Multiple sequence alignment - TraesCS4B01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G282900 chr4B 100.000 5458 0 0 1 5458 566234511 566239968 0.000000e+00 10080
1 TraesCS4B01G282900 chr4A 85.470 2753 137 103 61 2638 14168935 14166271 0.000000e+00 2625
2 TraesCS4B01G282900 chr4A 93.342 751 31 2 3904 4637 14164715 14163967 0.000000e+00 1092
3 TraesCS4B01G282900 chr4A 88.662 538 44 7 2781 3309 14166211 14165682 1.660000e-179 640
4 TraesCS4B01G282900 chr4A 88.430 363 21 16 3519 3865 14165166 14164809 8.460000e-113 418
5 TraesCS4B01G282900 chr4A 85.238 420 38 13 5041 5458 14163724 14163327 1.410000e-110 411
6 TraesCS4B01G282900 chr4A 92.188 256 12 4 4675 4925 14163968 14163716 6.720000e-94 355
7 TraesCS4B01G282900 chr4A 85.764 288 11 10 3264 3523 14165686 14165401 1.500000e-70 278
8 TraesCS4B01G282900 chr4D 92.301 1078 45 20 998 2044 453048399 453049469 0.000000e+00 1496
9 TraesCS4B01G282900 chr4D 93.619 1003 30 11 3909 4907 453051319 453052291 0.000000e+00 1467
10 TraesCS4B01G282900 chr4D 90.000 1140 58 11 2779 3865 453050100 453051236 0.000000e+00 1423
11 TraesCS4B01G282900 chr4D 89.527 993 54 17 3 965 453047427 453048399 0.000000e+00 1212
12 TraesCS4B01G282900 chr4D 84.331 568 29 24 2081 2638 453049466 453049983 8.160000e-138 501
13 TraesCS4B01G282900 chr4D 88.084 428 34 9 5041 5458 453052295 453052715 4.910000e-135 492
14 TraesCS4B01G282900 chr2B 96.624 237 6 2 1143 1379 159849484 159849250 5.130000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G282900 chr4B 566234511 566239968 5457 False 10080.000000 10080 100.000000 1 5458 1 chr4B.!!$F1 5457
1 TraesCS4B01G282900 chr4A 14163327 14168935 5608 True 831.285714 2625 88.442000 61 5458 7 chr4A.!!$R1 5397
2 TraesCS4B01G282900 chr4D 453047427 453052715 5288 False 1098.500000 1496 89.643667 3 5458 6 chr4D.!!$F1 5455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1030 0.105224 TGGCTCGTTCGTTCTTGGAA 59.895 50.0 0.0 0.0 0.00 3.53 F
1815 1949 0.182299 CTCCTCCATCTTTCCCCAGC 59.818 60.0 0.0 0.0 0.00 4.85 F
2374 2572 0.108207 CATGCCTCACATCTCCCTCC 59.892 60.0 0.0 0.0 36.64 4.30 F
2712 2919 0.108804 ACGACCTGCGAATACCACTG 60.109 55.0 0.0 0.0 44.57 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2414 0.102844 GCGCATACGTTGGGGTAGTA 59.897 55.000 0.30 0.00 42.83 1.82 R
2693 2900 0.108804 CAGTGGTATTCGCAGGTCGT 60.109 55.000 0.00 0.00 39.67 4.34 R
4337 4958 1.138883 CACGTCGTCGATGGTCCAT 59.861 57.895 18.28 3.26 40.62 3.41 R
4646 5288 0.251209 TAGCCACTCTCACGGTCACT 60.251 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.829222 GTACGTGGAAGGATCCTTGGA 59.171 52.381 31.79 14.44 46.70 3.53
35 36 1.279271 ACGTGGAAGGATCCTTGGAAG 59.721 52.381 31.79 19.82 46.70 3.46
37 38 2.500098 CGTGGAAGGATCCTTGGAAGTA 59.500 50.000 31.79 8.11 46.70 2.24
43 44 5.163045 GGAAGGATCCTTGGAAGTATGGAAT 60.163 44.000 31.79 1.59 42.93 3.01
47 48 5.163152 GGATCCTTGGAAGTATGGAATGAGT 60.163 44.000 3.84 0.00 31.87 3.41
81 82 3.081133 CTACGCCATGTCGTGTGC 58.919 61.111 12.77 0.00 43.21 4.57
135 136 2.202440 CGAGTCCACGTACGCAGG 60.202 66.667 16.72 17.72 0.00 4.85
162 163 1.016653 GCCGACCTGAGCAAAGAGAC 61.017 60.000 0.00 0.00 0.00 3.36
163 164 0.318441 CCGACCTGAGCAAAGAGACA 59.682 55.000 0.00 0.00 0.00 3.41
182 183 3.013921 ACAGAGACGGTGAGAGATCTTC 58.986 50.000 0.00 0.00 0.00 2.87
365 368 0.652592 CACCGGAATGAATGAGTCGC 59.347 55.000 9.46 0.00 0.00 5.19
386 389 2.829206 CGAACCACGCCAAGCAACA 61.829 57.895 0.00 0.00 34.51 3.33
542 576 2.928396 CCAACCCCACTCCGTCCT 60.928 66.667 0.00 0.00 0.00 3.85
656 706 3.385384 CGGGACTCAGCTGGCTCA 61.385 66.667 15.13 0.00 0.00 4.26
658 708 2.289532 GGGACTCAGCTGGCTCACT 61.290 63.158 15.13 0.00 0.00 3.41
669 719 2.124403 GCTCACTGCCATCTGGGG 60.124 66.667 0.00 0.00 37.04 4.96
833 883 5.404946 GCCTACTCGCATTATAATAACCGA 58.595 41.667 0.00 6.31 0.00 4.69
844 894 2.510064 AATAACCGAACGAGGCCGCA 62.510 55.000 7.44 0.00 39.95 5.69
852 902 4.093952 CGAGGCCGCACAAGCAAG 62.094 66.667 7.44 0.00 42.27 4.01
853 903 2.980233 GAGGCCGCACAAGCAAGT 60.980 61.111 0.00 0.00 42.27 3.16
854 904 2.519302 AGGCCGCACAAGCAAGTT 60.519 55.556 0.00 0.00 42.27 2.66
855 905 1.228124 AGGCCGCACAAGCAAGTTA 60.228 52.632 0.00 0.00 42.27 2.24
856 906 1.210155 GGCCGCACAAGCAAGTTAG 59.790 57.895 0.00 0.00 42.27 2.34
857 907 1.442688 GCCGCACAAGCAAGTTAGC 60.443 57.895 0.00 0.00 42.27 3.09
858 908 1.948508 CCGCACAAGCAAGTTAGCA 59.051 52.632 0.00 0.00 42.27 3.49
859 909 0.310543 CCGCACAAGCAAGTTAGCAA 59.689 50.000 0.00 0.00 42.27 3.91
967 1030 0.105224 TGGCTCGTTCGTTCTTGGAA 59.895 50.000 0.00 0.00 0.00 3.53
968 1031 0.790814 GGCTCGTTCGTTCTTGGAAG 59.209 55.000 0.00 0.00 0.00 3.46
970 1033 1.865340 GCTCGTTCGTTCTTGGAAGTT 59.135 47.619 0.00 0.00 0.00 2.66
972 1035 2.206750 TCGTTCGTTCTTGGAAGTTGG 58.793 47.619 0.00 0.00 0.00 3.77
973 1036 2.159071 TCGTTCGTTCTTGGAAGTTGGA 60.159 45.455 0.00 0.00 0.00 3.53
974 1037 2.610374 CGTTCGTTCTTGGAAGTTGGAA 59.390 45.455 0.00 0.00 0.00 3.53
976 1039 2.567985 TCGTTCTTGGAAGTTGGAACC 58.432 47.619 0.00 0.00 35.90 3.62
977 1040 1.263217 CGTTCTTGGAAGTTGGAACCG 59.737 52.381 0.00 0.00 35.90 4.44
978 1041 2.567985 GTTCTTGGAAGTTGGAACCGA 58.432 47.619 0.00 0.00 33.98 4.69
979 1042 2.543777 TCTTGGAAGTTGGAACCGAG 57.456 50.000 0.00 0.00 36.75 4.63
980 1043 0.875059 CTTGGAAGTTGGAACCGAGC 59.125 55.000 0.00 0.00 0.00 5.03
981 1044 0.882927 TTGGAAGTTGGAACCGAGCG 60.883 55.000 0.00 0.00 0.00 5.03
982 1045 1.301479 GGAAGTTGGAACCGAGCGT 60.301 57.895 0.00 0.00 0.00 5.07
984 1047 0.599204 GAAGTTGGAACCGAGCGTGA 60.599 55.000 0.00 0.00 0.00 4.35
985 1048 0.878961 AAGTTGGAACCGAGCGTGAC 60.879 55.000 0.00 0.00 0.00 3.67
986 1049 1.300697 GTTGGAACCGAGCGTGACT 60.301 57.895 0.00 0.00 0.00 3.41
988 1051 3.112709 GGAACCGAGCGTGACTGC 61.113 66.667 0.00 0.00 0.00 4.40
989 1052 3.470567 GAACCGAGCGTGACTGCG 61.471 66.667 0.00 0.00 40.67 5.18
990 1053 4.280494 AACCGAGCGTGACTGCGT 62.280 61.111 0.00 0.00 40.67 5.24
992 1055 4.700365 CCGAGCGTGACTGCGTGA 62.700 66.667 0.00 0.00 40.67 4.35
993 1056 3.168604 CGAGCGTGACTGCGTGAG 61.169 66.667 0.00 0.00 40.67 3.51
1170 1233 4.681978 GCCGACCTCCGTGTGCTT 62.682 66.667 0.00 0.00 36.31 3.91
1262 1335 1.635487 TCCTTCCATGCTTACCTTGCT 59.365 47.619 0.00 0.00 0.00 3.91
1277 1359 2.126850 GCTCGCGCCTTTGGTTTC 60.127 61.111 0.00 0.00 0.00 2.78
1281 1363 2.908073 CGCGCCTTTGGTTTCTGCT 61.908 57.895 0.00 0.00 0.00 4.24
1695 1811 5.103813 TCCATCCATTCATTCATTCACCTCT 60.104 40.000 0.00 0.00 0.00 3.69
1705 1821 4.753662 TCACCTCTACCCGCCGCT 62.754 66.667 0.00 0.00 0.00 5.52
1707 1823 2.043652 ACCTCTACCCGCCGCTAA 60.044 61.111 0.00 0.00 0.00 3.09
1708 1824 1.457079 ACCTCTACCCGCCGCTAAT 60.457 57.895 0.00 0.00 0.00 1.73
1728 1853 3.680786 CACAGTCCACGCTCCCGA 61.681 66.667 0.00 0.00 38.29 5.14
1776 1910 1.677300 ATTTCCGCCGCATCAACCA 60.677 52.632 0.00 0.00 0.00 3.67
1811 1945 1.202867 GCATCCTCCTCCATCTTTCCC 60.203 57.143 0.00 0.00 0.00 3.97
1813 1947 0.421495 TCCTCCTCCATCTTTCCCCA 59.579 55.000 0.00 0.00 0.00 4.96
1814 1948 0.842635 CCTCCTCCATCTTTCCCCAG 59.157 60.000 0.00 0.00 0.00 4.45
1815 1949 0.182299 CTCCTCCATCTTTCCCCAGC 59.818 60.000 0.00 0.00 0.00 4.85
1840 1974 5.103643 ACAGTACCTTTTCTTTCCCCTTTCT 60.104 40.000 0.00 0.00 0.00 2.52
1841 1975 6.102174 ACAGTACCTTTTCTTTCCCCTTTCTA 59.898 38.462 0.00 0.00 0.00 2.10
1846 1980 3.434940 TTCTTTCCCCTTTCTAGCACC 57.565 47.619 0.00 0.00 0.00 5.01
1972 2121 4.052229 CGTCCCCACGCGTCTTCT 62.052 66.667 9.86 0.00 39.69 2.85
2019 2169 2.346545 GCTTTTGCGCATGATCTTTTCC 59.653 45.455 12.75 0.00 34.86 3.13
2103 2263 1.066918 CCGGCACATAGGACGTACC 59.933 63.158 0.00 0.00 39.35 3.34
2152 2339 6.070021 ACTGAGAAAGATCCACCATGTAATCA 60.070 38.462 0.00 0.00 0.00 2.57
2213 2400 7.687941 AAAAGCGGTTGGATAATGGATATAG 57.312 36.000 0.00 0.00 0.00 1.31
2216 2403 7.113658 AGCGGTTGGATAATGGATATAGTAG 57.886 40.000 0.00 0.00 0.00 2.57
2274 2466 3.263425 ACAGTTGTTATCTTGGGATCCGT 59.737 43.478 5.45 0.00 33.71 4.69
2325 2517 1.141019 CATGCCATTGCCTCACTGC 59.859 57.895 0.00 0.00 36.33 4.40
2333 2525 2.133359 TTGCCTCACTGCTCATGGCT 62.133 55.000 0.00 0.00 43.57 4.75
2346 2538 3.497640 GCTCATGGCTGTCATTACTGATC 59.502 47.826 0.00 0.00 38.06 2.92
2349 2541 3.548745 TGGCTGTCATTACTGATCCTG 57.451 47.619 0.00 0.00 32.98 3.86
2350 2542 2.216898 GGCTGTCATTACTGATCCTGC 58.783 52.381 0.00 0.00 32.98 4.85
2351 2543 2.420547 GGCTGTCATTACTGATCCTGCA 60.421 50.000 0.00 0.00 32.98 4.41
2352 2544 3.474600 GCTGTCATTACTGATCCTGCAT 58.525 45.455 0.00 0.00 32.98 3.96
2353 2545 3.250280 GCTGTCATTACTGATCCTGCATG 59.750 47.826 0.00 0.00 32.98 4.06
2368 2566 3.111405 CATGCCATGCCTCACATCT 57.889 52.632 0.00 0.00 36.64 2.90
2371 2569 1.527844 GCCATGCCTCACATCTCCC 60.528 63.158 0.00 0.00 36.64 4.30
2372 2570 1.992519 GCCATGCCTCACATCTCCCT 61.993 60.000 0.00 0.00 36.64 4.20
2374 2572 0.108207 CATGCCTCACATCTCCCTCC 59.892 60.000 0.00 0.00 36.64 4.30
2376 2574 1.383803 GCCTCACATCTCCCTCCCT 60.384 63.158 0.00 0.00 0.00 4.20
2378 2576 0.835941 CCTCACATCTCCCTCCCTTG 59.164 60.000 0.00 0.00 0.00 3.61
2380 2578 1.209019 CTCACATCTCCCTCCCTTGTG 59.791 57.143 0.00 0.00 39.16 3.33
2381 2579 0.987294 CACATCTCCCTCCCTTGTGT 59.013 55.000 0.00 0.00 34.43 3.72
2382 2580 0.987294 ACATCTCCCTCCCTTGTGTG 59.013 55.000 0.00 0.00 0.00 3.82
2384 2582 0.987294 ATCTCCCTCCCTTGTGTGTG 59.013 55.000 0.00 0.00 0.00 3.82
2385 2583 0.399949 TCTCCCTCCCTTGTGTGTGT 60.400 55.000 0.00 0.00 0.00 3.72
2386 2584 0.250467 CTCCCTCCCTTGTGTGTGTG 60.250 60.000 0.00 0.00 0.00 3.82
2387 2585 0.986019 TCCCTCCCTTGTGTGTGTGT 60.986 55.000 0.00 0.00 0.00 3.72
2388 2586 0.819259 CCCTCCCTTGTGTGTGTGTG 60.819 60.000 0.00 0.00 0.00 3.82
2389 2587 0.180171 CCTCCCTTGTGTGTGTGTGA 59.820 55.000 0.00 0.00 0.00 3.58
2390 2588 1.586422 CTCCCTTGTGTGTGTGTGAG 58.414 55.000 0.00 0.00 0.00 3.51
2391 2589 1.138859 CTCCCTTGTGTGTGTGTGAGA 59.861 52.381 0.00 0.00 0.00 3.27
2392 2590 1.138859 TCCCTTGTGTGTGTGTGAGAG 59.861 52.381 0.00 0.00 0.00 3.20
2406 2604 4.079844 TGTGTGAGAGAGAGAGAGATCCAT 60.080 45.833 0.00 0.00 0.00 3.41
2438 2636 3.815396 GGCGGCTACAAGGCTTGC 61.815 66.667 26.45 13.12 38.85 4.01
2439 2637 3.055719 GCGGCTACAAGGCTTGCA 61.056 61.111 26.45 13.76 38.85 4.08
2440 2638 2.409870 GCGGCTACAAGGCTTGCAT 61.410 57.895 26.45 11.23 38.85 3.96
2441 2639 1.937546 GCGGCTACAAGGCTTGCATT 61.938 55.000 26.45 10.48 38.85 3.56
2442 2640 1.378531 CGGCTACAAGGCTTGCATTA 58.621 50.000 26.45 11.08 38.85 1.90
2443 2641 1.331756 CGGCTACAAGGCTTGCATTAG 59.668 52.381 26.45 20.08 38.85 1.73
2444 2642 1.678101 GGCTACAAGGCTTGCATTAGG 59.322 52.381 26.45 11.24 37.85 2.69
2445 2643 2.369394 GCTACAAGGCTTGCATTAGGT 58.631 47.619 26.45 8.26 0.00 3.08
2446 2644 2.356069 GCTACAAGGCTTGCATTAGGTC 59.644 50.000 26.45 6.26 0.00 3.85
2447 2645 1.453155 ACAAGGCTTGCATTAGGTCG 58.547 50.000 26.45 0.00 0.00 4.79
2448 2646 1.271379 ACAAGGCTTGCATTAGGTCGT 60.271 47.619 26.45 0.28 0.00 4.34
2449 2647 1.131126 CAAGGCTTGCATTAGGTCGTG 59.869 52.381 15.25 0.00 0.00 4.35
2562 2769 0.516001 CAGCATGTGTGTGAGCTCAC 59.484 55.000 35.04 35.04 46.59 3.51
2633 2840 1.818674 GCAACTCCCAAATCGAACCAT 59.181 47.619 0.00 0.00 0.00 3.55
2638 2845 2.620115 CTCCCAAATCGAACCATGGATG 59.380 50.000 21.47 7.55 34.82 3.51
2639 2846 2.025416 TCCCAAATCGAACCATGGATGT 60.025 45.455 21.47 2.39 34.82 3.06
2649 2856 3.524095 ACCATGGATGTTGGTTCTTCA 57.476 42.857 21.47 0.00 45.19 3.02
2650 2857 4.051661 ACCATGGATGTTGGTTCTTCAT 57.948 40.909 21.47 0.00 45.19 2.57
2651 2858 4.019174 ACCATGGATGTTGGTTCTTCATC 58.981 43.478 21.47 0.00 45.19 2.92
2652 2859 3.065786 CCATGGATGTTGGTTCTTCATCG 59.934 47.826 5.56 0.00 38.86 3.84
2653 2860 3.694043 TGGATGTTGGTTCTTCATCGA 57.306 42.857 0.00 0.00 38.86 3.59
2654 2861 4.220693 TGGATGTTGGTTCTTCATCGAT 57.779 40.909 0.00 0.00 38.86 3.59
2655 2862 5.351948 TGGATGTTGGTTCTTCATCGATA 57.648 39.130 0.00 0.00 38.86 2.92
2656 2863 5.928976 TGGATGTTGGTTCTTCATCGATAT 58.071 37.500 0.00 0.00 38.86 1.63
2657 2864 5.991606 TGGATGTTGGTTCTTCATCGATATC 59.008 40.000 0.00 0.00 38.86 1.63
2658 2865 6.183361 TGGATGTTGGTTCTTCATCGATATCT 60.183 38.462 0.00 0.00 38.86 1.98
2659 2866 6.367422 GGATGTTGGTTCTTCATCGATATCTC 59.633 42.308 0.00 0.00 38.86 2.75
2660 2867 6.220726 TGTTGGTTCTTCATCGATATCTCA 57.779 37.500 0.00 0.00 0.00 3.27
2661 2868 6.639563 TGTTGGTTCTTCATCGATATCTCAA 58.360 36.000 0.00 0.00 0.00 3.02
2662 2869 6.758416 TGTTGGTTCTTCATCGATATCTCAAG 59.242 38.462 0.00 0.00 0.00 3.02
2663 2870 5.292765 TGGTTCTTCATCGATATCTCAAGC 58.707 41.667 0.00 0.00 0.00 4.01
2664 2871 5.163416 TGGTTCTTCATCGATATCTCAAGCA 60.163 40.000 0.00 1.08 0.00 3.91
2665 2872 5.176590 GGTTCTTCATCGATATCTCAAGCAC 59.823 44.000 0.00 0.00 0.00 4.40
2666 2873 4.540824 TCTTCATCGATATCTCAAGCACG 58.459 43.478 0.00 0.00 0.00 5.34
2667 2874 2.666026 TCATCGATATCTCAAGCACGC 58.334 47.619 0.00 0.00 0.00 5.34
2681 2888 2.237416 CACGCATGTGCTCTGTTCA 58.763 52.632 6.08 0.00 39.67 3.18
2693 2900 2.358898 GCTCTGTTCAACAGCTTGGAAA 59.641 45.455 13.15 0.00 45.54 3.13
2699 2906 1.134220 TCAACAGCTTGGAAACGACCT 60.134 47.619 0.00 0.00 0.00 3.85
2700 2907 1.002468 CAACAGCTTGGAAACGACCTG 60.002 52.381 0.00 0.00 0.00 4.00
2701 2908 1.166531 ACAGCTTGGAAACGACCTGC 61.167 55.000 0.00 0.00 0.00 4.85
2704 2911 1.503818 GCTTGGAAACGACCTGCGAA 61.504 55.000 0.00 0.00 44.57 4.70
2705 2912 1.156736 CTTGGAAACGACCTGCGAAT 58.843 50.000 0.00 0.00 44.57 3.34
2706 2913 2.343101 CTTGGAAACGACCTGCGAATA 58.657 47.619 0.00 0.00 44.57 1.75
2708 2915 1.004595 GGAAACGACCTGCGAATACC 58.995 55.000 0.00 0.00 44.57 2.73
2709 2916 1.673626 GGAAACGACCTGCGAATACCA 60.674 52.381 0.00 0.00 44.57 3.25
2711 2918 0.606604 AACGACCTGCGAATACCACT 59.393 50.000 0.00 0.00 44.57 4.00
2712 2919 0.108804 ACGACCTGCGAATACCACTG 60.109 55.000 0.00 0.00 44.57 3.66
2713 2920 1.421410 CGACCTGCGAATACCACTGC 61.421 60.000 0.00 0.00 44.57 4.40
2714 2921 0.391130 GACCTGCGAATACCACTGCA 60.391 55.000 0.00 0.00 35.75 4.41
2715 2922 0.253044 ACCTGCGAATACCACTGCAT 59.747 50.000 0.00 0.00 36.64 3.96
2717 2924 1.745087 CCTGCGAATACCACTGCATTT 59.255 47.619 0.00 0.00 36.64 2.32
2718 2925 2.942376 CCTGCGAATACCACTGCATTTA 59.058 45.455 0.00 0.00 36.64 1.40
2720 2927 4.319766 CCTGCGAATACCACTGCATTTATC 60.320 45.833 0.00 0.00 36.64 1.75
2721 2928 3.563808 TGCGAATACCACTGCATTTATCC 59.436 43.478 0.00 0.00 31.31 2.59
2722 2929 3.563808 GCGAATACCACTGCATTTATCCA 59.436 43.478 0.00 0.00 0.00 3.41
2723 2930 4.319766 GCGAATACCACTGCATTTATCCAG 60.320 45.833 0.00 0.00 35.26 3.86
2724 2931 5.056480 CGAATACCACTGCATTTATCCAGA 58.944 41.667 0.00 0.00 33.40 3.86
2725 2932 5.527214 CGAATACCACTGCATTTATCCAGAA 59.473 40.000 0.00 0.00 33.40 3.02
2727 2934 7.415095 CGAATACCACTGCATTTATCCAGAAAA 60.415 37.037 0.00 0.00 33.40 2.29
2728 2935 7.716799 ATACCACTGCATTTATCCAGAAAAA 57.283 32.000 0.00 0.00 33.40 1.94
2751 2958 7.552050 AAAAATTGTATCCACATTTCCAGGA 57.448 32.000 0.00 0.00 33.76 3.86
2752 2959 7.738437 AAAATTGTATCCACATTTCCAGGAT 57.262 32.000 0.00 0.00 44.09 3.24
2753 2960 7.738437 AAATTGTATCCACATTTCCAGGATT 57.262 32.000 0.00 0.00 42.03 3.01
2754 2961 6.720112 ATTGTATCCACATTTCCAGGATTG 57.280 37.500 0.00 0.00 42.03 2.67
2755 2962 5.191727 TGTATCCACATTTCCAGGATTGT 57.808 39.130 0.00 0.00 42.03 2.71
2756 2963 6.320434 TGTATCCACATTTCCAGGATTGTA 57.680 37.500 5.45 0.00 42.03 2.41
2763 2970 7.056635 CCACATTTCCAGGATTGTATAGAACT 58.943 38.462 5.45 0.00 0.00 3.01
2794 3011 3.046390 CTCCGCAGATCATAGTTCGTTC 58.954 50.000 0.00 0.00 0.00 3.95
2795 3012 2.128035 CCGCAGATCATAGTTCGTTCC 58.872 52.381 0.00 0.00 0.00 3.62
2803 3020 3.186909 TCATAGTTCGTTCCAATCTGCG 58.813 45.455 0.00 0.00 0.00 5.18
2808 3025 0.391130 TCGTTCCAATCTGCGGAAGG 60.391 55.000 0.00 5.06 43.15 3.46
2820 3037 0.800631 GCGGAAGGAAACCTTAACGG 59.199 55.000 20.16 9.37 44.82 4.44
2901 3118 3.755378 AGTTGGTATTCTGAGCAAAGCTG 59.245 43.478 0.00 0.00 39.88 4.24
2902 3119 3.423539 TGGTATTCTGAGCAAAGCTGT 57.576 42.857 0.00 0.00 39.88 4.40
2934 3154 3.062234 CGCTAGCAACTAGGCAGTAAAAC 59.938 47.826 16.45 0.00 34.88 2.43
2992 3215 8.815565 TCTTGATGCTTACCCAACATTTATAA 57.184 30.769 0.00 0.00 0.00 0.98
3152 3379 3.362706 AGCTGACTAATTAGGACGACCA 58.637 45.455 16.73 4.24 38.94 4.02
3170 3397 1.472480 CCAAGTTGAGTAATTGGGCCG 59.528 52.381 3.87 0.00 39.87 6.13
3173 3400 1.092348 GTTGAGTAATTGGGCCGGTC 58.908 55.000 1.90 0.00 0.00 4.79
3224 3454 2.288273 GGATGGATGAGTACGTACTGCC 60.288 54.545 31.91 26.28 36.50 4.85
3226 3456 1.475280 TGGATGAGTACGTACTGCCAC 59.525 52.381 31.91 17.70 36.50 5.01
3285 3515 7.570324 GCAATGTCACTTCAAGACTAGAGAAAC 60.570 40.741 0.00 0.00 36.94 2.78
3350 3623 3.244284 TGGCCTACTTGAAGAAAGCGTAA 60.244 43.478 3.32 0.00 39.76 3.18
3608 4145 7.655521 AATGTGTGTGTATTAGGAGTAGCTA 57.344 36.000 0.00 0.00 0.00 3.32
3662 4199 7.115553 GCGTAAAAATAGTAGAAATCCACGTC 58.884 38.462 0.00 0.00 0.00 4.34
3738 4276 2.886523 GCTATCCATATGCCAACTTGCA 59.113 45.455 0.00 0.00 46.94 4.08
3856 4422 9.398170 CAGTTTTCAGTGTGGTAATTATTTGAG 57.602 33.333 0.00 0.00 0.00 3.02
3886 4464 2.410053 GCAGAAGACTTGCAGAGTTACG 59.590 50.000 0.00 0.00 39.19 3.18
3895 4473 1.009389 GCAGAGTTACGCTGTTCGCT 61.009 55.000 16.70 0.00 43.23 4.93
3896 4474 1.419374 CAGAGTTACGCTGTTCGCTT 58.581 50.000 7.93 0.00 43.23 4.68
3897 4475 1.125021 CAGAGTTACGCTGTTCGCTTG 59.875 52.381 7.93 0.00 43.23 4.01
3898 4476 1.137513 GAGTTACGCTGTTCGCTTGT 58.862 50.000 0.00 0.00 43.23 3.16
3900 4478 0.110823 GTTACGCTGTTCGCTTGTGG 60.111 55.000 0.00 0.00 43.23 4.17
3901 4479 0.249531 TTACGCTGTTCGCTTGTGGA 60.250 50.000 0.00 0.00 43.23 4.02
3902 4480 0.942410 TACGCTGTTCGCTTGTGGAC 60.942 55.000 0.00 0.00 43.23 4.02
3907 4528 1.261619 CTGTTCGCTTGTGGACTGAAC 59.738 52.381 0.00 0.00 39.40 3.18
3926 4547 2.715046 ACGTTGATCTTGTCCATGCAT 58.285 42.857 0.00 0.00 0.00 3.96
3974 4595 1.227002 GTCCATCTTCTCGACGGCC 60.227 63.158 0.00 0.00 0.00 6.13
4013 4634 2.675772 GTCGACGGGGAGGACTGT 60.676 66.667 0.00 0.00 0.00 3.55
4061 4682 2.983930 GACGCTGTCGAGCTGGAGT 61.984 63.158 0.00 0.00 43.77 3.85
4208 4829 2.579787 GAGACCACCATCGCGTCG 60.580 66.667 5.77 0.00 0.00 5.12
4337 4958 2.362503 ACGCGGATGGAGGAGTCA 60.363 61.111 12.47 0.00 0.00 3.41
4520 5162 6.817641 TCCAGTAGTGTTTTGTTTAGTTTCGA 59.182 34.615 0.00 0.00 0.00 3.71
4522 5164 6.903479 CAGTAGTGTTTTGTTTAGTTTCGACC 59.097 38.462 0.00 0.00 0.00 4.79
4577 5219 0.724453 AAAATGCAAGCGCGTGTACG 60.724 50.000 23.94 0.00 42.97 3.67
4638 5280 8.184848 AGAAAGAAAAACTCACAGTTTCTAAGC 58.815 33.333 2.19 0.00 46.78 3.09
4640 5282 7.573968 AGAAAAACTCACAGTTTCTAAGCAT 57.426 32.000 2.19 0.00 46.78 3.79
4644 5286 5.220710 ACTCACAGTTTCTAAGCATCTGT 57.779 39.130 0.00 0.00 39.48 3.41
4645 5287 6.017605 AAACTCACAGTTTCTAAGCATCTGTG 60.018 38.462 14.75 14.75 44.47 3.66
4649 5291 4.993584 ACAGTTTCTAAGCATCTGTGAGTG 59.006 41.667 0.00 0.00 37.85 3.51
4650 5292 5.221521 ACAGTTTCTAAGCATCTGTGAGTGA 60.222 40.000 0.00 0.00 37.85 3.41
4651 5293 5.119898 CAGTTTCTAAGCATCTGTGAGTGAC 59.880 44.000 0.00 0.00 0.00 3.67
4652 5294 3.876274 TCTAAGCATCTGTGAGTGACC 57.124 47.619 0.00 0.00 0.00 4.02
4653 5295 2.164422 TCTAAGCATCTGTGAGTGACCG 59.836 50.000 0.00 0.00 0.00 4.79
4654 5296 0.681733 AAGCATCTGTGAGTGACCGT 59.318 50.000 0.00 0.00 0.00 4.83
4655 5297 0.037882 AGCATCTGTGAGTGACCGTG 60.038 55.000 0.00 0.00 0.00 4.94
4656 5298 0.038251 GCATCTGTGAGTGACCGTGA 60.038 55.000 0.00 0.00 0.00 4.35
4657 5299 1.988063 CATCTGTGAGTGACCGTGAG 58.012 55.000 0.00 0.00 0.00 3.51
4658 5300 1.541588 CATCTGTGAGTGACCGTGAGA 59.458 52.381 0.00 0.00 0.00 3.27
4659 5301 1.239347 TCTGTGAGTGACCGTGAGAG 58.761 55.000 0.00 0.00 0.00 3.20
4660 5302 0.955178 CTGTGAGTGACCGTGAGAGT 59.045 55.000 0.00 0.00 0.00 3.24
4661 5303 0.668535 TGTGAGTGACCGTGAGAGTG 59.331 55.000 0.00 0.00 0.00 3.51
4662 5304 0.039074 GTGAGTGACCGTGAGAGTGG 60.039 60.000 0.00 0.00 0.00 4.00
4663 5305 1.080434 GAGTGACCGTGAGAGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
4664 5306 1.528292 GAGTGACCGTGAGAGTGGCT 61.528 60.000 0.00 0.00 0.00 4.75
4665 5307 0.251209 AGTGACCGTGAGAGTGGCTA 60.251 55.000 0.00 0.00 0.00 3.93
4666 5308 0.109226 GTGACCGTGAGAGTGGCTAC 60.109 60.000 0.00 0.00 0.00 3.58
4667 5309 1.136984 GACCGTGAGAGTGGCTACG 59.863 63.158 0.00 0.00 36.39 3.51
4668 5310 1.584380 GACCGTGAGAGTGGCTACGT 61.584 60.000 0.00 0.00 34.96 3.57
4669 5311 1.154016 CCGTGAGAGTGGCTACGTG 60.154 63.158 0.00 0.00 34.96 4.49
4670 5312 1.579932 CGTGAGAGTGGCTACGTGT 59.420 57.895 0.00 0.00 0.00 4.49
4671 5313 0.800631 CGTGAGAGTGGCTACGTGTA 59.199 55.000 0.00 0.00 0.00 2.90
4672 5314 1.198408 CGTGAGAGTGGCTACGTGTAA 59.802 52.381 0.00 0.00 0.00 2.41
4673 5315 2.351060 CGTGAGAGTGGCTACGTGTAAA 60.351 50.000 0.00 0.00 0.00 2.01
4834 5476 9.628500 AGTTTTGTTTGGTTCTCTTATTCTACT 57.372 29.630 0.00 0.00 0.00 2.57
4850 5492 8.815141 TTATTCTACTTTGTTAACGTACTGCA 57.185 30.769 0.26 0.00 0.00 4.41
4865 5507 1.699634 ACTGCAGCCTTCTTGGAAGTA 59.300 47.619 15.27 0.00 38.35 2.24
4866 5508 2.079925 CTGCAGCCTTCTTGGAAGTAC 58.920 52.381 0.00 0.00 38.35 2.73
4898 5544 1.532437 TGAGCTGCATTTGTCTGAACG 59.468 47.619 1.02 0.00 0.00 3.95
4907 5557 5.524281 TGCATTTGTCTGAACGTTTGTACTA 59.476 36.000 0.46 0.00 0.00 1.82
4908 5558 5.844396 GCATTTGTCTGAACGTTTGTACTAC 59.156 40.000 0.46 0.00 0.00 2.73
4909 5559 6.292703 GCATTTGTCTGAACGTTTGTACTACT 60.293 38.462 0.46 0.00 0.00 2.57
4910 5560 7.095940 GCATTTGTCTGAACGTTTGTACTACTA 60.096 37.037 0.46 0.00 0.00 1.82
4911 5561 7.684062 TTTGTCTGAACGTTTGTACTACTAC 57.316 36.000 0.46 0.00 0.00 2.73
4912 5562 6.624352 TGTCTGAACGTTTGTACTACTACT 57.376 37.500 0.46 0.00 0.00 2.57
4913 5563 6.432936 TGTCTGAACGTTTGTACTACTACTG 58.567 40.000 0.46 0.00 0.00 2.74
4914 5564 6.260714 TGTCTGAACGTTTGTACTACTACTGA 59.739 38.462 0.46 0.00 0.00 3.41
4915 5565 6.576684 GTCTGAACGTTTGTACTACTACTGAC 59.423 42.308 0.46 1.71 0.00 3.51
4916 5566 5.762045 TGAACGTTTGTACTACTACTGACC 58.238 41.667 0.46 0.00 0.00 4.02
4917 5567 5.532406 TGAACGTTTGTACTACTACTGACCT 59.468 40.000 0.46 0.00 0.00 3.85
4918 5568 6.710295 TGAACGTTTGTACTACTACTGACCTA 59.290 38.462 0.46 0.00 0.00 3.08
4919 5569 6.487689 ACGTTTGTACTACTACTGACCTAC 57.512 41.667 0.00 0.00 0.00 3.18
4920 5570 5.120830 ACGTTTGTACTACTACTGACCTACG 59.879 44.000 0.00 0.00 0.00 3.51
4921 5571 5.327891 GTTTGTACTACTACTGACCTACGC 58.672 45.833 0.00 0.00 0.00 4.42
4922 5572 4.478206 TGTACTACTACTGACCTACGCT 57.522 45.455 0.00 0.00 0.00 5.07
4923 5573 4.836825 TGTACTACTACTGACCTACGCTT 58.163 43.478 0.00 0.00 0.00 4.68
4924 5574 4.633126 TGTACTACTACTGACCTACGCTTG 59.367 45.833 0.00 0.00 0.00 4.01
4925 5575 3.015327 ACTACTACTGACCTACGCTTGG 58.985 50.000 0.00 0.00 0.00 3.61
4926 5576 1.920610 ACTACTGACCTACGCTTGGT 58.079 50.000 0.00 0.00 41.07 3.67
4927 5577 1.544691 ACTACTGACCTACGCTTGGTG 59.455 52.381 0.00 0.00 38.03 4.17
4928 5578 1.544691 CTACTGACCTACGCTTGGTGT 59.455 52.381 0.00 0.00 38.03 4.16
4929 5579 0.317479 ACTGACCTACGCTTGGTGTC 59.683 55.000 0.00 0.00 38.03 3.67
4930 5580 0.317160 CTGACCTACGCTTGGTGTCA 59.683 55.000 0.00 0.00 38.03 3.58
4931 5581 0.973632 TGACCTACGCTTGGTGTCAT 59.026 50.000 0.00 0.00 38.03 3.06
4932 5582 1.346395 TGACCTACGCTTGGTGTCATT 59.654 47.619 0.00 0.00 38.03 2.57
4933 5583 2.224426 TGACCTACGCTTGGTGTCATTT 60.224 45.455 0.00 0.00 38.03 2.32
4934 5584 2.812011 GACCTACGCTTGGTGTCATTTT 59.188 45.455 0.00 0.00 38.03 1.82
4935 5585 2.552315 ACCTACGCTTGGTGTCATTTTG 59.448 45.455 0.00 0.00 36.30 2.44
4936 5586 2.095263 CCTACGCTTGGTGTCATTTTGG 60.095 50.000 0.00 0.00 0.00 3.28
4937 5587 1.398692 ACGCTTGGTGTCATTTTGGT 58.601 45.000 0.00 0.00 0.00 3.67
4938 5588 2.577700 ACGCTTGGTGTCATTTTGGTA 58.422 42.857 0.00 0.00 0.00 3.25
4939 5589 2.552315 ACGCTTGGTGTCATTTTGGTAG 59.448 45.455 0.00 0.00 0.00 3.18
4940 5590 2.668279 CGCTTGGTGTCATTTTGGTAGC 60.668 50.000 0.00 0.00 0.00 3.58
4941 5591 2.668279 GCTTGGTGTCATTTTGGTAGCG 60.668 50.000 0.00 0.00 0.00 4.26
4942 5592 2.264005 TGGTGTCATTTTGGTAGCGT 57.736 45.000 0.00 0.00 0.00 5.07
4943 5593 2.577700 TGGTGTCATTTTGGTAGCGTT 58.422 42.857 0.00 0.00 0.00 4.84
4944 5594 2.952978 TGGTGTCATTTTGGTAGCGTTT 59.047 40.909 0.00 0.00 0.00 3.60
4945 5595 3.381908 TGGTGTCATTTTGGTAGCGTTTT 59.618 39.130 0.00 0.00 0.00 2.43
4946 5596 4.142138 TGGTGTCATTTTGGTAGCGTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
4947 5597 5.067413 TGGTGTCATTTTGGTAGCGTTTTTA 59.933 36.000 0.00 0.00 0.00 1.52
4948 5598 5.627780 GGTGTCATTTTGGTAGCGTTTTTAG 59.372 40.000 0.00 0.00 0.00 1.85
4949 5599 6.203647 GTGTCATTTTGGTAGCGTTTTTAGT 58.796 36.000 0.00 0.00 0.00 2.24
4950 5600 6.358822 GTGTCATTTTGGTAGCGTTTTTAGTC 59.641 38.462 0.00 0.00 0.00 2.59
4951 5601 5.854866 GTCATTTTGGTAGCGTTTTTAGTCC 59.145 40.000 0.00 0.00 0.00 3.85
4952 5602 5.766174 TCATTTTGGTAGCGTTTTTAGTCCT 59.234 36.000 0.00 0.00 0.00 3.85
4953 5603 6.263617 TCATTTTGGTAGCGTTTTTAGTCCTT 59.736 34.615 0.00 0.00 0.00 3.36
4954 5604 6.453926 TTTTGGTAGCGTTTTTAGTCCTTT 57.546 33.333 0.00 0.00 0.00 3.11
4955 5605 5.678132 TTGGTAGCGTTTTTAGTCCTTTC 57.322 39.130 0.00 0.00 0.00 2.62
4956 5606 4.964593 TGGTAGCGTTTTTAGTCCTTTCT 58.035 39.130 0.00 0.00 0.00 2.52
4957 5607 5.370679 TGGTAGCGTTTTTAGTCCTTTCTT 58.629 37.500 0.00 0.00 0.00 2.52
4958 5608 5.824097 TGGTAGCGTTTTTAGTCCTTTCTTT 59.176 36.000 0.00 0.00 0.00 2.52
4959 5609 6.319405 TGGTAGCGTTTTTAGTCCTTTCTTTT 59.681 34.615 0.00 0.00 0.00 2.27
4960 5610 7.498570 TGGTAGCGTTTTTAGTCCTTTCTTTTA 59.501 33.333 0.00 0.00 0.00 1.52
4961 5611 8.344831 GGTAGCGTTTTTAGTCCTTTCTTTTAA 58.655 33.333 0.00 0.00 0.00 1.52
4962 5612 9.378597 GTAGCGTTTTTAGTCCTTTCTTTTAAG 57.621 33.333 0.00 0.00 0.00 1.85
4963 5613 6.916387 AGCGTTTTTAGTCCTTTCTTTTAAGC 59.084 34.615 0.00 0.00 0.00 3.09
4964 5614 6.916387 GCGTTTTTAGTCCTTTCTTTTAAGCT 59.084 34.615 0.00 0.00 0.00 3.74
4965 5615 7.096599 GCGTTTTTAGTCCTTTCTTTTAAGCTG 60.097 37.037 0.00 0.00 0.00 4.24
4966 5616 8.126700 CGTTTTTAGTCCTTTCTTTTAAGCTGA 58.873 33.333 0.00 0.00 0.00 4.26
4967 5617 9.797556 GTTTTTAGTCCTTTCTTTTAAGCTGAA 57.202 29.630 0.00 0.00 0.00 3.02
4968 5618 9.797556 TTTTTAGTCCTTTCTTTTAAGCTGAAC 57.202 29.630 0.00 0.00 0.00 3.18
4969 5619 8.747538 TTTAGTCCTTTCTTTTAAGCTGAACT 57.252 30.769 0.00 0.00 0.00 3.01
4970 5620 6.869315 AGTCCTTTCTTTTAAGCTGAACTC 57.131 37.500 0.00 0.00 0.00 3.01
4971 5621 5.467063 AGTCCTTTCTTTTAAGCTGAACTCG 59.533 40.000 0.00 0.00 0.00 4.18
4972 5622 4.755123 TCCTTTCTTTTAAGCTGAACTCGG 59.245 41.667 0.00 0.00 0.00 4.63
4973 5623 4.515567 CCTTTCTTTTAAGCTGAACTCGGT 59.484 41.667 0.00 0.00 0.00 4.69
4974 5624 5.008712 CCTTTCTTTTAAGCTGAACTCGGTT 59.991 40.000 0.00 0.00 0.00 4.44
4975 5625 6.204108 CCTTTCTTTTAAGCTGAACTCGGTTA 59.796 38.462 0.00 0.00 0.00 2.85
4976 5626 7.094762 CCTTTCTTTTAAGCTGAACTCGGTTAT 60.095 37.037 0.00 0.00 0.00 1.89
4977 5627 6.721571 TCTTTTAAGCTGAACTCGGTTATG 57.278 37.500 0.00 0.00 0.00 1.90
4978 5628 6.460781 TCTTTTAAGCTGAACTCGGTTATGA 58.539 36.000 0.00 0.00 0.00 2.15
4979 5629 6.932400 TCTTTTAAGCTGAACTCGGTTATGAA 59.068 34.615 0.00 0.00 0.00 2.57
4980 5630 6.476243 TTTAAGCTGAACTCGGTTATGAAC 57.524 37.500 0.00 0.00 0.00 3.18
4981 5631 3.963428 AGCTGAACTCGGTTATGAACT 57.037 42.857 0.00 0.00 0.00 3.01
4982 5632 4.273148 AGCTGAACTCGGTTATGAACTT 57.727 40.909 0.00 0.00 0.00 2.66
4983 5633 4.642429 AGCTGAACTCGGTTATGAACTTT 58.358 39.130 0.00 0.00 0.00 2.66
4984 5634 5.063880 AGCTGAACTCGGTTATGAACTTTT 58.936 37.500 0.00 0.00 0.00 2.27
4985 5635 5.049405 AGCTGAACTCGGTTATGAACTTTTG 60.049 40.000 0.00 0.00 0.00 2.44
4986 5636 5.682943 TGAACTCGGTTATGAACTTTTGG 57.317 39.130 0.00 0.00 0.00 3.28
4987 5637 5.127491 TGAACTCGGTTATGAACTTTTGGT 58.873 37.500 0.00 0.00 0.00 3.67
4988 5638 5.008217 TGAACTCGGTTATGAACTTTTGGTG 59.992 40.000 0.00 0.00 0.00 4.17
4989 5639 3.818773 ACTCGGTTATGAACTTTTGGTGG 59.181 43.478 0.00 0.00 0.00 4.61
4990 5640 3.150767 TCGGTTATGAACTTTTGGTGGG 58.849 45.455 0.00 0.00 0.00 4.61
4991 5641 2.230266 CGGTTATGAACTTTTGGTGGGG 59.770 50.000 0.00 0.00 0.00 4.96
4992 5642 3.236047 GGTTATGAACTTTTGGTGGGGT 58.764 45.455 0.00 0.00 0.00 4.95
4993 5643 3.644265 GGTTATGAACTTTTGGTGGGGTT 59.356 43.478 0.00 0.00 0.00 4.11
4994 5644 4.262292 GGTTATGAACTTTTGGTGGGGTTC 60.262 45.833 0.00 0.00 38.64 3.62
4995 5645 2.534042 TGAACTTTTGGTGGGGTTCA 57.466 45.000 0.00 0.00 43.46 3.18
4996 5646 2.383855 TGAACTTTTGGTGGGGTTCAG 58.616 47.619 0.00 0.00 41.68 3.02
4997 5647 2.291930 TGAACTTTTGGTGGGGTTCAGT 60.292 45.455 0.00 0.00 41.68 3.41
4998 5648 3.053544 TGAACTTTTGGTGGGGTTCAGTA 60.054 43.478 0.00 0.00 41.68 2.74
4999 5649 3.673543 ACTTTTGGTGGGGTTCAGTAA 57.326 42.857 0.00 0.00 0.00 2.24
5000 5650 4.193240 ACTTTTGGTGGGGTTCAGTAAT 57.807 40.909 0.00 0.00 0.00 1.89
5001 5651 3.895041 ACTTTTGGTGGGGTTCAGTAATG 59.105 43.478 0.00 0.00 0.00 1.90
5002 5652 3.885976 TTTGGTGGGGTTCAGTAATGA 57.114 42.857 0.00 0.00 0.00 2.57
5003 5653 3.885976 TTGGTGGGGTTCAGTAATGAA 57.114 42.857 0.56 0.56 0.00 2.57
5004 5654 3.885976 TGGTGGGGTTCAGTAATGAAA 57.114 42.857 7.26 0.00 0.00 2.69
5005 5655 4.186077 TGGTGGGGTTCAGTAATGAAAA 57.814 40.909 7.26 0.00 0.00 2.29
5006 5656 4.746466 TGGTGGGGTTCAGTAATGAAAAT 58.254 39.130 7.26 0.00 0.00 1.82
5007 5657 4.770010 TGGTGGGGTTCAGTAATGAAAATC 59.230 41.667 7.26 0.87 0.00 2.17
5008 5658 4.142469 GGTGGGGTTCAGTAATGAAAATCG 60.142 45.833 7.26 0.00 0.00 3.34
5009 5659 4.013728 TGGGGTTCAGTAATGAAAATCGG 58.986 43.478 7.26 0.00 0.00 4.18
5010 5660 3.380320 GGGGTTCAGTAATGAAAATCGGG 59.620 47.826 7.26 0.00 0.00 5.14
5011 5661 3.181490 GGGTTCAGTAATGAAAATCGGGC 60.181 47.826 7.26 0.00 0.00 6.13
5012 5662 3.442273 GGTTCAGTAATGAAAATCGGGCA 59.558 43.478 7.26 0.00 0.00 5.36
5013 5663 4.082463 GGTTCAGTAATGAAAATCGGGCAA 60.082 41.667 7.26 0.00 0.00 4.52
5014 5664 4.963276 TCAGTAATGAAAATCGGGCAAG 57.037 40.909 0.00 0.00 0.00 4.01
5015 5665 3.128589 TCAGTAATGAAAATCGGGCAAGC 59.871 43.478 0.00 0.00 0.00 4.01
5016 5666 2.427095 AGTAATGAAAATCGGGCAAGCC 59.573 45.455 1.52 1.52 0.00 4.35
5030 5680 4.535526 GGCAAGCCCTTCTTTGATAAAA 57.464 40.909 0.00 0.00 31.27 1.52
5031 5681 4.893608 GGCAAGCCCTTCTTTGATAAAAA 58.106 39.130 0.00 0.00 31.27 1.94
5062 5712 2.434331 CTTGGTTCCTTCCGGCCA 59.566 61.111 2.24 0.00 0.00 5.36
5068 5718 1.921346 TTCCTTCCGGCCAGCCTTA 60.921 57.895 2.24 0.00 0.00 2.69
5069 5719 2.124695 CCTTCCGGCCAGCCTTAC 60.125 66.667 2.24 0.00 0.00 2.34
5077 5729 0.107643 GGCCAGCCTTACTCTGATCC 59.892 60.000 0.00 0.00 33.54 3.36
5088 5740 1.202510 ACTCTGATCCGCATGAGAAGC 60.203 52.381 0.00 0.00 0.00 3.86
5098 5750 2.538333 CGCATGAGAAGCTGTGCAATAC 60.538 50.000 0.00 0.00 37.44 1.89
5104 5756 7.571026 CATGAGAAGCTGTGCAATACTATTAC 58.429 38.462 0.00 0.00 0.00 1.89
5109 5761 6.668541 AGCTGTGCAATACTATTACTGTTG 57.331 37.500 0.00 0.00 0.00 3.33
5115 5767 7.622893 TGCAATACTATTACTGTTGCATCAA 57.377 32.000 6.95 0.00 46.98 2.57
5117 5769 6.628856 GCAATACTATTACTGTTGCATCAACG 59.371 38.462 0.00 3.50 46.13 4.10
5145 5797 0.657840 GGCGAGTTCCAATGGAATCG 59.342 55.000 26.97 26.97 44.04 3.34
5146 5798 1.651987 GCGAGTTCCAATGGAATCGA 58.348 50.000 31.36 8.70 44.04 3.59
5155 5807 2.346803 CAATGGAATCGACAGAACGGT 58.653 47.619 0.00 0.00 0.00 4.83
5185 5837 4.242475 CTGAGCTGTTAACAACGATGGTA 58.758 43.478 10.03 0.00 0.00 3.25
5191 5843 3.071312 TGTTAACAACGATGGTAGGTGGT 59.929 43.478 5.64 0.00 28.47 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.377725 ACGTACCCGGAGTGATCGT 60.378 57.895 0.73 9.53 38.78 3.73
1 2 1.063649 CACGTACCCGGAGTGATCG 59.936 63.158 0.73 8.93 38.06 3.69
6 7 1.980772 CCTTCCACGTACCCGGAGT 60.981 63.158 0.73 0.99 38.78 3.85
11 12 1.134491 CAAGGATCCTTCCACGTACCC 60.134 57.143 24.67 0.00 45.30 3.69
12 13 1.134491 CCAAGGATCCTTCCACGTACC 60.134 57.143 24.67 0.00 45.30 3.34
15 16 1.279271 CTTCCAAGGATCCTTCCACGT 59.721 52.381 24.67 0.00 45.30 4.49
33 34 1.837439 TGCCCGACTCATTCCATACTT 59.163 47.619 0.00 0.00 0.00 2.24
35 36 1.139058 AGTGCCCGACTCATTCCATAC 59.861 52.381 0.00 0.00 0.00 2.39
37 38 2.300996 AGTGCCCGACTCATTCCAT 58.699 52.632 0.00 0.00 0.00 3.41
64 65 2.788176 CGCACACGACATGGCGTAG 61.788 63.158 29.10 22.85 43.59 3.51
99 100 1.533033 TTCCGTCCAGCTGGAGTGA 60.533 57.895 35.92 28.96 46.49 3.41
102 103 2.125912 CGTTCCGTCCAGCTGGAG 60.126 66.667 35.92 26.28 46.49 3.86
135 136 3.119709 CTCAGGTCGGCGCTCTCTC 62.120 68.421 7.64 0.00 0.00 3.20
162 163 2.031560 CGAAGATCTCTCACCGTCTCTG 59.968 54.545 0.00 0.00 0.00 3.35
163 164 2.285083 CGAAGATCTCTCACCGTCTCT 58.715 52.381 0.00 0.00 0.00 3.10
182 183 0.734253 CAGTCCGAGACTTGAAGCCG 60.734 60.000 4.08 0.00 41.37 5.52
344 346 1.017387 GACTCATTCATTCCGGTGGC 58.983 55.000 0.00 0.00 0.00 5.01
349 351 0.652592 GTGGCGACTCATTCATTCCG 59.347 55.000 0.00 0.00 0.00 4.30
365 368 4.025401 GCTTGGCGTGGTTCGTGG 62.025 66.667 0.00 0.00 42.13 4.94
386 389 3.865071 GGGGGTTTCCGCTTGTTT 58.135 55.556 3.09 0.00 42.16 2.83
814 864 5.522456 TCGTTCGGTTATTATAATGCGAGT 58.478 37.500 8.28 0.00 0.00 4.18
816 866 4.919168 CCTCGTTCGGTTATTATAATGCGA 59.081 41.667 8.28 5.90 0.00 5.10
833 883 4.927782 TGCTTGTGCGGCCTCGTT 62.928 61.111 0.00 0.00 43.34 3.85
844 894 4.399303 AGAGTTTGTTGCTAACTTGCTTGT 59.601 37.500 0.00 0.00 36.04 3.16
852 902 2.663063 GCTGCGAGAGTTTGTTGCTAAC 60.663 50.000 0.00 0.00 0.00 2.34
853 903 1.531149 GCTGCGAGAGTTTGTTGCTAA 59.469 47.619 0.00 0.00 0.00 3.09
854 904 1.148310 GCTGCGAGAGTTTGTTGCTA 58.852 50.000 0.00 0.00 0.00 3.49
855 905 0.815213 TGCTGCGAGAGTTTGTTGCT 60.815 50.000 0.00 0.00 0.00 3.91
856 906 0.385223 CTGCTGCGAGAGTTTGTTGC 60.385 55.000 0.00 0.00 0.00 4.17
857 907 0.385223 GCTGCTGCGAGAGTTTGTTG 60.385 55.000 0.00 0.00 0.00 3.33
858 908 0.815213 TGCTGCTGCGAGAGTTTGTT 60.815 50.000 11.21 0.00 43.34 2.83
859 909 1.226686 CTGCTGCTGCGAGAGTTTGT 61.227 55.000 11.21 0.00 43.34 2.83
967 1030 1.300697 GTCACGCTCGGTTCCAACT 60.301 57.895 0.00 0.00 0.00 3.16
968 1031 1.300697 AGTCACGCTCGGTTCCAAC 60.301 57.895 0.00 0.00 0.00 3.77
970 1033 2.338620 CAGTCACGCTCGGTTCCA 59.661 61.111 0.00 0.00 0.00 3.53
972 1035 3.470567 CGCAGTCACGCTCGGTTC 61.471 66.667 0.00 0.00 0.00 3.62
973 1036 4.280494 ACGCAGTCACGCTCGGTT 62.280 61.111 0.00 0.00 29.74 4.44
976 1039 3.168604 CTCACGCAGTCACGCTCG 61.169 66.667 0.00 0.00 41.61 5.03
977 1040 2.807045 CCTCACGCAGTCACGCTC 60.807 66.667 0.00 0.00 41.61 5.03
978 1041 4.363990 CCCTCACGCAGTCACGCT 62.364 66.667 0.00 0.00 41.61 5.07
979 1042 4.357947 TCCCTCACGCAGTCACGC 62.358 66.667 0.00 0.00 41.61 5.34
980 1043 2.126307 CTCCCTCACGCAGTCACG 60.126 66.667 0.00 0.00 41.61 4.35
981 1044 1.214062 CTCTCCCTCACGCAGTCAC 59.786 63.158 0.00 0.00 41.61 3.67
982 1045 0.323816 ATCTCTCCCTCACGCAGTCA 60.324 55.000 0.00 0.00 41.61 3.41
985 1048 0.385029 CTCATCTCTCCCTCACGCAG 59.615 60.000 0.00 0.00 0.00 5.18
986 1049 1.039785 CCTCATCTCTCCCTCACGCA 61.040 60.000 0.00 0.00 0.00 5.24
988 1051 1.743321 GCCCTCATCTCTCCCTCACG 61.743 65.000 0.00 0.00 0.00 4.35
989 1052 1.743321 CGCCCTCATCTCTCCCTCAC 61.743 65.000 0.00 0.00 0.00 3.51
990 1053 1.456518 CGCCCTCATCTCTCCCTCA 60.457 63.158 0.00 0.00 0.00 3.86
991 1054 1.152652 TCGCCCTCATCTCTCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
992 1055 1.152567 CTCGCCCTCATCTCTCCCT 60.153 63.158 0.00 0.00 0.00 4.20
993 1056 2.206536 CCTCGCCCTCATCTCTCCC 61.207 68.421 0.00 0.00 0.00 4.30
1164 1227 1.587043 CGAGGACGGAGAGAAGCACA 61.587 60.000 0.00 0.00 35.72 4.57
1170 1233 2.438614 CAGGCGAGGACGGAGAGA 60.439 66.667 0.00 0.00 40.15 3.10
1262 1335 2.903547 GCAGAAACCAAAGGCGCGA 61.904 57.895 12.10 0.00 0.00 5.87
1294 1376 0.454957 GCAACCAACAGCAGCATACG 60.455 55.000 0.00 0.00 0.00 3.06
1386 1471 1.695893 CGTACATGCTCTTGGCCGTG 61.696 60.000 0.00 0.00 40.92 4.94
1663 1754 0.179020 TGAATGGATGGATGGCGACC 60.179 55.000 0.00 0.00 0.00 4.79
1695 1811 1.144496 GTGGAATTAGCGGCGGGTA 59.856 57.895 9.78 0.00 0.00 3.69
1705 1821 1.066430 GGAGCGTGGACTGTGGAATTA 60.066 52.381 0.00 0.00 0.00 1.40
1707 1823 1.296715 GGAGCGTGGACTGTGGAAT 59.703 57.895 0.00 0.00 0.00 3.01
1708 1824 2.741092 GGAGCGTGGACTGTGGAA 59.259 61.111 0.00 0.00 0.00 3.53
1765 1894 1.715585 GTCACGATGGTTGATGCGG 59.284 57.895 0.00 0.00 0.00 5.69
1811 1945 3.253432 GGAAAGAAAAGGTACTGTGCTGG 59.747 47.826 0.00 0.00 40.86 4.85
1813 1947 3.487372 GGGAAAGAAAAGGTACTGTGCT 58.513 45.455 0.00 0.00 40.86 4.40
1814 1948 2.557056 GGGGAAAGAAAAGGTACTGTGC 59.443 50.000 0.00 0.00 40.86 4.57
1815 1949 4.100279 AGGGGAAAGAAAAGGTACTGTG 57.900 45.455 0.00 0.00 40.86 3.66
1840 1974 1.901159 TGGTAACTAAAGCGGGTGCTA 59.099 47.619 0.00 0.00 46.05 3.49
1846 1980 1.931172 CGGTGATGGTAACTAAAGCGG 59.069 52.381 0.00 0.00 37.61 5.52
1972 2121 2.232399 GCAACGGGGAAAGAAAAGGTA 58.768 47.619 0.00 0.00 0.00 3.08
2019 2169 1.057636 CACAGATGCAAAGCAAAGCG 58.942 50.000 0.00 0.00 43.62 4.68
2128 2315 6.351711 TGATTACATGGTGGATCTTTCTCAG 58.648 40.000 0.00 0.00 0.00 3.35
2216 2403 4.333926 CGTTGGGGTAGTAGTGAGTAGTAC 59.666 50.000 4.11 4.11 36.96 2.73
2224 2411 2.797087 CGCATACGTTGGGGTAGTAGTG 60.797 54.545 0.00 0.00 34.74 2.74
2225 2412 1.406539 CGCATACGTTGGGGTAGTAGT 59.593 52.381 0.00 0.00 34.74 2.73
2226 2413 1.866880 GCGCATACGTTGGGGTAGTAG 60.867 57.143 0.30 0.00 42.83 2.57
2227 2414 0.102844 GCGCATACGTTGGGGTAGTA 59.897 55.000 0.30 0.00 42.83 1.82
2325 2517 4.063689 GGATCAGTAATGACAGCCATGAG 58.936 47.826 0.00 0.00 35.24 2.90
2333 2525 3.208594 GCATGCAGGATCAGTAATGACA 58.791 45.455 14.21 0.00 0.00 3.58
2335 2527 2.173143 TGGCATGCAGGATCAGTAATGA 59.827 45.455 21.36 0.00 0.00 2.57
2350 2542 0.952280 GAGATGTGAGGCATGGCATG 59.048 55.000 22.99 22.99 38.06 4.06
2351 2543 0.178998 GGAGATGTGAGGCATGGCAT 60.179 55.000 22.64 5.72 38.06 4.40
2352 2544 1.225426 GGAGATGTGAGGCATGGCA 59.775 57.895 22.64 0.00 38.06 4.92
2353 2545 1.527844 GGGAGATGTGAGGCATGGC 60.528 63.158 12.14 12.14 38.06 4.40
2366 2564 0.399949 ACACACACAAGGGAGGGAGA 60.400 55.000 0.00 0.00 0.00 3.71
2367 2565 0.250467 CACACACACAAGGGAGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2368 2566 0.986019 ACACACACACAAGGGAGGGA 60.986 55.000 0.00 0.00 0.00 4.20
2371 2569 1.138859 TCTCACACACACACAAGGGAG 59.861 52.381 0.00 0.00 0.00 4.30
2372 2570 1.138859 CTCTCACACACACACAAGGGA 59.861 52.381 0.00 0.00 0.00 4.20
2374 2572 2.101415 TCTCTCTCACACACACACAAGG 59.899 50.000 0.00 0.00 0.00 3.61
2376 2574 3.023832 TCTCTCTCTCACACACACACAA 58.976 45.455 0.00 0.00 0.00 3.33
2378 2576 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
2380 2578 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
2381 2579 3.778954 TCTCTCTCTCTCTCACACACA 57.221 47.619 0.00 0.00 0.00 3.72
2382 2580 3.627577 GGATCTCTCTCTCTCTCACACAC 59.372 52.174 0.00 0.00 0.00 3.82
2384 2582 3.884895 TGGATCTCTCTCTCTCTCACAC 58.115 50.000 0.00 0.00 0.00 3.82
2385 2583 4.079844 ACATGGATCTCTCTCTCTCTCACA 60.080 45.833 0.00 0.00 0.00 3.58
2386 2584 4.464008 ACATGGATCTCTCTCTCTCTCAC 58.536 47.826 0.00 0.00 0.00 3.51
2387 2585 4.413189 AGACATGGATCTCTCTCTCTCTCA 59.587 45.833 0.00 0.00 0.00 3.27
2388 2586 4.978099 AGACATGGATCTCTCTCTCTCTC 58.022 47.826 0.00 0.00 0.00 3.20
2389 2587 5.135383 CAAGACATGGATCTCTCTCTCTCT 58.865 45.833 0.00 0.00 0.00 3.10
2390 2588 4.889409 ACAAGACATGGATCTCTCTCTCTC 59.111 45.833 0.00 0.00 0.00 3.20
2391 2589 4.870636 ACAAGACATGGATCTCTCTCTCT 58.129 43.478 0.00 0.00 0.00 3.10
2392 2590 5.596836 AACAAGACATGGATCTCTCTCTC 57.403 43.478 0.00 0.00 0.00 3.20
2406 2604 1.021202 CCGCCAAGTCAAACAAGACA 58.979 50.000 0.00 0.00 40.98 3.41
2438 2636 4.051922 GCTAATCTCACCACGACCTAATG 58.948 47.826 0.00 0.00 0.00 1.90
2439 2637 3.069729 GGCTAATCTCACCACGACCTAAT 59.930 47.826 0.00 0.00 0.00 1.73
2440 2638 2.429610 GGCTAATCTCACCACGACCTAA 59.570 50.000 0.00 0.00 0.00 2.69
2441 2639 2.029623 GGCTAATCTCACCACGACCTA 58.970 52.381 0.00 0.00 0.00 3.08
2442 2640 0.824759 GGCTAATCTCACCACGACCT 59.175 55.000 0.00 0.00 0.00 3.85
2443 2641 0.824759 AGGCTAATCTCACCACGACC 59.175 55.000 0.00 0.00 0.00 4.79
2444 2642 1.476891 TCAGGCTAATCTCACCACGAC 59.523 52.381 0.00 0.00 0.00 4.34
2445 2643 1.476891 GTCAGGCTAATCTCACCACGA 59.523 52.381 0.00 0.00 0.00 4.35
2446 2644 1.478510 AGTCAGGCTAATCTCACCACG 59.521 52.381 0.00 0.00 0.00 4.94
2447 2645 2.497675 TGAGTCAGGCTAATCTCACCAC 59.502 50.000 10.09 0.00 32.95 4.16
2448 2646 2.820178 TGAGTCAGGCTAATCTCACCA 58.180 47.619 10.09 0.00 32.95 4.17
2449 2647 4.100808 AGAATGAGTCAGGCTAATCTCACC 59.899 45.833 14.47 10.81 39.27 4.02
2633 2840 3.694043 TCGATGAAGAACCAACATCCA 57.306 42.857 0.00 0.00 37.64 3.41
2638 2845 6.292596 GCTTGAGATATCGATGAAGAACCAAC 60.293 42.308 8.54 0.00 0.00 3.77
2639 2846 5.755375 GCTTGAGATATCGATGAAGAACCAA 59.245 40.000 8.54 2.75 0.00 3.67
2643 2850 4.978580 CGTGCTTGAGATATCGATGAAGAA 59.021 41.667 8.54 0.00 0.00 2.52
2645 2852 3.120947 GCGTGCTTGAGATATCGATGAAG 59.879 47.826 8.54 3.73 0.00 3.02
2646 2853 3.052745 GCGTGCTTGAGATATCGATGAA 58.947 45.455 8.54 0.00 0.00 2.57
2647 2854 2.034558 TGCGTGCTTGAGATATCGATGA 59.965 45.455 8.54 0.00 0.00 2.92
2648 2855 2.397549 TGCGTGCTTGAGATATCGATG 58.602 47.619 8.54 0.00 0.00 3.84
2649 2856 2.800881 TGCGTGCTTGAGATATCGAT 57.199 45.000 2.16 2.16 0.00 3.59
2650 2857 2.223805 ACATGCGTGCTTGAGATATCGA 60.224 45.455 13.83 0.00 0.00 3.59
2651 2858 2.097056 CACATGCGTGCTTGAGATATCG 60.097 50.000 13.83 0.00 36.06 2.92
2652 2859 3.516681 CACATGCGTGCTTGAGATATC 57.483 47.619 13.83 0.00 36.06 1.63
2681 2888 1.308998 CAGGTCGTTTCCAAGCTGTT 58.691 50.000 0.00 0.00 36.50 3.16
2693 2900 0.108804 CAGTGGTATTCGCAGGTCGT 60.109 55.000 0.00 0.00 39.67 4.34
2699 2906 3.563808 GGATAAATGCAGTGGTATTCGCA 59.436 43.478 0.00 0.00 39.01 5.10
2700 2907 3.563808 TGGATAAATGCAGTGGTATTCGC 59.436 43.478 0.00 0.00 0.00 4.70
2701 2908 5.056480 TCTGGATAAATGCAGTGGTATTCG 58.944 41.667 10.73 0.00 45.19 3.34
2702 2909 6.942532 TTCTGGATAAATGCAGTGGTATTC 57.057 37.500 10.73 0.00 45.19 1.75
2704 2911 7.716799 TTTTTCTGGATAAATGCAGTGGTAT 57.283 32.000 10.73 0.00 45.19 2.73
2735 2942 8.504811 TCTATACAATCCTGGAAATGTGGATA 57.495 34.615 21.88 13.48 39.43 2.59
2736 2943 7.392766 TCTATACAATCCTGGAAATGTGGAT 57.607 36.000 21.88 13.15 41.85 3.41
2738 2945 7.056635 AGTTCTATACAATCCTGGAAATGTGG 58.943 38.462 21.88 14.26 0.00 4.17
2739 2946 9.784531 ATAGTTCTATACAATCCTGGAAATGTG 57.215 33.333 21.88 11.77 0.00 3.21
2769 2976 5.001874 ACGAACTATGATCTGCGGAGTATA 58.998 41.667 3.10 1.56 0.00 1.47
2774 2981 2.223735 GGAACGAACTATGATCTGCGGA 60.224 50.000 0.00 0.00 0.00 5.54
2775 2982 2.128035 GGAACGAACTATGATCTGCGG 58.872 52.381 0.00 0.00 0.00 5.69
2777 2984 5.050499 CAGATTGGAACGAACTATGATCTGC 60.050 44.000 0.00 0.00 34.74 4.26
2787 3004 1.128692 CTTCCGCAGATTGGAACGAAC 59.871 52.381 0.00 0.00 40.51 3.95
2789 3006 0.391130 CCTTCCGCAGATTGGAACGA 60.391 55.000 0.00 0.00 40.51 3.85
2790 3007 0.391130 TCCTTCCGCAGATTGGAACG 60.391 55.000 0.00 0.00 40.51 3.95
2794 3011 0.811281 GGTTTCCTTCCGCAGATTGG 59.189 55.000 0.00 0.00 0.00 3.16
2795 3012 1.826385 AGGTTTCCTTCCGCAGATTG 58.174 50.000 0.00 0.00 0.00 2.67
2803 3020 1.810755 CTGCCGTTAAGGTTTCCTTCC 59.189 52.381 4.21 0.00 43.57 3.46
2808 3025 4.679654 CACAAAATCTGCCGTTAAGGTTTC 59.320 41.667 0.00 0.00 43.70 2.78
2820 3037 8.810652 TCAGTAAAATTTACCACAAAATCTGC 57.189 30.769 11.83 0.00 0.00 4.26
2901 3118 0.887387 TTGCTAGCGTTGGTTGGGAC 60.887 55.000 10.77 0.00 0.00 4.46
2902 3119 0.887387 GTTGCTAGCGTTGGTTGGGA 60.887 55.000 10.77 0.00 0.00 4.37
2934 3154 0.179187 ATCGTGACTTCAGCGTCGAG 60.179 55.000 0.00 0.00 36.71 4.04
2992 3215 6.239176 GGCATGAGCTACTCTACAGAGTTAAT 60.239 42.308 16.62 3.83 46.10 1.40
3040 3263 2.905075 CCACATAGATCCAGCGAACAA 58.095 47.619 0.00 0.00 0.00 2.83
3081 3308 1.755380 AGCCTAAGCGAACGACCTAAT 59.245 47.619 0.00 0.00 46.67 1.73
3082 3309 1.180029 AGCCTAAGCGAACGACCTAA 58.820 50.000 0.00 0.00 46.67 2.69
3083 3310 2.042686 TAGCCTAAGCGAACGACCTA 57.957 50.000 0.00 0.00 46.67 3.08
3152 3379 1.074889 ACCGGCCCAATTACTCAACTT 59.925 47.619 0.00 0.00 0.00 2.66
3170 3397 2.231721 ACTTGCTTTCTAGACCGAGACC 59.768 50.000 0.00 0.00 0.00 3.85
3173 3400 4.705337 AGTACTTGCTTTCTAGACCGAG 57.295 45.455 0.00 0.00 0.00 4.63
3285 3515 9.173939 CTTGTATACAAAGAAACTTGCTGAAAG 57.826 33.333 18.55 0.00 37.37 2.62
3308 3578 5.066505 GGCCACACTTGTATTTCCTATCTTG 59.933 44.000 0.00 0.00 0.00 3.02
3378 3669 6.639632 ACACAATTGTACAATCTTTGCTCT 57.360 33.333 21.02 0.47 32.60 4.09
3586 4123 7.470935 TTTAGCTACTCCTAATACACACACA 57.529 36.000 0.00 0.00 0.00 3.72
3626 4163 8.480501 TCTACTATTTTTACGCCATTTACTCCT 58.519 33.333 0.00 0.00 0.00 3.69
3715 4253 3.304928 GCAAGTTGGCATATGGATAGCAC 60.305 47.826 4.56 0.00 0.00 4.40
3850 4416 7.934855 AGTCTTCTGCATGTAATTCTCAAAT 57.065 32.000 0.00 0.00 0.00 2.32
3856 4422 5.122869 TCTGCAAGTCTTCTGCATGTAATTC 59.877 40.000 0.00 0.00 37.95 2.17
3865 4431 2.410053 CGTAACTCTGCAAGTCTTCTGC 59.590 50.000 2.65 0.00 37.17 4.26
3895 4473 3.469008 AGATCAACGTTCAGTCCACAA 57.531 42.857 0.00 0.00 0.00 3.33
3896 4474 3.130633 CAAGATCAACGTTCAGTCCACA 58.869 45.455 0.00 0.00 0.00 4.17
3897 4475 3.131396 ACAAGATCAACGTTCAGTCCAC 58.869 45.455 0.00 0.00 0.00 4.02
3898 4476 3.390135 GACAAGATCAACGTTCAGTCCA 58.610 45.455 0.00 0.00 0.00 4.02
3900 4478 3.390135 TGGACAAGATCAACGTTCAGTC 58.610 45.455 0.00 0.49 0.00 3.51
3901 4479 3.469008 TGGACAAGATCAACGTTCAGT 57.531 42.857 0.00 0.00 0.00 3.41
3902 4480 3.425359 GCATGGACAAGATCAACGTTCAG 60.425 47.826 0.00 0.00 0.00 3.02
3907 4528 4.779987 CATATGCATGGACAAGATCAACG 58.220 43.478 10.16 0.00 0.00 4.10
3926 4547 3.096495 GGGTCCAGGCCCTGCATA 61.096 66.667 4.81 0.00 45.22 3.14
4208 4829 4.883300 CGGTAGTCGGCGAGCGTC 62.883 72.222 11.20 0.00 36.68 5.19
4337 4958 1.138883 CACGTCGTCGATGGTCCAT 59.861 57.895 18.28 3.26 40.62 3.41
4422 5043 2.279517 GGCCATGGCGTCGTAGAG 60.280 66.667 29.90 0.00 43.06 2.43
4520 5162 3.810941 ACAAACAATAATCGACACACGGT 59.189 39.130 0.00 0.00 42.82 4.83
4522 5164 5.012655 TCACAAACAATAATCGACACACG 57.987 39.130 0.00 0.00 44.09 4.49
4638 5280 1.541588 TCTCACGGTCACTCACAGATG 59.458 52.381 0.00 0.00 0.00 2.90
4640 5282 1.239347 CTCTCACGGTCACTCACAGA 58.761 55.000 0.00 0.00 0.00 3.41
4644 5286 1.806461 GCCACTCTCACGGTCACTCA 61.806 60.000 0.00 0.00 0.00 3.41
4645 5287 1.080434 GCCACTCTCACGGTCACTC 60.080 63.158 0.00 0.00 0.00 3.51
4646 5288 0.251209 TAGCCACTCTCACGGTCACT 60.251 55.000 0.00 0.00 0.00 3.41
4649 5291 1.136984 CGTAGCCACTCTCACGGTC 59.863 63.158 0.00 0.00 0.00 4.79
4650 5292 1.602888 ACGTAGCCACTCTCACGGT 60.603 57.895 0.00 0.00 38.67 4.83
4651 5293 1.154016 CACGTAGCCACTCTCACGG 60.154 63.158 0.00 0.00 38.67 4.94
4652 5294 0.800631 TACACGTAGCCACTCTCACG 59.199 55.000 0.00 0.00 40.15 4.35
4653 5295 3.293311 TTTACACGTAGCCACTCTCAC 57.707 47.619 0.00 0.00 0.00 3.51
4654 5296 4.325028 TTTTTACACGTAGCCACTCTCA 57.675 40.909 0.00 0.00 0.00 3.27
4679 5321 5.942826 GGAGTTCATCTCAAGAAGGTTTGAT 59.057 40.000 0.00 0.00 44.40 2.57
4834 5476 2.841215 AGGCTGCAGTACGTTAACAAA 58.159 42.857 16.64 0.00 0.00 2.83
4842 5484 0.037326 TCCAAGAAGGCTGCAGTACG 60.037 55.000 16.64 0.00 37.29 3.67
4850 5492 3.792515 AGGTAGTACTTCCAAGAAGGCT 58.207 45.455 19.53 8.54 37.29 4.58
4865 5507 1.947678 GCAGCTCACATGCAAGGTAGT 60.948 52.381 0.00 0.00 43.31 2.73
4866 5508 0.731417 GCAGCTCACATGCAAGGTAG 59.269 55.000 0.00 0.00 43.31 3.18
4898 5544 5.123027 AGCGTAGGTCAGTAGTAGTACAAAC 59.877 44.000 10.33 7.12 0.00 2.93
4907 5557 1.544691 CACCAAGCGTAGGTCAGTAGT 59.455 52.381 0.00 0.00 37.06 2.73
4908 5558 1.544691 ACACCAAGCGTAGGTCAGTAG 59.455 52.381 0.00 0.00 37.06 2.57
4909 5559 1.542915 GACACCAAGCGTAGGTCAGTA 59.457 52.381 0.00 0.00 37.06 2.74
4910 5560 0.317479 GACACCAAGCGTAGGTCAGT 59.683 55.000 0.00 0.00 37.06 3.41
4911 5561 0.317160 TGACACCAAGCGTAGGTCAG 59.683 55.000 0.00 0.00 37.06 3.51
4912 5562 0.973632 ATGACACCAAGCGTAGGTCA 59.026 50.000 0.00 0.00 42.07 4.02
4913 5563 2.094762 AATGACACCAAGCGTAGGTC 57.905 50.000 0.00 0.00 37.06 3.85
4914 5564 2.552315 CAAAATGACACCAAGCGTAGGT 59.448 45.455 0.00 0.00 44.60 3.08
4915 5565 2.095263 CCAAAATGACACCAAGCGTAGG 60.095 50.000 0.00 0.00 0.00 3.18
4916 5566 2.552315 ACCAAAATGACACCAAGCGTAG 59.448 45.455 0.00 0.00 0.00 3.51
4917 5567 2.577700 ACCAAAATGACACCAAGCGTA 58.422 42.857 0.00 0.00 0.00 4.42
4918 5568 1.398692 ACCAAAATGACACCAAGCGT 58.601 45.000 0.00 0.00 0.00 5.07
4919 5569 2.668279 GCTACCAAAATGACACCAAGCG 60.668 50.000 0.00 0.00 0.00 4.68
4920 5570 2.668279 CGCTACCAAAATGACACCAAGC 60.668 50.000 0.00 0.00 0.00 4.01
4921 5571 2.552315 ACGCTACCAAAATGACACCAAG 59.448 45.455 0.00 0.00 0.00 3.61
4922 5572 2.577700 ACGCTACCAAAATGACACCAA 58.422 42.857 0.00 0.00 0.00 3.67
4923 5573 2.264005 ACGCTACCAAAATGACACCA 57.736 45.000 0.00 0.00 0.00 4.17
4924 5574 3.636282 AAACGCTACCAAAATGACACC 57.364 42.857 0.00 0.00 0.00 4.16
4925 5575 6.203647 ACTAAAAACGCTACCAAAATGACAC 58.796 36.000 0.00 0.00 0.00 3.67
4926 5576 6.380095 ACTAAAAACGCTACCAAAATGACA 57.620 33.333 0.00 0.00 0.00 3.58
4927 5577 5.854866 GGACTAAAAACGCTACCAAAATGAC 59.145 40.000 0.00 0.00 0.00 3.06
4928 5578 5.766174 AGGACTAAAAACGCTACCAAAATGA 59.234 36.000 0.00 0.00 0.00 2.57
4929 5579 6.009115 AGGACTAAAAACGCTACCAAAATG 57.991 37.500 0.00 0.00 0.00 2.32
4930 5580 6.644248 AAGGACTAAAAACGCTACCAAAAT 57.356 33.333 0.00 0.00 0.00 1.82
4931 5581 6.319405 AGAAAGGACTAAAAACGCTACCAAAA 59.681 34.615 0.00 0.00 0.00 2.44
4932 5582 5.824097 AGAAAGGACTAAAAACGCTACCAAA 59.176 36.000 0.00 0.00 0.00 3.28
4933 5583 5.370679 AGAAAGGACTAAAAACGCTACCAA 58.629 37.500 0.00 0.00 0.00 3.67
4934 5584 4.964593 AGAAAGGACTAAAAACGCTACCA 58.035 39.130 0.00 0.00 0.00 3.25
4935 5585 5.936686 AAGAAAGGACTAAAAACGCTACC 57.063 39.130 0.00 0.00 0.00 3.18
4936 5586 9.378597 CTTAAAAGAAAGGACTAAAAACGCTAC 57.621 33.333 0.00 0.00 0.00 3.58
4937 5587 8.071967 GCTTAAAAGAAAGGACTAAAAACGCTA 58.928 33.333 0.00 0.00 0.00 4.26
4938 5588 6.916387 GCTTAAAAGAAAGGACTAAAAACGCT 59.084 34.615 0.00 0.00 0.00 5.07
4939 5589 6.916387 AGCTTAAAAGAAAGGACTAAAAACGC 59.084 34.615 0.00 0.00 0.00 4.84
4940 5590 8.126700 TCAGCTTAAAAGAAAGGACTAAAAACG 58.873 33.333 0.00 0.00 0.00 3.60
4941 5591 9.797556 TTCAGCTTAAAAGAAAGGACTAAAAAC 57.202 29.630 0.00 0.00 0.00 2.43
4942 5592 9.797556 GTTCAGCTTAAAAGAAAGGACTAAAAA 57.202 29.630 0.00 0.00 0.00 1.94
4943 5593 9.185680 AGTTCAGCTTAAAAGAAAGGACTAAAA 57.814 29.630 0.00 0.00 0.00 1.52
4944 5594 8.747538 AGTTCAGCTTAAAAGAAAGGACTAAA 57.252 30.769 0.00 0.00 0.00 1.85
4945 5595 7.170998 CGAGTTCAGCTTAAAAGAAAGGACTAA 59.829 37.037 0.00 0.00 0.00 2.24
4946 5596 6.645415 CGAGTTCAGCTTAAAAGAAAGGACTA 59.355 38.462 0.00 0.00 0.00 2.59
4947 5597 5.467063 CGAGTTCAGCTTAAAAGAAAGGACT 59.533 40.000 0.00 0.00 0.00 3.85
4948 5598 5.334182 CCGAGTTCAGCTTAAAAGAAAGGAC 60.334 44.000 0.00 0.00 0.00 3.85
4949 5599 4.755123 CCGAGTTCAGCTTAAAAGAAAGGA 59.245 41.667 0.00 0.00 0.00 3.36
4950 5600 4.515567 ACCGAGTTCAGCTTAAAAGAAAGG 59.484 41.667 0.00 0.00 0.00 3.11
4951 5601 5.674933 ACCGAGTTCAGCTTAAAAGAAAG 57.325 39.130 0.00 0.00 0.00 2.62
4952 5602 7.442969 TCATAACCGAGTTCAGCTTAAAAGAAA 59.557 33.333 0.00 0.00 0.00 2.52
4953 5603 6.932400 TCATAACCGAGTTCAGCTTAAAAGAA 59.068 34.615 0.00 0.00 0.00 2.52
4954 5604 6.460781 TCATAACCGAGTTCAGCTTAAAAGA 58.539 36.000 0.00 0.00 0.00 2.52
4955 5605 6.721571 TCATAACCGAGTTCAGCTTAAAAG 57.278 37.500 0.00 0.00 0.00 2.27
4956 5606 6.708949 AGTTCATAACCGAGTTCAGCTTAAAA 59.291 34.615 0.00 0.00 0.00 1.52
4957 5607 6.228258 AGTTCATAACCGAGTTCAGCTTAAA 58.772 36.000 0.00 0.00 0.00 1.52
4958 5608 5.790593 AGTTCATAACCGAGTTCAGCTTAA 58.209 37.500 0.00 0.00 0.00 1.85
4959 5609 5.401531 AGTTCATAACCGAGTTCAGCTTA 57.598 39.130 0.00 0.00 0.00 3.09
4960 5610 4.273148 AGTTCATAACCGAGTTCAGCTT 57.727 40.909 0.00 0.00 0.00 3.74
4961 5611 3.963428 AGTTCATAACCGAGTTCAGCT 57.037 42.857 0.00 0.00 0.00 4.24
4962 5612 5.147162 CAAAAGTTCATAACCGAGTTCAGC 58.853 41.667 0.00 0.00 0.00 4.26
4963 5613 5.238650 ACCAAAAGTTCATAACCGAGTTCAG 59.761 40.000 0.00 0.00 0.00 3.02
4964 5614 5.008217 CACCAAAAGTTCATAACCGAGTTCA 59.992 40.000 0.00 0.00 0.00 3.18
4965 5615 5.449304 CACCAAAAGTTCATAACCGAGTTC 58.551 41.667 0.00 0.00 0.00 3.01
4966 5616 4.277423 CCACCAAAAGTTCATAACCGAGTT 59.723 41.667 0.00 0.00 0.00 3.01
4967 5617 3.818773 CCACCAAAAGTTCATAACCGAGT 59.181 43.478 0.00 0.00 0.00 4.18
4968 5618 3.190535 CCCACCAAAAGTTCATAACCGAG 59.809 47.826 0.00 0.00 0.00 4.63
4969 5619 3.150767 CCCACCAAAAGTTCATAACCGA 58.849 45.455 0.00 0.00 0.00 4.69
4970 5620 2.230266 CCCCACCAAAAGTTCATAACCG 59.770 50.000 0.00 0.00 0.00 4.44
4971 5621 3.236047 ACCCCACCAAAAGTTCATAACC 58.764 45.455 0.00 0.00 0.00 2.85
4972 5622 4.342665 TGAACCCCACCAAAAGTTCATAAC 59.657 41.667 0.54 0.00 42.61 1.89
4973 5623 4.547671 TGAACCCCACCAAAAGTTCATAA 58.452 39.130 0.54 0.00 42.61 1.90
4974 5624 4.148838 CTGAACCCCACCAAAAGTTCATA 58.851 43.478 5.02 0.00 45.38 2.15
4975 5625 2.965147 CTGAACCCCACCAAAAGTTCAT 59.035 45.455 5.02 0.00 45.38 2.57
4976 5626 2.291930 ACTGAACCCCACCAAAAGTTCA 60.292 45.455 4.55 4.55 44.61 3.18
4977 5627 2.384828 ACTGAACCCCACCAAAAGTTC 58.615 47.619 0.00 0.00 39.22 3.01
4978 5628 2.543037 ACTGAACCCCACCAAAAGTT 57.457 45.000 0.00 0.00 0.00 2.66
4979 5629 3.673543 TTACTGAACCCCACCAAAAGT 57.326 42.857 0.00 0.00 0.00 2.66
4980 5630 4.148838 TCATTACTGAACCCCACCAAAAG 58.851 43.478 0.00 0.00 0.00 2.27
4981 5631 4.186077 TCATTACTGAACCCCACCAAAA 57.814 40.909 0.00 0.00 0.00 2.44
4982 5632 3.885976 TCATTACTGAACCCCACCAAA 57.114 42.857 0.00 0.00 0.00 3.28
4983 5633 3.885976 TTCATTACTGAACCCCACCAA 57.114 42.857 0.00 0.00 36.46 3.67
4984 5634 3.885976 TTTCATTACTGAACCCCACCA 57.114 42.857 0.00 0.00 41.05 4.17
4985 5635 4.142469 CGATTTTCATTACTGAACCCCACC 60.142 45.833 0.00 0.00 41.05 4.61
4986 5636 4.142469 CCGATTTTCATTACTGAACCCCAC 60.142 45.833 0.00 0.00 41.05 4.61
4987 5637 4.013728 CCGATTTTCATTACTGAACCCCA 58.986 43.478 0.00 0.00 41.05 4.96
4988 5638 3.380320 CCCGATTTTCATTACTGAACCCC 59.620 47.826 0.00 0.00 41.05 4.95
4989 5639 3.181490 GCCCGATTTTCATTACTGAACCC 60.181 47.826 0.00 0.00 41.05 4.11
4990 5640 3.442273 TGCCCGATTTTCATTACTGAACC 59.558 43.478 0.00 0.00 41.05 3.62
4991 5641 4.695217 TGCCCGATTTTCATTACTGAAC 57.305 40.909 0.00 0.00 41.05 3.18
4992 5642 4.380444 GCTTGCCCGATTTTCATTACTGAA 60.380 41.667 0.00 0.00 39.62 3.02
4993 5643 3.128589 GCTTGCCCGATTTTCATTACTGA 59.871 43.478 0.00 0.00 0.00 3.41
4994 5644 3.438360 GCTTGCCCGATTTTCATTACTG 58.562 45.455 0.00 0.00 0.00 2.74
4995 5645 2.427095 GGCTTGCCCGATTTTCATTACT 59.573 45.455 0.00 0.00 0.00 2.24
4996 5646 2.481276 GGGCTTGCCCGATTTTCATTAC 60.481 50.000 15.52 0.00 0.00 1.89
4997 5647 1.754226 GGGCTTGCCCGATTTTCATTA 59.246 47.619 15.52 0.00 0.00 1.90
4998 5648 0.536724 GGGCTTGCCCGATTTTCATT 59.463 50.000 15.52 0.00 0.00 2.57
4999 5649 0.324645 AGGGCTTGCCCGATTTTCAT 60.325 50.000 23.26 2.09 34.52 2.57
5000 5650 0.541764 AAGGGCTTGCCCGATTTTCA 60.542 50.000 23.26 0.00 34.52 2.69
5001 5651 0.173481 GAAGGGCTTGCCCGATTTTC 59.827 55.000 23.26 17.35 34.52 2.29
5002 5652 0.251787 AGAAGGGCTTGCCCGATTTT 60.252 50.000 23.26 13.09 34.52 1.82
5003 5653 0.251787 AAGAAGGGCTTGCCCGATTT 60.252 50.000 23.26 13.44 34.93 2.17
5004 5654 0.251787 AAAGAAGGGCTTGCCCGATT 60.252 50.000 23.26 14.15 36.80 3.34
5005 5655 0.967380 CAAAGAAGGGCTTGCCCGAT 60.967 55.000 23.26 16.88 36.80 4.18
5006 5656 1.603455 CAAAGAAGGGCTTGCCCGA 60.603 57.895 23.26 0.00 36.80 5.14
5007 5657 0.967380 ATCAAAGAAGGGCTTGCCCG 60.967 55.000 23.26 9.51 36.80 6.13
5008 5658 2.143876 TATCAAAGAAGGGCTTGCCC 57.856 50.000 22.29 22.29 36.80 5.36
5009 5659 4.535526 TTTTATCAAAGAAGGGCTTGCC 57.464 40.909 2.49 2.49 36.80 4.52
5035 5685 3.317149 GGAAGGAACCAAGCGTAGTTTTT 59.683 43.478 0.00 0.00 0.00 1.94
5036 5686 2.882761 GGAAGGAACCAAGCGTAGTTTT 59.117 45.455 0.00 0.00 0.00 2.43
5037 5687 2.501261 GGAAGGAACCAAGCGTAGTTT 58.499 47.619 0.00 0.00 0.00 2.66
5038 5688 1.607251 CGGAAGGAACCAAGCGTAGTT 60.607 52.381 0.00 0.00 0.00 2.24
5039 5689 0.037605 CGGAAGGAACCAAGCGTAGT 60.038 55.000 0.00 0.00 0.00 2.73
5062 5712 1.069823 CATGCGGATCAGAGTAAGGCT 59.930 52.381 0.00 0.00 0.00 4.58
5068 5718 1.202510 GCTTCTCATGCGGATCAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
5069 5719 1.068895 AGCTTCTCATGCGGATCAGAG 59.931 52.381 0.00 0.00 35.28 3.35
5077 5729 0.450583 ATTGCACAGCTTCTCATGCG 59.549 50.000 0.00 0.00 41.07 4.73
5098 5750 3.373748 TGCCGTTGATGCAACAGTAATAG 59.626 43.478 10.48 0.00 43.70 1.73
5104 5756 1.210931 CCTGCCGTTGATGCAACAG 59.789 57.895 10.48 0.67 43.70 3.16
5109 5761 2.401766 CCTCACCTGCCGTTGATGC 61.402 63.158 0.00 0.00 0.00 3.91
5117 5769 2.435059 GAACTCGCCTCACCTGCC 60.435 66.667 0.00 0.00 0.00 4.85
5128 5780 2.604914 CTGTCGATTCCATTGGAACTCG 59.395 50.000 26.88 26.88 45.07 4.18
5145 5797 1.186267 AGGGGAGTGACCGTTCTGTC 61.186 60.000 0.00 0.00 40.11 3.51
5146 5798 1.152312 AGGGGAGTGACCGTTCTGT 60.152 57.895 0.00 0.00 40.11 3.41
5155 5807 1.623811 GTTAACAGCTCAGGGGAGTGA 59.376 52.381 0.00 0.00 43.37 3.41
5185 5837 3.393278 TCAAAGTGCTAAACCTACCACCT 59.607 43.478 0.00 0.00 0.00 4.00
5286 5941 0.460987 GACAAGGAGGAGCGGACATG 60.461 60.000 0.00 0.00 0.00 3.21
5287 5942 1.617947 GGACAAGGAGGAGCGGACAT 61.618 60.000 0.00 0.00 0.00 3.06
5331 5986 3.740397 GCGCAAGTGCTGATGCCA 61.740 61.111 0.30 0.00 39.39 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.