Multiple sequence alignment - TraesCS4B01G282400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G282400 chr4B 100.000 4116 0 0 1 4116 565744613 565740498 0.000000e+00 7601.0
1 TraesCS4B01G282400 chr4B 76.095 845 158 26 1216 2020 568634674 568635514 6.410000e-108 401.0
2 TraesCS4B01G282400 chr4B 92.353 170 13 0 393 562 80990644 80990813 4.110000e-60 243.0
3 TraesCS4B01G282400 chr4B 77.117 437 78 14 1769 2202 24979972 24980389 2.470000e-57 233.0
4 TraesCS4B01G282400 chr4B 81.250 224 37 3 1946 2167 568605577 568605797 4.230000e-40 176.0
5 TraesCS4B01G282400 chr4B 83.036 112 13 3 3922 4033 653488441 653488546 3.390000e-16 97.1
6 TraesCS4B01G282400 chr4B 95.238 42 2 0 2055 2096 568636743 568636784 2.660000e-07 67.6
7 TraesCS4B01G282400 chr4D 95.130 2772 90 18 560 3318 452558141 452555402 0.000000e+00 4329.0
8 TraesCS4B01G282400 chr4D 96.203 395 15 0 1 395 452558533 452558139 0.000000e+00 647.0
9 TraesCS4B01G282400 chr4D 76.382 1266 210 59 880 2096 455618604 455619829 2.120000e-167 599.0
10 TraesCS4B01G282400 chr4D 74.700 1585 267 77 710 2210 452563281 452561747 2.130000e-162 582.0
11 TraesCS4B01G282400 chr4D 75.271 1290 228 60 859 2096 455624187 455625437 7.830000e-147 531.0
12 TraesCS4B01G282400 chr4D 95.516 223 8 2 3349 3570 452555405 452555184 5.060000e-94 355.0
13 TraesCS4B01G282400 chr4D 76.935 646 132 10 1464 2096 455648721 455649362 6.550000e-93 351.0
14 TraesCS4B01G282400 chr4D 91.477 176 14 1 393 568 97930633 97930459 1.480000e-59 241.0
15 TraesCS4B01G282400 chr4D 73.893 655 133 25 1464 2096 455530715 455531353 1.150000e-55 228.0
16 TraesCS4B01G282400 chr4D 96.190 105 2 1 3694 3796 452554991 452554887 1.970000e-38 171.0
17 TraesCS4B01G282400 chr4D 80.426 235 36 10 2996 3223 455601792 455602023 1.970000e-38 171.0
18 TraesCS4B01G282400 chr4A 94.299 1719 60 16 1860 3565 14345804 14347497 0.000000e+00 2597.0
19 TraesCS4B01G282400 chr4A 92.568 767 25 13 710 1466 14345063 14345807 0.000000e+00 1072.0
20 TraesCS4B01G282400 chr4A 75.562 1289 228 52 930 2173 14340373 14341619 4.650000e-154 555.0
21 TraesCS4B01G282400 chr4A 93.701 127 7 1 3570 3695 14347560 14347686 5.430000e-44 189.0
22 TraesCS4B01G282400 chr4A 81.545 233 35 8 2996 3222 12209187 12208957 7.030000e-43 185.0
23 TraesCS4B01G282400 chr4A 80.263 228 40 3 1945 2170 12209997 12209773 2.540000e-37 167.0
24 TraesCS4B01G282400 chr4A 88.189 127 9 1 2 122 14344147 14344273 3.320000e-31 147.0
25 TraesCS4B01G282400 chr4A 83.893 149 22 2 1949 2096 12189920 12189773 1.540000e-29 141.0
26 TraesCS4B01G282400 chr4A 81.609 174 25 5 2656 2826 14353434 14353603 2.000000e-28 137.0
27 TraesCS4B01G282400 chr4A 89.720 107 10 1 616 721 14344938 14345044 7.180000e-28 135.0
28 TraesCS4B01G282400 chr4A 91.358 81 7 0 117 197 14344311 14344391 1.210000e-20 111.0
29 TraesCS4B01G282400 chr4A 84.762 105 8 5 3925 4027 83770917 83770819 9.420000e-17 99.0
30 TraesCS4B01G282400 chr4A 83.333 114 7 3 290 392 14344633 14344745 1.220000e-15 95.3
31 TraesCS4B01G282400 chr5D 74.269 1026 209 38 1222 2210 431617720 431616713 8.350000e-102 381.0
32 TraesCS4B01G282400 chr5D 89.189 185 18 2 398 581 564973767 564973584 3.200000e-56 230.0
33 TraesCS4B01G282400 chr5D 86.735 98 8 2 3932 4029 240428127 240428035 2.020000e-18 104.0
34 TraesCS4B01G282400 chr5D 83.929 112 13 2 3919 4030 300705954 300706060 7.280000e-18 102.0
35 TraesCS4B01G282400 chr5A 74.099 1027 209 40 1222 2210 546703311 546702304 1.810000e-98 370.0
36 TraesCS4B01G282400 chr5A 90.857 175 16 0 388 562 382566628 382566802 6.880000e-58 235.0
37 TraesCS4B01G282400 chr5A 85.577 104 10 2 3925 4028 466573224 466573322 2.020000e-18 104.0
38 TraesCS4B01G282400 chr5B 73.782 1026 214 39 1222 2210 521160940 521159933 1.820000e-93 353.0
39 TraesCS4B01G282400 chr6A 91.429 175 15 0 398 572 105041911 105042085 1.480000e-59 241.0
40 TraesCS4B01G282400 chr6A 91.379 174 15 0 398 571 328255356 328255183 5.320000e-59 239.0
41 TraesCS4B01G282400 chr2D 90.909 176 16 0 397 572 161906851 161907026 1.910000e-58 237.0
42 TraesCS4B01G282400 chr2D 84.615 117 10 5 3926 4042 621556914 621557022 4.350000e-20 110.0
43 TraesCS4B01G282400 chr7B 92.169 166 13 0 397 562 714316107 714315942 6.880000e-58 235.0
44 TraesCS4B01G282400 chr2A 90.857 175 16 0 394 568 663656573 663656399 6.880000e-58 235.0
45 TraesCS4B01G282400 chr7D 86.139 101 8 3 3926 4026 519264637 519264543 2.020000e-18 104.0
46 TraesCS4B01G282400 chr7D 84.259 108 10 4 3927 4033 226690437 226690336 9.420000e-17 99.0
47 TraesCS4B01G282400 chr6D 86.458 96 7 2 3928 4022 249956876 249956966 2.620000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G282400 chr4B 565740498 565744613 4115 True 7601.0000 7601 100.00000 1 4116 1 chr4B.!!$R1 4115
1 TraesCS4B01G282400 chr4B 568634674 568636784 2110 False 234.3000 401 85.66650 1216 2096 2 chr4B.!!$F5 880
2 TraesCS4B01G282400 chr4D 452554887 452563281 8394 True 1216.8000 4329 91.54780 1 3796 5 chr4D.!!$R2 3795
3 TraesCS4B01G282400 chr4D 455618604 455619829 1225 False 599.0000 599 76.38200 880 2096 1 chr4D.!!$F3 1216
4 TraesCS4B01G282400 chr4D 455624187 455625437 1250 False 531.0000 531 75.27100 859 2096 1 chr4D.!!$F4 1237
5 TraesCS4B01G282400 chr4D 455648721 455649362 641 False 351.0000 351 76.93500 1464 2096 1 chr4D.!!$F5 632
6 TraesCS4B01G282400 chr4D 455530715 455531353 638 False 228.0000 228 73.89300 1464 2096 1 chr4D.!!$F1 632
7 TraesCS4B01G282400 chr4A 14340373 14347686 7313 False 612.6625 2597 88.59125 2 3695 8 chr4A.!!$F2 3693
8 TraesCS4B01G282400 chr5D 431616713 431617720 1007 True 381.0000 381 74.26900 1222 2210 1 chr5D.!!$R2 988
9 TraesCS4B01G282400 chr5A 546702304 546703311 1007 True 370.0000 370 74.09900 1222 2210 1 chr5A.!!$R1 988
10 TraesCS4B01G282400 chr5B 521159933 521160940 1007 True 353.0000 353 73.78200 1222 2210 1 chr5B.!!$R1 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 5650 0.877071 GTCATGGTGTGCTGACTTGG 59.123 55.0 0.0 0.0 38.94 3.61 F
1717 6906 0.732571 CATCGTGTACAACATGGGCC 59.267 55.0 0.0 0.0 35.86 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 7024 0.541063 TCTAGGCTTCACCACGGACA 60.541 55.0 0.0 0.0 43.14 4.02 R
3327 9815 0.401395 TTCTGAACACCACCTCCCCT 60.401 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 4816 5.833131 TCTAACTTGTTCTTTGATTGCCCTT 59.167 36.000 0.00 0.00 0.00 3.95
56 4818 5.357742 ACTTGTTCTTTGATTGCCCTTTT 57.642 34.783 0.00 0.00 0.00 2.27
189 4994 5.762179 TGTGATCTTCACCTTGGTAAGAT 57.238 39.130 16.71 16.71 46.40 2.40
248 5147 3.191581 TCAGACAACTAGCAGAGCTACAC 59.808 47.826 0.00 0.00 40.44 2.90
284 5183 6.206634 GTGACACATGAAAATGGGAAGAACTA 59.793 38.462 0.00 0.00 0.00 2.24
328 5283 3.006217 TCACATGCTGCGATCTAAGCTAT 59.994 43.478 15.13 6.76 40.21 2.97
402 5468 7.520686 GAGATTAGCTCATACGTAAGTACTCC 58.479 42.308 0.00 0.00 46.86 3.85
403 5469 7.361116 GAGATTAGCTCATACGTAAGTACTCCC 60.361 44.444 0.00 0.00 46.86 4.30
411 5477 3.142404 CGTAAGTACTCCCTCCGTTTC 57.858 52.381 0.00 0.00 0.00 2.78
412 5478 2.751806 CGTAAGTACTCCCTCCGTTTCT 59.248 50.000 0.00 0.00 0.00 2.52
413 5479 3.941483 CGTAAGTACTCCCTCCGTTTCTA 59.059 47.826 0.00 0.00 0.00 2.10
414 5480 4.396166 CGTAAGTACTCCCTCCGTTTCTAA 59.604 45.833 0.00 0.00 0.00 2.10
415 5481 5.106157 CGTAAGTACTCCCTCCGTTTCTAAA 60.106 44.000 0.00 0.00 0.00 1.85
416 5482 6.405176 CGTAAGTACTCCCTCCGTTTCTAAAT 60.405 42.308 0.00 0.00 0.00 1.40
417 5483 7.201732 CGTAAGTACTCCCTCCGTTTCTAAATA 60.202 40.741 0.00 0.00 0.00 1.40
418 5484 7.672122 AAGTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
419 5485 7.672122 AGTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
420 5486 8.087303 AGTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
421 5487 7.985752 AGTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
422 5488 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
423 5489 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
424 5490 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
425 5491 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
426 5492 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
427 5493 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
428 5494 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
502 5568 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
503 5569 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
504 5570 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
505 5571 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
506 5572 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
507 5573 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
508 5574 9.494271 GTAGATTCACTCATTTTGCTCCATATA 57.506 33.333 0.00 0.00 0.00 0.86
513 5579 9.494271 TTCACTCATTTTGCTCCATATATAGTC 57.506 33.333 0.00 0.00 0.00 2.59
514 5580 8.650490 TCACTCATTTTGCTCCATATATAGTCA 58.350 33.333 0.00 0.00 0.00 3.41
515 5581 9.445878 CACTCATTTTGCTCCATATATAGTCAT 57.554 33.333 0.00 0.00 0.00 3.06
522 5588 9.625747 TTTGCTCCATATATAGTCATTTGTTGA 57.374 29.630 0.00 0.00 0.00 3.18
523 5589 9.625747 TTGCTCCATATATAGTCATTTGTTGAA 57.374 29.630 0.00 0.00 35.70 2.69
524 5590 9.625747 TGCTCCATATATAGTCATTTGTTGAAA 57.374 29.630 0.00 0.00 35.70 2.69
554 5620 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
555 5621 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
556 5622 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
557 5623 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
558 5624 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
559 5625 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
560 5626 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
561 5627 7.854337 ACAAATATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
584 5650 0.877071 GTCATGGTGTGCTGACTTGG 59.123 55.000 0.00 0.00 38.94 3.61
732 5865 4.481930 TTGTTTGTTTGAGCAGATACCG 57.518 40.909 0.00 0.00 0.00 4.02
794 5927 2.510906 CCCAGCCCATTCCCGTAG 59.489 66.667 0.00 0.00 0.00 3.51
845 5978 3.517100 TCATCTCTCCCAACAGAAGAAGG 59.483 47.826 0.00 0.00 0.00 3.46
846 5979 2.260822 TCTCTCCCAACAGAAGAAGGG 58.739 52.381 0.00 0.00 42.86 3.95
1099 6255 1.228675 GGCATCATGTCCCATCCCC 60.229 63.158 0.00 0.00 0.00 4.81
1198 6354 2.890474 ACATCGATGTTCGCGGCC 60.890 61.111 25.18 0.00 40.21 6.13
1326 6482 2.448453 CTCTTCGACACCCCTAAGAGT 58.552 52.381 0.00 0.00 39.93 3.24
1717 6906 0.732571 CATCGTGTACAACATGGGCC 59.267 55.000 0.00 0.00 35.86 5.80
1743 6932 5.226396 CGAGAACTATCTGTGATCAATCCC 58.774 45.833 0.00 0.00 35.54 3.85
1837 7059 3.119424 GCCTAGACTCTTACTGTGGTCAC 60.119 52.174 0.00 0.00 0.00 3.67
1843 7065 3.157881 CTCTTACTGTGGTCACTGGAGA 58.842 50.000 11.59 11.88 35.00 3.71
2117 8553 8.334734 AGGTATACAGAGAAACCACTTCTACTA 58.665 37.037 5.01 0.00 44.82 1.82
2179 8620 5.643777 ACACCATTGACTACTATTTCAGTGC 59.356 40.000 0.00 0.00 38.24 4.40
2180 8621 5.643348 CACCATTGACTACTATTTCAGTGCA 59.357 40.000 0.00 0.00 38.24 4.57
2187 8628 5.853936 ACTACTATTTCAGTGCACTTGTGA 58.146 37.500 18.94 10.16 38.24 3.58
2228 8669 1.575244 ACGTCGCGAGTATGTAGCTA 58.425 50.000 10.24 0.00 0.00 3.32
2283 8724 6.749484 ATAGATACTCTATGCAGGTCTGCTCA 60.749 42.308 21.50 9.87 42.70 4.26
2310 8751 4.584325 TGCTTGGTTTTCTGTTTGATAGCT 59.416 37.500 0.00 0.00 0.00 3.32
2341 8782 5.779922 TCCTACGGCTACATCATGAATTAC 58.220 41.667 0.00 0.00 0.00 1.89
2343 8784 6.717997 TCCTACGGCTACATCATGAATTACTA 59.282 38.462 0.00 0.00 0.00 1.82
2344 8785 7.030165 CCTACGGCTACATCATGAATTACTAG 58.970 42.308 0.00 0.00 0.00 2.57
2345 8786 5.230942 ACGGCTACATCATGAATTACTAGC 58.769 41.667 0.00 5.80 0.00 3.42
2346 8787 5.011125 ACGGCTACATCATGAATTACTAGCT 59.989 40.000 0.00 0.00 0.00 3.32
2348 8789 6.528423 CGGCTACATCATGAATTACTAGCTAC 59.472 42.308 0.00 0.00 0.00 3.58
2349 8790 7.378966 GGCTACATCATGAATTACTAGCTACA 58.621 38.462 0.00 0.00 0.00 2.74
2350 8791 8.037758 GGCTACATCATGAATTACTAGCTACAT 58.962 37.037 0.00 0.00 0.00 2.29
2355 8796 9.283420 CATCATGAATTACTAGCTACATACTCG 57.717 37.037 0.00 0.00 0.00 4.18
2356 8797 7.306213 TCATGAATTACTAGCTACATACTCGC 58.694 38.462 0.00 0.00 0.00 5.03
2357 8798 5.686834 TGAATTACTAGCTACATACTCGCG 58.313 41.667 0.00 0.00 0.00 5.87
2391 8833 4.299586 TGTTGGCCATCTCAGTTCATTA 57.700 40.909 6.09 0.00 0.00 1.90
2434 8876 4.982295 CGCAATTACGAGAACATATCCAGA 59.018 41.667 0.00 0.00 34.06 3.86
2449 8891 8.237811 ACATATCCAGAACTTTCTTTGTGTTT 57.762 30.769 0.00 0.00 34.74 2.83
2452 8894 5.961272 TCCAGAACTTTCTTTGTGTTTTCC 58.039 37.500 0.00 0.00 34.74 3.13
2473 8915 1.156736 GTGACAAATCACGGTCTGGG 58.843 55.000 0.00 0.00 45.66 4.45
2756 9198 9.929180 GCCTATGTGTTAGTAGATATGAATGAA 57.071 33.333 0.00 0.00 0.00 2.57
2810 9252 6.699642 GCAAAATTAACAGACTTGGCTTTACA 59.300 34.615 0.00 0.00 0.00 2.41
2826 9268 4.627035 GCTTTACAAAATTGTCCAGCCATC 59.373 41.667 14.40 0.00 42.35 3.51
2931 9381 2.673200 GCCATGAGCAGGACCCTGA 61.673 63.158 19.55 0.00 46.30 3.86
3005 9455 5.363005 GGGAAAGTAGACATAAGTAGGCTCA 59.637 44.000 0.00 0.00 0.00 4.26
3017 9467 8.387039 ACATAAGTAGGCTCATCTCTACTCATA 58.613 37.037 0.00 0.00 43.59 2.15
3123 9576 7.764331 GGTGGTACAACGATATAACCAAATTT 58.236 34.615 0.00 0.00 44.16 1.82
3188 9641 5.290885 GCTTTTTGAAATGAACTTCGGTGTT 59.709 36.000 0.00 0.00 0.00 3.32
3229 9682 2.882761 GGACAGTTTGGTTAGGGTTCAC 59.117 50.000 0.00 0.00 0.00 3.18
3230 9683 3.547746 GACAGTTTGGTTAGGGTTCACA 58.452 45.455 0.00 0.00 0.00 3.58
3258 9711 1.407989 GCTCTATTCTGTGCTTGGGCT 60.408 52.381 0.00 0.00 39.59 5.19
3277 9730 4.142026 GGGCTGAAACTAAGTTGGTTGTTT 60.142 41.667 5.27 2.23 35.64 2.83
3320 9808 5.940603 GACAAAGAGTCATGTCGATACTG 57.059 43.478 11.78 0.00 46.77 2.74
3321 9809 5.641709 GACAAAGAGTCATGTCGATACTGA 58.358 41.667 11.78 0.00 46.77 3.41
3322 9810 6.214191 ACAAAGAGTCATGTCGATACTGAT 57.786 37.500 0.00 0.00 0.00 2.90
3323 9811 6.038985 ACAAAGAGTCATGTCGATACTGATG 58.961 40.000 0.00 0.00 0.00 3.07
3324 9812 4.844998 AGAGTCATGTCGATACTGATGG 57.155 45.455 0.00 0.00 0.00 3.51
3325 9813 4.464947 AGAGTCATGTCGATACTGATGGA 58.535 43.478 0.00 0.00 0.00 3.41
3326 9814 4.277174 AGAGTCATGTCGATACTGATGGAC 59.723 45.833 0.00 0.00 40.28 4.02
3335 9823 4.488303 CTGATGGACAGGGGAGGT 57.512 61.111 0.00 0.00 42.39 3.85
3336 9824 1.910722 CTGATGGACAGGGGAGGTG 59.089 63.158 0.00 0.00 42.39 4.00
3337 9825 1.616327 TGATGGACAGGGGAGGTGG 60.616 63.158 0.00 0.00 0.00 4.61
3338 9826 1.616628 GATGGACAGGGGAGGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
3339 9827 1.915078 GATGGACAGGGGAGGTGGTG 61.915 65.000 0.00 0.00 0.00 4.17
3340 9828 2.529389 GGACAGGGGAGGTGGTGT 60.529 66.667 0.00 0.00 0.00 4.16
3341 9829 2.154074 GGACAGGGGAGGTGGTGTT 61.154 63.158 0.00 0.00 0.00 3.32
3342 9830 1.375326 GACAGGGGAGGTGGTGTTC 59.625 63.158 0.00 0.00 0.00 3.18
3343 9831 1.385347 ACAGGGGAGGTGGTGTTCA 60.385 57.895 0.00 0.00 0.00 3.18
3344 9832 1.376466 CAGGGGAGGTGGTGTTCAG 59.624 63.158 0.00 0.00 0.00 3.02
3345 9833 1.127567 CAGGGGAGGTGGTGTTCAGA 61.128 60.000 0.00 0.00 0.00 3.27
3346 9834 0.401395 AGGGGAGGTGGTGTTCAGAA 60.401 55.000 0.00 0.00 0.00 3.02
3347 9835 0.476771 GGGGAGGTGGTGTTCAGAAA 59.523 55.000 0.00 0.00 0.00 2.52
3348 9836 1.545651 GGGGAGGTGGTGTTCAGAAAG 60.546 57.143 0.00 0.00 0.00 2.62
3349 9837 1.420138 GGGAGGTGGTGTTCAGAAAGA 59.580 52.381 0.00 0.00 0.00 2.52
3350 9838 2.040412 GGGAGGTGGTGTTCAGAAAGAT 59.960 50.000 0.00 0.00 0.00 2.40
3351 9839 3.263425 GGGAGGTGGTGTTCAGAAAGATA 59.737 47.826 0.00 0.00 0.00 1.98
3472 9960 1.881925 GCATGCCGGCCATCTGTATTA 60.882 52.381 26.77 0.00 29.71 0.98
3480 9968 4.503123 CCGGCCATCTGTATTACATTCTCA 60.503 45.833 2.24 0.00 0.00 3.27
3487 9975 7.500227 CCATCTGTATTACATTCTCAATGGTGT 59.500 37.037 0.00 0.00 43.21 4.16
3565 10053 6.266168 TGTGTTTTCTGTTGACAAATCACT 57.734 33.333 0.00 0.00 34.99 3.41
3566 10054 6.092092 TGTGTTTTCTGTTGACAAATCACTG 58.908 36.000 0.00 0.00 34.99 3.66
3567 10055 5.004726 GTGTTTTCTGTTGACAAATCACTGC 59.995 40.000 0.00 0.00 33.38 4.40
3568 10056 5.105797 TGTTTTCTGTTGACAAATCACTGCT 60.106 36.000 0.00 0.00 33.38 4.24
3598 10144 5.104817 AGGATTCAAATTTAACCCATGGCTG 60.105 40.000 6.09 0.00 0.00 4.85
3611 10157 2.490903 CCATGGCTGGAGAAACAAAGAG 59.509 50.000 0.00 0.00 46.37 2.85
3779 10363 9.914834 AACATTCAAGCCTTACCTATGTATTAA 57.085 29.630 0.00 0.00 0.00 1.40
3796 10380 7.792374 TGTATTAAATCTGAATGAGACAGGC 57.208 36.000 0.00 0.00 36.22 4.85
3797 10381 7.568349 TGTATTAAATCTGAATGAGACAGGCT 58.432 34.615 0.00 0.00 36.22 4.58
3798 10382 8.049117 TGTATTAAATCTGAATGAGACAGGCTT 58.951 33.333 0.00 0.00 36.22 4.35
3799 10383 7.951347 ATTAAATCTGAATGAGACAGGCTTT 57.049 32.000 0.00 0.00 36.22 3.51
3800 10384 5.893897 AAATCTGAATGAGACAGGCTTTC 57.106 39.130 0.00 0.00 36.22 2.62
3801 10385 3.340814 TCTGAATGAGACAGGCTTTCC 57.659 47.619 0.00 0.00 36.22 3.13
3802 10386 2.005451 CTGAATGAGACAGGCTTTCCG 58.995 52.381 0.00 0.00 37.47 4.30
3803 10387 1.623311 TGAATGAGACAGGCTTTCCGA 59.377 47.619 0.00 0.00 37.47 4.55
3804 10388 2.038426 TGAATGAGACAGGCTTTCCGAA 59.962 45.455 0.00 0.00 37.47 4.30
3805 10389 2.859165 ATGAGACAGGCTTTCCGAAA 57.141 45.000 0.00 0.00 37.47 3.46
3806 10390 2.859165 TGAGACAGGCTTTCCGAAAT 57.141 45.000 0.00 0.00 37.47 2.17
3807 10391 3.140325 TGAGACAGGCTTTCCGAAATT 57.860 42.857 0.00 0.00 37.47 1.82
3808 10392 3.074412 TGAGACAGGCTTTCCGAAATTC 58.926 45.455 0.00 0.00 37.47 2.17
3809 10393 3.244561 TGAGACAGGCTTTCCGAAATTCT 60.245 43.478 0.00 0.00 37.47 2.40
3810 10394 3.077359 AGACAGGCTTTCCGAAATTCTG 58.923 45.455 16.02 16.02 37.47 3.02
3811 10395 1.541588 ACAGGCTTTCCGAAATTCTGC 59.458 47.619 16.90 8.24 37.47 4.26
3812 10396 1.541147 CAGGCTTTCCGAAATTCTGCA 59.459 47.619 9.32 0.00 37.47 4.41
3813 10397 1.815003 AGGCTTTCCGAAATTCTGCAG 59.185 47.619 7.63 7.63 37.47 4.41
3814 10398 1.622232 GCTTTCCGAAATTCTGCAGC 58.378 50.000 9.47 0.00 0.00 5.25
3815 10399 1.733718 GCTTTCCGAAATTCTGCAGCC 60.734 52.381 9.47 0.00 0.00 4.85
3816 10400 0.521291 TTTCCGAAATTCTGCAGCCG 59.479 50.000 9.47 7.04 0.00 5.52
3817 10401 0.605319 TTCCGAAATTCTGCAGCCGT 60.605 50.000 9.47 0.00 0.00 5.68
3818 10402 1.135315 CCGAAATTCTGCAGCCGTG 59.865 57.895 9.47 0.00 0.00 4.94
3819 10403 1.298157 CCGAAATTCTGCAGCCGTGA 61.298 55.000 9.47 0.00 0.00 4.35
3820 10404 0.729116 CGAAATTCTGCAGCCGTGAT 59.271 50.000 9.47 0.00 0.00 3.06
3821 10405 1.267732 CGAAATTCTGCAGCCGTGATC 60.268 52.381 9.47 1.60 0.00 2.92
3822 10406 2.012673 GAAATTCTGCAGCCGTGATCT 58.987 47.619 9.47 0.00 0.00 2.75
3823 10407 2.988010 AATTCTGCAGCCGTGATCTA 57.012 45.000 9.47 0.00 0.00 1.98
3824 10408 2.988010 ATTCTGCAGCCGTGATCTAA 57.012 45.000 9.47 0.00 0.00 2.10
3825 10409 2.010145 TTCTGCAGCCGTGATCTAAC 57.990 50.000 9.47 0.00 0.00 2.34
3826 10410 1.186200 TCTGCAGCCGTGATCTAACT 58.814 50.000 9.47 0.00 0.00 2.24
3827 10411 1.135139 TCTGCAGCCGTGATCTAACTC 59.865 52.381 9.47 0.00 0.00 3.01
3828 10412 0.894835 TGCAGCCGTGATCTAACTCA 59.105 50.000 0.00 0.00 0.00 3.41
3829 10413 1.281899 GCAGCCGTGATCTAACTCAC 58.718 55.000 0.00 0.00 41.73 3.51
3846 10430 5.407407 ACTCACGAGTTATGTCCAAATCT 57.593 39.130 0.00 0.00 38.83 2.40
3847 10431 6.525578 ACTCACGAGTTATGTCCAAATCTA 57.474 37.500 0.00 0.00 38.83 1.98
3848 10432 6.331061 ACTCACGAGTTATGTCCAAATCTAC 58.669 40.000 0.00 0.00 38.83 2.59
3849 10433 6.071560 ACTCACGAGTTATGTCCAAATCTACA 60.072 38.462 0.00 0.00 38.83 2.74
3850 10434 6.873997 TCACGAGTTATGTCCAAATCTACAT 58.126 36.000 0.00 0.00 39.56 2.29
3851 10435 8.002984 TCACGAGTTATGTCCAAATCTACATA 57.997 34.615 0.00 0.00 37.50 2.29
3852 10436 8.638873 TCACGAGTTATGTCCAAATCTACATAT 58.361 33.333 0.00 0.00 38.14 1.78
3853 10437 9.261180 CACGAGTTATGTCCAAATCTACATATT 57.739 33.333 0.00 0.00 38.14 1.28
3854 10438 9.477484 ACGAGTTATGTCCAAATCTACATATTC 57.523 33.333 0.00 0.00 38.14 1.75
3855 10439 9.476202 CGAGTTATGTCCAAATCTACATATTCA 57.524 33.333 0.00 0.00 38.14 2.57
3870 10454 9.778741 TCTACATATTCATTCATACCTTTGGAC 57.221 33.333 0.00 0.00 0.00 4.02
3871 10455 9.559732 CTACATATTCATTCATACCTTTGGACA 57.440 33.333 0.00 0.00 0.00 4.02
3872 10456 8.225603 ACATATTCATTCATACCTTTGGACAC 57.774 34.615 0.00 0.00 0.00 3.67
3873 10457 7.285401 ACATATTCATTCATACCTTTGGACACC 59.715 37.037 0.00 0.00 0.00 4.16
3874 10458 4.649267 TCATTCATACCTTTGGACACCA 57.351 40.909 0.00 0.00 0.00 4.17
3875 10459 4.331968 TCATTCATACCTTTGGACACCAC 58.668 43.478 0.00 0.00 30.78 4.16
3876 10460 4.042809 TCATTCATACCTTTGGACACCACT 59.957 41.667 0.00 0.00 30.78 4.00
3877 10461 4.447138 TTCATACCTTTGGACACCACTT 57.553 40.909 0.00 0.00 30.78 3.16
3878 10462 3.750371 TCATACCTTTGGACACCACTTG 58.250 45.455 0.00 0.00 30.78 3.16
3879 10463 2.649531 TACCTTTGGACACCACTTGG 57.350 50.000 0.00 0.00 42.17 3.61
3889 10473 3.039134 CCACTTGGTTGGTTCGCC 58.961 61.111 0.00 0.00 37.92 5.54
3898 10482 4.740922 TGGTTCGCCATTGATGCT 57.259 50.000 0.00 0.00 43.56 3.79
3899 10483 2.959967 TGGTTCGCCATTGATGCTT 58.040 47.368 0.00 0.00 43.56 3.91
3900 10484 0.527113 TGGTTCGCCATTGATGCTTG 59.473 50.000 0.00 0.00 43.56 4.01
3901 10485 0.803380 GGTTCGCCATTGATGCTTGC 60.803 55.000 0.00 0.00 37.19 4.01
3902 10486 0.803380 GTTCGCCATTGATGCTTGCC 60.803 55.000 0.00 0.00 0.00 4.52
3903 10487 2.268988 TTCGCCATTGATGCTTGCCG 62.269 55.000 0.00 0.00 0.00 5.69
3904 10488 2.887360 GCCATTGATGCTTGCCGT 59.113 55.556 0.00 0.00 0.00 5.68
3905 10489 1.216178 GCCATTGATGCTTGCCGTT 59.784 52.632 0.00 0.00 0.00 4.44
3906 10490 1.079875 GCCATTGATGCTTGCCGTTG 61.080 55.000 0.00 0.00 0.00 4.10
3907 10491 1.079875 CCATTGATGCTTGCCGTTGC 61.080 55.000 0.00 0.00 38.26 4.17
3908 10492 0.108992 CATTGATGCTTGCCGTTGCT 60.109 50.000 0.00 0.00 38.71 3.91
3909 10493 0.604578 ATTGATGCTTGCCGTTGCTT 59.395 45.000 0.00 0.00 38.71 3.91
3910 10494 0.039256 TTGATGCTTGCCGTTGCTTC 60.039 50.000 0.00 0.00 38.71 3.86
3911 10495 1.512734 GATGCTTGCCGTTGCTTCG 60.513 57.895 0.00 0.00 38.71 3.79
3912 10496 3.615536 ATGCTTGCCGTTGCTTCGC 62.616 57.895 0.00 0.00 38.71 4.70
3913 10497 4.326766 GCTTGCCGTTGCTTCGCA 62.327 61.111 0.00 0.00 38.71 5.10
3914 10498 2.562912 CTTGCCGTTGCTTCGCAT 59.437 55.556 0.00 0.00 38.76 4.73
3915 10499 1.081242 CTTGCCGTTGCTTCGCATT 60.081 52.632 0.00 0.00 38.76 3.56
3916 10500 1.339235 CTTGCCGTTGCTTCGCATTG 61.339 55.000 0.00 0.00 38.76 2.82
3917 10501 2.069465 TTGCCGTTGCTTCGCATTGT 62.069 50.000 0.00 0.00 38.76 2.71
3918 10502 1.371635 GCCGTTGCTTCGCATTGTT 60.372 52.632 0.00 0.00 38.76 2.83
3919 10503 1.608093 GCCGTTGCTTCGCATTGTTG 61.608 55.000 0.00 0.00 38.76 3.33
3920 10504 0.040514 CCGTTGCTTCGCATTGTTGA 60.041 50.000 0.00 0.00 38.76 3.18
3921 10505 1.599171 CCGTTGCTTCGCATTGTTGAA 60.599 47.619 0.00 0.00 38.76 2.69
3922 10506 2.318578 CGTTGCTTCGCATTGTTGAAT 58.681 42.857 0.00 0.00 38.76 2.57
3923 10507 3.487536 CGTTGCTTCGCATTGTTGAATA 58.512 40.909 0.00 0.00 38.76 1.75
3924 10508 3.911365 CGTTGCTTCGCATTGTTGAATAA 59.089 39.130 0.00 0.00 38.76 1.40
3925 10509 4.558470 CGTTGCTTCGCATTGTTGAATAAT 59.442 37.500 0.00 0.00 38.76 1.28
3926 10510 5.736824 CGTTGCTTCGCATTGTTGAATAATA 59.263 36.000 0.00 0.00 38.76 0.98
3927 10511 6.250315 CGTTGCTTCGCATTGTTGAATAATAA 59.750 34.615 0.00 0.00 38.76 1.40
3928 10512 7.201308 CGTTGCTTCGCATTGTTGAATAATAAA 60.201 33.333 0.00 0.00 38.76 1.40
3929 10513 8.594687 GTTGCTTCGCATTGTTGAATAATAAAT 58.405 29.630 0.00 0.00 38.76 1.40
3930 10514 9.794685 TTGCTTCGCATTGTTGAATAATAAATA 57.205 25.926 0.00 0.00 38.76 1.40
3931 10515 9.794685 TGCTTCGCATTGTTGAATAATAAATAA 57.205 25.926 0.00 0.00 31.71 1.40
3957 10541 7.893124 ACTTCTTCCGTTCCATACTATAAGA 57.107 36.000 0.00 0.00 0.00 2.10
3958 10542 7.942990 ACTTCTTCCGTTCCATACTATAAGAG 58.057 38.462 0.00 0.00 0.00 2.85
3959 10543 7.560626 ACTTCTTCCGTTCCATACTATAAGAGT 59.439 37.037 0.00 0.00 42.69 3.24
3960 10544 7.273320 TCTTCCGTTCCATACTATAAGAGTG 57.727 40.000 0.00 0.00 39.39 3.51
3961 10545 6.832384 TCTTCCGTTCCATACTATAAGAGTGT 59.168 38.462 0.00 0.00 39.39 3.55
3962 10546 6.630444 TCCGTTCCATACTATAAGAGTGTC 57.370 41.667 0.00 0.00 39.39 3.67
3963 10547 6.124340 TCCGTTCCATACTATAAGAGTGTCA 58.876 40.000 0.00 0.00 39.39 3.58
3964 10548 6.604396 TCCGTTCCATACTATAAGAGTGTCAA 59.396 38.462 0.00 0.00 39.39 3.18
3965 10549 6.918569 CCGTTCCATACTATAAGAGTGTCAAG 59.081 42.308 0.00 0.00 39.39 3.02
3966 10550 7.416438 CCGTTCCATACTATAAGAGTGTCAAGT 60.416 40.741 0.00 0.00 39.39 3.16
3967 10551 7.974501 CGTTCCATACTATAAGAGTGTCAAGTT 59.025 37.037 0.00 0.00 39.39 2.66
3968 10552 9.654663 GTTCCATACTATAAGAGTGTCAAGTTT 57.345 33.333 0.00 0.00 39.39 2.66
3985 10569 7.534085 TCAAGTTTTTGACACTACACTAGTG 57.466 36.000 21.44 21.44 45.31 2.74
4013 10597 9.245962 CAAAAACACTCTTATACTATAGGACGG 57.754 37.037 4.43 0.00 0.00 4.79
4014 10598 8.757982 AAAACACTCTTATACTATAGGACGGA 57.242 34.615 4.43 0.00 0.00 4.69
4015 10599 7.982761 AACACTCTTATACTATAGGACGGAG 57.017 40.000 4.43 6.87 0.00 4.63
4016 10600 6.474630 ACACTCTTATACTATAGGACGGAGG 58.525 44.000 4.43 2.42 0.00 4.30
4017 10601 5.881443 CACTCTTATACTATAGGACGGAGGG 59.119 48.000 4.43 2.01 0.00 4.30
4018 10602 5.789575 ACTCTTATACTATAGGACGGAGGGA 59.210 44.000 4.43 0.00 0.00 4.20
4019 10603 6.070078 ACTCTTATACTATAGGACGGAGGGAG 60.070 46.154 4.43 4.23 0.00 4.30
4020 10604 5.789575 TCTTATACTATAGGACGGAGGGAGT 59.210 44.000 4.43 0.00 0.00 3.85
4021 10605 6.962311 TCTTATACTATAGGACGGAGGGAGTA 59.038 42.308 4.43 0.00 0.00 2.59
4022 10606 3.786368 ACTATAGGACGGAGGGAGTAC 57.214 52.381 4.43 0.00 0.00 2.73
4023 10607 3.325605 ACTATAGGACGGAGGGAGTACT 58.674 50.000 4.43 0.00 36.60 2.73
4024 10608 4.497516 ACTATAGGACGGAGGGAGTACTA 58.502 47.826 4.43 0.00 39.16 1.82
4025 10609 5.100094 ACTATAGGACGGAGGGAGTACTAT 58.900 45.833 4.43 6.38 45.10 2.12
4026 10610 6.267635 ACTATAGGACGGAGGGAGTACTATA 58.732 44.000 4.43 7.75 42.29 1.31
4027 10611 6.908029 ACTATAGGACGGAGGGAGTACTATAT 59.092 42.308 4.43 0.00 43.30 0.86
4028 10612 8.070604 ACTATAGGACGGAGGGAGTACTATATA 58.929 40.741 4.43 0.00 43.30 0.86
4029 10613 7.761981 ATAGGACGGAGGGAGTACTATATAA 57.238 40.000 0.00 0.00 42.29 0.98
4030 10614 6.655376 AGGACGGAGGGAGTACTATATAAT 57.345 41.667 0.00 0.00 29.47 1.28
4031 10615 7.042106 AGGACGGAGGGAGTACTATATAATT 57.958 40.000 0.00 0.00 29.47 1.40
4032 10616 6.890814 AGGACGGAGGGAGTACTATATAATTG 59.109 42.308 0.00 0.00 29.47 2.32
4033 10617 6.662663 GGACGGAGGGAGTACTATATAATTGT 59.337 42.308 0.00 0.00 0.00 2.71
4034 10618 7.831193 GGACGGAGGGAGTACTATATAATTGTA 59.169 40.741 0.00 0.00 0.00 2.41
4035 10619 9.406113 GACGGAGGGAGTACTATATAATTGTAT 57.594 37.037 0.00 0.12 0.00 2.29
4036 10620 9.186837 ACGGAGGGAGTACTATATAATTGTATG 57.813 37.037 5.06 0.00 0.00 2.39
4037 10621 8.136165 CGGAGGGAGTACTATATAATTGTATGC 58.864 40.741 5.06 0.00 0.00 3.14
4038 10622 8.978472 GGAGGGAGTACTATATAATTGTATGCA 58.022 37.037 5.06 0.00 0.00 3.96
4039 10623 9.804758 GAGGGAGTACTATATAATTGTATGCAC 57.195 37.037 5.06 1.16 0.00 4.57
4040 10624 9.548631 AGGGAGTACTATATAATTGTATGCACT 57.451 33.333 5.06 5.30 0.00 4.40
4041 10625 9.587772 GGGAGTACTATATAATTGTATGCACTG 57.412 37.037 5.06 0.00 0.00 3.66
4050 10634 9.850628 ATATAATTGTATGCACTGATTTGATGC 57.149 29.630 0.00 0.00 39.88 3.91
4055 10639 2.679450 TGCACTGATTTGATGCAAAGC 58.321 42.857 0.00 1.56 45.96 3.51
4056 10640 1.997606 GCACTGATTTGATGCAAAGCC 59.002 47.619 5.80 0.00 38.73 4.35
4057 10641 2.613691 CACTGATTTGATGCAAAGCCC 58.386 47.619 5.80 0.00 38.73 5.19
4058 10642 1.203052 ACTGATTTGATGCAAAGCCCG 59.797 47.619 5.80 0.78 38.73 6.13
4059 10643 0.531657 TGATTTGATGCAAAGCCCGG 59.468 50.000 0.00 0.00 38.73 5.73
4060 10644 0.179103 GATTTGATGCAAAGCCCGGG 60.179 55.000 19.09 19.09 36.76 5.73
4061 10645 1.616091 ATTTGATGCAAAGCCCGGGG 61.616 55.000 25.28 9.31 36.76 5.73
4062 10646 4.757355 TGATGCAAAGCCCGGGGG 62.757 66.667 25.28 2.24 38.57 5.40
4063 10647 4.759205 GATGCAAAGCCCGGGGGT 62.759 66.667 25.28 13.12 37.65 4.95
4064 10648 4.315264 ATGCAAAGCCCGGGGGTT 62.315 61.111 24.44 24.44 46.01 4.11
4065 10649 2.847366 GATGCAAAGCCCGGGGGTTA 62.847 60.000 29.41 15.64 43.04 2.85
4066 10650 2.283316 GCAAAGCCCGGGGGTTAA 60.283 61.111 29.41 0.00 43.04 2.01
4067 10651 1.684391 GCAAAGCCCGGGGGTTAAT 60.684 57.895 29.41 13.49 43.04 1.40
4068 10652 1.672854 GCAAAGCCCGGGGGTTAATC 61.673 60.000 29.41 17.32 43.04 1.75
4069 10653 1.040893 CAAAGCCCGGGGGTTAATCC 61.041 60.000 29.41 1.76 43.04 3.01
4070 10654 1.219131 AAAGCCCGGGGGTTAATCCT 61.219 55.000 29.41 11.97 43.04 3.24
4071 10655 1.642513 AAGCCCGGGGGTTAATCCTC 61.643 60.000 28.28 0.00 41.96 3.71
4078 10662 2.343484 GGGGTTAATCCTCCTTTCCG 57.657 55.000 4.37 0.00 36.25 4.30
4079 10663 1.841919 GGGGTTAATCCTCCTTTCCGA 59.158 52.381 4.37 0.00 36.25 4.55
4080 10664 2.240414 GGGGTTAATCCTCCTTTCCGAA 59.760 50.000 4.37 0.00 36.25 4.30
4081 10665 3.308617 GGGGTTAATCCTCCTTTCCGAAA 60.309 47.826 4.37 0.00 36.25 3.46
4082 10666 4.338012 GGGTTAATCCTCCTTTCCGAAAA 58.662 43.478 0.00 0.00 36.25 2.29
4083 10667 4.768448 GGGTTAATCCTCCTTTCCGAAAAA 59.232 41.667 0.00 0.00 36.25 1.94
4084 10668 5.105877 GGGTTAATCCTCCTTTCCGAAAAAG 60.106 44.000 0.00 3.94 36.25 2.27
4085 10669 5.708697 GGTTAATCCTCCTTTCCGAAAAAGA 59.291 40.000 10.67 0.00 0.00 2.52
4086 10670 6.208007 GGTTAATCCTCCTTTCCGAAAAAGAA 59.792 38.462 10.67 0.00 0.00 2.52
4087 10671 7.255695 GGTTAATCCTCCTTTCCGAAAAAGAAA 60.256 37.037 10.67 0.00 0.00 2.52
4088 10672 5.707242 ATCCTCCTTTCCGAAAAAGAAAC 57.293 39.130 10.67 0.00 0.00 2.78
4089 10673 4.528920 TCCTCCTTTCCGAAAAAGAAACA 58.471 39.130 10.67 0.00 0.00 2.83
4090 10674 4.951094 TCCTCCTTTCCGAAAAAGAAACAA 59.049 37.500 10.67 0.00 0.00 2.83
4091 10675 5.419471 TCCTCCTTTCCGAAAAAGAAACAAA 59.581 36.000 10.67 0.00 0.00 2.83
4092 10676 6.071278 TCCTCCTTTCCGAAAAAGAAACAAAA 60.071 34.615 10.67 0.00 0.00 2.44
4093 10677 6.592220 CCTCCTTTCCGAAAAAGAAACAAAAA 59.408 34.615 10.67 0.00 0.00 1.94
4094 10678 7.279981 CCTCCTTTCCGAAAAAGAAACAAAAAT 59.720 33.333 10.67 0.00 0.00 1.82
4095 10679 9.308318 CTCCTTTCCGAAAAAGAAACAAAAATA 57.692 29.630 10.67 0.00 0.00 1.40
4096 10680 9.825109 TCCTTTCCGAAAAAGAAACAAAAATAT 57.175 25.926 10.67 0.00 0.00 1.28
4097 10681 9.862585 CCTTTCCGAAAAAGAAACAAAAATATG 57.137 29.630 10.67 0.00 0.00 1.78
4098 10682 9.862585 CTTTCCGAAAAAGAAACAAAAATATGG 57.137 29.630 4.74 0.00 0.00 2.74
4099 10683 9.601217 TTTCCGAAAAAGAAACAAAAATATGGA 57.399 25.926 0.00 0.00 0.00 3.41
4100 10684 9.601217 TTCCGAAAAAGAAACAAAAATATGGAA 57.399 25.926 0.00 0.00 0.00 3.53
4101 10685 9.601217 TCCGAAAAAGAAACAAAAATATGGAAA 57.399 25.926 0.00 0.00 0.00 3.13
4111 10695 9.679661 AAACAAAAATATGGAAAAAGGTTCTGT 57.320 25.926 0.00 0.00 0.00 3.41
4115 10699 9.435688 AAAAATATGGAAAAAGGTTCTGTATGC 57.564 29.630 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.569701 ACAAAAAGGCATGTTGATCGACT 59.430 39.130 14.27 0.00 0.00 4.18
3 4 3.900941 ACAAAAAGGCATGTTGATCGAC 58.099 40.909 6.11 6.11 0.00 4.20
4 5 3.820467 AGACAAAAAGGCATGTTGATCGA 59.180 39.130 0.00 0.00 0.00 3.59
5 6 4.164822 AGACAAAAAGGCATGTTGATCG 57.835 40.909 0.00 0.00 0.00 3.69
54 4816 1.754226 GAAAGTTCAGGCCACCACAAA 59.246 47.619 5.01 0.00 0.00 2.83
56 4818 0.257328 TGAAAGTTCAGGCCACCACA 59.743 50.000 5.01 0.00 32.50 4.17
90 4852 5.810587 GCGTTCATAATCTGTTCTTACCTCA 59.189 40.000 0.00 0.00 0.00 3.86
189 4994 7.885922 TGCTAATATGAAAACAAGACCAGGTTA 59.114 33.333 0.00 0.00 0.00 2.85
284 5183 7.601886 TGTGATTTCCAAATACGCATGAATTTT 59.398 29.630 0.00 0.00 0.00 1.82
328 5283 5.114780 TAAGAATGCTTTTGCTTTTGCACA 58.885 33.333 0.00 0.00 44.43 4.57
395 5461 7.672122 AATATTTAGAAACGGAGGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
396 5462 7.767659 ACAAATATTTAGAAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
397 5463 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
398 5464 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
399 5465 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
400 5466 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
401 5467 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
402 5468 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
480 5546 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
481 5547 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
482 5548 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
487 5553 9.494271 GACTATATATGGAGCAAAATGAGTGAA 57.506 33.333 2.68 0.00 0.00 3.18
488 5554 8.650490 TGACTATATATGGAGCAAAATGAGTGA 58.350 33.333 2.68 0.00 0.00 3.41
489 5555 8.837788 TGACTATATATGGAGCAAAATGAGTG 57.162 34.615 2.68 0.00 0.00 3.51
496 5562 9.625747 TCAACAAATGACTATATATGGAGCAAA 57.374 29.630 2.68 0.00 31.50 3.68
497 5563 9.625747 TTCAACAAATGACTATATATGGAGCAA 57.374 29.630 2.68 0.00 37.92 3.91
498 5564 9.625747 TTTCAACAAATGACTATATATGGAGCA 57.374 29.630 2.68 1.50 37.92 4.26
528 5594 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
529 5595 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
530 5596 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
531 5597 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
532 5598 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
533 5599 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
534 5600 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
535 5601 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
536 5602 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
537 5603 7.767198 TGTACTTCCTCCGTTCCTAAATATTTG 59.233 37.037 11.05 1.40 0.00 2.32
538 5604 7.854337 TGTACTTCCTCCGTTCCTAAATATTT 58.146 34.615 5.89 5.89 0.00 1.40
539 5605 7.427989 TGTACTTCCTCCGTTCCTAAATATT 57.572 36.000 0.00 0.00 0.00 1.28
540 5606 7.070821 ACATGTACTTCCTCCGTTCCTAAATAT 59.929 37.037 0.00 0.00 0.00 1.28
541 5607 6.381994 ACATGTACTTCCTCCGTTCCTAAATA 59.618 38.462 0.00 0.00 0.00 1.40
542 5608 5.189145 ACATGTACTTCCTCCGTTCCTAAAT 59.811 40.000 0.00 0.00 0.00 1.40
543 5609 4.529377 ACATGTACTTCCTCCGTTCCTAAA 59.471 41.667 0.00 0.00 0.00 1.85
544 5610 4.091549 ACATGTACTTCCTCCGTTCCTAA 58.908 43.478 0.00 0.00 0.00 2.69
545 5611 3.698040 GACATGTACTTCCTCCGTTCCTA 59.302 47.826 0.00 0.00 0.00 2.94
546 5612 2.496470 GACATGTACTTCCTCCGTTCCT 59.504 50.000 0.00 0.00 0.00 3.36
547 5613 2.232941 TGACATGTACTTCCTCCGTTCC 59.767 50.000 0.00 0.00 0.00 3.62
548 5614 3.587797 TGACATGTACTTCCTCCGTTC 57.412 47.619 0.00 0.00 0.00 3.95
549 5615 3.369471 CCATGACATGTACTTCCTCCGTT 60.369 47.826 14.26 0.00 0.00 4.44
550 5616 2.168521 CCATGACATGTACTTCCTCCGT 59.831 50.000 14.26 0.00 0.00 4.69
551 5617 2.168521 ACCATGACATGTACTTCCTCCG 59.831 50.000 14.26 0.00 0.00 4.63
552 5618 3.055094 ACACCATGACATGTACTTCCTCC 60.055 47.826 14.26 0.00 0.00 4.30
553 5619 3.935203 CACACCATGACATGTACTTCCTC 59.065 47.826 14.26 0.00 0.00 3.71
554 5620 3.869912 GCACACCATGACATGTACTTCCT 60.870 47.826 14.26 0.00 0.00 3.36
555 5621 2.420022 GCACACCATGACATGTACTTCC 59.580 50.000 14.26 0.00 0.00 3.46
556 5622 3.125829 CAGCACACCATGACATGTACTTC 59.874 47.826 14.26 1.21 0.00 3.01
557 5623 3.076621 CAGCACACCATGACATGTACTT 58.923 45.455 14.26 0.00 0.00 2.24
558 5624 2.302733 TCAGCACACCATGACATGTACT 59.697 45.455 14.26 1.64 0.00 2.73
559 5625 2.416547 GTCAGCACACCATGACATGTAC 59.583 50.000 14.26 0.00 44.21 2.90
560 5626 2.302733 AGTCAGCACACCATGACATGTA 59.697 45.455 14.26 0.00 46.63 2.29
561 5627 1.072806 AGTCAGCACACCATGACATGT 59.927 47.619 14.26 0.00 46.63 3.21
584 5650 7.038154 TCAAAGGTTAGGCATATATGTTTGC 57.962 36.000 14.14 1.01 38.14 3.68
732 5865 4.772100 TCTTTCAAATGGGATCCAGGAAAC 59.228 41.667 15.23 0.00 36.75 2.78
794 5927 2.439156 GGGCTGTGGCTGATCACC 60.439 66.667 0.00 0.00 36.87 4.02
796 5929 2.352422 GTGGGCTGTGGCTGATCA 59.648 61.111 0.00 0.00 38.73 2.92
1198 6354 4.913126 GGAGTACCAACGCCTCTG 57.087 61.111 0.00 0.00 41.97 3.35
1717 6906 4.298744 TGATCACAGATAGTTCTCGCTG 57.701 45.455 0.00 0.00 34.65 5.18
1802 7024 0.541063 TCTAGGCTTCACCACGGACA 60.541 55.000 0.00 0.00 43.14 4.02
1837 7059 3.775654 GCCGGGACCAGTCTCCAG 61.776 72.222 2.18 0.00 30.97 3.86
2117 8553 6.152932 ACTTCAAGTGCATGTCTGAAAAAT 57.847 33.333 0.00 0.00 0.00 1.82
2179 8620 7.840342 ACAATCTAAGCTAGAATCACAAGTG 57.160 36.000 0.00 0.00 38.50 3.16
2180 8621 8.097038 TCAACAATCTAAGCTAGAATCACAAGT 58.903 33.333 0.00 0.00 38.50 3.16
2187 8628 9.250624 GACGTATTCAACAATCTAAGCTAGAAT 57.749 33.333 0.00 0.00 38.50 2.40
2283 8724 5.146010 TCAAACAGAAAACCAAGCAAAGT 57.854 34.783 0.00 0.00 0.00 2.66
2341 8782 1.791204 TCGTCGCGAGTATGTAGCTAG 59.209 52.381 10.24 0.00 0.00 3.42
2343 8784 2.686602 TCGTCGCGAGTATGTAGCT 58.313 52.632 10.24 0.00 0.00 3.32
2353 8794 4.435436 ATGCCTTGCTCGTCGCGA 62.435 61.111 3.71 3.71 43.27 5.87
2354 8795 4.214383 CATGCCTTGCTCGTCGCG 62.214 66.667 0.00 0.00 43.27 5.87
2355 8796 2.680913 AACATGCCTTGCTCGTCGC 61.681 57.895 0.00 0.00 39.77 5.19
2356 8797 1.133253 CAACATGCCTTGCTCGTCG 59.867 57.895 0.00 0.00 0.00 5.12
2357 8798 1.503542 CCAACATGCCTTGCTCGTC 59.496 57.895 0.00 0.00 0.00 4.20
2391 8833 3.131396 CGCGCCACTAGAATAGGAAAAT 58.869 45.455 0.00 0.00 44.97 1.82
2434 8876 6.156519 GTCACAGGAAAACACAAAGAAAGTT 58.843 36.000 0.00 0.00 0.00 2.66
2449 8891 2.104111 AGACCGTGATTTGTCACAGGAA 59.896 45.455 18.93 0.00 40.42 3.36
2452 8894 1.800586 CCAGACCGTGATTTGTCACAG 59.199 52.381 9.00 0.40 40.42 3.66
2471 8913 6.947464 AGCATAACATATACATGGTCTACCC 58.053 40.000 0.00 0.00 36.39 3.69
2504 8946 9.793259 CTAGCTATGGGTAAAATTTGAATCCTA 57.207 33.333 0.00 0.00 0.00 2.94
2518 8960 7.490657 TTCTTTGTTTCTCTAGCTATGGGTA 57.509 36.000 0.00 0.00 0.00 3.69
2756 9198 1.635487 TCTAGCCTGCAAATCCCTGTT 59.365 47.619 0.00 0.00 0.00 3.16
2810 9252 5.716228 TGTTAGATGATGGCTGGACAATTTT 59.284 36.000 0.00 0.00 0.00 1.82
2826 9268 9.445786 ACTTCAACGTAATTTGTTTGTTAGATG 57.554 29.630 0.00 0.00 0.00 2.90
2931 9381 7.414222 AGCATGACAATAAAAATCTCATGGT 57.586 32.000 0.00 5.12 42.42 3.55
3017 9467 8.658619 AGAGACAAGGCTTCATAAGATGATATT 58.341 33.333 0.00 0.00 39.39 1.28
3188 9641 2.094286 CCAACACAACCAGCAACAGAAA 60.094 45.455 0.00 0.00 0.00 2.52
3229 9682 3.740590 CACAGAATAGAGCAAAAGCGTG 58.259 45.455 0.00 0.00 0.00 5.34
3230 9683 2.160417 GCACAGAATAGAGCAAAAGCGT 59.840 45.455 0.00 0.00 0.00 5.07
3258 9711 6.591750 TCCAAAACAACCAACTTAGTTTCA 57.408 33.333 0.00 0.00 33.45 2.69
3277 9730 4.277174 GTCCAACACAATACACACATCCAA 59.723 41.667 0.00 0.00 0.00 3.53
3318 9806 1.630126 CCACCTCCCCTGTCCATCAG 61.630 65.000 0.00 0.00 43.27 2.90
3319 9807 1.616327 CCACCTCCCCTGTCCATCA 60.616 63.158 0.00 0.00 0.00 3.07
3320 9808 1.616628 ACCACCTCCCCTGTCCATC 60.617 63.158 0.00 0.00 0.00 3.51
3321 9809 1.925455 CACCACCTCCCCTGTCCAT 60.925 63.158 0.00 0.00 0.00 3.41
3322 9810 2.529136 CACCACCTCCCCTGTCCA 60.529 66.667 0.00 0.00 0.00 4.02
3323 9811 2.125766 GAACACCACCTCCCCTGTCC 62.126 65.000 0.00 0.00 0.00 4.02
3324 9812 1.375326 GAACACCACCTCCCCTGTC 59.625 63.158 0.00 0.00 0.00 3.51
3325 9813 1.385347 TGAACACCACCTCCCCTGT 60.385 57.895 0.00 0.00 0.00 4.00
3326 9814 1.127567 TCTGAACACCACCTCCCCTG 61.128 60.000 0.00 0.00 0.00 4.45
3327 9815 0.401395 TTCTGAACACCACCTCCCCT 60.401 55.000 0.00 0.00 0.00 4.79
3328 9816 0.476771 TTTCTGAACACCACCTCCCC 59.523 55.000 0.00 0.00 0.00 4.81
3329 9817 1.420138 TCTTTCTGAACACCACCTCCC 59.580 52.381 0.00 0.00 0.00 4.30
3330 9818 2.930826 TCTTTCTGAACACCACCTCC 57.069 50.000 0.00 0.00 0.00 4.30
3331 9819 5.412904 CCTTTATCTTTCTGAACACCACCTC 59.587 44.000 0.00 0.00 0.00 3.85
3332 9820 5.073144 TCCTTTATCTTTCTGAACACCACCT 59.927 40.000 0.00 0.00 0.00 4.00
3333 9821 5.313712 TCCTTTATCTTTCTGAACACCACC 58.686 41.667 0.00 0.00 0.00 4.61
3334 9822 6.262273 TGTTCCTTTATCTTTCTGAACACCAC 59.738 38.462 0.00 0.00 37.69 4.16
3335 9823 6.361433 TGTTCCTTTATCTTTCTGAACACCA 58.639 36.000 0.00 0.00 37.69 4.17
3336 9824 6.486993 ACTGTTCCTTTATCTTTCTGAACACC 59.513 38.462 0.00 0.00 37.69 4.16
3337 9825 7.497925 ACTGTTCCTTTATCTTTCTGAACAC 57.502 36.000 0.00 0.00 37.69 3.32
3338 9826 6.423905 CGACTGTTCCTTTATCTTTCTGAACA 59.576 38.462 0.00 0.00 39.59 3.18
3339 9827 6.645415 TCGACTGTTCCTTTATCTTTCTGAAC 59.355 38.462 0.00 0.00 34.25 3.18
3340 9828 6.755206 TCGACTGTTCCTTTATCTTTCTGAA 58.245 36.000 0.00 0.00 0.00 3.02
3341 9829 6.340962 TCGACTGTTCCTTTATCTTTCTGA 57.659 37.500 0.00 0.00 0.00 3.27
3342 9830 5.578727 CCTCGACTGTTCCTTTATCTTTCTG 59.421 44.000 0.00 0.00 0.00 3.02
3343 9831 5.480772 TCCTCGACTGTTCCTTTATCTTTCT 59.519 40.000 0.00 0.00 0.00 2.52
3344 9832 5.721232 TCCTCGACTGTTCCTTTATCTTTC 58.279 41.667 0.00 0.00 0.00 2.62
3345 9833 5.740290 TCCTCGACTGTTCCTTTATCTTT 57.260 39.130 0.00 0.00 0.00 2.52
3346 9834 5.480205 GTTCCTCGACTGTTCCTTTATCTT 58.520 41.667 0.00 0.00 0.00 2.40
3347 9835 4.380655 CGTTCCTCGACTGTTCCTTTATCT 60.381 45.833 0.00 0.00 42.86 1.98
3348 9836 3.858238 CGTTCCTCGACTGTTCCTTTATC 59.142 47.826 0.00 0.00 42.86 1.75
3349 9837 3.368116 CCGTTCCTCGACTGTTCCTTTAT 60.368 47.826 0.00 0.00 42.86 1.40
3350 9838 2.029649 CCGTTCCTCGACTGTTCCTTTA 60.030 50.000 0.00 0.00 42.86 1.85
3351 9839 1.270147 CCGTTCCTCGACTGTTCCTTT 60.270 52.381 0.00 0.00 42.86 3.11
3472 9960 7.765695 ATTAGAACAACACCATTGAGAATGT 57.234 32.000 0.00 0.00 37.18 2.71
3480 9968 8.664669 AATAGGGAAATTAGAACAACACCATT 57.335 30.769 0.00 0.00 0.00 3.16
3565 10053 8.257306 GGGTTAAATTTGAATCCTGAATTAGCA 58.743 33.333 0.00 0.00 0.00 3.49
3566 10054 8.257306 TGGGTTAAATTTGAATCCTGAATTAGC 58.743 33.333 0.00 0.00 0.00 3.09
3598 10144 3.942115 GAGTATGCCCTCTTTGTTTCTCC 59.058 47.826 0.00 0.00 0.00 3.71
3611 10157 1.201414 CAACCAAAACCGAGTATGCCC 59.799 52.381 0.00 0.00 0.00 5.36
3779 10363 4.268359 GGAAAGCCTGTCTCATTCAGATT 58.732 43.478 0.00 0.00 35.20 2.40
3796 10380 1.466360 CGGCTGCAGAATTTCGGAAAG 60.466 52.381 20.43 0.00 0.00 2.62
3797 10381 0.521291 CGGCTGCAGAATTTCGGAAA 59.479 50.000 20.43 5.52 0.00 3.13
3798 10382 0.605319 ACGGCTGCAGAATTTCGGAA 60.605 50.000 20.43 0.00 0.00 4.30
3799 10383 1.003839 ACGGCTGCAGAATTTCGGA 60.004 52.632 20.43 0.00 0.00 4.55
3800 10384 1.135315 CACGGCTGCAGAATTTCGG 59.865 57.895 20.43 6.09 0.00 4.30
3801 10385 0.729116 ATCACGGCTGCAGAATTTCG 59.271 50.000 20.43 14.16 0.00 3.46
3802 10386 2.012673 AGATCACGGCTGCAGAATTTC 58.987 47.619 20.43 5.83 0.00 2.17
3803 10387 2.119801 AGATCACGGCTGCAGAATTT 57.880 45.000 20.43 0.00 0.00 1.82
3804 10388 2.939103 GTTAGATCACGGCTGCAGAATT 59.061 45.455 20.43 0.00 0.00 2.17
3805 10389 2.169352 AGTTAGATCACGGCTGCAGAAT 59.831 45.455 20.43 1.61 0.00 2.40
3806 10390 1.550524 AGTTAGATCACGGCTGCAGAA 59.449 47.619 20.43 0.00 0.00 3.02
3807 10391 1.135139 GAGTTAGATCACGGCTGCAGA 59.865 52.381 20.43 0.00 0.00 4.26
3808 10392 1.134995 TGAGTTAGATCACGGCTGCAG 60.135 52.381 10.11 10.11 0.00 4.41
3809 10393 0.894835 TGAGTTAGATCACGGCTGCA 59.105 50.000 0.50 0.00 0.00 4.41
3810 10394 1.281899 GTGAGTTAGATCACGGCTGC 58.718 55.000 0.00 0.00 40.18 5.25
3824 10408 5.407407 AGATTTGGACATAACTCGTGAGT 57.593 39.130 0.00 0.00 44.94 3.41
3825 10409 6.330278 TGTAGATTTGGACATAACTCGTGAG 58.670 40.000 0.00 0.00 0.00 3.51
3826 10410 6.275494 TGTAGATTTGGACATAACTCGTGA 57.725 37.500 0.00 0.00 0.00 4.35
3827 10411 8.818141 ATATGTAGATTTGGACATAACTCGTG 57.182 34.615 0.00 0.00 40.83 4.35
3828 10412 9.477484 GAATATGTAGATTTGGACATAACTCGT 57.523 33.333 0.00 0.00 40.83 4.18
3829 10413 9.476202 TGAATATGTAGATTTGGACATAACTCG 57.524 33.333 0.00 0.00 40.83 4.18
3844 10428 9.778741 GTCCAAAGGTATGAATGAATATGTAGA 57.221 33.333 0.00 0.00 0.00 2.59
3845 10429 9.559732 TGTCCAAAGGTATGAATGAATATGTAG 57.440 33.333 0.00 0.00 0.00 2.74
3846 10430 9.337396 GTGTCCAAAGGTATGAATGAATATGTA 57.663 33.333 0.00 0.00 0.00 2.29
3847 10431 7.285401 GGTGTCCAAAGGTATGAATGAATATGT 59.715 37.037 0.00 0.00 0.00 2.29
3848 10432 7.285172 TGGTGTCCAAAGGTATGAATGAATATG 59.715 37.037 0.00 0.00 0.00 1.78
3849 10433 7.285401 GTGGTGTCCAAAGGTATGAATGAATAT 59.715 37.037 0.00 0.00 34.18 1.28
3850 10434 6.601613 GTGGTGTCCAAAGGTATGAATGAATA 59.398 38.462 0.00 0.00 34.18 1.75
3851 10435 5.418840 GTGGTGTCCAAAGGTATGAATGAAT 59.581 40.000 0.00 0.00 34.18 2.57
3852 10436 4.764823 GTGGTGTCCAAAGGTATGAATGAA 59.235 41.667 0.00 0.00 34.18 2.57
3853 10437 4.042809 AGTGGTGTCCAAAGGTATGAATGA 59.957 41.667 0.00 0.00 34.18 2.57
3854 10438 4.335416 AGTGGTGTCCAAAGGTATGAATG 58.665 43.478 0.00 0.00 34.18 2.67
3855 10439 4.657814 AGTGGTGTCCAAAGGTATGAAT 57.342 40.909 0.00 0.00 34.18 2.57
3856 10440 4.141287 CAAGTGGTGTCCAAAGGTATGAA 58.859 43.478 0.00 0.00 34.18 2.57
3857 10441 3.497763 CCAAGTGGTGTCCAAAGGTATGA 60.498 47.826 0.00 0.00 34.18 2.15
3858 10442 2.819608 CCAAGTGGTGTCCAAAGGTATG 59.180 50.000 0.00 0.00 34.18 2.39
3859 10443 3.154827 CCAAGTGGTGTCCAAAGGTAT 57.845 47.619 0.00 0.00 34.18 2.73
3860 10444 2.649531 CCAAGTGGTGTCCAAAGGTA 57.350 50.000 0.00 0.00 34.18 3.08
3861 10445 3.513209 CCAAGTGGTGTCCAAAGGT 57.487 52.632 0.00 0.00 34.18 3.50
3872 10456 1.826054 TGGCGAACCAACCAAGTGG 60.826 57.895 0.00 0.00 45.37 4.00
3873 10457 3.834726 TGGCGAACCAACCAAGTG 58.165 55.556 0.00 0.00 45.37 3.16
3882 10466 0.803380 GCAAGCATCAATGGCGAACC 60.803 55.000 0.00 0.00 36.08 3.62
3883 10467 0.803380 GGCAAGCATCAATGGCGAAC 60.803 55.000 0.00 0.00 36.08 3.95
3884 10468 1.512230 GGCAAGCATCAATGGCGAA 59.488 52.632 0.00 0.00 36.08 4.70
3885 10469 3.199551 GGCAAGCATCAATGGCGA 58.800 55.556 0.00 0.00 36.08 5.54
3887 10471 1.079875 CAACGGCAAGCATCAATGGC 61.080 55.000 0.00 0.00 38.62 4.40
3888 10472 1.079875 GCAACGGCAAGCATCAATGG 61.080 55.000 0.00 0.00 40.72 3.16
3889 10473 0.108992 AGCAACGGCAAGCATCAATG 60.109 50.000 0.00 0.00 44.61 2.82
3890 10474 0.604578 AAGCAACGGCAAGCATCAAT 59.395 45.000 0.00 0.00 44.61 2.57
3891 10475 0.039256 GAAGCAACGGCAAGCATCAA 60.039 50.000 0.00 0.00 44.61 2.57
3892 10476 1.580942 GAAGCAACGGCAAGCATCA 59.419 52.632 0.00 0.00 44.61 3.07
3893 10477 1.512734 CGAAGCAACGGCAAGCATC 60.513 57.895 0.00 0.00 44.61 3.91
3894 10478 2.562912 CGAAGCAACGGCAAGCAT 59.437 55.556 0.00 0.00 44.61 3.79
3931 10515 9.584008 TCTTATAGTATGGAACGGAAGAAGTAT 57.416 33.333 0.00 0.00 0.00 2.12
3932 10516 8.985315 TCTTATAGTATGGAACGGAAGAAGTA 57.015 34.615 0.00 0.00 0.00 2.24
3933 10517 7.560626 ACTCTTATAGTATGGAACGGAAGAAGT 59.439 37.037 0.00 0.00 36.36 3.01
3934 10518 7.863375 CACTCTTATAGTATGGAACGGAAGAAG 59.137 40.741 0.00 0.00 35.76 2.85
3935 10519 7.341256 ACACTCTTATAGTATGGAACGGAAGAA 59.659 37.037 0.00 0.00 35.76 2.52
3936 10520 6.832384 ACACTCTTATAGTATGGAACGGAAGA 59.168 38.462 0.00 0.00 35.76 2.87
3937 10521 7.040473 ACACTCTTATAGTATGGAACGGAAG 57.960 40.000 0.00 0.00 35.76 3.46
3938 10522 6.604396 TGACACTCTTATAGTATGGAACGGAA 59.396 38.462 0.00 0.00 35.76 4.30
3939 10523 6.124340 TGACACTCTTATAGTATGGAACGGA 58.876 40.000 0.00 0.00 35.76 4.69
3940 10524 6.387041 TGACACTCTTATAGTATGGAACGG 57.613 41.667 0.00 0.00 35.76 4.44
3941 10525 7.481642 ACTTGACACTCTTATAGTATGGAACG 58.518 38.462 0.00 0.00 35.76 3.95
3942 10526 9.654663 AAACTTGACACTCTTATAGTATGGAAC 57.345 33.333 0.00 0.00 35.76 3.62
3987 10571 9.245962 CCGTCCTATAGTATAAGAGTGTTTTTG 57.754 37.037 0.00 0.00 0.00 2.44
3988 10572 9.193806 TCCGTCCTATAGTATAAGAGTGTTTTT 57.806 33.333 0.00 0.00 0.00 1.94
3989 10573 8.757982 TCCGTCCTATAGTATAAGAGTGTTTT 57.242 34.615 0.00 0.00 0.00 2.43
3990 10574 7.447853 CCTCCGTCCTATAGTATAAGAGTGTTT 59.552 40.741 0.00 0.00 0.00 2.83
3991 10575 6.941436 CCTCCGTCCTATAGTATAAGAGTGTT 59.059 42.308 0.00 0.00 0.00 3.32
3992 10576 6.474630 CCTCCGTCCTATAGTATAAGAGTGT 58.525 44.000 0.00 0.00 0.00 3.55
3993 10577 5.881443 CCCTCCGTCCTATAGTATAAGAGTG 59.119 48.000 0.00 0.00 0.00 3.51
3994 10578 5.789575 TCCCTCCGTCCTATAGTATAAGAGT 59.210 44.000 0.00 0.00 0.00 3.24
3995 10579 6.070078 ACTCCCTCCGTCCTATAGTATAAGAG 60.070 46.154 0.00 0.00 0.00 2.85
3996 10580 5.789575 ACTCCCTCCGTCCTATAGTATAAGA 59.210 44.000 0.00 0.00 0.00 2.10
3997 10581 6.064735 ACTCCCTCCGTCCTATAGTATAAG 57.935 45.833 0.00 0.00 0.00 1.73
3998 10582 6.732862 AGTACTCCCTCCGTCCTATAGTATAA 59.267 42.308 0.00 0.00 0.00 0.98
3999 10583 6.267635 AGTACTCCCTCCGTCCTATAGTATA 58.732 44.000 0.00 0.00 0.00 1.47
4000 10584 5.100094 AGTACTCCCTCCGTCCTATAGTAT 58.900 45.833 0.00 0.00 0.00 2.12
4001 10585 4.497516 AGTACTCCCTCCGTCCTATAGTA 58.502 47.826 0.00 0.00 0.00 1.82
4002 10586 3.325605 AGTACTCCCTCCGTCCTATAGT 58.674 50.000 0.00 0.00 0.00 2.12
4003 10587 5.697082 ATAGTACTCCCTCCGTCCTATAG 57.303 47.826 0.00 0.00 0.00 1.31
4004 10588 8.860517 TTATATAGTACTCCCTCCGTCCTATA 57.139 38.462 0.00 0.00 0.00 1.31
4005 10589 7.761981 TTATATAGTACTCCCTCCGTCCTAT 57.238 40.000 0.00 0.00 0.00 2.57
4006 10590 7.761981 ATTATATAGTACTCCCTCCGTCCTA 57.238 40.000 0.00 0.00 0.00 2.94
4007 10591 6.655376 ATTATATAGTACTCCCTCCGTCCT 57.345 41.667 0.00 0.00 0.00 3.85
4008 10592 6.662663 ACAATTATATAGTACTCCCTCCGTCC 59.337 42.308 0.00 0.00 0.00 4.79
4009 10593 7.700022 ACAATTATATAGTACTCCCTCCGTC 57.300 40.000 0.00 0.00 0.00 4.79
4010 10594 9.186837 CATACAATTATATAGTACTCCCTCCGT 57.813 37.037 0.00 0.00 0.00 4.69
4011 10595 8.136165 GCATACAATTATATAGTACTCCCTCCG 58.864 40.741 0.00 0.00 0.00 4.63
4012 10596 8.978472 TGCATACAATTATATAGTACTCCCTCC 58.022 37.037 0.00 0.00 0.00 4.30
4013 10597 9.804758 GTGCATACAATTATATAGTACTCCCTC 57.195 37.037 0.00 0.00 0.00 4.30
4014 10598 9.548631 AGTGCATACAATTATATAGTACTCCCT 57.451 33.333 0.00 0.00 0.00 4.20
4015 10599 9.587772 CAGTGCATACAATTATATAGTACTCCC 57.412 37.037 0.00 0.00 0.00 4.30
4024 10608 9.850628 GCATCAAATCAGTGCATACAATTATAT 57.149 29.630 0.00 0.00 38.68 0.86
4025 10609 8.848182 TGCATCAAATCAGTGCATACAATTATA 58.152 29.630 0.00 0.00 43.30 0.98
4026 10610 7.718525 TGCATCAAATCAGTGCATACAATTAT 58.281 30.769 0.00 0.00 43.30 1.28
4027 10611 7.098074 TGCATCAAATCAGTGCATACAATTA 57.902 32.000 0.00 0.00 43.30 1.40
4028 10612 5.968254 TGCATCAAATCAGTGCATACAATT 58.032 33.333 0.00 0.00 43.30 2.32
4029 10613 5.585820 TGCATCAAATCAGTGCATACAAT 57.414 34.783 0.00 0.00 43.30 2.71
4030 10614 5.388408 TTGCATCAAATCAGTGCATACAA 57.612 34.783 0.00 0.00 46.90 2.41
4031 10615 5.388408 TTTGCATCAAATCAGTGCATACA 57.612 34.783 0.00 0.00 46.90 2.29
4032 10616 4.266976 GCTTTGCATCAAATCAGTGCATAC 59.733 41.667 0.00 0.00 46.90 2.39
4033 10617 4.426416 GCTTTGCATCAAATCAGTGCATA 58.574 39.130 0.00 0.00 46.90 3.14
4034 10618 3.259064 GCTTTGCATCAAATCAGTGCAT 58.741 40.909 0.00 0.00 46.90 3.96
4035 10619 2.610976 GGCTTTGCATCAAATCAGTGCA 60.611 45.455 0.00 0.00 46.15 4.57
4036 10620 1.997606 GGCTTTGCATCAAATCAGTGC 59.002 47.619 0.00 0.00 39.26 4.40
4037 10621 2.613691 GGGCTTTGCATCAAATCAGTG 58.386 47.619 0.00 0.00 32.70 3.66
4038 10622 1.203052 CGGGCTTTGCATCAAATCAGT 59.797 47.619 0.00 0.00 32.70 3.41
4039 10623 1.470285 CCGGGCTTTGCATCAAATCAG 60.470 52.381 0.00 0.00 32.70 2.90
4040 10624 0.531657 CCGGGCTTTGCATCAAATCA 59.468 50.000 0.00 0.00 32.70 2.57
4041 10625 0.179103 CCCGGGCTTTGCATCAAATC 60.179 55.000 8.08 0.00 32.70 2.17
4042 10626 1.616091 CCCCGGGCTTTGCATCAAAT 61.616 55.000 17.73 0.00 32.70 2.32
4043 10627 2.282039 CCCCGGGCTTTGCATCAAA 61.282 57.895 17.73 0.00 0.00 2.69
4044 10628 2.679642 CCCCGGGCTTTGCATCAA 60.680 61.111 17.73 0.00 0.00 2.57
4045 10629 4.757355 CCCCCGGGCTTTGCATCA 62.757 66.667 17.73 0.00 0.00 3.07
4046 10630 2.847366 TAACCCCCGGGCTTTGCATC 62.847 60.000 17.73 0.00 39.32 3.91
4047 10631 2.448473 TTAACCCCCGGGCTTTGCAT 62.448 55.000 17.73 0.00 39.32 3.96
4048 10632 2.448473 ATTAACCCCCGGGCTTTGCA 62.448 55.000 17.73 1.73 39.32 4.08
4049 10633 1.672854 GATTAACCCCCGGGCTTTGC 61.673 60.000 17.73 0.73 39.32 3.68
4050 10634 1.040893 GGATTAACCCCCGGGCTTTG 61.041 60.000 17.73 5.39 39.32 2.77
4051 10635 1.219131 AGGATTAACCCCCGGGCTTT 61.219 55.000 17.73 12.79 40.05 3.51
4052 10636 1.621514 AGGATTAACCCCCGGGCTT 60.622 57.895 17.73 11.16 40.05 4.35
4053 10637 2.043941 AGGATTAACCCCCGGGCT 59.956 61.111 17.73 3.73 40.05 5.19
4054 10638 2.514395 GAGGATTAACCCCCGGGC 59.486 66.667 17.73 0.00 40.05 6.13
4055 10639 0.991893 AAGGAGGATTAACCCCCGGG 60.992 60.000 15.80 15.80 40.05 5.73
4056 10640 0.924090 AAAGGAGGATTAACCCCCGG 59.076 55.000 0.00 0.00 40.05 5.73
4057 10641 1.133884 GGAAAGGAGGATTAACCCCCG 60.134 57.143 0.00 0.00 40.05 5.73
4058 10642 1.133884 CGGAAAGGAGGATTAACCCCC 60.134 57.143 0.00 0.00 40.05 5.40
4059 10643 1.841919 TCGGAAAGGAGGATTAACCCC 59.158 52.381 0.00 0.00 40.05 4.95
4060 10644 3.639672 TTCGGAAAGGAGGATTAACCC 57.360 47.619 0.00 0.00 40.05 4.11
4061 10645 5.708697 TCTTTTTCGGAAAGGAGGATTAACC 59.291 40.000 0.00 0.00 39.35 2.85
4062 10646 6.812879 TCTTTTTCGGAAAGGAGGATTAAC 57.187 37.500 0.00 0.00 0.00 2.01
4063 10647 7.285858 TGTTTCTTTTTCGGAAAGGAGGATTAA 59.714 33.333 0.88 0.00 33.17 1.40
4064 10648 6.773685 TGTTTCTTTTTCGGAAAGGAGGATTA 59.226 34.615 0.88 0.00 33.17 1.75
4065 10649 5.596772 TGTTTCTTTTTCGGAAAGGAGGATT 59.403 36.000 0.88 0.00 33.17 3.01
4066 10650 5.137551 TGTTTCTTTTTCGGAAAGGAGGAT 58.862 37.500 0.88 0.00 33.17 3.24
4067 10651 4.528920 TGTTTCTTTTTCGGAAAGGAGGA 58.471 39.130 0.88 0.00 33.17 3.71
4068 10652 4.911514 TGTTTCTTTTTCGGAAAGGAGG 57.088 40.909 0.88 0.00 33.17 4.30
4069 10653 7.589574 TTTTTGTTTCTTTTTCGGAAAGGAG 57.410 32.000 0.88 6.46 33.17 3.69
4070 10654 9.825109 ATATTTTTGTTTCTTTTTCGGAAAGGA 57.175 25.926 0.00 0.00 34.02 3.36
4071 10655 9.862585 CATATTTTTGTTTCTTTTTCGGAAAGG 57.137 29.630 3.09 2.52 34.02 3.11
4072 10656 9.862585 CCATATTTTTGTTTCTTTTTCGGAAAG 57.137 29.630 3.09 6.02 34.02 2.62
4073 10657 9.601217 TCCATATTTTTGTTTCTTTTTCGGAAA 57.399 25.926 0.00 0.00 0.00 3.13
4074 10658 9.601217 TTCCATATTTTTGTTTCTTTTTCGGAA 57.399 25.926 0.00 0.00 0.00 4.30
4075 10659 9.601217 TTTCCATATTTTTGTTTCTTTTTCGGA 57.399 25.926 0.00 0.00 0.00 4.55
4085 10669 9.679661 ACAGAACCTTTTTCCATATTTTTGTTT 57.320 25.926 0.00 0.00 0.00 2.83
4089 10673 9.435688 GCATACAGAACCTTTTTCCATATTTTT 57.564 29.630 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.