Multiple sequence alignment - TraesCS4B01G283100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G283100 chr4B 100.000 2549 0 0 1 2549 566432095 566429547 0.000000e+00 4708
1 TraesCS4B01G283100 chr4B 90.118 425 19 7 2126 2549 17790320 17789918 4.830000e-147 531
2 TraesCS4B01G283100 chr4D 93.202 1986 101 15 571 2547 43272764 43270804 0.000000e+00 2889
3 TraesCS4B01G283100 chr4D 94.746 571 28 1 1 571 479763679 479763111 0.000000e+00 887
4 TraesCS4B01G283100 chr3B 92.890 1983 108 14 575 2547 548772277 548774236 0.000000e+00 2850
5 TraesCS4B01G283100 chr3B 92.424 1980 118 17 575 2547 548242939 548244893 0.000000e+00 2796
6 TraesCS4B01G283100 chr3B 91.331 1984 116 25 572 2547 599079411 599077476 0.000000e+00 2660
7 TraesCS4B01G283100 chr3B 93.448 641 17 11 1909 2549 454517361 454517976 0.000000e+00 928
8 TraesCS4B01G283100 chr5B 92.567 1991 116 12 565 2547 680230625 680228659 0.000000e+00 2828
9 TraesCS4B01G283100 chr5B 92.203 1988 118 17 569 2547 508124527 508122568 0.000000e+00 2778
10 TraesCS4B01G283100 chr7B 92.544 1985 112 15 572 2549 523399854 523397899 0.000000e+00 2813
11 TraesCS4B01G283100 chr7B 92.494 1985 114 15 572 2549 523525076 523523120 0.000000e+00 2808
12 TraesCS4B01G283100 chr7B 94.746 571 28 1 1 571 512375550 512376118 0.000000e+00 887
13 TraesCS4B01G283100 chr2D 92.550 1906 111 12 571 2471 632386603 632388482 0.000000e+00 2704
14 TraesCS4B01G283100 chr2D 91.863 1229 46 18 1327 2547 299992708 299993890 0.000000e+00 1666
15 TraesCS4B01G283100 chr2D 90.314 733 29 10 1816 2547 435213825 435214516 0.000000e+00 922
16 TraesCS4B01G283100 chr7D 91.537 1985 112 21 571 2547 574727119 574725183 0.000000e+00 2684
17 TraesCS4B01G283100 chr2B 91.824 1908 123 16 572 2471 1180725 1182607 0.000000e+00 2628
18 TraesCS4B01G283100 chr5D 92.423 1663 78 13 893 2547 482331845 482330223 0.000000e+00 2329
19 TraesCS4B01G283100 chr5D 91.475 1654 91 15 902 2547 324809622 324811233 0.000000e+00 2228
20 TraesCS4B01G283100 chr5D 94.746 571 27 2 1 571 356265631 356266198 0.000000e+00 885
21 TraesCS4B01G283100 chr6D 91.877 1108 38 20 1449 2547 277566533 277565469 0.000000e+00 1500
22 TraesCS4B01G283100 chr6B 94.746 571 28 1 1 571 394853932 394853364 0.000000e+00 887
23 TraesCS4B01G283100 chr6B 94.746 571 27 2 1 571 220027786 220027219 0.000000e+00 885
24 TraesCS4B01G283100 chr5A 94.746 571 28 1 1 571 646334103 646333535 0.000000e+00 887
25 TraesCS4B01G283100 chr1D 94.571 571 29 1 1 571 62490291 62490859 0.000000e+00 881
26 TraesCS4B01G283100 chr1D 94.580 572 28 2 1 571 364419238 364419807 0.000000e+00 881
27 TraesCS4B01G283100 chr1D 94.571 571 29 1 1 571 455405981 455406549 0.000000e+00 881


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G283100 chr4B 566429547 566432095 2548 True 4708 4708 100.000 1 2549 1 chr4B.!!$R2 2548
1 TraesCS4B01G283100 chr4D 43270804 43272764 1960 True 2889 2889 93.202 571 2547 1 chr4D.!!$R1 1976
2 TraesCS4B01G283100 chr4D 479763111 479763679 568 True 887 887 94.746 1 571 1 chr4D.!!$R2 570
3 TraesCS4B01G283100 chr3B 548772277 548774236 1959 False 2850 2850 92.890 575 2547 1 chr3B.!!$F3 1972
4 TraesCS4B01G283100 chr3B 548242939 548244893 1954 False 2796 2796 92.424 575 2547 1 chr3B.!!$F2 1972
5 TraesCS4B01G283100 chr3B 599077476 599079411 1935 True 2660 2660 91.331 572 2547 1 chr3B.!!$R1 1975
6 TraesCS4B01G283100 chr3B 454517361 454517976 615 False 928 928 93.448 1909 2549 1 chr3B.!!$F1 640
7 TraesCS4B01G283100 chr5B 680228659 680230625 1966 True 2828 2828 92.567 565 2547 1 chr5B.!!$R2 1982
8 TraesCS4B01G283100 chr5B 508122568 508124527 1959 True 2778 2778 92.203 569 2547 1 chr5B.!!$R1 1978
9 TraesCS4B01G283100 chr7B 523397899 523399854 1955 True 2813 2813 92.544 572 2549 1 chr7B.!!$R1 1977
10 TraesCS4B01G283100 chr7B 523523120 523525076 1956 True 2808 2808 92.494 572 2549 1 chr7B.!!$R2 1977
11 TraesCS4B01G283100 chr7B 512375550 512376118 568 False 887 887 94.746 1 571 1 chr7B.!!$F1 570
12 TraesCS4B01G283100 chr2D 632386603 632388482 1879 False 2704 2704 92.550 571 2471 1 chr2D.!!$F3 1900
13 TraesCS4B01G283100 chr2D 299992708 299993890 1182 False 1666 1666 91.863 1327 2547 1 chr2D.!!$F1 1220
14 TraesCS4B01G283100 chr2D 435213825 435214516 691 False 922 922 90.314 1816 2547 1 chr2D.!!$F2 731
15 TraesCS4B01G283100 chr7D 574725183 574727119 1936 True 2684 2684 91.537 571 2547 1 chr7D.!!$R1 1976
16 TraesCS4B01G283100 chr2B 1180725 1182607 1882 False 2628 2628 91.824 572 2471 1 chr2B.!!$F1 1899
17 TraesCS4B01G283100 chr5D 482330223 482331845 1622 True 2329 2329 92.423 893 2547 1 chr5D.!!$R1 1654
18 TraesCS4B01G283100 chr5D 324809622 324811233 1611 False 2228 2228 91.475 902 2547 1 chr5D.!!$F1 1645
19 TraesCS4B01G283100 chr5D 356265631 356266198 567 False 885 885 94.746 1 571 1 chr5D.!!$F2 570
20 TraesCS4B01G283100 chr6D 277565469 277566533 1064 True 1500 1500 91.877 1449 2547 1 chr6D.!!$R1 1098
21 TraesCS4B01G283100 chr6B 394853364 394853932 568 True 887 887 94.746 1 571 1 chr6B.!!$R2 570
22 TraesCS4B01G283100 chr6B 220027219 220027786 567 True 885 885 94.746 1 571 1 chr6B.!!$R1 570
23 TraesCS4B01G283100 chr5A 646333535 646334103 568 True 887 887 94.746 1 571 1 chr5A.!!$R1 570
24 TraesCS4B01G283100 chr1D 62490291 62490859 568 False 881 881 94.571 1 571 1 chr1D.!!$F1 570
25 TraesCS4B01G283100 chr1D 364419238 364419807 569 False 881 881 94.580 1 571 1 chr1D.!!$F2 570
26 TraesCS4B01G283100 chr1D 455405981 455406549 568 False 881 881 94.571 1 571 1 chr1D.!!$F3 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 472 0.101399 CCGCACTGCTCGTAGATCTT 59.899 55.0 0.0 0.0 33.89 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2341 2409 1.111667 CGTGTGCAAACATTCACGTG 58.888 50.0 9.94 9.94 45.26 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.639162 AAGGCATAGAAACGTAGAATAATCG 57.361 36.000 0.00 0.00 0.00 3.34
92 93 4.910458 ATACCCACTAGGCATTATGGTC 57.090 45.455 0.00 0.00 40.58 4.02
178 179 1.451927 ATCATGGACGCGCACCAAT 60.452 52.632 24.96 14.63 40.93 3.16
179 180 1.717791 ATCATGGACGCGCACCAATG 61.718 55.000 24.96 21.38 40.93 2.82
191 192 3.613910 GCGCACCAATGTAACTCCATTTT 60.614 43.478 0.30 0.00 32.81 1.82
271 272 4.156556 TCTGCAAAATCTCCAATTCCTTCG 59.843 41.667 0.00 0.00 0.00 3.79
290 291 2.295349 TCGTGGTTACCTCAGTGTCTTC 59.705 50.000 2.07 0.00 0.00 2.87
349 350 4.576053 TGTCCAGTCTCAACTTGTTGATTG 59.424 41.667 15.35 13.35 31.71 2.67
445 446 6.596621 TCCAATCCATAATCATTCGGTAACA 58.403 36.000 0.00 0.00 0.00 2.41
446 447 7.057264 TCCAATCCATAATCATTCGGTAACAA 58.943 34.615 0.00 0.00 0.00 2.83
447 448 7.012894 TCCAATCCATAATCATTCGGTAACAAC 59.987 37.037 0.00 0.00 0.00 3.32
448 449 6.877611 ATCCATAATCATTCGGTAACAACC 57.122 37.500 0.00 0.00 0.00 3.77
449 450 5.746284 TCCATAATCATTCGGTAACAACCA 58.254 37.500 0.00 0.00 0.00 3.67
450 451 6.361433 TCCATAATCATTCGGTAACAACCAT 58.639 36.000 0.00 0.00 0.00 3.55
451 452 6.262049 TCCATAATCATTCGGTAACAACCATG 59.738 38.462 0.00 0.00 0.00 3.66
452 453 4.370364 AATCATTCGGTAACAACCATGC 57.630 40.909 0.00 0.00 0.00 4.06
453 454 2.088423 TCATTCGGTAACAACCATGCC 58.912 47.619 0.00 0.00 0.00 4.40
454 455 1.091537 ATTCGGTAACAACCATGCCG 58.908 50.000 0.00 0.00 43.32 5.69
455 456 1.579084 TTCGGTAACAACCATGCCGC 61.579 55.000 1.31 0.00 41.89 6.53
456 457 2.328856 CGGTAACAACCATGCCGCA 61.329 57.895 0.00 0.00 35.90 5.69
457 458 1.211709 GGTAACAACCATGCCGCAC 59.788 57.895 0.00 0.00 0.00 5.34
458 459 1.241315 GGTAACAACCATGCCGCACT 61.241 55.000 0.00 0.00 0.00 4.40
459 460 0.109781 GTAACAACCATGCCGCACTG 60.110 55.000 0.00 0.00 0.00 3.66
460 461 1.861542 TAACAACCATGCCGCACTGC 61.862 55.000 0.00 0.00 0.00 4.40
461 462 3.367743 CAACCATGCCGCACTGCT 61.368 61.111 0.00 0.00 0.00 4.24
462 463 3.058160 AACCATGCCGCACTGCTC 61.058 61.111 0.00 0.00 0.00 4.26
465 466 2.509111 CATGCCGCACTGCTCGTA 60.509 61.111 0.00 0.00 0.00 3.43
466 467 2.202797 ATGCCGCACTGCTCGTAG 60.203 61.111 0.00 0.00 0.00 3.51
467 468 2.710902 ATGCCGCACTGCTCGTAGA 61.711 57.895 0.00 0.00 0.00 2.59
468 469 2.021068 ATGCCGCACTGCTCGTAGAT 62.021 55.000 0.00 0.00 33.89 1.98
469 470 1.946650 GCCGCACTGCTCGTAGATC 60.947 63.158 0.00 0.00 33.89 2.75
470 471 1.730487 CCGCACTGCTCGTAGATCT 59.270 57.895 0.00 0.00 33.89 2.75
471 472 0.101399 CCGCACTGCTCGTAGATCTT 59.899 55.000 0.00 0.00 33.89 2.40
472 473 1.469940 CCGCACTGCTCGTAGATCTTT 60.470 52.381 0.00 0.00 33.89 2.52
473 474 1.585668 CGCACTGCTCGTAGATCTTTG 59.414 52.381 0.00 0.00 33.89 2.77
474 475 2.611518 GCACTGCTCGTAGATCTTTGT 58.388 47.619 0.00 0.00 33.89 2.83
475 476 2.346847 GCACTGCTCGTAGATCTTTGTG 59.653 50.000 0.00 1.82 33.89 3.33
476 477 3.579709 CACTGCTCGTAGATCTTTGTGT 58.420 45.455 0.00 0.00 33.89 3.72
477 478 3.990469 CACTGCTCGTAGATCTTTGTGTT 59.010 43.478 0.00 0.00 33.89 3.32
478 479 3.990469 ACTGCTCGTAGATCTTTGTGTTG 59.010 43.478 0.00 0.00 33.89 3.33
479 480 4.237724 CTGCTCGTAGATCTTTGTGTTGA 58.762 43.478 0.00 0.00 33.89 3.18
480 481 4.820897 TGCTCGTAGATCTTTGTGTTGAT 58.179 39.130 0.00 0.00 33.89 2.57
481 482 4.627035 TGCTCGTAGATCTTTGTGTTGATG 59.373 41.667 0.00 0.00 33.89 3.07
482 483 4.627467 GCTCGTAGATCTTTGTGTTGATGT 59.373 41.667 0.00 0.00 33.89 3.06
483 484 5.220303 GCTCGTAGATCTTTGTGTTGATGTC 60.220 44.000 0.00 0.00 33.89 3.06
484 485 5.778862 TCGTAGATCTTTGTGTTGATGTCA 58.221 37.500 0.00 0.00 0.00 3.58
485 486 5.633601 TCGTAGATCTTTGTGTTGATGTCAC 59.366 40.000 0.00 0.00 36.48 3.67
486 487 5.635280 CGTAGATCTTTGTGTTGATGTCACT 59.365 40.000 0.00 0.00 36.83 3.41
487 488 6.146184 CGTAGATCTTTGTGTTGATGTCACTT 59.854 38.462 0.00 0.00 36.83 3.16
488 489 6.551385 AGATCTTTGTGTTGATGTCACTTC 57.449 37.500 0.00 0.00 36.83 3.01
489 490 6.057533 AGATCTTTGTGTTGATGTCACTTCA 58.942 36.000 0.00 0.00 36.83 3.02
490 491 6.713903 AGATCTTTGTGTTGATGTCACTTCAT 59.286 34.615 0.00 0.00 36.83 2.57
491 492 6.304356 TCTTTGTGTTGATGTCACTTCATC 57.696 37.500 0.00 0.00 42.95 2.92
492 493 5.239306 TCTTTGTGTTGATGTCACTTCATCC 59.761 40.000 0.00 0.00 42.24 3.51
493 494 4.356405 TGTGTTGATGTCACTTCATCCT 57.644 40.909 0.00 0.00 42.24 3.24
494 495 4.067192 TGTGTTGATGTCACTTCATCCTG 58.933 43.478 0.00 0.00 42.24 3.86
495 496 4.202346 TGTGTTGATGTCACTTCATCCTGA 60.202 41.667 0.00 0.00 42.24 3.86
496 497 4.756642 GTGTTGATGTCACTTCATCCTGAA 59.243 41.667 0.00 0.00 42.24 3.02
497 498 5.239306 GTGTTGATGTCACTTCATCCTGAAA 59.761 40.000 0.00 0.00 42.24 2.69
498 499 6.005823 TGTTGATGTCACTTCATCCTGAAAT 58.994 36.000 0.00 0.00 42.24 2.17
499 500 6.072342 TGTTGATGTCACTTCATCCTGAAATG 60.072 38.462 0.00 0.00 42.24 2.32
500 501 5.563592 TGATGTCACTTCATCCTGAAATGT 58.436 37.500 4.59 0.00 42.24 2.71
501 502 6.005823 TGATGTCACTTCATCCTGAAATGTT 58.994 36.000 4.59 0.00 42.24 2.71
502 503 6.491062 TGATGTCACTTCATCCTGAAATGTTT 59.509 34.615 4.59 0.00 42.24 2.83
503 504 6.317789 TGTCACTTCATCCTGAAATGTTTC 57.682 37.500 0.00 0.00 35.37 2.78
504 505 6.064060 TGTCACTTCATCCTGAAATGTTTCT 58.936 36.000 6.99 0.00 35.37 2.52
505 506 6.016860 TGTCACTTCATCCTGAAATGTTTCTG 60.017 38.462 6.99 6.28 35.37 3.02
506 507 6.016777 GTCACTTCATCCTGAAATGTTTCTGT 60.017 38.462 6.99 0.00 35.37 3.41
507 508 7.173218 GTCACTTCATCCTGAAATGTTTCTGTA 59.827 37.037 6.99 0.00 35.37 2.74
508 509 7.719193 TCACTTCATCCTGAAATGTTTCTGTAA 59.281 33.333 6.99 0.00 35.37 2.41
509 510 8.019669 CACTTCATCCTGAAATGTTTCTGTAAG 58.980 37.037 6.99 8.65 35.73 2.34
510 511 7.721399 ACTTCATCCTGAAATGTTTCTGTAAGT 59.279 33.333 6.99 9.10 35.73 2.24
511 512 9.219603 CTTCATCCTGAAATGTTTCTGTAAGTA 57.780 33.333 6.99 0.00 35.73 2.24
512 513 8.547967 TCATCCTGAAATGTTTCTGTAAGTAC 57.452 34.615 6.99 0.00 38.02 2.73
513 514 8.154203 TCATCCTGAAATGTTTCTGTAAGTACA 58.846 33.333 6.99 0.00 38.02 2.90
514 515 7.724305 TCCTGAAATGTTTCTGTAAGTACAC 57.276 36.000 6.99 0.00 38.02 2.90
515 516 7.276658 TCCTGAAATGTTTCTGTAAGTACACA 58.723 34.615 6.99 0.00 38.02 3.72
516 517 7.936847 TCCTGAAATGTTTCTGTAAGTACACAT 59.063 33.333 6.99 0.00 38.02 3.21
517 518 8.017373 CCTGAAATGTTTCTGTAAGTACACATG 58.983 37.037 6.99 0.00 38.02 3.21
518 519 8.669946 TGAAATGTTTCTGTAAGTACACATGA 57.330 30.769 0.00 0.00 38.02 3.07
519 520 8.556194 TGAAATGTTTCTGTAAGTACACATGAC 58.444 33.333 0.00 0.00 38.02 3.06
520 521 8.677148 AAATGTTTCTGTAAGTACACATGACT 57.323 30.769 0.00 0.00 33.80 3.41
521 522 9.772973 AAATGTTTCTGTAAGTACACATGACTA 57.227 29.630 0.00 0.00 33.80 2.59
522 523 8.988064 ATGTTTCTGTAAGTACACATGACTAG 57.012 34.615 0.00 0.00 33.80 2.57
523 524 7.375834 TGTTTCTGTAAGTACACATGACTAGG 58.624 38.462 0.00 0.00 33.76 3.02
524 525 5.578005 TCTGTAAGTACACATGACTAGGC 57.422 43.478 0.00 0.00 33.76 3.93
525 526 4.401519 TCTGTAAGTACACATGACTAGGCC 59.598 45.833 0.00 0.00 33.76 5.19
526 527 4.090819 TGTAAGTACACATGACTAGGCCA 58.909 43.478 5.01 0.00 0.00 5.36
527 528 4.528987 TGTAAGTACACATGACTAGGCCAA 59.471 41.667 5.01 0.00 0.00 4.52
528 529 4.634012 AAGTACACATGACTAGGCCAAA 57.366 40.909 5.01 0.00 0.00 3.28
529 530 4.634012 AGTACACATGACTAGGCCAAAA 57.366 40.909 5.01 0.00 0.00 2.44
530 531 4.980573 AGTACACATGACTAGGCCAAAAA 58.019 39.130 5.01 0.00 0.00 1.94
531 532 5.570320 AGTACACATGACTAGGCCAAAAAT 58.430 37.500 5.01 0.00 0.00 1.82
532 533 6.717289 AGTACACATGACTAGGCCAAAAATA 58.283 36.000 5.01 0.00 0.00 1.40
533 534 7.346471 AGTACACATGACTAGGCCAAAAATAT 58.654 34.615 5.01 0.00 0.00 1.28
534 535 8.491134 AGTACACATGACTAGGCCAAAAATATA 58.509 33.333 5.01 0.00 0.00 0.86
535 536 7.807977 ACACATGACTAGGCCAAAAATATAG 57.192 36.000 5.01 0.00 0.00 1.31
536 537 7.573710 ACACATGACTAGGCCAAAAATATAGA 58.426 34.615 5.01 0.00 0.00 1.98
537 538 8.220559 ACACATGACTAGGCCAAAAATATAGAT 58.779 33.333 5.01 0.00 0.00 1.98
538 539 9.725019 CACATGACTAGGCCAAAAATATAGATA 57.275 33.333 5.01 0.00 0.00 1.98
539 540 9.726438 ACATGACTAGGCCAAAAATATAGATAC 57.274 33.333 5.01 0.00 0.00 2.24
540 541 9.725019 CATGACTAGGCCAAAAATATAGATACA 57.275 33.333 5.01 0.86 0.00 2.29
542 543 9.555727 TGACTAGGCCAAAAATATAGATACAAC 57.444 33.333 5.01 0.00 0.00 3.32
543 544 9.555727 GACTAGGCCAAAAATATAGATACAACA 57.444 33.333 5.01 0.00 0.00 3.33
544 545 9.561069 ACTAGGCCAAAAATATAGATACAACAG 57.439 33.333 5.01 0.00 0.00 3.16
545 546 9.561069 CTAGGCCAAAAATATAGATACAACAGT 57.439 33.333 5.01 0.00 0.00 3.55
546 547 8.225603 AGGCCAAAAATATAGATACAACAGTG 57.774 34.615 5.01 0.00 0.00 3.66
547 548 8.052748 AGGCCAAAAATATAGATACAACAGTGA 58.947 33.333 5.01 0.00 0.00 3.41
548 549 8.682710 GGCCAAAAATATAGATACAACAGTGAA 58.317 33.333 0.00 0.00 0.00 3.18
549 550 9.722056 GCCAAAAATATAGATACAACAGTGAAG 57.278 33.333 0.00 0.00 0.00 3.02
550 551 9.722056 CCAAAAATATAGATACAACAGTGAAGC 57.278 33.333 0.00 0.00 0.00 3.86
551 552 9.425893 CAAAAATATAGATACAACAGTGAAGCG 57.574 33.333 0.00 0.00 0.00 4.68
552 553 8.942338 AAAATATAGATACAACAGTGAAGCGA 57.058 30.769 0.00 0.00 0.00 4.93
553 554 8.581057 AAATATAGATACAACAGTGAAGCGAG 57.419 34.615 0.00 0.00 0.00 5.03
554 555 2.611518 AGATACAACAGTGAAGCGAGC 58.388 47.619 0.00 0.00 0.00 5.03
555 556 2.029020 AGATACAACAGTGAAGCGAGCA 60.029 45.455 0.00 0.00 0.00 4.26
556 557 2.232756 TACAACAGTGAAGCGAGCAA 57.767 45.000 0.00 0.00 0.00 3.91
557 558 0.940126 ACAACAGTGAAGCGAGCAAG 59.060 50.000 0.00 0.00 0.00 4.01
558 559 1.220529 CAACAGTGAAGCGAGCAAGA 58.779 50.000 0.00 0.00 0.00 3.02
559 560 1.070309 CAACAGTGAAGCGAGCAAGAC 60.070 52.381 0.00 0.00 0.00 3.01
560 561 0.104855 ACAGTGAAGCGAGCAAGACA 59.895 50.000 0.00 0.00 0.00 3.41
561 562 0.510359 CAGTGAAGCGAGCAAGACAC 59.490 55.000 0.00 0.00 0.00 3.67
562 563 0.390860 AGTGAAGCGAGCAAGACACT 59.609 50.000 0.00 0.00 34.46 3.55
563 564 1.613925 AGTGAAGCGAGCAAGACACTA 59.386 47.619 0.00 0.00 36.94 2.74
613 614 1.059098 AGTGGTGTCCATCTGCTCAA 58.941 50.000 0.00 0.00 35.28 3.02
691 692 1.335597 CGTTCTGTGAACTCTGGCGTA 60.336 52.381 8.51 0.00 0.00 4.42
706 707 0.108992 GCGTATCCGTCAGGTCAACA 60.109 55.000 0.00 0.00 39.05 3.33
811 812 0.322975 AACAGAGAGCCGTTGAGCAT 59.677 50.000 0.00 0.00 34.23 3.79
864 865 3.249189 AGCGGTGGTGACCATGGT 61.249 61.111 19.89 19.89 43.33 3.55
881 882 4.724602 TGACAGAGAGCACGGCGC 62.725 66.667 6.90 0.00 42.91 6.53
900 907 3.749064 GACCACGGCGAGAGAGCA 61.749 66.667 16.62 0.00 39.27 4.26
911 918 2.047844 GAGAGCAAGAGCACGGCA 60.048 61.111 4.02 0.00 45.49 5.69
963 970 1.268283 GGAAGCTAGCTGTGGAGGGT 61.268 60.000 20.16 0.00 0.00 4.34
981 988 1.299321 TGCGGTGGCATTGAGATCA 59.701 52.632 0.00 0.00 46.21 2.92
982 989 0.107066 TGCGGTGGCATTGAGATCAT 60.107 50.000 0.00 0.00 46.21 2.45
983 990 0.309922 GCGGTGGCATTGAGATCATG 59.690 55.000 0.00 0.00 39.62 3.07
1006 1013 1.227205 GCTCCGAGCTCCATGTCTG 60.227 63.158 13.42 0.00 38.45 3.51
1009 1016 2.584418 CGAGCTCCATGTCTGCCG 60.584 66.667 8.47 0.00 0.00 5.69
1080 1087 1.004277 CTGTCTTCGTCTGTCCGTGC 61.004 60.000 0.00 0.00 0.00 5.34
1086 1093 4.357947 GTCTGTCCGTGCTGCCGA 62.358 66.667 11.24 0.00 0.00 5.54
1127 1134 1.372997 CTCACACACCGAGGAACCG 60.373 63.158 0.00 0.00 0.00 4.44
1136 1143 1.585521 CGAGGAACCGGAATCGTCG 60.586 63.158 28.27 28.27 45.05 5.12
1152 1159 1.999735 CGTCGGTTCTATGTGTGCAAT 59.000 47.619 0.00 0.00 0.00 3.56
1216 1223 0.749049 GGGATCTTTGAGCAATGGGC 59.251 55.000 0.00 0.00 45.30 5.36
1268 1277 2.162408 GCTTCTTTCTTTGGGTCGATGG 59.838 50.000 0.00 0.00 0.00 3.51
1340 1349 0.107214 CACATGCTACCCCGAACCAT 60.107 55.000 0.00 0.00 0.00 3.55
1377 1386 1.482593 GCTCCGGAAGAAGAGATGGAA 59.517 52.381 5.23 0.00 0.00 3.53
1487 1496 7.606073 ACCAATACCCATTTGCAAATACTTTTC 59.394 33.333 23.69 0.00 0.00 2.29
1525 1534 2.919666 AATCGCACTGGTTGTAATGC 57.080 45.000 0.00 0.00 34.66 3.56
1827 1847 1.401761 CATCCAATTCGGCCCATTCA 58.598 50.000 0.00 0.00 33.14 2.57
1859 1879 8.373048 TCTCTTGCGTGTTTTTCTATTTTCTA 57.627 30.769 0.00 0.00 0.00 2.10
1907 1928 6.222389 TCATAATGCTGAAACTTTTTGTGGG 58.778 36.000 0.00 0.00 0.00 4.61
1929 1950 7.285401 GTGGGAGCTAATTGAATTATTCCAGAA 59.715 37.037 20.68 9.98 33.47 3.02
2221 2285 2.489437 GGGTTTGTGGTGTTTAGGGCTA 60.489 50.000 0.00 0.00 0.00 3.93
2334 2402 8.519492 AAAAATAGTTTGGATGACGAAACATG 57.481 30.769 0.00 0.00 43.62 3.21
2335 2403 7.447374 AAATAGTTTGGATGACGAAACATGA 57.553 32.000 0.00 0.00 43.62 3.07
2336 2404 4.749245 AGTTTGGATGACGAAACATGAC 57.251 40.909 0.00 0.00 43.62 3.06
2337 2405 4.133820 AGTTTGGATGACGAAACATGACA 58.866 39.130 0.00 0.00 43.62 3.58
2338 2406 4.024048 AGTTTGGATGACGAAACATGACAC 60.024 41.667 0.00 0.00 43.62 3.67
2339 2407 3.401033 TGGATGACGAAACATGACACT 57.599 42.857 0.00 0.00 0.00 3.55
2340 2408 4.529109 TGGATGACGAAACATGACACTA 57.471 40.909 0.00 0.00 0.00 2.74
2341 2409 4.242475 TGGATGACGAAACATGACACTAC 58.758 43.478 0.00 0.00 0.00 2.73
2342 2410 4.242475 GGATGACGAAACATGACACTACA 58.758 43.478 0.00 0.00 0.00 2.74
2400 2468 5.512434 CCTTTGTTTTGCACTGAAATTTTGC 59.488 36.000 6.42 6.42 36.76 3.68
2449 2517 0.033781 CACTGCCACATGGTTTTGGG 59.966 55.000 0.00 0.00 37.57 4.12
2474 2542 1.339929 GTGGCACTTGGTTTAGGGTTG 59.660 52.381 11.13 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.355169 ACGATTATTCTACGTTTCTATGCCTTA 58.645 33.333 0.00 0.00 36.91 2.69
52 53 8.903820 GTGGGTATAATCAGCTGTAATTTCTTT 58.096 33.333 14.67 0.00 0.00 2.52
53 54 8.275040 AGTGGGTATAATCAGCTGTAATTTCTT 58.725 33.333 14.67 0.50 0.00 2.52
66 67 6.503924 ACCATAATGCCTAGTGGGTATAATCA 59.496 38.462 0.00 0.00 39.53 2.57
92 93 2.290641 GCTTTATTATCACCTGTGCCGG 59.709 50.000 0.00 0.00 0.00 6.13
141 142 5.039920 TGATGTATGAGCTGTATTTGCCT 57.960 39.130 0.00 0.00 0.00 4.75
221 222 3.627395 TTTGTGCTATCTGAATCCGGT 57.373 42.857 0.00 0.00 0.00 5.28
271 272 4.338379 AAGAAGACACTGAGGTAACCAC 57.662 45.455 0.00 0.00 37.17 4.16
311 312 4.804597 ACTGGACATGCAGGTACTAGATA 58.195 43.478 15.85 0.00 36.02 1.98
317 318 1.550524 TGAGACTGGACATGCAGGTAC 59.449 52.381 6.81 6.81 0.00 3.34
349 350 5.832568 TGTGTACATGATTGTCAACGTAC 57.167 39.130 0.00 12.45 38.62 3.67
445 446 3.058160 GAGCAGTGCGGCATGGTT 61.058 61.111 10.00 0.00 35.83 3.67
448 449 2.509111 TACGAGCAGTGCGGCATG 60.509 61.111 10.00 6.98 35.83 4.06
449 450 2.021068 ATCTACGAGCAGTGCGGCAT 62.021 55.000 10.00 0.00 35.83 4.40
450 451 2.613739 GATCTACGAGCAGTGCGGCA 62.614 60.000 10.00 0.00 35.83 5.69
451 452 1.946650 GATCTACGAGCAGTGCGGC 60.947 63.158 10.00 5.17 0.00 6.53
452 453 0.101399 AAGATCTACGAGCAGTGCGG 59.899 55.000 10.00 8.60 0.00 5.69
453 454 1.585668 CAAAGATCTACGAGCAGTGCG 59.414 52.381 10.00 0.00 0.00 5.34
454 455 2.346847 CACAAAGATCTACGAGCAGTGC 59.653 50.000 7.13 7.13 0.00 4.40
455 456 3.579709 ACACAAAGATCTACGAGCAGTG 58.420 45.455 0.00 0.53 0.00 3.66
456 457 3.944055 ACACAAAGATCTACGAGCAGT 57.056 42.857 0.00 0.00 0.00 4.40
457 458 4.237724 TCAACACAAAGATCTACGAGCAG 58.762 43.478 0.00 0.00 0.00 4.24
458 459 4.251543 TCAACACAAAGATCTACGAGCA 57.748 40.909 0.00 0.00 0.00 4.26
459 460 4.627467 ACATCAACACAAAGATCTACGAGC 59.373 41.667 0.00 0.00 0.00 5.03
460 461 5.863935 TGACATCAACACAAAGATCTACGAG 59.136 40.000 0.00 0.00 0.00 4.18
461 462 5.633601 GTGACATCAACACAAAGATCTACGA 59.366 40.000 0.00 0.00 38.05 3.43
462 463 5.635280 AGTGACATCAACACAAAGATCTACG 59.365 40.000 0.00 0.00 40.25 3.51
463 464 7.171508 TGAAGTGACATCAACACAAAGATCTAC 59.828 37.037 0.00 0.00 40.25 2.59
464 465 7.216494 TGAAGTGACATCAACACAAAGATCTA 58.784 34.615 0.00 0.00 40.25 1.98
465 466 6.057533 TGAAGTGACATCAACACAAAGATCT 58.942 36.000 0.00 0.00 40.25 2.75
466 467 6.304356 TGAAGTGACATCAACACAAAGATC 57.696 37.500 0.00 0.00 40.25 2.75
467 468 6.072286 GGATGAAGTGACATCAACACAAAGAT 60.072 38.462 0.00 0.00 45.68 2.40
468 469 5.239306 GGATGAAGTGACATCAACACAAAGA 59.761 40.000 0.00 0.00 45.68 2.52
469 470 5.240183 AGGATGAAGTGACATCAACACAAAG 59.760 40.000 0.00 0.00 45.68 2.77
470 471 5.008911 CAGGATGAAGTGACATCAACACAAA 59.991 40.000 0.00 0.00 45.68 2.83
471 472 4.516321 CAGGATGAAGTGACATCAACACAA 59.484 41.667 0.00 0.00 45.68 3.33
472 473 4.067192 CAGGATGAAGTGACATCAACACA 58.933 43.478 0.00 0.00 45.68 3.72
473 474 4.318332 TCAGGATGAAGTGACATCAACAC 58.682 43.478 0.00 0.00 45.97 3.32
474 475 4.622260 TCAGGATGAAGTGACATCAACA 57.378 40.909 0.00 0.00 45.97 3.33
488 489 8.230486 GTGTACTTACAGAAACATTTCAGGATG 58.770 37.037 7.10 1.14 39.61 3.51
489 490 7.936847 TGTGTACTTACAGAAACATTTCAGGAT 59.063 33.333 7.10 0.00 39.61 3.24
490 491 7.276658 TGTGTACTTACAGAAACATTTCAGGA 58.723 34.615 7.10 0.00 39.61 3.86
491 492 7.490962 TGTGTACTTACAGAAACATTTCAGG 57.509 36.000 7.10 1.63 39.61 3.86
492 493 8.773645 TCATGTGTACTTACAGAAACATTTCAG 58.226 33.333 7.10 1.51 39.61 3.02
493 494 8.556194 GTCATGTGTACTTACAGAAACATTTCA 58.444 33.333 7.10 0.00 39.61 2.69
494 495 8.774586 AGTCATGTGTACTTACAGAAACATTTC 58.225 33.333 0.00 0.00 36.78 2.17
495 496 8.677148 AGTCATGTGTACTTACAGAAACATTT 57.323 30.769 0.00 0.00 36.78 2.32
496 497 9.424319 CTAGTCATGTGTACTTACAGAAACATT 57.576 33.333 0.00 0.00 36.78 2.71
497 498 8.035394 CCTAGTCATGTGTACTTACAGAAACAT 58.965 37.037 0.00 0.00 36.78 2.71
498 499 7.375834 CCTAGTCATGTGTACTTACAGAAACA 58.624 38.462 0.00 0.00 36.78 2.83
499 500 6.310711 GCCTAGTCATGTGTACTTACAGAAAC 59.689 42.308 0.00 0.00 36.78 2.78
500 501 6.395629 GCCTAGTCATGTGTACTTACAGAAA 58.604 40.000 0.00 0.00 36.78 2.52
501 502 5.105473 GGCCTAGTCATGTGTACTTACAGAA 60.105 44.000 0.00 0.00 36.78 3.02
502 503 4.401519 GGCCTAGTCATGTGTACTTACAGA 59.598 45.833 0.00 0.00 36.78 3.41
503 504 4.159693 TGGCCTAGTCATGTGTACTTACAG 59.840 45.833 3.32 0.00 36.78 2.74
504 505 4.090819 TGGCCTAGTCATGTGTACTTACA 58.909 43.478 3.32 0.00 34.63 2.41
505 506 4.730949 TGGCCTAGTCATGTGTACTTAC 57.269 45.455 3.32 0.00 0.00 2.34
506 507 5.748670 TTTGGCCTAGTCATGTGTACTTA 57.251 39.130 3.32 0.00 0.00 2.24
507 508 4.634012 TTTGGCCTAGTCATGTGTACTT 57.366 40.909 3.32 0.00 0.00 2.24
508 509 4.634012 TTTTGGCCTAGTCATGTGTACT 57.366 40.909 3.32 0.00 0.00 2.73
509 510 5.897377 ATTTTTGGCCTAGTCATGTGTAC 57.103 39.130 3.32 0.00 0.00 2.90
510 511 8.710239 TCTATATTTTTGGCCTAGTCATGTGTA 58.290 33.333 3.32 0.00 0.00 2.90
511 512 7.573710 TCTATATTTTTGGCCTAGTCATGTGT 58.426 34.615 3.32 0.00 0.00 3.72
512 513 8.627208 ATCTATATTTTTGGCCTAGTCATGTG 57.373 34.615 3.32 0.00 0.00 3.21
513 514 9.726438 GTATCTATATTTTTGGCCTAGTCATGT 57.274 33.333 3.32 0.00 0.00 3.21
514 515 9.725019 TGTATCTATATTTTTGGCCTAGTCATG 57.275 33.333 3.32 0.00 0.00 3.07
516 517 9.555727 GTTGTATCTATATTTTTGGCCTAGTCA 57.444 33.333 3.32 0.00 0.00 3.41
517 518 9.555727 TGTTGTATCTATATTTTTGGCCTAGTC 57.444 33.333 3.32 0.00 0.00 2.59
518 519 9.561069 CTGTTGTATCTATATTTTTGGCCTAGT 57.439 33.333 3.32 0.00 0.00 2.57
519 520 9.561069 ACTGTTGTATCTATATTTTTGGCCTAG 57.439 33.333 3.32 0.00 0.00 3.02
520 521 9.337396 CACTGTTGTATCTATATTTTTGGCCTA 57.663 33.333 3.32 0.00 0.00 3.93
521 522 8.052748 TCACTGTTGTATCTATATTTTTGGCCT 58.947 33.333 3.32 0.00 0.00 5.19
522 523 8.220755 TCACTGTTGTATCTATATTTTTGGCC 57.779 34.615 0.00 0.00 0.00 5.36
523 524 9.722056 CTTCACTGTTGTATCTATATTTTTGGC 57.278 33.333 0.00 0.00 0.00 4.52
524 525 9.722056 GCTTCACTGTTGTATCTATATTTTTGG 57.278 33.333 0.00 0.00 0.00 3.28
525 526 9.425893 CGCTTCACTGTTGTATCTATATTTTTG 57.574 33.333 0.00 0.00 0.00 2.44
526 527 9.378551 TCGCTTCACTGTTGTATCTATATTTTT 57.621 29.630 0.00 0.00 0.00 1.94
527 528 8.942338 TCGCTTCACTGTTGTATCTATATTTT 57.058 30.769 0.00 0.00 0.00 1.82
528 529 7.169982 GCTCGCTTCACTGTTGTATCTATATTT 59.830 37.037 0.00 0.00 0.00 1.40
529 530 6.642950 GCTCGCTTCACTGTTGTATCTATATT 59.357 38.462 0.00 0.00 0.00 1.28
530 531 6.153067 GCTCGCTTCACTGTTGTATCTATAT 58.847 40.000 0.00 0.00 0.00 0.86
531 532 5.067283 TGCTCGCTTCACTGTTGTATCTATA 59.933 40.000 0.00 0.00 0.00 1.31
532 533 4.142160 TGCTCGCTTCACTGTTGTATCTAT 60.142 41.667 0.00 0.00 0.00 1.98
533 534 3.192633 TGCTCGCTTCACTGTTGTATCTA 59.807 43.478 0.00 0.00 0.00 1.98
534 535 2.029020 TGCTCGCTTCACTGTTGTATCT 60.029 45.455 0.00 0.00 0.00 1.98
535 536 2.337583 TGCTCGCTTCACTGTTGTATC 58.662 47.619 0.00 0.00 0.00 2.24
536 537 2.455674 TGCTCGCTTCACTGTTGTAT 57.544 45.000 0.00 0.00 0.00 2.29
537 538 2.135139 CTTGCTCGCTTCACTGTTGTA 58.865 47.619 0.00 0.00 0.00 2.41
538 539 0.940126 CTTGCTCGCTTCACTGTTGT 59.060 50.000 0.00 0.00 0.00 3.32
539 540 1.070309 GTCTTGCTCGCTTCACTGTTG 60.070 52.381 0.00 0.00 0.00 3.33
540 541 1.221414 GTCTTGCTCGCTTCACTGTT 58.779 50.000 0.00 0.00 0.00 3.16
541 542 0.104855 TGTCTTGCTCGCTTCACTGT 59.895 50.000 0.00 0.00 0.00 3.55
542 543 0.510359 GTGTCTTGCTCGCTTCACTG 59.490 55.000 0.00 0.00 0.00 3.66
543 544 0.390860 AGTGTCTTGCTCGCTTCACT 59.609 50.000 0.00 0.00 0.00 3.41
544 545 2.065993 TAGTGTCTTGCTCGCTTCAC 57.934 50.000 0.00 0.00 0.00 3.18
545 546 3.319137 AATAGTGTCTTGCTCGCTTCA 57.681 42.857 0.00 0.00 0.00 3.02
546 547 4.083802 ACAAAATAGTGTCTTGCTCGCTTC 60.084 41.667 0.00 0.00 0.00 3.86
547 548 3.815401 ACAAAATAGTGTCTTGCTCGCTT 59.185 39.130 0.00 0.00 0.00 4.68
548 549 3.403038 ACAAAATAGTGTCTTGCTCGCT 58.597 40.909 0.00 0.00 0.00 4.93
549 550 3.813529 ACAAAATAGTGTCTTGCTCGC 57.186 42.857 0.00 0.00 0.00 5.03
550 551 4.330074 CCCTACAAAATAGTGTCTTGCTCG 59.670 45.833 0.00 0.00 32.75 5.03
551 552 5.246307 ACCCTACAAAATAGTGTCTTGCTC 58.754 41.667 0.00 0.00 32.75 4.26
552 553 5.242795 ACCCTACAAAATAGTGTCTTGCT 57.757 39.130 0.00 0.00 32.75 3.91
553 554 5.959618 AACCCTACAAAATAGTGTCTTGC 57.040 39.130 0.00 0.00 32.75 4.01
563 564 9.884636 GCAAAAGGATAATTAACCCTACAAAAT 57.115 29.630 8.09 0.00 0.00 1.82
613 614 1.838112 TTCGCATCTGAGGGCAAAAT 58.162 45.000 5.18 0.00 0.00 1.82
691 692 3.750371 TCAAAATGTTGACCTGACGGAT 58.250 40.909 0.00 0.00 38.88 4.18
706 707 2.711542 CTGTAAGGGCCGAGTCAAAAT 58.288 47.619 0.00 0.00 0.00 1.82
825 826 3.244078 TGTCGCCCACTTATATAGCAAGG 60.244 47.826 0.00 0.00 0.00 3.61
826 827 3.990092 TGTCGCCCACTTATATAGCAAG 58.010 45.455 0.00 0.00 0.00 4.01
827 828 3.802329 GCTGTCGCCCACTTATATAGCAA 60.802 47.826 0.00 0.00 0.00 3.91
864 865 4.724602 GCGCCGTGCTCTCTGTCA 62.725 66.667 0.00 0.00 41.73 3.58
881 882 2.487428 CTCTCTCGCCGTGGTCAG 59.513 66.667 0.00 0.00 0.00 3.51
900 907 0.320247 CTTCTCACTGCCGTGCTCTT 60.320 55.000 2.98 0.00 40.99 2.85
911 918 1.824230 CTCCACAGCTAGCTTCTCACT 59.176 52.381 16.46 0.00 0.00 3.41
915 922 1.621672 GCCCTCCACAGCTAGCTTCT 61.622 60.000 16.46 0.00 0.00 2.85
1080 1087 1.416813 GATCAACACTCGCTCGGCAG 61.417 60.000 0.00 0.00 0.00 4.85
1086 1093 1.513158 CCTCCGATCAACACTCGCT 59.487 57.895 0.00 0.00 34.84 4.93
1127 1134 2.858344 CACACATAGAACCGACGATTCC 59.142 50.000 0.00 0.00 0.00 3.01
1136 1143 5.449588 CCATTCTCATTGCACACATAGAACC 60.450 44.000 0.00 0.00 0.00 3.62
1152 1159 2.438021 CCCGATTCTTACCCCATTCTCA 59.562 50.000 0.00 0.00 0.00 3.27
1216 1223 3.187022 TGCATGAACACGAAACAGATCAG 59.813 43.478 0.00 0.00 0.00 2.90
1340 1349 2.048597 CTCGTGTTGCGGCCACTA 60.049 61.111 2.24 0.00 41.72 2.74
1377 1386 2.203195 TCAGTGCGTGCTTTGCCT 60.203 55.556 0.00 0.00 0.00 4.75
1487 1496 4.151689 CGATTACCATACCTACAAATGCCG 59.848 45.833 0.00 0.00 0.00 5.69
1525 1534 6.211587 TCATGCCTTTCCATACATTTTCAG 57.788 37.500 0.00 0.00 0.00 3.02
1758 1778 4.226427 TGGCTCTATGCTCTGAATTTGT 57.774 40.909 0.00 0.00 42.39 2.83
1771 1791 4.972875 GCCTGCACTTGGCTCTAT 57.027 55.556 8.16 0.00 46.38 1.98
1827 1847 1.705997 AACACGCAAGAGAACCCCCT 61.706 55.000 0.00 0.00 43.62 4.79
1907 1928 8.225603 TGGTTCTGGAATAATTCAATTAGCTC 57.774 34.615 0.00 0.00 0.00 4.09
2143 2207 2.231215 TTTTGTGCATTTTCCACCCG 57.769 45.000 0.00 0.00 32.30 5.28
2221 2285 1.679977 TCCTAGCGGTTACCAGCGT 60.680 57.895 1.13 0.00 45.98 5.07
2314 2382 5.178623 GTGTCATGTTTCGTCATCCAAACTA 59.821 40.000 0.00 0.00 34.22 2.24
2315 2383 4.024048 GTGTCATGTTTCGTCATCCAAACT 60.024 41.667 0.00 0.00 34.22 2.66
2317 2385 4.133820 AGTGTCATGTTTCGTCATCCAAA 58.866 39.130 0.00 0.00 0.00 3.28
2318 2386 3.738982 AGTGTCATGTTTCGTCATCCAA 58.261 40.909 0.00 0.00 0.00 3.53
2319 2387 3.401033 AGTGTCATGTTTCGTCATCCA 57.599 42.857 0.00 0.00 0.00 3.41
2320 2388 4.091509 GTGTAGTGTCATGTTTCGTCATCC 59.908 45.833 0.00 0.00 0.00 3.51
2321 2389 4.201494 CGTGTAGTGTCATGTTTCGTCATC 60.201 45.833 0.00 0.00 0.00 2.92
2322 2390 3.673338 CGTGTAGTGTCATGTTTCGTCAT 59.327 43.478 0.00 0.00 0.00 3.06
2323 2391 3.047093 CGTGTAGTGTCATGTTTCGTCA 58.953 45.455 0.00 0.00 0.00 4.35
2324 2392 3.047796 ACGTGTAGTGTCATGTTTCGTC 58.952 45.455 0.00 0.00 34.41 4.20
2325 2393 2.792674 CACGTGTAGTGTCATGTTTCGT 59.207 45.455 7.58 0.00 45.51 3.85
2326 2394 3.418281 CACGTGTAGTGTCATGTTTCG 57.582 47.619 7.58 0.00 45.51 3.46
2337 2405 2.939756 TGTGCAAACATTCACGTGTAGT 59.060 40.909 16.51 9.78 36.06 2.73
2338 2406 3.288242 GTGTGCAAACATTCACGTGTAG 58.712 45.455 16.51 9.12 36.06 2.74
2339 2407 2.285892 CGTGTGCAAACATTCACGTGTA 60.286 45.455 16.51 6.35 45.26 2.90
2340 2408 1.530852 CGTGTGCAAACATTCACGTGT 60.531 47.619 16.51 0.00 45.26 4.49
2341 2409 1.111667 CGTGTGCAAACATTCACGTG 58.888 50.000 9.94 9.94 45.26 4.49
2342 2410 3.525059 CGTGTGCAAACATTCACGT 57.475 47.368 14.91 0.00 45.26 4.49
2400 2468 2.223711 CGTTTTCAACCTTCCAACCCTG 60.224 50.000 0.00 0.00 0.00 4.45
2449 2517 3.335579 CCTAAACCAAGTGCCACTCTAC 58.664 50.000 0.00 0.00 0.00 2.59
2474 2542 1.073284 TCCTAAACCAAGTGCCACTCC 59.927 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.