCTAATTAAGCAAATGTACG 59.363 38.462 0.00 0.00 32.38 3.67
2974 3980 5.744666 TCCCTAATTAAGCAAATGTACGC 57.255 39.130 0.00 0.00 0.00 4.42
2997 4003 0.035176 GAGGCCATGGAGCTGATCTC 59.965 60.000 18.40 6.07 41.15 2.75
3003 4009 1.001068 CATGGAGCTGATCTCGCAGAT 59.999 52.381 0.00 0.00 42.82 2.90
3027 4033 3.733443 AATGGCTTTCTTGTTGTGTCC 57.267 42.857 0.00 0.00 0.00 4.02
3417 4423 1.123928 GCATCTACCAGCCCTACACT 58.876 55.000 0.00 0.00 0.00 3.55
3459 4469 1.997311 CTCTCTCCCACCCATGGCA 60.997 63.158 6.09 0.00 45.76 4.92
3460 4470 1.308128 TCTCTCCCACCCATGGCAT 60.308 57.895 6.09 0.00 45.76 4.40
3461 4471 1.152819 CTCTCCCACCCATGGCATG 60.153 63.158 20.56 20.56 45.76 4.06
3473 4499 5.244402 CACCCATGGCATGTCATTTATATGT 59.756 40.000 24.80 0.00 33.34 2.29
3585 4611 2.283894 TCGGCAGAGGAGAAGGCA 60.284 61.111 0.00 0.00 0.00 4.75
3598 4624 0.884704 GAAGGCAGCGTTCCACTTCA 60.885 55.000 15.71 0.00 37.92 3.02
3685 4711 0.259647 CATGAAAGGGAGGGGCATCA 59.740 55.000 0.00 0.00 0.00 3.07
3749 4781 4.619227 AGTGTGAACCCACCGCCG 62.619 66.667 0.00 0.00 42.53 6.46
3762 4794 2.660612 CCGCCGTAACACCGAACAC 61.661 63.158 0.00 0.00 0.00 3.32
3763 4795 2.660612 CGCCGTAACACCGAACACC 61.661 63.158 0.00 0.00 0.00 4.16
3804 4837 8.610035 CGTGTACACTAGAGTTAGATGTATCAA 58.390 37.037 23.01 0.00 31.90 2.57
3814 4847 6.284459 AGTTAGATGTATCAAGTGCCTAAGC 58.716 40.000 0.00 0.00 40.48 3.09
3827 4860 1.676014 GCCTAAGCACGTGATCCACTT 60.676 52.381 22.23 14.71 39.53 3.16
3837 4870 4.062991 ACGTGATCCACTTAAGAAACACC 58.937 43.478 10.09 0.00 31.34 4.16
3838 4871 3.122948 CGTGATCCACTTAAGAAACACCG 59.877 47.826 10.09 0.00 31.34 4.94
3841 4874 5.008316 GTGATCCACTTAAGAAACACCGTTT 59.992 40.000 10.09 0.00 0.00 3.60
3843 4876 3.628487 TCCACTTAAGAAACACCGTTTGG 59.372 43.478 10.09 2.29 42.84 3.28
3874 4907 6.544564 TGTTAGCAGCAACTTAACTAAGGTTT 59.455 34.615 0.00 0.00 37.62 3.27
3878 4911 6.940298 AGCAGCAACTTAACTAAGGTTTATGA 59.060 34.615 0.00 0.00 37.62 2.15
3964 5005 8.886719 TGTTCTCTCTGCATGTAATTTCTTATG 58.113 33.333 0.00 0.00 0.00 1.90
4217 5264 7.596494 CATGAAGCTTCTTTTGTTTCAGGATA 58.404 34.615 26.09 1.33 32.95 2.59
4227 5274 2.568956 TGTTTCAGGATAGCAGCAGTCT 59.431 45.455 0.00 0.00 0.00 3.24
4231 5278 3.603532 TCAGGATAGCAGCAGTCTTTTG 58.396 45.455 0.00 0.00 0.00 2.44
4268 5315 1.623311 GGCCAATTTTACACAGGGCTT 59.377 47.619 0.00 0.00 41.12 4.35
4418 5465 2.115427 TCAGGTGTTCTCCTTGTCACA 58.885 47.619 0.00 0.00 35.37 3.58
4456 5503 2.633509 GGGCTGGCTCAAACTGCAG 61.634 63.158 13.48 13.48 34.89 4.41
4462 5509 1.814394 TGGCTCAAACTGCAGCAATAG 59.186 47.619 15.27 7.98 37.38 1.73
4531 5804 4.702131 GCACAACATGAGGAACCTATTTCT 59.298 41.667 0.00 0.00 34.26 2.52
4532 5805 5.392380 GCACAACATGAGGAACCTATTTCTG 60.392 44.000 0.00 0.00 34.26 3.02
4537 5810 9.784531 CAACATGAGGAACCTATTTCTGTATAT 57.215 33.333 0.00 0.00 34.26 0.86
4605 5878 8.896320 TTTGATGTTTCAGTAGCTTTACAGTA 57.104 30.769 0.00 0.00 32.27 2.74
4606 5879 8.896320 TTGATGTTTCAGTAGCTTTACAGTAA 57.104 30.769 0.00 0.00 32.27 2.24
4607 5880 8.896320 TGATGTTTCAGTAGCTTTACAGTAAA 57.104 30.769 5.61 5.61 0.00 2.01
4608 5881 9.332502 TGATGTTTCAGTAGCTTTACAGTAAAA 57.667 29.630 7.18 0.00 0.00 1.52
4611 5884 8.564574 TGTTTCAGTAGCTTTACAGTAAAATGG 58.435 33.333 7.18 0.00 0.00 3.16
4612 5885 7.681939 TTCAGTAGCTTTACAGTAAAATGGG 57.318 36.000 7.18 0.00 0.00 4.00
4613 5886 6.775708 TCAGTAGCTTTACAGTAAAATGGGT 58.224 36.000 7.18 4.40 0.00 4.51
4614 5887 6.653320 TCAGTAGCTTTACAGTAAAATGGGTG 59.347 38.462 7.18 3.43 0.00 4.61
4615 5888 4.783764 AGCTTTACAGTAAAATGGGTGC 57.216 40.909 7.18 6.01 0.00 5.01
4616 5889 4.148838 AGCTTTACAGTAAAATGGGTGCA 58.851 39.130 7.18 0.00 0.00 4.57
4617 5890 4.772100 AGCTTTACAGTAAAATGGGTGCAT 59.228 37.500 7.18 0.00 0.00 3.96
4658 5931 1.226686 CGTGCCTAGCTGGATGATGC 61.227 60.000 0.00 0.00 38.35 3.91
4670 5951 0.466739 GATGATGCCACAGCCATGGA 60.467 55.000 18.40 0.00 43.02 3.41
4678 5959 2.455557 CCACAGCCATGGACCAAATAA 58.544 47.619 18.40 0.00 43.02 1.40
4732 6147 2.239400 AGTGAACTCGTGATCACCTGA 58.761 47.619 20.03 11.30 44.02 3.86
4861 6276 8.314021 TCCTGTATATGAACAGCGAATAATCAT 58.686 33.333 0.71 0.00 44.56 2.45
4882 6297 9.656040 AATCATAACATATTGCTTGCAAAAGAA 57.344 25.926 12.17 0.00 0.00 2.52
4883 6298 9.656040 ATCATAACATATTGCTTGCAAAAGAAA 57.344 25.926 12.17 0.00 0.00 2.52
4884 6299 9.656040 TCATAACATATTGCTTGCAAAAGAAAT 57.344 25.926 12.17 0.00 32.87 2.17
4885 6300 9.910511 CATAACATATTGCTTGCAAAAGAAATC 57.089 29.630 12.17 0.00 30.82 2.17
4886 6301 7.966246 AACATATTGCTTGCAAAAGAAATCA 57.034 28.000 12.17 0.00 30.82 2.57
4887 6302 7.591006 ACATATTGCTTGCAAAAGAAATCAG 57.409 32.000 12.17 0.00 30.82 2.90
4888 6303 6.091713 ACATATTGCTTGCAAAAGAAATCAGC 59.908 34.615 12.17 0.00 30.82 4.26
4889 6304 3.738830 TGCTTGCAAAAGAAATCAGCT 57.261 38.095 0.00 0.00 0.00 4.24
4890 6305 3.386486 TGCTTGCAAAAGAAATCAGCTG 58.614 40.909 7.63 7.63 0.00 4.24
4891 6306 3.068448 TGCTTGCAAAAGAAATCAGCTGA 59.932 39.130 20.79 20.79 0.00 4.26
4893 6308 4.150098 GCTTGCAAAAGAAATCAGCTGAAG 59.850 41.667 22.50 9.81 0.00 3.02
4894 6309 4.924305 TGCAAAAGAAATCAGCTGAAGT 57.076 36.364 22.50 11.62 0.00 3.01
4896 6311 6.579666 TGCAAAAGAAATCAGCTGAAGTAT 57.420 33.333 22.50 5.87 0.00 2.12
4897 6312 6.615088 TGCAAAAGAAATCAGCTGAAGTATC 58.385 36.000 22.50 15.62 0.00 2.24
4904 6324 8.940768 AGAAATCAGCTGAAGTATCTAAAGTC 57.059 34.615 22.50 3.90 0.00 3.01
4941 6361 4.202890 TGAGCCCAGTTATATCCCTCCATA 60.203 45.833 0.00 0.00 0.00 2.74
4959 6379 3.069586 CCATAACTAACTGATGAGCCCGA 59.930 47.826 0.00 0.00 0.00 5.14
4962 6382 0.461548 CTAACTGATGAGCCCGAGCA 59.538 55.000 0.00 0.00 43.56 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.751542 TTGGTTCACGTAATTCAAACAAAATAT 57.248 25.926 0.00 0.00 0.00 1.28
24 25 9.239002 CTTGGTTCACGTAATTCAAACAAAATA 57.761 29.630 0.00 0.00 0.00 1.40
25 26 7.976734 TCTTGGTTCACGTAATTCAAACAAAAT 59.023 29.630 0.00 0.00 0.00 1.82
26 27 7.273815 GTCTTGGTTCACGTAATTCAAACAAAA 59.726 33.333 0.00 0.00 0.00 2.44
27 28 6.748198 GTCTTGGTTCACGTAATTCAAACAAA 59.252 34.615 0.00 0.00 0.00 2.83
28 29 6.259638 GTCTTGGTTCACGTAATTCAAACAA 58.740 36.000 0.00 0.00 0.00 2.83
29 30 5.220892 GGTCTTGGTTCACGTAATTCAAACA 60.221 40.000 0.00 0.00 0.00 2.83
30 31 5.209977 GGTCTTGGTTCACGTAATTCAAAC 58.790 41.667 0.00 0.00 0.00 2.93
31 32 4.882427 TGGTCTTGGTTCACGTAATTCAAA 59.118 37.500 0.00 0.00 0.00 2.69
32 33 4.452825 TGGTCTTGGTTCACGTAATTCAA 58.547 39.130 0.00 0.00 0.00 2.69
33 34 4.074627 TGGTCTTGGTTCACGTAATTCA 57.925 40.909 0.00 0.00 0.00 2.57
34 35 5.427036 TTTGGTCTTGGTTCACGTAATTC 57.573 39.130 0.00 0.00 0.00 2.17
35 36 6.399639 AATTTGGTCTTGGTTCACGTAATT 57.600 33.333 0.00 0.00 0.00 1.40
36 37 6.399639 AAATTTGGTCTTGGTTCACGTAAT 57.600 33.333 0.00 0.00 0.00 1.89
37 38 5.838531 AAATTTGGTCTTGGTTCACGTAA 57.161 34.783 0.00 0.00 0.00 3.18
38 39 5.357314 TGAAAATTTGGTCTTGGTTCACGTA 59.643 36.000 0.00 0.00 0.00 3.57
39 40 4.158764 TGAAAATTTGGTCTTGGTTCACGT 59.841 37.500 0.00 0.00 0.00 4.49
40 41 4.677584 TGAAAATTTGGTCTTGGTTCACG 58.322 39.130 0.00 0.00 0.00 4.35
41 42 7.872483 ACATATGAAAATTTGGTCTTGGTTCAC 59.128 33.333 10.38 0.00 0.00 3.18
42 43 7.961351 ACATATGAAAATTTGGTCTTGGTTCA 58.039 30.769 10.38 0.00 0.00 3.18
43 44 8.831715 AACATATGAAAATTTGGTCTTGGTTC 57.168 30.769 10.38 0.00 0.00 3.62
44 45 9.054922 CAAACATATGAAAATTTGGTCTTGGTT 57.945 29.630 10.38 0.00 0.00 3.67
45 46 7.173047 GCAAACATATGAAAATTTGGTCTTGGT 59.827 33.333 10.38 0.00 33.55 3.67
46 47 7.172875 TGCAAACATATGAAAATTTGGTCTTGG 59.827 33.333 10.38 0.00 33.55 3.61
47 48 8.085720 TGCAAACATATGAAAATTTGGTCTTG 57.914 30.769 10.38 0.00 33.55 3.02
48 49 8.674263 TTGCAAACATATGAAAATTTGGTCTT 57.326 26.923 10.38 0.00 33.55 3.01
49 50 8.674263 TTTGCAAACATATGAAAATTTGGTCT 57.326 26.923 8.05 0.00 33.55 3.85
50 51 9.727627 TTTTTGCAAACATATGAAAATTTGGTC 57.272 25.926 12.39 0.00 33.55 4.02
51 52 9.733219 CTTTTTGCAAACATATGAAAATTTGGT 57.267 25.926 12.39 0.00 33.55 3.67
52 53 9.947669 TCTTTTTGCAAACATATGAAAATTTGG 57.052 25.926 12.39 0.00 33.55 3.28
54 55 9.667989 GCTCTTTTTGCAAACATATGAAAATTT 57.332 25.926 12.39 0.00 28.10 1.82
55 56 9.059260 AGCTCTTTTTGCAAACATATGAAAATT 57.941 25.926 12.39 0.00 28.10 1.82
56 57 8.611654 AGCTCTTTTTGCAAACATATGAAAAT 57.388 26.923 12.39 0.00 28.10 1.82
57 58 9.539825 TTAGCTCTTTTTGCAAACATATGAAAA 57.460 25.926 12.39 2.50 0.00 2.29
58 59 9.539825 TTTAGCTCTTTTTGCAAACATATGAAA 57.460 25.926 12.39 4.95 0.00 2.69
59 60 9.539825 TTTTAGCTCTTTTTGCAAACATATGAA 57.460 25.926 12.39 1.26 0.00 2.57
60 61 9.539825 TTTTTAGCTCTTTTTGCAAACATATGA 57.460 25.926 12.39 4.71 0.00 2.15
63 64 9.539825 TCATTTTTAGCTCTTTTTGCAAACATA 57.460 25.926 12.39 0.00 0.00 2.29
64 65 8.436046 TCATTTTTAGCTCTTTTTGCAAACAT 57.564 26.923 12.39 0.00 0.00 2.71
65 66 7.840342 TCATTTTTAGCTCTTTTTGCAAACA 57.160 28.000 12.39 4.32 0.00 2.83
66 67 7.737311 CGATCATTTTTAGCTCTTTTTGCAAAC 59.263 33.333 12.39 0.00 0.00 2.93
67 68 7.569226 GCGATCATTTTTAGCTCTTTTTGCAAA 60.569 33.333 8.05 8.05 0.00 3.68
68 69 6.128849 GCGATCATTTTTAGCTCTTTTTGCAA 60.129 34.615 0.00 0.00 0.00 4.08
69 70 5.345741 GCGATCATTTTTAGCTCTTTTTGCA 59.654 36.000 0.00 0.00 0.00 4.08
70 71 5.497597 CGCGATCATTTTTAGCTCTTTTTGC 60.498 40.000 0.00 0.00 0.00 3.68
71 72 5.003778 CCGCGATCATTTTTAGCTCTTTTTG 59.996 40.000 8.23 0.00 0.00 2.44
72 73 5.095490 CCGCGATCATTTTTAGCTCTTTTT 58.905 37.500 8.23 0.00 0.00 1.94
73 74 4.438744 CCCGCGATCATTTTTAGCTCTTTT 60.439 41.667 8.23 0.00 0.00 2.27
74 75 3.065371 CCCGCGATCATTTTTAGCTCTTT 59.935 43.478 8.23 0.00 0.00 2.52
75 76 2.614057 CCCGCGATCATTTTTAGCTCTT 59.386 45.455 8.23 0.00 0.00 2.85
76 77 2.213499 CCCGCGATCATTTTTAGCTCT 58.787 47.619 8.23 0.00 0.00 4.09
77 78 1.334149 GCCCGCGATCATTTTTAGCTC 60.334 52.381 8.23 0.00 0.00 4.09
78 79 0.663153 GCCCGCGATCATTTTTAGCT 59.337 50.000 8.23 0.00 0.00 3.32
79 80 0.317854 GGCCCGCGATCATTTTTAGC 60.318 55.000 8.23 0.00 0.00 3.09
80 81 0.041312 CGGCCCGCGATCATTTTTAG 60.041 55.000 8.23 0.00 0.00 1.85
81 82 1.440938 CCGGCCCGCGATCATTTTTA 61.441 55.000 8.23 0.00 0.00 1.52
82 83 2.770589 CCGGCCCGCGATCATTTTT 61.771 57.895 8.23 0.00 0.00 1.94
83 84 3.209097 CCGGCCCGCGATCATTTT 61.209 61.111 8.23 0.00 0.00 1.82
96 97 3.894547 TTTCGTCCTCAAGGCCGGC 62.895 63.158 21.18 21.18 37.15 6.13
97 98 0.676782 ATTTTCGTCCTCAAGGCCGG 60.677 55.000 0.00 0.00 37.15 6.13
98 99 0.447801 CATTTTCGTCCTCAAGGCCG 59.552 55.000 0.00 0.00 38.01 6.13
99 100 0.171231 GCATTTTCGTCCTCAAGGCC 59.829 55.000 0.00 0.00 34.44 5.19
100 101 0.179189 CGCATTTTCGTCCTCAAGGC 60.179 55.000 0.00 0.00 34.44 4.35
101 102 1.156736 ACGCATTTTCGTCCTCAAGG 58.843 50.000 0.00 0.00 38.44 3.61
133 134 4.160635 GTTTGGATCGGCCGTGCG 62.161 66.667 27.15 0.00 40.66 5.34
134 135 3.053291 TGTTTGGATCGGCCGTGC 61.053 61.111 27.15 17.97 40.66 5.34
135 136 2.686816 GGTGTTTGGATCGGCCGTG 61.687 63.158 27.15 0.00 40.66 4.94
136 137 2.359478 GGTGTTTGGATCGGCCGT 60.359 61.111 27.15 12.96 40.66 5.68
137 138 1.519751 TTTGGTGTTTGGATCGGCCG 61.520 55.000 22.12 22.12 40.66 6.13
138 139 0.676736 TTTTGGTGTTTGGATCGGCC 59.323 50.000 0.00 0.00 37.10 6.13
139 140 1.336795 CCTTTTGGTGTTTGGATCGGC 60.337 52.381 0.00 0.00 34.07 5.54
140 141 1.272212 CCCTTTTGGTGTTTGGATCGG 59.728 52.381 0.00 0.00 38.10 4.18
141 142 1.272212 CCCCTTTTGGTGTTTGGATCG 59.728 52.381 0.00 0.00 38.10 3.69
142 143 2.325484 ACCCCTTTTGGTGTTTGGATC 58.675 47.619 0.00 0.00 37.20 3.36
143 144 2.487746 ACCCCTTTTGGTGTTTGGAT 57.512 45.000 0.00 0.00 37.20 3.41
151 152 1.119684 GCTTGTTCACCCCTTTTGGT 58.880 50.000 0.00 0.00 39.96 3.67
152 153 0.392706 GGCTTGTTCACCCCTTTTGG 59.607 55.000 0.00 0.00 39.97 3.28
153 154 0.031994 CGGCTTGTTCACCCCTTTTG 59.968 55.000 0.00 0.00 0.00 2.44
154 155 0.106419 TCGGCTTGTTCACCCCTTTT 60.106 50.000 0.00 0.00 0.00 2.27
155 156 0.822121 GTCGGCTTGTTCACCCCTTT 60.822 55.000 0.00 0.00 0.00 3.11
156 157 1.228154 GTCGGCTTGTTCACCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
157 158 2.430367 GTCGGCTTGTTCACCCCT 59.570 61.111 0.00 0.00 0.00 4.79
158 159 2.671963 GGTCGGCTTGTTCACCCC 60.672 66.667 0.00 0.00 0.00 4.95
159 160 1.104577 TTTGGTCGGCTTGTTCACCC 61.105 55.000 0.00 0.00 0.00 4.61
160 161 0.030235 GTTTGGTCGGCTTGTTCACC 59.970 55.000 0.00 0.00 0.00 4.02
161 162 0.316689 CGTTTGGTCGGCTTGTTCAC 60.317 55.000 0.00 0.00 0.00 3.18
162 163 1.440938 CCGTTTGGTCGGCTTGTTCA 61.441 55.000 0.00 0.00 43.96 3.18
163 164 1.281656 CCGTTTGGTCGGCTTGTTC 59.718 57.895 0.00 0.00 43.96 3.18
164 165 3.427670 CCGTTTGGTCGGCTTGTT 58.572 55.556 0.00 0.00 43.96 2.83
171 172 2.501881 CGCTTTTTATCCGTTTGGTCG 58.498 47.619 0.00 0.00 36.30 4.79
172 173 2.485038 TCCGCTTTTTATCCGTTTGGTC 59.515 45.455 0.00 0.00 36.30 4.02
173 174 2.227149 GTCCGCTTTTTATCCGTTTGGT 59.773 45.455 0.00 0.00 36.30 3.67
174 175 2.226912 TGTCCGCTTTTTATCCGTTTGG 59.773 45.455 0.00 0.00 0.00 3.28
175 176 3.546002 TGTCCGCTTTTTATCCGTTTG 57.454 42.857 0.00 0.00 0.00 2.93
176 177 4.571372 TTTGTCCGCTTTTTATCCGTTT 57.429 36.364 0.00 0.00 0.00 3.60
177 178 4.292599 GTTTTGTCCGCTTTTTATCCGTT 58.707 39.130 0.00 0.00 0.00 4.44
178 179 3.607542 CGTTTTGTCCGCTTTTTATCCGT 60.608 43.478 0.00 0.00 0.00 4.69
179 180 2.906161 CGTTTTGTCCGCTTTTTATCCG 59.094 45.455 0.00 0.00 0.00 4.18
190 191 2.247267 GGACGTGCGTTTTGTCCG 59.753 61.111 0.00 0.00 42.42 4.79
191 192 2.039062 AACGGACGTGCGTTTTGTCC 62.039 55.000 36.96 8.05 46.91 4.02
192 193 0.247775 AAACGGACGTGCGTTTTGTC 60.248 50.000 42.00 5.66 35.15 3.18
193 194 0.521659 CAAACGGACGTGCGTTTTGT 60.522 50.000 43.99 29.24 36.36 2.83
194 195 0.521659 ACAAACGGACGTGCGTTTTG 60.522 50.000 43.99 37.64 36.36 2.44
195 196 0.521659 CACAAACGGACGTGCGTTTT 60.522 50.000 43.99 33.49 36.36 2.43
196 197 1.061253 CACAAACGGACGTGCGTTT 59.939 52.632 42.00 42.00 38.63 3.60
197 198 2.027628 GACACAAACGGACGTGCGTT 62.028 55.000 36.96 36.96 36.57 4.84
198 199 2.509786 ACACAAACGGACGTGCGT 60.510 55.556 29.92 29.92 36.57 5.24
199 200 2.244382 GACACAAACGGACGTGCG 59.756 61.111 28.33 28.33 36.57 5.34
200 201 2.244382 CGACACAAACGGACGTGC 59.756 61.111 0.00 0.00 36.57 5.34
207 208 3.773630 ATCGCGCCGACACAAACG 61.774 61.111 0.00 0.00 39.18 3.60
208 209 2.202171 CATCGCGCCGACACAAAC 60.202 61.111 0.00 0.00 39.18 2.93
209 210 3.418913 CCATCGCGCCGACACAAA 61.419 61.111 0.00 0.00 39.18 2.83
210 211 4.365505 TCCATCGCGCCGACACAA 62.366 61.111 0.00 0.00 39.18 3.33
211 212 4.794439 CTCCATCGCGCCGACACA 62.794 66.667 0.00 0.00 39.18 3.72
212 213 4.796231 ACTCCATCGCGCCGACAC 62.796 66.667 0.00 0.00 39.18 3.67
213 214 4.063967 AACTCCATCGCGCCGACA 62.064 61.111 0.00 0.00 39.18 4.35
214 215 3.554692 CAACTCCATCGCGCCGAC 61.555 66.667 0.00 0.00 39.18 4.79
217 218 2.629050 TAGAGCAACTCCATCGCGCC 62.629 60.000 0.00 0.00 0.00 6.53
218 219 0.806102 TTAGAGCAACTCCATCGCGC 60.806 55.000 0.00 0.00 0.00 6.86
219 220 0.924090 GTTAGAGCAACTCCATCGCG 59.076 55.000 0.00 0.00 34.06 5.87
220 221 1.929836 CAGTTAGAGCAACTCCATCGC 59.070 52.381 0.00 0.00 44.48 4.58
221 222 1.929836 GCAGTTAGAGCAACTCCATCG 59.070 52.381 0.00 0.00 44.48 3.84
222 223 2.935201 CAGCAGTTAGAGCAACTCCATC 59.065 50.000 0.00 0.00 44.48 3.51
223 224 2.938756 GCAGCAGTTAGAGCAACTCCAT 60.939 50.000 0.00 0.00 44.48 3.41
224 225 1.609061 GCAGCAGTTAGAGCAACTCCA 60.609 52.381 0.00 0.00 44.48 3.86
225 226 1.082690 GCAGCAGTTAGAGCAACTCC 58.917 55.000 0.00 0.00 44.48 3.85
226 227 1.800805 TGCAGCAGTTAGAGCAACTC 58.199 50.000 0.00 0.00 44.48 3.01
227 228 7.161699 GCATAATGCAGCAGTTAGAGCAACT 62.162 44.000 0.00 0.00 45.18 3.16
228 229 4.595116 CATAATGCAGCAGTTAGAGCAAC 58.405 43.478 0.00 0.00 40.76 4.17
229 230 3.065786 GCATAATGCAGCAGTTAGAGCAA 59.934 43.478 0.00 0.00 44.26 3.91
230 231 2.615447 GCATAATGCAGCAGTTAGAGCA 59.385 45.455 0.00 0.00 44.26 4.26
231 232 3.265070 GCATAATGCAGCAGTTAGAGC 57.735 47.619 0.00 5.18 44.26 4.09
271 272 7.539034 AACTAAACATGCCTTTAGGTCAAAT 57.461 32.000 16.13 0.00 37.84 2.32
283 324 8.894768 AATCTATCAGACTAACTAAACATGCC 57.105 34.615 0.00 0.00 0.00 4.40
293 334 9.522804 AAGAATCGTCAAATCTATCAGACTAAC 57.477 33.333 0.00 0.00 0.00 2.34
305 346 9.943465 GAAATGCTTTTTAAGAATCGTCAAATC 57.057 29.630 0.00 0.00 0.00 2.17
313 354 7.606349 AGACCAGGAAATGCTTTTTAAGAATC 58.394 34.615 0.00 0.00 0.00 2.52
324 365 3.950395 GCTAATGAAGACCAGGAAATGCT 59.050 43.478 0.00 0.00 0.00 3.79
332 373 3.356529 ACCCAAGCTAATGAAGACCAG 57.643 47.619 0.00 0.00 0.00 4.00
357 398 8.818860 GGTAAAACTTATAAGGGAAAATGGGTT 58.181 33.333 16.73 0.00 0.00 4.11
358 399 7.400915 GGGTAAAACTTATAAGGGAAAATGGGT 59.599 37.037 16.73 0.00 0.00 4.51
458 1389 5.132502 CCTAATCAAGGTACATGCCAATGA 58.867 41.667 0.00 0.00 40.94 2.57
472 1403 1.417890 ACCTCATCCGGCCTAATCAAG 59.582 52.381 0.00 0.00 0.00 3.02
478 1409 0.758734 CATCAACCTCATCCGGCCTA 59.241 55.000 0.00 0.00 0.00 3.93
487 1418 5.183713 AGAAAATGAAATCGCATCAACCTCA 59.816 36.000 0.00 0.00 0.00 3.86
496 1432 6.349280 CCACTTAAGGAGAAAATGAAATCGCA 60.349 38.462 7.53 0.00 0.00 5.10
499 1435 6.333416 GGCCACTTAAGGAGAAAATGAAATC 58.667 40.000 7.53 0.00 0.00 2.17
542 1479 3.119209 GCCCGAACTAGTACTGTAGCTTT 60.119 47.826 5.39 0.00 0.00 3.51
544 1481 2.022934 GCCCGAACTAGTACTGTAGCT 58.977 52.381 5.39 0.00 0.00 3.32
554 1491 2.604046 ATAAGTGCAGCCCGAACTAG 57.396 50.000 0.00 0.00 0.00 2.57
555 1492 3.006940 CAAATAAGTGCAGCCCGAACTA 58.993 45.455 0.00 0.00 0.00 2.24
556 1493 1.812571 CAAATAAGTGCAGCCCGAACT 59.187 47.619 0.00 0.00 0.00 3.01
557 1494 1.732405 GCAAATAAGTGCAGCCCGAAC 60.732 52.381 0.00 0.00 44.29 3.95
558 1495 0.525761 GCAAATAAGTGCAGCCCGAA 59.474 50.000 0.00 0.00 44.29 4.30
583 1520 3.275400 CAGTCCTACTGTAGCATAGCG 57.725 52.381 9.35 0.00 41.19 4.26
659 1601 3.179265 CTAACTCGTGCGTGGCCG 61.179 66.667 0.00 0.00 37.07 6.13
660 1602 2.813908 CCTAACTCGTGCGTGGCC 60.814 66.667 0.00 0.00 0.00 5.36
664 1606 0.865769 CTTTTGCCTAACTCGTGCGT 59.134 50.000 0.00 0.00 0.00 5.24
798 1748 0.947960 CTAGCTCGCTCGATCAGGAA 59.052 55.000 0.00 0.00 0.00 3.36
799 1749 1.511318 GCTAGCTCGCTCGATCAGGA 61.511 60.000 7.70 0.00 0.00 3.86
998 1964 2.093658 AGGGTAAACGATCGATGTTGCT 60.094 45.455 24.34 0.00 0.00 3.91
1005 1971 2.352651 CGTACAGAGGGTAAACGATCGA 59.647 50.000 24.34 0.00 34.21 3.59
1023 1993 0.837272 AGGTACGGGCTAGGTACGTA 59.163 55.000 0.00 0.00 40.85 3.57
1045 2015 3.450115 GGAGGGAGGTCACCGTCG 61.450 72.222 0.00 0.00 43.23 5.12
1046 2016 1.609794 AAGGAGGGAGGTCACCGTC 60.610 63.158 0.00 0.00 42.08 4.79
1047 2017 1.913762 CAAGGAGGGAGGTCACCGT 60.914 63.158 0.00 0.00 0.00 4.83
1048 2018 2.660064 CCAAGGAGGGAGGTCACCG 61.660 68.421 0.00 0.00 0.00 4.94
1049 2019 2.972819 GCCAAGGAGGGAGGTCACC 61.973 68.421 0.00 0.00 38.09 4.02
1050 2020 2.671682 GCCAAGGAGGGAGGTCAC 59.328 66.667 0.00 0.00 38.09 3.67
1051 2021 3.003173 CGCCAAGGAGGGAGGTCA 61.003 66.667 0.00 0.00 38.09 4.02
1052 2022 4.475135 GCGCCAAGGAGGGAGGTC 62.475 72.222 0.00 0.00 38.09 3.85
1055 2025 3.801997 ATGGCGCCAAGGAGGGAG 61.802 66.667 36.33 0.00 38.09 4.30
1056 2026 4.113815 CATGGCGCCAAGGAGGGA 62.114 66.667 36.33 7.40 38.09 4.20
1451 2444 4.630111 GATAATCAAGTGGAGGCAGAGAG 58.370 47.826 0.00 0.00 0.00 3.20
1475 2468 2.161831 TCGAGCACGAAAATGGCAG 58.838 52.632 3.01 0.00 45.74 4.85
1480 2473 7.292851 TCGAAACGAAATCGAGCACGAAAAT 62.293 40.000 10.97 0.00 43.76 1.82
1517 2510 1.200252 CTCGATCAGAACTGACACGGT 59.800 52.381 21.98 4.65 43.11 4.83
1634 2627 7.561356 GGTTAGGGTATGGTTAGTTAGTAGTCA 59.439 40.741 0.00 0.00 0.00 3.41
1637 2630 7.071917 AGGGTTAGGGTATGGTTAGTTAGTAG 58.928 42.308 0.00 0.00 0.00 2.57
1645 2638 4.015352 ACTGGTAGGGTTAGGGTATGGTTA 60.015 45.833 0.00 0.00 0.00 2.85
1829 2829 1.274703 ATGCCGATGTTGGTCTCCCT 61.275 55.000 0.00 0.00 0.00 4.20
1835 2835 3.287445 GGCAATGCCGATGTTGGT 58.713 55.556 9.14 0.00 39.62 3.67
1912 2912 0.037303 ACCTCTCGTCGAAGGTGGTA 59.963 55.000 20.99 0.00 32.77 3.25
1948 2948 4.398358 AGCTAGAAGACAAGTGCACGTATA 59.602 41.667 12.01 0.00 0.00 1.47
1949 2949 3.193691 AGCTAGAAGACAAGTGCACGTAT 59.806 43.478 12.01 0.00 0.00 3.06
2001 3001 2.754472 TCTGTTTCACACGATGGAGTG 58.246 47.619 0.00 0.00 46.83 3.51
2056 3056 1.802636 GGTGTTGATGTCCATGGCG 59.197 57.895 6.96 0.00 0.00 5.69
2143 3143 3.900855 GCATGAGCCTGACCTGTG 58.099 61.111 0.00 0.00 33.58 3.66
2250 3251 6.964934 CGATCATGCATGGTTATTATGTCATG 59.035 38.462 25.97 0.00 39.12 3.07
2251 3252 6.403964 GCGATCATGCATGGTTATTATGTCAT 60.404 38.462 25.97 7.77 34.15 3.06
2252 3253 5.106594 GCGATCATGCATGGTTATTATGTCA 60.107 40.000 25.97 2.76 34.15 3.58
2253 3254 5.106594 TGCGATCATGCATGGTTATTATGTC 60.107 40.000 25.97 3.96 40.62 3.06
2254 3255 4.761227 TGCGATCATGCATGGTTATTATGT 59.239 37.500 25.97 2.13 40.62 2.29
2255 3256 5.299582 TGCGATCATGCATGGTTATTATG 57.700 39.130 25.97 7.68 40.62 1.90
2256 3257 4.142534 GCTGCGATCATGCATGGTTATTAT 60.143 41.667 25.97 11.25 45.26 1.28
2257 3258 3.189080 GCTGCGATCATGCATGGTTATTA 59.811 43.478 25.97 6.40 45.26 0.98
2258 3259 2.030540 GCTGCGATCATGCATGGTTATT 60.031 45.455 25.97 6.76 45.26 1.40
2334 3335 2.197465 GACCCTTTCCCTATGGTGTCT 58.803 52.381 0.00 0.00 0.00 3.41
2490 3491 1.497161 TTGCTTACCTCTCTAGCCCC 58.503 55.000 0.00 0.00 34.03 5.80
2557 3563 6.086765 CACGTTCAGCAAATCAAACTAATGTC 59.913 38.462 0.00 0.00 0.00 3.06
2704 3710 1.587613 GGTGCTCTCGATCACGCTC 60.588 63.158 0.00 0.00 39.58 5.03
2710 3716 0.667993 CTCTCCAGGTGCTCTCGATC 59.332 60.000 0.00 0.00 0.00 3.69
2789 3795 5.814764 ATGTTGATGAACTCTGCAAGATC 57.185 39.130 0.00 2.17 45.62 2.75
2818 3824 4.095211 TCAATTGGCCAATGGAAATCAGA 58.905 39.130 29.93 15.30 28.25 3.27
2834 3840 4.424061 TCCTGTTCGAGCAAATCAATTG 57.576 40.909 2.85 0.00 42.21 2.32
2929 3935 2.554806 CGTAGCTGATTACCACGTCA 57.445 50.000 0.00 0.00 0.00 4.35
2944 3950 6.371809 TTTGCTTAATTAGGGAATGCGTAG 57.628 37.500 2.41 0.00 0.00 3.51
2948 3954 6.636850 CGTACATTTGCTTAATTAGGGAATGC 59.363 38.462 2.41 0.00 0.00 3.56
2954 3960 5.965334 CACTGCGTACATTTGCTTAATTAGG 59.035 40.000 0.00 0.00 0.00 2.69
2957 3963 5.391950 CCTCACTGCGTACATTTGCTTAATT 60.392 40.000 0.00 0.00 0.00 1.40
2959 3965 3.435327 CCTCACTGCGTACATTTGCTTAA 59.565 43.478 0.00 0.00 0.00 1.85
2960 3966 3.000041 CCTCACTGCGTACATTTGCTTA 59.000 45.455 0.00 0.00 0.00 3.09
2963 3969 0.179189 GCCTCACTGCGTACATTTGC 60.179 55.000 0.00 0.00 0.00 3.68
2965 3971 0.036164 TGGCCTCACTGCGTACATTT 59.964 50.000 3.32 0.00 0.00 2.32
2966 3972 0.253044 ATGGCCTCACTGCGTACATT 59.747 50.000 3.32 0.00 0.00 2.71
2968 3974 1.079197 CATGGCCTCACTGCGTACA 60.079 57.895 3.32 0.00 0.00 2.90
2969 3975 1.815421 CCATGGCCTCACTGCGTAC 60.815 63.158 3.32 0.00 0.00 3.67
2970 3976 1.960040 CTCCATGGCCTCACTGCGTA 61.960 60.000 6.96 0.00 0.00 4.42
2971 3977 3.320879 CTCCATGGCCTCACTGCGT 62.321 63.158 6.96 0.00 0.00 5.24
2972 3978 2.513204 CTCCATGGCCTCACTGCG 60.513 66.667 6.96 0.00 0.00 5.18
2973 3979 2.827642 GCTCCATGGCCTCACTGC 60.828 66.667 6.96 0.00 0.00 4.40
2974 3980 1.451567 CAGCTCCATGGCCTCACTG 60.452 63.158 6.96 5.93 0.00 3.66
3027 4033 2.650778 GCCGGAACCTTGCCAAAG 59.349 61.111 5.05 0.00 0.00 2.77
3417 4423 0.981183 ATGACCTGCCGGTGTAGAAA 59.019 50.000 3.79 0.00 45.73 2.52
3439 4445 1.274703 GCCATGGGTGGGAGAGAGAA 61.275 60.000 15.13 0.00 46.14 2.87
3459 4469 9.926158 TGAGCAAACAAAACATATAAATGACAT 57.074 25.926 0.00 0.00 36.54 3.06
3460 4470 9.755804 TTGAGCAAACAAAACATATAAATGACA 57.244 25.926 0.00 0.00 36.54 3.58
3473 4499 3.249986 AGCAGCTTTGAGCAAACAAAA 57.750 38.095 2.47 0.00 45.56 2.44
3487 4513 2.202797 CGACGCATGGTAGCAGCT 60.203 61.111 0.00 0.00 0.00 4.24
3514 4540 2.514013 CGAACCTGCATACGCCGTC 61.514 63.158 0.00 0.00 37.32 4.79
3518 4544 1.006832 ATTGTCGAACCTGCATACGC 58.993 50.000 0.00 0.00 39.24 4.42
3598 4624 0.109086 CAGTCGATGCTCCTCACGTT 60.109 55.000 0.00 0.00 0.00 3.99
3732 4764 4.619227 CGGCGGTGGGTTCACACT 62.619 66.667 0.00 0.00 45.32 3.55
3749 4781 2.663606 GCATTTCGGTGTTCGGTGTTAC 60.664 50.000 0.00 0.00 39.77 2.50
3814 4847 4.084013 GGTGTTTCTTAAGTGGATCACGTG 60.084 45.833 9.94 9.94 39.64 4.49
3827 4860 4.095185 CACAGAACCAAACGGTGTTTCTTA 59.905 41.667 0.00 0.00 36.67 2.10
3837 4870 2.602217 GCTGCTAACACAGAACCAAACG 60.602 50.000 0.00 0.00 40.25 3.60
3838 4871 2.357637 TGCTGCTAACACAGAACCAAAC 59.642 45.455 0.00 0.00 40.25 2.93
3841 4874 1.946768 GTTGCTGCTAACACAGAACCA 59.053 47.619 0.00 0.00 40.25 3.67
3843 4876 3.971032 AAGTTGCTGCTAACACAGAAC 57.029 42.857 14.29 3.26 40.25 3.01
3845 4878 4.703897 AGTTAAGTTGCTGCTAACACAGA 58.296 39.130 14.29 0.03 40.25 3.41
3846 4879 6.347725 CCTTAGTTAAGTTGCTGCTAACACAG 60.348 42.308 14.29 8.40 40.80 3.66
3895 4928 5.294552 GGACAAACAGGTCTATAATGCAGAC 59.705 44.000 0.00 0.00 41.43 3.51
3964 5005 4.509970 GCTTTGTTTTCCCACAAATACACC 59.490 41.667 0.00 0.00 43.93 4.16
4032 5077 9.143155 TCACTAGGCTTGTAATCTGTATTATCA 57.857 33.333 0.24 0.00 30.42 2.15
4217 5264 1.891150 CAATCCCAAAAGACTGCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
4231 5278 4.705482 CCCCCATTGGTCAATCCC 57.295 61.111 1.20 0.00 34.77 3.85
4249 5296 3.066380 CAAAGCCCTGTGTAAAATTGGC 58.934 45.455 0.00 0.00 39.17 4.52
4250 5297 3.070878 ACCAAAGCCCTGTGTAAAATTGG 59.929 43.478 0.00 0.00 41.35 3.16
4268 5315 4.805744 ACAATAACAAAGGGGTGTACCAA 58.194 39.130 3.11 0.00 42.91 3.67
4418 5465 1.307986 TCGGAGAGGTGAGCCAGAT 59.692 57.895 0.00 0.00 37.19 2.90
4499 5772 2.619849 CCTCATGTTGTGCCCTCTGATT 60.620 50.000 0.00 0.00 0.00 2.57
4514 5787 9.784531 ACAATATACAGAAATAGGTTCCTCATG 57.215 33.333 0.00 0.00 36.86 3.07
4585 5858 8.564574 CCATTTTACTGTAAAGCTACTGAAACA 58.435 33.333 12.30 0.00 32.73 2.83
4605 5878 9.182214 GATCAGTCATATATATGCACCCATTTT 57.818 33.333 16.59 0.00 33.76 1.82
4606 5879 8.554870 AGATCAGTCATATATATGCACCCATTT 58.445 33.333 16.59 5.24 33.76 2.32
4607 5880 7.991460 CAGATCAGTCATATATATGCACCCATT 59.009 37.037 16.59 0.33 33.76 3.16
4608 5881 7.506971 CAGATCAGTCATATATATGCACCCAT 58.493 38.462 16.59 10.33 33.76 4.00
4609 5882 6.631088 GCAGATCAGTCATATATATGCACCCA 60.631 42.308 16.59 6.92 37.68 4.51
4610 5883 5.757320 GCAGATCAGTCATATATATGCACCC 59.243 44.000 16.59 5.84 37.68 4.61
4611 5884 6.343703 TGCAGATCAGTCATATATATGCACC 58.656 40.000 16.59 7.96 41.45 5.01
4612 5885 8.434733 AATGCAGATCAGTCATATATATGCAC 57.565 34.615 16.59 14.63 46.81 4.57
4614 5887 8.274248 CGAAATGCAGATCAGTCATATATATGC 58.726 37.037 16.59 11.98 38.12 3.14
4615 5888 9.310716 ACGAAATGCAGATCAGTCATATATATG 57.689 33.333 15.47 15.47 35.04 1.78
4616 5889 9.310716 CACGAAATGCAGATCAGTCATATATAT 57.689 33.333 0.00 0.00 0.00 0.86
4617 5890 8.693542 CACGAAATGCAGATCAGTCATATATA 57.306 34.615 0.00 0.00 0.00 0.86
4647 5920 3.117372 GCTGTGGCATCATCCAGC 58.883 61.111 10.70 10.70 42.94 4.85
4658 5931 2.142356 TATTTGGTCCATGGCTGTGG 57.858 50.000 6.96 3.48 40.76 4.17
4732 6147 2.226330 TGCAACGCTCACACCTTTATT 58.774 42.857 0.00 0.00 0.00 1.40
4747 6162 3.988379 TTGGAAGTTGATGACTGCAAC 57.012 42.857 0.00 0.00 44.46 4.17
4846 6261 8.786898 AGCAATATGTTATGATTATTCGCTGTT 58.213 29.630 0.00 0.00 0.00 3.16
4861 6276 9.142515 CTGATTTCTTTTGCAAGCAATATGTTA 57.857 29.630 8.46 0.00 35.70 2.41
4870 6285 3.645884 TCAGCTGATTTCTTTTGCAAGC 58.354 40.909 13.74 0.00 0.00 4.01
4880 6295 7.766278 TGGACTTTAGATACTTCAGCTGATTTC 59.234 37.037 19.04 11.79 0.00 2.17
4882 6297 7.187824 TGGACTTTAGATACTTCAGCTGATT 57.812 36.000 19.04 10.42 0.00 2.57
4883 6298 6.798427 TGGACTTTAGATACTTCAGCTGAT 57.202 37.500 19.04 6.10 0.00 2.90
4884 6299 6.398918 GTTGGACTTTAGATACTTCAGCTGA 58.601 40.000 13.74 13.74 0.00 4.26
4885 6300 5.582665 GGTTGGACTTTAGATACTTCAGCTG 59.417 44.000 7.63 7.63 0.00 4.24
4886 6301 5.248477 TGGTTGGACTTTAGATACTTCAGCT 59.752 40.000 0.00 0.00 0.00 4.24
4887 6302 5.488341 TGGTTGGACTTTAGATACTTCAGC 58.512 41.667 0.00 0.00 0.00 4.26
4888 6303 5.582665 GCTGGTTGGACTTTAGATACTTCAG 59.417 44.000 0.00 0.00 0.00 3.02
4889 6304 5.248477 AGCTGGTTGGACTTTAGATACTTCA 59.752 40.000 0.00 0.00 0.00 3.02
4890 6305 5.735766 AGCTGGTTGGACTTTAGATACTTC 58.264 41.667 0.00 0.00 0.00 3.01
4891 6306 5.763876 AGCTGGTTGGACTTTAGATACTT 57.236 39.130 0.00 0.00 0.00 2.24
4893 6308 6.403878 TGTAAGCTGGTTGGACTTTAGATAC 58.596 40.000 1.72 0.00 0.00 2.24
4894 6309 6.614694 TGTAAGCTGGTTGGACTTTAGATA 57.385 37.500 1.72 0.00 0.00 1.98
4896 6311 4.967084 TGTAAGCTGGTTGGACTTTAGA 57.033 40.909 1.72 0.00 0.00 2.10
4897 6312 5.245531 TCATGTAAGCTGGTTGGACTTTAG 58.754 41.667 1.72 0.00 0.00 1.85
4904 6324 1.098050 GGCTCATGTAAGCTGGTTGG 58.902 55.000 6.38 0.00 42.13 3.77
4941 6361 1.134670 GCTCGGGCTCATCAGTTAGTT 60.135 52.381 0.00 0.00 35.22 2.24
4962 6382 5.184864 TCACACCAACAATCTCAAACTTGTT 59.815 36.000 0.00 0.00 44.23 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.