Multiple sequence alignment - TraesCS4B01G282100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G282100 chr4B 100.000 4057 0 0 1 4057 565095325 565091269 0.000000e+00 7492
1 TraesCS4B01G282100 chr4B 80.044 456 84 6 2584 3037 59236722 59236272 8.400000e-87 331
2 TraesCS4B01G282100 chr4B 80.057 351 64 5 2689 3037 59227173 59226827 5.200000e-64 255
3 TraesCS4B01G282100 chr4D 94.323 1920 56 17 2157 4057 451685367 451683482 0.000000e+00 2892
4 TraesCS4B01G282100 chr4D 91.138 1388 86 22 754 2131 451686723 451685363 0.000000e+00 1847
5 TraesCS4B01G282100 chr4D 80.984 447 80 4 2584 3029 40568123 40567681 2.320000e-92 350
6 TraesCS4B01G282100 chr4A 93.269 1976 86 17 2126 4057 15126754 15124782 0.000000e+00 2868
7 TraesCS4B01G282100 chr4A 92.472 1262 70 11 750 2003 15127999 15126755 0.000000e+00 1781
8 TraesCS4B01G282100 chr4A 82.379 454 77 2 2584 3037 559068210 559067760 3.800000e-105 392
9 TraesCS4B01G282100 chr4A 83.616 354 31 12 377 714 15129204 15128862 1.420000e-79 307
10 TraesCS4B01G282100 chr3B 96.084 332 12 1 1 331 126398322 126398653 1.280000e-149 540
11 TraesCS4B01G282100 chr3B 94.578 332 15 3 1 331 232565709 232565380 1.010000e-140 510
12 TraesCS4B01G282100 chr2B 95.770 331 14 0 1 331 615334983 615335313 5.970000e-148 534
13 TraesCS4B01G282100 chr2B 94.562 331 14 3 1 331 549027188 549026862 3.620000e-140 508
14 TraesCS4B01G282100 chr1B 95.468 331 14 1 1 331 484456469 484456798 9.990000e-146 527
15 TraesCS4B01G282100 chr6B 94.880 332 14 3 1 331 13503861 13504190 2.160000e-142 516
16 TraesCS4B01G282100 chr6B 74.086 629 126 32 2419 3030 30967311 30967919 1.470000e-54 224
17 TraesCS4B01G282100 chr6B 73.684 418 91 17 2624 3030 31575192 31574783 1.180000e-30 145
18 TraesCS4B01G282100 chr1A 94.595 333 15 3 1 332 381239302 381239632 2.800000e-141 512
19 TraesCS4B01G282100 chr1A 94.578 332 15 2 1 331 14610834 14611163 1.010000e-140 510
20 TraesCS4B01G282100 chr7A 94.578 332 15 3 1 331 690201786 690202115 1.010000e-140 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G282100 chr4B 565091269 565095325 4056 True 7492.0 7492 100.000000 1 4057 1 chr4B.!!$R3 4056
1 TraesCS4B01G282100 chr4D 451683482 451686723 3241 True 2369.5 2892 92.730500 754 4057 2 chr4D.!!$R2 3303
2 TraesCS4B01G282100 chr4A 15124782 15129204 4422 True 1652.0 2868 89.785667 377 4057 3 chr4A.!!$R2 3680
3 TraesCS4B01G282100 chr6B 30967311 30967919 608 False 224.0 224 74.086000 2419 3030 1 chr6B.!!$F2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.035820 TTGATTGGTACCGGTGCCTC 60.036 55.0 36.97 28.17 36.24 4.70 F
196 197 0.094730 CGTTTCTTTGTCGATCCGCC 59.905 55.0 0.00 0.00 0.00 6.13 F
374 375 0.094730 GTGAATTCGTTAAGCGCGCT 59.905 50.0 31.32 31.32 41.07 5.92 F
932 1776 0.179020 CAGACCAAACCACAGAGGCA 60.179 55.0 0.00 0.00 43.14 4.75 F
2108 3002 0.601841 ACCGGTAGCGAAAAGTGTGG 60.602 55.0 17.33 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2983 0.601841 CCACACTTTTCGCTACCGGT 60.602 55.000 13.98 13.98 34.56 5.28 R
2093 2987 0.947180 TCGGCCACACTTTTCGCTAC 60.947 55.000 2.24 0.00 0.00 3.58 R
2097 2991 1.890041 TGGTCGGCCACACTTTTCG 60.890 57.895 3.51 0.00 40.46 3.46 R
2510 3404 2.125512 AGCGCCACGGAGATGAAC 60.126 61.111 2.29 0.00 0.00 3.18 R
3780 4700 0.460284 GTGCTCATGTACCTGTCCGG 60.460 60.000 0.00 0.00 39.35 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.435970 TGGAGGGCGTCGGAGCTA 62.436 66.667 0.53 0.00 37.29 3.32
21 22 3.902086 GGAGGGCGTCGGAGCTAC 61.902 72.222 0.53 0.00 37.29 3.58
22 23 3.902086 GAGGGCGTCGGAGCTACC 61.902 72.222 0.00 0.00 37.29 3.18
25 26 3.459063 GGCGTCGGAGCTACCCTT 61.459 66.667 0.00 0.00 37.29 3.95
26 27 2.104530 GCGTCGGAGCTACCCTTC 59.895 66.667 0.00 0.00 34.64 3.46
27 28 2.806237 CGTCGGAGCTACCCTTCC 59.194 66.667 0.00 0.00 34.64 3.46
28 29 1.753463 CGTCGGAGCTACCCTTCCT 60.753 63.158 0.00 0.00 34.64 3.36
29 30 1.726533 CGTCGGAGCTACCCTTCCTC 61.727 65.000 0.00 0.00 34.64 3.71
30 31 0.396001 GTCGGAGCTACCCTTCCTCT 60.396 60.000 0.00 0.00 34.64 3.69
31 32 0.106619 TCGGAGCTACCCTTCCTCTC 60.107 60.000 0.00 0.00 34.64 3.20
32 33 0.106419 CGGAGCTACCCTTCCTCTCT 60.106 60.000 0.00 0.00 34.64 3.10
33 34 1.699730 GGAGCTACCCTTCCTCTCTC 58.300 60.000 0.00 0.00 0.00 3.20
34 35 1.699730 GAGCTACCCTTCCTCTCTCC 58.300 60.000 0.00 0.00 0.00 3.71
35 36 1.216930 GAGCTACCCTTCCTCTCTCCT 59.783 57.143 0.00 0.00 0.00 3.69
36 37 1.216930 AGCTACCCTTCCTCTCTCCTC 59.783 57.143 0.00 0.00 0.00 3.71
37 38 1.063567 GCTACCCTTCCTCTCTCCTCA 60.064 57.143 0.00 0.00 0.00 3.86
38 39 2.425683 GCTACCCTTCCTCTCTCCTCAT 60.426 54.545 0.00 0.00 0.00 2.90
39 40 2.470057 ACCCTTCCTCTCTCCTCATC 57.530 55.000 0.00 0.00 0.00 2.92
40 41 1.327303 CCCTTCCTCTCTCCTCATCG 58.673 60.000 0.00 0.00 0.00 3.84
41 42 1.410932 CCCTTCCTCTCTCCTCATCGT 60.411 57.143 0.00 0.00 0.00 3.73
42 43 1.680735 CCTTCCTCTCTCCTCATCGTG 59.319 57.143 0.00 0.00 0.00 4.35
43 44 2.374184 CTTCCTCTCTCCTCATCGTGT 58.626 52.381 0.00 0.00 0.00 4.49
44 45 3.546724 CTTCCTCTCTCCTCATCGTGTA 58.453 50.000 0.00 0.00 0.00 2.90
45 46 2.920524 TCCTCTCTCCTCATCGTGTAC 58.079 52.381 0.00 0.00 0.00 2.90
46 47 1.950909 CCTCTCTCCTCATCGTGTACC 59.049 57.143 0.00 0.00 0.00 3.34
47 48 1.600013 CTCTCTCCTCATCGTGTACCG 59.400 57.143 0.00 0.00 38.13 4.02
48 49 0.663688 CTCTCCTCATCGTGTACCGG 59.336 60.000 0.00 0.00 37.11 5.28
49 50 0.750546 TCTCCTCATCGTGTACCGGG 60.751 60.000 6.32 0.00 37.11 5.73
50 51 1.735376 CTCCTCATCGTGTACCGGGG 61.735 65.000 6.32 0.00 37.11 5.73
51 52 2.792947 CCTCATCGTGTACCGGGGG 61.793 68.421 6.32 0.00 37.11 5.40
52 53 1.755395 CTCATCGTGTACCGGGGGA 60.755 63.158 6.32 0.00 37.11 4.81
53 54 1.305129 TCATCGTGTACCGGGGGAA 60.305 57.895 6.32 0.00 37.11 3.97
54 55 0.903924 TCATCGTGTACCGGGGGAAA 60.904 55.000 6.32 0.00 37.11 3.13
55 56 0.741927 CATCGTGTACCGGGGGAAAC 60.742 60.000 6.32 0.00 37.11 2.78
56 57 1.902765 ATCGTGTACCGGGGGAAACC 61.903 60.000 6.32 0.00 42.97 3.27
67 68 3.369921 GGAAACCCTTGGCAGCAG 58.630 61.111 0.00 0.00 0.00 4.24
68 69 2.653115 GAAACCCTTGGCAGCAGC 59.347 61.111 0.00 0.00 41.10 5.25
69 70 3.273080 GAAACCCTTGGCAGCAGCG 62.273 63.158 0.00 0.00 43.41 5.18
70 71 4.586235 AACCCTTGGCAGCAGCGT 62.586 61.111 0.00 0.00 43.41 5.07
74 75 3.782244 CTTGGCAGCAGCGTCGTC 61.782 66.667 0.00 0.00 43.41 4.20
75 76 4.299547 TTGGCAGCAGCGTCGTCT 62.300 61.111 0.00 0.00 43.41 4.18
76 77 3.807631 TTGGCAGCAGCGTCGTCTT 62.808 57.895 0.00 0.00 43.41 3.01
77 78 3.482783 GGCAGCAGCGTCGTCTTC 61.483 66.667 0.00 0.00 43.41 2.87
78 79 3.832171 GCAGCAGCGTCGTCTTCG 61.832 66.667 0.00 0.00 38.55 3.79
79 80 2.429236 CAGCAGCGTCGTCTTCGT 60.429 61.111 0.00 0.00 38.33 3.85
80 81 2.126812 AGCAGCGTCGTCTTCGTC 60.127 61.111 0.00 0.00 38.33 4.20
81 82 3.524759 GCAGCGTCGTCTTCGTCG 61.525 66.667 0.00 3.42 46.99 5.12
85 86 3.222323 CGTCGTCTTCGTCGCGTC 61.222 66.667 5.77 0.00 40.72 5.19
86 87 2.127496 GTCGTCTTCGTCGCGTCA 60.127 61.111 5.77 0.00 38.33 4.35
87 88 2.127496 TCGTCTTCGTCGCGTCAC 60.127 61.111 5.77 0.00 38.33 3.67
88 89 2.127345 CGTCTTCGTCGCGTCACT 60.127 61.111 5.77 0.00 0.00 3.41
89 90 1.724929 CGTCTTCGTCGCGTCACTT 60.725 57.895 5.77 0.00 0.00 3.16
90 91 1.653920 CGTCTTCGTCGCGTCACTTC 61.654 60.000 5.77 0.00 0.00 3.01
91 92 0.385723 GTCTTCGTCGCGTCACTTCT 60.386 55.000 5.77 0.00 0.00 2.85
92 93 0.309922 TCTTCGTCGCGTCACTTCTT 59.690 50.000 5.77 0.00 0.00 2.52
93 94 0.431233 CTTCGTCGCGTCACTTCTTG 59.569 55.000 5.77 0.00 0.00 3.02
94 95 0.937699 TTCGTCGCGTCACTTCTTGG 60.938 55.000 5.77 0.00 0.00 3.61
95 96 1.371267 CGTCGCGTCACTTCTTGGA 60.371 57.895 5.77 0.00 0.00 3.53
96 97 1.337817 CGTCGCGTCACTTCTTGGAG 61.338 60.000 5.77 0.00 0.00 3.86
97 98 1.009389 GTCGCGTCACTTCTTGGAGG 61.009 60.000 5.77 0.00 0.00 4.30
98 99 1.006102 CGCGTCACTTCTTGGAGGT 60.006 57.895 0.00 0.00 0.00 3.85
99 100 1.284982 CGCGTCACTTCTTGGAGGTG 61.285 60.000 0.00 3.85 40.31 4.00
100 101 0.249911 GCGTCACTTCTTGGAGGTGT 60.250 55.000 9.06 0.00 39.97 4.16
101 102 1.810412 GCGTCACTTCTTGGAGGTGTT 60.810 52.381 9.06 0.00 39.97 3.32
102 103 1.867233 CGTCACTTCTTGGAGGTGTTG 59.133 52.381 9.06 1.40 39.97 3.33
103 104 2.483013 CGTCACTTCTTGGAGGTGTTGA 60.483 50.000 9.06 0.00 39.97 3.18
104 105 3.744660 GTCACTTCTTGGAGGTGTTGAT 58.255 45.455 9.06 0.00 39.97 2.57
105 106 4.137543 GTCACTTCTTGGAGGTGTTGATT 58.862 43.478 9.06 0.00 39.97 2.57
106 107 4.023707 GTCACTTCTTGGAGGTGTTGATTG 60.024 45.833 9.06 0.00 39.97 2.67
107 108 3.254166 CACTTCTTGGAGGTGTTGATTGG 59.746 47.826 2.33 0.00 35.40 3.16
108 109 3.117512 ACTTCTTGGAGGTGTTGATTGGT 60.118 43.478 0.00 0.00 0.00 3.67
109 110 4.104102 ACTTCTTGGAGGTGTTGATTGGTA 59.896 41.667 0.00 0.00 0.00 3.25
110 111 4.015872 TCTTGGAGGTGTTGATTGGTAC 57.984 45.455 0.00 0.00 0.00 3.34
111 112 2.871096 TGGAGGTGTTGATTGGTACC 57.129 50.000 4.43 4.43 0.00 3.34
112 113 1.002659 TGGAGGTGTTGATTGGTACCG 59.997 52.381 7.57 0.00 38.24 4.02
113 114 1.677820 GGAGGTGTTGATTGGTACCGG 60.678 57.143 7.57 0.00 38.24 5.28
114 115 1.002773 GAGGTGTTGATTGGTACCGGT 59.997 52.381 13.98 13.98 38.24 5.28
115 116 1.161843 GGTGTTGATTGGTACCGGTG 58.838 55.000 19.93 0.00 0.00 4.94
116 117 0.519961 GTGTTGATTGGTACCGGTGC 59.480 55.000 19.93 17.43 0.00 5.01
117 118 0.606944 TGTTGATTGGTACCGGTGCC 60.607 55.000 32.67 32.67 35.78 5.01
118 119 0.322187 GTTGATTGGTACCGGTGCCT 60.322 55.000 36.97 22.05 36.24 4.75
119 120 0.035820 TTGATTGGTACCGGTGCCTC 60.036 55.000 36.97 28.17 36.24 4.70
120 121 1.520787 GATTGGTACCGGTGCCTCG 60.521 63.158 36.97 0.00 36.24 4.63
133 134 3.213402 CCTCGGAGGCTCGGAGTC 61.213 72.222 35.44 13.07 40.81 3.36
134 135 2.124487 CTCGGAGGCTCGGAGTCT 60.124 66.667 32.44 12.77 38.54 3.24
135 136 2.438614 TCGGAGGCTCGGAGTCTG 60.439 66.667 18.28 7.46 24.78 3.51
136 137 3.522731 CGGAGGCTCGGAGTCTGG 61.523 72.222 18.28 4.85 24.78 3.86
137 138 2.363147 GGAGGCTCGGAGTCTGGT 60.363 66.667 18.28 0.00 24.78 4.00
138 139 2.716017 GGAGGCTCGGAGTCTGGTG 61.716 68.421 18.28 0.00 24.78 4.17
139 140 2.681778 AGGCTCGGAGTCTGGTGG 60.682 66.667 12.07 0.00 0.00 4.61
140 141 3.775654 GGCTCGGAGTCTGGTGGG 61.776 72.222 6.90 0.00 0.00 4.61
141 142 2.680352 GCTCGGAGTCTGGTGGGA 60.680 66.667 6.90 0.00 0.00 4.37
142 143 2.716017 GCTCGGAGTCTGGTGGGAG 61.716 68.421 6.90 0.00 0.00 4.30
143 144 1.000771 CTCGGAGTCTGGTGGGAGA 60.001 63.158 0.00 0.00 0.00 3.71
144 145 0.396417 CTCGGAGTCTGGTGGGAGAT 60.396 60.000 0.00 0.00 0.00 2.75
145 146 0.395862 TCGGAGTCTGGTGGGAGATC 60.396 60.000 0.00 0.00 0.00 2.75
146 147 0.396417 CGGAGTCTGGTGGGAGATCT 60.396 60.000 0.00 0.00 0.00 2.75
147 148 1.408969 GGAGTCTGGTGGGAGATCTC 58.591 60.000 14.75 14.75 0.00 2.75
156 157 3.221222 GGAGATCTCCGGTGGGTG 58.779 66.667 25.78 0.00 40.36 4.61
157 158 2.501610 GAGATCTCCGGTGGGTGC 59.498 66.667 12.00 0.00 33.83 5.01
158 159 2.284625 AGATCTCCGGTGGGTGCA 60.285 61.111 0.00 0.00 33.83 4.57
159 160 2.187946 GATCTCCGGTGGGTGCAG 59.812 66.667 0.00 0.00 33.83 4.41
160 161 4.101448 ATCTCCGGTGGGTGCAGC 62.101 66.667 7.55 7.55 33.83 5.25
180 181 4.675404 CCACGAGGCTTCTTCGTT 57.325 55.556 1.24 0.00 38.07 3.85
181 182 2.914379 CCACGAGGCTTCTTCGTTT 58.086 52.632 1.24 0.00 38.07 3.60
182 183 0.790814 CCACGAGGCTTCTTCGTTTC 59.209 55.000 1.24 0.00 38.07 2.78
183 184 1.605712 CCACGAGGCTTCTTCGTTTCT 60.606 52.381 1.24 0.00 38.07 2.52
184 185 2.135933 CACGAGGCTTCTTCGTTTCTT 58.864 47.619 1.24 0.00 38.07 2.52
185 186 2.544267 CACGAGGCTTCTTCGTTTCTTT 59.456 45.455 1.24 0.00 38.07 2.52
186 187 2.544267 ACGAGGCTTCTTCGTTTCTTTG 59.456 45.455 0.00 0.00 36.67 2.77
187 188 2.544267 CGAGGCTTCTTCGTTTCTTTGT 59.456 45.455 0.00 0.00 0.00 2.83
188 189 3.363084 CGAGGCTTCTTCGTTTCTTTGTC 60.363 47.826 0.00 0.00 0.00 3.18
189 190 2.544267 AGGCTTCTTCGTTTCTTTGTCG 59.456 45.455 0.00 0.00 0.00 4.35
190 191 2.542595 GGCTTCTTCGTTTCTTTGTCGA 59.457 45.455 0.00 0.00 0.00 4.20
191 192 3.186613 GGCTTCTTCGTTTCTTTGTCGAT 59.813 43.478 0.00 0.00 33.72 3.59
192 193 4.387083 GCTTCTTCGTTTCTTTGTCGATC 58.613 43.478 0.00 0.00 33.72 3.69
193 194 4.666908 GCTTCTTCGTTTCTTTGTCGATCC 60.667 45.833 0.00 0.00 33.72 3.36
194 195 2.984471 TCTTCGTTTCTTTGTCGATCCG 59.016 45.455 0.00 0.00 33.72 4.18
195 196 1.065358 TCGTTTCTTTGTCGATCCGC 58.935 50.000 0.00 0.00 0.00 5.54
196 197 0.094730 CGTTTCTTTGTCGATCCGCC 59.905 55.000 0.00 0.00 0.00 6.13
197 198 1.153353 GTTTCTTTGTCGATCCGCCA 58.847 50.000 0.00 0.00 0.00 5.69
198 199 1.737793 GTTTCTTTGTCGATCCGCCAT 59.262 47.619 0.00 0.00 0.00 4.40
199 200 2.107950 TTCTTTGTCGATCCGCCATT 57.892 45.000 0.00 0.00 0.00 3.16
200 201 1.368641 TCTTTGTCGATCCGCCATTG 58.631 50.000 0.00 0.00 0.00 2.82
201 202 1.086696 CTTTGTCGATCCGCCATTGT 58.913 50.000 0.00 0.00 0.00 2.71
202 203 1.062587 CTTTGTCGATCCGCCATTGTC 59.937 52.381 0.00 0.00 0.00 3.18
203 204 1.081556 TTGTCGATCCGCCATTGTCG 61.082 55.000 0.00 0.00 35.55 4.35
211 212 2.642700 GCCATTGTCGGCGTTTGT 59.357 55.556 6.85 0.00 43.52 2.83
212 213 1.007849 GCCATTGTCGGCGTTTGTT 60.008 52.632 6.85 0.00 43.52 2.83
213 214 0.596341 GCCATTGTCGGCGTTTGTTT 60.596 50.000 6.85 0.00 43.52 2.83
214 215 1.404477 CCATTGTCGGCGTTTGTTTC 58.596 50.000 6.85 0.00 0.00 2.78
215 216 1.001815 CCATTGTCGGCGTTTGTTTCT 60.002 47.619 6.85 0.00 0.00 2.52
216 217 2.307049 CATTGTCGGCGTTTGTTTCTC 58.693 47.619 6.85 0.00 0.00 2.87
217 218 1.658994 TTGTCGGCGTTTGTTTCTCT 58.341 45.000 6.85 0.00 0.00 3.10
218 219 1.658994 TGTCGGCGTTTGTTTCTCTT 58.341 45.000 6.85 0.00 0.00 2.85
219 220 1.329292 TGTCGGCGTTTGTTTCTCTTG 59.671 47.619 6.85 0.00 0.00 3.02
220 221 1.329599 GTCGGCGTTTGTTTCTCTTGT 59.670 47.619 6.85 0.00 0.00 3.16
221 222 2.540931 GTCGGCGTTTGTTTCTCTTGTA 59.459 45.455 6.85 0.00 0.00 2.41
222 223 3.185797 GTCGGCGTTTGTTTCTCTTGTAT 59.814 43.478 6.85 0.00 0.00 2.29
223 224 3.810941 TCGGCGTTTGTTTCTCTTGTATT 59.189 39.130 6.85 0.00 0.00 1.89
224 225 4.273969 TCGGCGTTTGTTTCTCTTGTATTT 59.726 37.500 6.85 0.00 0.00 1.40
225 226 4.973663 CGGCGTTTGTTTCTCTTGTATTTT 59.026 37.500 0.00 0.00 0.00 1.82
226 227 5.115021 CGGCGTTTGTTTCTCTTGTATTTTC 59.885 40.000 0.00 0.00 0.00 2.29
227 228 6.206498 GGCGTTTGTTTCTCTTGTATTTTCT 58.794 36.000 0.00 0.00 0.00 2.52
228 229 6.359883 GGCGTTTGTTTCTCTTGTATTTTCTC 59.640 38.462 0.00 0.00 0.00 2.87
229 230 7.132863 GCGTTTGTTTCTCTTGTATTTTCTCT 58.867 34.615 0.00 0.00 0.00 3.10
230 231 7.644157 GCGTTTGTTTCTCTTGTATTTTCTCTT 59.356 33.333 0.00 0.00 0.00 2.85
231 232 9.503427 CGTTTGTTTCTCTTGTATTTTCTCTTT 57.497 29.630 0.00 0.00 0.00 2.52
253 254 4.668151 TTTTTGGGGCGTGACTGT 57.332 50.000 0.00 0.00 0.00 3.55
254 255 2.111162 TTTTTGGGGCGTGACTGTG 58.889 52.632 0.00 0.00 0.00 3.66
255 256 2.010582 TTTTTGGGGCGTGACTGTGC 62.011 55.000 0.00 0.00 0.00 4.57
256 257 2.902423 TTTTGGGGCGTGACTGTGCT 62.902 55.000 0.00 0.00 0.00 4.40
257 258 4.624364 TGGGGCGTGACTGTGCTG 62.624 66.667 0.00 0.00 0.00 4.41
259 260 4.996434 GGGCGTGACTGTGCTGCT 62.996 66.667 0.00 0.00 0.00 4.24
260 261 2.974698 GGCGTGACTGTGCTGCTT 60.975 61.111 0.00 0.00 0.00 3.91
261 262 2.553268 GCGTGACTGTGCTGCTTC 59.447 61.111 0.00 0.00 0.00 3.86
262 263 2.959357 GCGTGACTGTGCTGCTTCC 61.959 63.158 0.00 0.00 0.00 3.46
263 264 2.661566 CGTGACTGTGCTGCTTCCG 61.662 63.158 0.00 0.00 0.00 4.30
264 265 2.666190 TGACTGTGCTGCTTCCGC 60.666 61.111 0.00 0.00 0.00 5.54
265 266 3.426568 GACTGTGCTGCTTCCGCC 61.427 66.667 0.00 0.00 34.43 6.13
275 276 3.399181 CTTCCGCCCCAGCACCTA 61.399 66.667 0.00 0.00 39.83 3.08
276 277 2.690881 TTCCGCCCCAGCACCTAT 60.691 61.111 0.00 0.00 39.83 2.57
277 278 2.270874 CTTCCGCCCCAGCACCTATT 62.271 60.000 0.00 0.00 39.83 1.73
278 279 2.516930 CCGCCCCAGCACCTATTG 60.517 66.667 0.00 0.00 39.83 1.90
279 280 2.272146 CGCCCCAGCACCTATTGT 59.728 61.111 0.00 0.00 39.83 2.71
280 281 1.378514 CGCCCCAGCACCTATTGTT 60.379 57.895 0.00 0.00 39.83 2.83
281 282 1.656818 CGCCCCAGCACCTATTGTTG 61.657 60.000 0.00 0.00 39.83 3.33
288 289 4.789012 CAGCACCTATTGTTGGATGTTT 57.211 40.909 0.00 0.00 32.91 2.83
289 290 4.737054 CAGCACCTATTGTTGGATGTTTC 58.263 43.478 0.00 0.00 32.91 2.78
290 291 3.440173 AGCACCTATTGTTGGATGTTTCG 59.560 43.478 0.00 0.00 0.00 3.46
291 292 3.758300 CACCTATTGTTGGATGTTTCGC 58.242 45.455 0.00 0.00 0.00 4.70
292 293 3.440173 CACCTATTGTTGGATGTTTCGCT 59.560 43.478 0.00 0.00 0.00 4.93
293 294 4.079253 ACCTATTGTTGGATGTTTCGCTT 58.921 39.130 0.00 0.00 0.00 4.68
294 295 4.082787 ACCTATTGTTGGATGTTTCGCTTG 60.083 41.667 0.00 0.00 0.00 4.01
295 296 2.791383 TTGTTGGATGTTTCGCTTGG 57.209 45.000 0.00 0.00 0.00 3.61
296 297 1.686355 TGTTGGATGTTTCGCTTGGT 58.314 45.000 0.00 0.00 0.00 3.67
297 298 2.028130 TGTTGGATGTTTCGCTTGGTT 58.972 42.857 0.00 0.00 0.00 3.67
298 299 2.223688 TGTTGGATGTTTCGCTTGGTTG 60.224 45.455 0.00 0.00 0.00 3.77
299 300 0.313672 TGGATGTTTCGCTTGGTTGC 59.686 50.000 0.00 0.00 0.00 4.17
300 301 0.598065 GGATGTTTCGCTTGGTTGCT 59.402 50.000 0.00 0.00 0.00 3.91
301 302 1.000274 GGATGTTTCGCTTGGTTGCTT 60.000 47.619 0.00 0.00 0.00 3.91
302 303 2.545742 GGATGTTTCGCTTGGTTGCTTT 60.546 45.455 0.00 0.00 0.00 3.51
303 304 1.919918 TGTTTCGCTTGGTTGCTTTG 58.080 45.000 0.00 0.00 0.00 2.77
304 305 1.203523 TGTTTCGCTTGGTTGCTTTGT 59.796 42.857 0.00 0.00 0.00 2.83
305 306 2.423892 TGTTTCGCTTGGTTGCTTTGTA 59.576 40.909 0.00 0.00 0.00 2.41
306 307 3.067461 TGTTTCGCTTGGTTGCTTTGTAT 59.933 39.130 0.00 0.00 0.00 2.29
307 308 4.276183 TGTTTCGCTTGGTTGCTTTGTATA 59.724 37.500 0.00 0.00 0.00 1.47
308 309 4.413495 TTCGCTTGGTTGCTTTGTATAC 57.587 40.909 0.00 0.00 0.00 1.47
309 310 3.403968 TCGCTTGGTTGCTTTGTATACA 58.596 40.909 0.08 0.08 0.00 2.29
310 311 3.815962 TCGCTTGGTTGCTTTGTATACAA 59.184 39.130 14.35 14.35 0.00 2.41
311 312 4.276183 TCGCTTGGTTGCTTTGTATACAAA 59.724 37.500 25.48 25.48 42.90 2.83
322 323 5.616488 TTTGTATACAAAGCGGGAGAAAC 57.384 39.130 23.91 0.00 40.55 2.78
323 324 3.602483 TGTATACAAAGCGGGAGAAACC 58.398 45.455 2.20 0.00 38.08 3.27
324 325 5.104119 TTGTATACAAAGCGGGAGAAACCC 61.104 45.833 15.92 0.00 43.12 4.11
325 326 7.271713 TTGTATACAAAGCGGGAGAAACCCT 62.272 44.000 15.92 0.00 43.78 4.34
326 327 8.660838 TTGTATACAAAGCGGGAGAAACCCTT 62.661 42.308 15.92 0.00 43.78 3.95
340 341 7.896811 GGAGAAACCCTTTTTCAATATTGAGT 58.103 34.615 17.28 8.77 38.61 3.41
341 342 9.020731 GGAGAAACCCTTTTTCAATATTGAGTA 57.979 33.333 17.28 8.02 38.61 2.59
343 344 9.807921 AGAAACCCTTTTTCAATATTGAGTAGA 57.192 29.630 17.28 0.98 38.61 2.59
345 346 9.807921 AAACCCTTTTTCAATATTGAGTAGAGA 57.192 29.630 17.28 0.00 38.61 3.10
346 347 8.794335 ACCCTTTTTCAATATTGAGTAGAGAC 57.206 34.615 17.28 0.00 38.61 3.36
347 348 8.383175 ACCCTTTTTCAATATTGAGTAGAGACA 58.617 33.333 17.28 0.00 38.61 3.41
348 349 8.669243 CCCTTTTTCAATATTGAGTAGAGACAC 58.331 37.037 17.28 0.00 38.61 3.67
349 350 9.219603 CCTTTTTCAATATTGAGTAGAGACACA 57.780 33.333 17.28 0.00 38.61 3.72
355 356 9.971922 TCAATATTGAGTAGAGACACATACATG 57.028 33.333 14.23 0.00 32.50 3.21
356 357 9.755804 CAATATTGAGTAGAGACACATACATGT 57.244 33.333 10.04 2.69 42.84 3.21
370 371 5.795766 ACATACATGTGAATTCGTTAAGCG 58.204 37.500 9.11 0.00 40.03 4.68
371 372 3.117434 ACATGTGAATTCGTTAAGCGC 57.883 42.857 0.00 0.00 41.07 5.92
372 373 2.093638 CATGTGAATTCGTTAAGCGCG 58.906 47.619 0.00 0.00 41.07 6.86
373 374 0.179235 TGTGAATTCGTTAAGCGCGC 60.179 50.000 26.66 26.66 41.07 6.86
374 375 0.094730 GTGAATTCGTTAAGCGCGCT 59.905 50.000 31.32 31.32 41.07 5.92
375 376 1.322338 GTGAATTCGTTAAGCGCGCTA 59.678 47.619 36.73 18.30 41.07 4.26
376 377 2.034001 GTGAATTCGTTAAGCGCGCTAT 60.034 45.455 36.73 25.29 41.07 2.97
377 378 2.217847 TGAATTCGTTAAGCGCGCTATC 59.782 45.455 36.73 24.50 41.07 2.08
378 379 1.847818 ATTCGTTAAGCGCGCTATCA 58.152 45.000 36.73 20.01 41.07 2.15
379 380 1.847818 TTCGTTAAGCGCGCTATCAT 58.152 45.000 36.73 21.80 41.07 2.45
380 381 2.691984 TCGTTAAGCGCGCTATCATA 57.308 45.000 36.73 20.58 41.07 2.15
396 397 5.006358 GCTATCATACACTTTTGTACACCGG 59.994 44.000 0.00 0.00 41.12 5.28
421 422 6.259387 GGTAAATTGTATTGTACTCCCTTCCG 59.741 42.308 0.00 0.00 0.00 4.30
425 426 3.640029 TGTATTGTACTCCCTTCCGATCC 59.360 47.826 0.00 0.00 0.00 3.36
458 459 2.117156 GCTGCTCCCGCATGTGAAT 61.117 57.895 8.11 0.00 46.74 2.57
481 482 9.328845 GAATTGTAAATTCATAACCAATGGCAT 57.671 29.630 0.00 0.00 36.15 4.40
544 549 2.015081 TGCACTACTGGATGCATGCAG 61.015 52.381 37.53 37.53 46.63 4.41
556 561 3.139603 TGCATGCAGAAAATCATGACG 57.860 42.857 18.46 0.00 41.82 4.35
560 565 3.829886 TGCAGAAAATCATGACGGTTC 57.170 42.857 0.00 2.05 0.00 3.62
562 567 3.567585 TGCAGAAAATCATGACGGTTCAA 59.432 39.130 14.14 1.52 34.61 2.69
563 568 3.914364 GCAGAAAATCATGACGGTTCAAC 59.086 43.478 14.14 5.18 34.61 3.18
568 573 7.009999 CAGAAAATCATGACGGTTCAACAAAAA 59.990 33.333 14.14 0.00 34.61 1.94
569 574 6.826893 AAATCATGACGGTTCAACAAAAAG 57.173 33.333 0.00 0.00 34.61 2.27
573 578 5.802956 TCATGACGGTTCAACAAAAAGTTTC 59.197 36.000 0.00 0.00 38.74 2.78
574 579 4.487019 TGACGGTTCAACAAAAAGTTTCC 58.513 39.130 0.00 0.00 38.74 3.13
575 580 3.503891 ACGGTTCAACAAAAAGTTTCCG 58.496 40.909 6.57 6.57 44.50 4.30
576 581 3.190953 ACGGTTCAACAAAAAGTTTCCGA 59.809 39.130 13.20 0.00 43.11 4.55
577 582 3.789224 CGGTTCAACAAAAAGTTTCCGAG 59.211 43.478 2.81 0.00 43.11 4.63
578 583 4.437659 CGGTTCAACAAAAAGTTTCCGAGA 60.438 41.667 2.81 0.00 43.11 4.04
579 584 5.588240 GGTTCAACAAAAAGTTTCCGAGAT 58.412 37.500 0.00 0.00 38.74 2.75
580 585 5.458779 GGTTCAACAAAAAGTTTCCGAGATG 59.541 40.000 0.00 0.00 38.74 2.90
621 626 5.003160 AGTTCATGGTCAAATGACATTCGA 58.997 37.500 14.93 0.00 46.47 3.71
660 673 7.599998 AGTTGTCAATGAAACTTTGAATATGGC 59.400 33.333 5.44 0.00 32.75 4.40
664 677 8.938906 GTCAATGAAACTTTGAATATGGCAATT 58.061 29.630 0.00 0.00 0.00 2.32
670 683 7.894376 AACTTTGAATATGGCAATTGTTGAG 57.106 32.000 7.40 0.00 0.00 3.02
673 686 6.587206 TTGAATATGGCAATTGTTGAGACA 57.413 33.333 7.40 0.00 0.00 3.41
678 691 8.467963 AATATGGCAATTGTTGAGACATGATA 57.532 30.769 7.40 0.00 35.29 2.15
682 695 7.259882 TGGCAATTGTTGAGACATGATATTTC 58.740 34.615 7.40 0.00 35.29 2.17
690 703 9.681692 TGTTGAGACATGATATTTCTTTTTGTG 57.318 29.630 0.00 0.00 0.00 3.33
691 704 9.683069 GTTGAGACATGATATTTCTTTTTGTGT 57.317 29.630 0.00 0.00 0.00 3.72
714 731 7.379529 GTGTAAGTGGTGAATGACATTTTCTTG 59.620 37.037 1.39 0.00 0.00 3.02
715 732 6.713762 AAGTGGTGAATGACATTTTCTTGA 57.286 33.333 1.39 0.00 0.00 3.02
716 733 6.076981 AGTGGTGAATGACATTTTCTTGAC 57.923 37.500 1.39 0.00 0.00 3.18
717 734 5.593909 AGTGGTGAATGACATTTTCTTGACA 59.406 36.000 1.39 0.00 0.00 3.58
720 737 5.346822 GGTGAATGACATTTTCTTGACATGC 59.653 40.000 1.39 0.00 33.38 4.06
721 738 5.060077 GTGAATGACATTTTCTTGACATGCG 59.940 40.000 1.39 0.00 32.13 4.73
722 739 4.771590 ATGACATTTTCTTGACATGCGT 57.228 36.364 0.00 0.00 32.17 5.24
723 740 4.566545 TGACATTTTCTTGACATGCGTT 57.433 36.364 0.00 0.00 0.00 4.84
726 743 6.676950 TGACATTTTCTTGACATGCGTTTAT 58.323 32.000 0.00 0.00 0.00 1.40
728 745 7.651304 TGACATTTTCTTGACATGCGTTTATTT 59.349 29.630 0.00 0.00 0.00 1.40
729 746 8.364129 ACATTTTCTTGACATGCGTTTATTTT 57.636 26.923 0.00 0.00 0.00 1.82
730 747 9.469807 ACATTTTCTTGACATGCGTTTATTTTA 57.530 25.926 0.00 0.00 0.00 1.52
731 748 9.726034 CATTTTCTTGACATGCGTTTATTTTAC 57.274 29.630 0.00 0.00 0.00 2.01
732 749 8.858003 TTTTCTTGACATGCGTTTATTTTACA 57.142 26.923 0.00 0.00 0.00 2.41
733 750 8.500837 TTTCTTGACATGCGTTTATTTTACAG 57.499 30.769 0.00 0.00 0.00 2.74
734 751 7.197071 TCTTGACATGCGTTTATTTTACAGT 57.803 32.000 0.00 0.00 0.00 3.55
735 752 7.644490 TCTTGACATGCGTTTATTTTACAGTT 58.356 30.769 0.00 0.00 0.00 3.16
736 753 7.801315 TCTTGACATGCGTTTATTTTACAGTTC 59.199 33.333 0.00 0.00 0.00 3.01
739 756 8.941977 TGACATGCGTTTATTTTACAGTTCTAT 58.058 29.630 0.00 0.00 0.00 1.98
745 762 9.646336 GCGTTTATTTTACAGTTCTATATGTGG 57.354 33.333 0.00 0.00 0.00 4.17
746 763 9.646336 CGTTTATTTTACAGTTCTATATGTGGC 57.354 33.333 0.00 0.00 0.00 5.01
772 1616 0.302589 ACAAACGAAGAAACGCGGAC 59.697 50.000 12.47 0.51 36.70 4.79
778 1622 1.123756 CGAAGAAACGCGGACTACAAC 59.876 52.381 12.47 0.00 0.00 3.32
803 1647 2.973419 TTCGTCCACAATTTTACCGC 57.027 45.000 0.00 0.00 0.00 5.68
804 1648 2.172851 TCGTCCACAATTTTACCGCT 57.827 45.000 0.00 0.00 0.00 5.52
805 1649 2.070783 TCGTCCACAATTTTACCGCTC 58.929 47.619 0.00 0.00 0.00 5.03
806 1650 1.801771 CGTCCACAATTTTACCGCTCA 59.198 47.619 0.00 0.00 0.00 4.26
932 1776 0.179020 CAGACCAAACCACAGAGGCA 60.179 55.000 0.00 0.00 43.14 4.75
937 1781 1.546323 CCAAACCACAGAGGCACAGAT 60.546 52.381 0.00 0.00 43.14 2.90
1296 2146 2.583593 GACATCGAGTCCGCAGCC 60.584 66.667 0.00 0.00 41.56 4.85
1533 2383 4.516195 GTCGGCGAGAGGAAGGCC 62.516 72.222 11.20 0.00 43.42 5.19
1675 2526 2.681344 GTTAAAGCCCTGATGTTACCCG 59.319 50.000 0.00 0.00 0.00 5.28
1706 2557 4.027755 CGCTGCCCGTCGATAAAT 57.972 55.556 0.00 0.00 0.00 1.40
1707 2558 1.853319 CGCTGCCCGTCGATAAATC 59.147 57.895 0.00 0.00 0.00 2.17
1708 2559 0.874175 CGCTGCCCGTCGATAAATCA 60.874 55.000 0.00 0.00 0.00 2.57
1709 2560 1.295792 GCTGCCCGTCGATAAATCAA 58.704 50.000 0.00 0.00 0.00 2.57
1710 2561 1.668751 GCTGCCCGTCGATAAATCAAA 59.331 47.619 0.00 0.00 0.00 2.69
1711 2562 2.290641 GCTGCCCGTCGATAAATCAAAT 59.709 45.455 0.00 0.00 0.00 2.32
1712 2563 3.849645 GCTGCCCGTCGATAAATCAAATG 60.850 47.826 0.00 0.00 0.00 2.32
1713 2564 2.616376 TGCCCGTCGATAAATCAAATGG 59.384 45.455 0.00 0.00 0.00 3.16
1714 2565 2.616842 GCCCGTCGATAAATCAAATGGT 59.383 45.455 0.00 0.00 0.00 3.55
1715 2566 3.066203 GCCCGTCGATAAATCAAATGGTT 59.934 43.478 0.00 0.00 0.00 3.67
1716 2567 4.788521 GCCCGTCGATAAATCAAATGGTTC 60.789 45.833 0.00 0.00 0.00 3.62
1717 2568 4.261031 CCCGTCGATAAATCAAATGGTTCC 60.261 45.833 0.00 0.00 0.00 3.62
1718 2569 4.334203 CCGTCGATAAATCAAATGGTTCCA 59.666 41.667 0.00 0.00 0.00 3.53
1719 2570 5.008613 CCGTCGATAAATCAAATGGTTCCAT 59.991 40.000 0.00 0.00 0.00 3.41
1720 2571 6.203915 CCGTCGATAAATCAAATGGTTCCATA 59.796 38.462 4.67 0.00 0.00 2.74
1721 2572 7.094805 CCGTCGATAAATCAAATGGTTCCATAT 60.095 37.037 4.67 0.00 0.00 1.78
1722 2573 7.746034 CGTCGATAAATCAAATGGTTCCATATG 59.254 37.037 4.67 0.00 0.00 1.78
1723 2574 7.538678 GTCGATAAATCAAATGGTTCCATATGC 59.461 37.037 4.67 0.00 0.00 3.14
1724 2575 6.808212 CGATAAATCAAATGGTTCCATATGCC 59.192 38.462 4.67 0.00 0.00 4.40
1725 2576 4.589216 AATCAAATGGTTCCATATGCCG 57.411 40.909 4.67 0.00 0.00 5.69
1726 2577 2.305928 TCAAATGGTTCCATATGCCGG 58.694 47.619 4.67 0.00 0.00 6.13
1727 2578 1.039856 AAATGGTTCCATATGCCGGC 58.960 50.000 22.73 22.73 0.00 6.13
1728 2579 1.172180 AATGGTTCCATATGCCGGCG 61.172 55.000 23.90 6.99 0.00 6.46
1737 2613 1.092921 ATATGCCGGCGCGAAAAAGA 61.093 50.000 23.90 0.00 38.08 2.52
1767 2643 1.618861 CGTTCTAGTCAACCTGAGCG 58.381 55.000 0.00 0.00 0.00 5.03
1771 2647 2.457598 TCTAGTCAACCTGAGCGGATT 58.542 47.619 0.00 0.00 36.31 3.01
1776 2652 1.071542 TCAACCTGAGCGGATTGTTCA 59.928 47.619 0.00 0.00 36.31 3.18
1779 2655 1.019673 CCTGAGCGGATTGTTCATGG 58.980 55.000 0.00 0.00 37.18 3.66
1784 2660 2.816087 GAGCGGATTGTTCATGGCATAT 59.184 45.455 0.00 0.00 0.00 1.78
1827 2716 2.503061 CAGGATGGCTGAGGGTCG 59.497 66.667 0.00 0.00 0.00 4.79
1850 2741 7.806960 GTCGGCTTATAGTAGTACCTAAACATG 59.193 40.741 0.00 0.00 0.00 3.21
1883 2774 4.240175 TCTCTTGATCATCATCAGCTCG 57.760 45.455 0.00 0.00 40.28 5.03
1994 2886 3.318006 TAACCACGTCCCATGGCGG 62.318 63.158 15.03 8.37 41.31 6.13
2033 2925 4.725359 CCCTTTTTGCATGCTTTTATTGC 58.275 39.130 20.33 0.00 36.91 3.56
2047 2941 6.086871 GCTTTTATTGCAGTACTGTTCTTCC 58.913 40.000 23.44 6.84 0.00 3.46
2067 2961 4.211125 TCCTGTGCAAACTAACCATTTCA 58.789 39.130 0.00 0.00 0.00 2.69
2068 2962 4.278170 TCCTGTGCAAACTAACCATTTCAG 59.722 41.667 0.00 0.00 0.00 3.02
2092 2986 7.696453 CAGGTTAATCTTGTTAAAATGCTACCG 59.304 37.037 0.00 0.00 0.00 4.02
2093 2987 6.970613 GGTTAATCTTGTTAAAATGCTACCGG 59.029 38.462 0.00 0.00 0.00 5.28
2094 2988 7.362315 GGTTAATCTTGTTAAAATGCTACCGGT 60.362 37.037 13.98 13.98 0.00 5.28
2095 2989 8.667463 GTTAATCTTGTTAAAATGCTACCGGTA 58.333 33.333 14.95 14.95 0.00 4.02
2096 2990 6.920569 ATCTTGTTAAAATGCTACCGGTAG 57.079 37.500 33.18 33.18 36.29 3.18
2106 3000 2.358939 CTACCGGTAGCGAAAAGTGT 57.641 50.000 27.93 6.39 0.00 3.55
2107 3001 1.990563 CTACCGGTAGCGAAAAGTGTG 59.009 52.381 27.93 1.58 0.00 3.82
2108 3002 0.601841 ACCGGTAGCGAAAAGTGTGG 60.602 55.000 17.33 0.00 0.00 4.17
2109 3003 1.495951 CGGTAGCGAAAAGTGTGGC 59.504 57.895 9.07 0.00 0.00 5.01
2110 3004 1.873863 GGTAGCGAAAAGTGTGGCC 59.126 57.895 0.00 0.00 0.00 5.36
2113 3007 0.947180 TAGCGAAAAGTGTGGCCGAC 60.947 55.000 0.00 0.00 0.00 4.79
2144 3038 6.364165 TCACTACTTGTATACAAAGTTCGTGC 59.636 38.462 18.55 0.00 35.15 5.34
2330 3224 1.632965 GGTACCCCATCGGCTTCCTT 61.633 60.000 0.00 0.00 33.26 3.36
2834 3731 1.132500 GGATGGACCCCTTCTACCTG 58.868 60.000 0.00 0.00 0.00 4.00
2843 3740 3.852578 ACCCCTTCTACCTGTTCATGAAT 59.147 43.478 12.12 0.00 0.00 2.57
3060 3957 4.683334 GCAAGGGCACGTGAACGC 62.683 66.667 22.23 11.00 44.43 4.84
3069 3966 2.096406 CGTGAACGCGATTGCCTG 59.904 61.111 15.93 0.00 38.08 4.85
3070 3967 2.480555 GTGAACGCGATTGCCTGG 59.519 61.111 15.93 0.00 38.08 4.45
3092 3998 3.734902 GCCGGACAATGATTTGTTGATCC 60.735 47.826 5.05 0.00 46.01 3.36
3095 4001 5.394443 CCGGACAATGATTTGTTGATCCATT 60.394 40.000 0.00 0.00 46.01 3.16
3097 4003 6.625520 CGGACAATGATTTGTTGATCCATTGA 60.626 38.462 19.16 0.00 46.01 2.57
3098 4004 7.270047 GGACAATGATTTGTTGATCCATTGAT 58.730 34.615 19.16 8.47 46.01 2.57
3178 4088 2.169561 TCAGTGGCCTGCGATTACAATA 59.830 45.455 3.32 0.00 38.66 1.90
3181 4091 4.389992 CAGTGGCCTGCGATTACAATATAG 59.610 45.833 3.32 0.00 0.00 1.31
3182 4092 4.040461 AGTGGCCTGCGATTACAATATAGT 59.960 41.667 3.32 0.00 0.00 2.12
3221 4131 2.740055 CGCGTTGCAGCTCTTCCT 60.740 61.111 0.00 0.00 34.40 3.36
3236 4146 4.033776 CCTGCAGAAGCCGGGGAA 62.034 66.667 17.39 0.00 41.03 3.97
3285 4195 1.978617 CTTGGCGCACTCCCCATTT 60.979 57.895 10.83 0.00 0.00 2.32
3402 4312 4.373116 GCCGACCACTTCTCGCCA 62.373 66.667 0.00 0.00 0.00 5.69
3411 4321 1.107114 ACTTCTCGCCATCGATCACT 58.893 50.000 0.00 0.00 44.56 3.41
3508 4418 1.095228 CACAGGTTTCACTGCCACGT 61.095 55.000 0.00 0.00 42.21 4.49
3513 4423 2.356695 AGGTTTCACTGCCACGTAAAAC 59.643 45.455 0.00 0.00 0.00 2.43
3546 4461 2.548057 CCAAAGTGTAGTGCGTCACATT 59.452 45.455 11.58 0.00 36.74 2.71
3557 4472 5.344066 AGTGCGTCACATTAAGAGATACTG 58.656 41.667 11.58 0.00 36.74 2.74
3558 4473 4.026475 GTGCGTCACATTAAGAGATACTGC 60.026 45.833 5.30 0.00 34.08 4.40
3559 4474 4.142160 TGCGTCACATTAAGAGATACTGCT 60.142 41.667 0.00 0.00 0.00 4.24
3581 4496 2.121948 AGACTATCTGCATGGCCAAGA 58.878 47.619 10.96 9.22 0.00 3.02
3702 4617 1.622312 AGGTCGTAGGTTGGGAAGAAC 59.378 52.381 0.00 0.00 0.00 3.01
3718 4637 4.022762 GGAAGAACGAGATATGCAGCTAGA 60.023 45.833 0.00 0.00 0.00 2.43
3719 4638 5.336372 GGAAGAACGAGATATGCAGCTAGAT 60.336 44.000 0.00 0.00 0.00 1.98
3731 4651 3.987547 GCAGCTAGATAACAGATCTGCA 58.012 45.455 22.83 11.25 43.32 4.41
4002 4951 0.108424 GGGGAGAGCATAGCATAGCG 60.108 60.000 0.00 0.00 35.48 4.26
4047 4996 1.611936 CGGCGATCCTCTCCTCTATCA 60.612 57.143 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.902086 GGTAGCTCCGACGCCCTC 61.902 72.222 0.00 0.00 0.00 4.30
8 9 3.427598 GAAGGGTAGCTCCGACGCC 62.428 68.421 0.00 0.00 37.00 5.68
9 10 2.104530 GAAGGGTAGCTCCGACGC 59.895 66.667 0.00 0.00 37.00 5.19
10 11 1.726533 GAGGAAGGGTAGCTCCGACG 61.727 65.000 0.00 0.00 36.78 5.12
11 12 0.396001 AGAGGAAGGGTAGCTCCGAC 60.396 60.000 0.00 0.00 36.78 4.79
12 13 0.106619 GAGAGGAAGGGTAGCTCCGA 60.107 60.000 0.00 0.00 36.78 4.55
13 14 0.106419 AGAGAGGAAGGGTAGCTCCG 60.106 60.000 0.00 0.00 36.78 4.63
14 15 1.699730 GAGAGAGGAAGGGTAGCTCC 58.300 60.000 0.00 0.00 0.00 4.70
15 16 1.216930 AGGAGAGAGGAAGGGTAGCTC 59.783 57.143 0.00 0.00 0.00 4.09
16 17 1.216930 GAGGAGAGAGGAAGGGTAGCT 59.783 57.143 0.00 0.00 0.00 3.32
17 18 1.063567 TGAGGAGAGAGGAAGGGTAGC 60.064 57.143 0.00 0.00 0.00 3.58
18 19 3.496331 GATGAGGAGAGAGGAAGGGTAG 58.504 54.545 0.00 0.00 0.00 3.18
19 20 2.158593 CGATGAGGAGAGAGGAAGGGTA 60.159 54.545 0.00 0.00 0.00 3.69
20 21 1.410932 CGATGAGGAGAGAGGAAGGGT 60.411 57.143 0.00 0.00 0.00 4.34
21 22 1.327303 CGATGAGGAGAGAGGAAGGG 58.673 60.000 0.00 0.00 0.00 3.95
22 23 1.680735 CACGATGAGGAGAGAGGAAGG 59.319 57.143 0.00 0.00 0.00 3.46
23 24 2.374184 ACACGATGAGGAGAGAGGAAG 58.626 52.381 0.00 0.00 0.00 3.46
24 25 2.516227 ACACGATGAGGAGAGAGGAA 57.484 50.000 0.00 0.00 0.00 3.36
25 26 2.421670 GGTACACGATGAGGAGAGAGGA 60.422 54.545 0.00 0.00 0.00 3.71
26 27 1.950909 GGTACACGATGAGGAGAGAGG 59.049 57.143 0.00 0.00 0.00 3.69
39 40 2.046988 GGTTTCCCCCGGTACACG 60.047 66.667 0.00 0.00 43.80 4.49
40 41 2.352422 GGGTTTCCCCCGGTACAC 59.648 66.667 0.00 0.00 45.80 2.90
49 50 2.203625 TGCTGCCAAGGGTTTCCC 60.204 61.111 0.00 0.00 45.90 3.97
50 51 2.935740 GCTGCTGCCAAGGGTTTCC 61.936 63.158 3.85 0.00 0.00 3.13
51 52 2.653115 GCTGCTGCCAAGGGTTTC 59.347 61.111 3.85 0.00 0.00 2.78
52 53 3.297620 CGCTGCTGCCAAGGGTTT 61.298 61.111 10.24 0.00 35.36 3.27
53 54 4.586235 ACGCTGCTGCCAAGGGTT 62.586 61.111 10.24 0.00 35.36 4.11
57 58 3.782244 GACGACGCTGCTGCCAAG 61.782 66.667 10.24 3.84 35.36 3.61
58 59 3.807631 AAGACGACGCTGCTGCCAA 62.808 57.895 10.24 0.00 35.36 4.52
59 60 4.299547 AAGACGACGCTGCTGCCA 62.300 61.111 10.24 0.00 35.36 4.92
60 61 3.482783 GAAGACGACGCTGCTGCC 61.483 66.667 10.24 0.00 35.36 4.85
61 62 3.832171 CGAAGACGACGCTGCTGC 61.832 66.667 5.34 5.34 42.66 5.25
62 63 2.429236 ACGAAGACGACGCTGCTG 60.429 61.111 0.00 0.00 42.66 4.41
63 64 2.126812 GACGAAGACGACGCTGCT 60.127 61.111 0.00 0.00 42.66 4.24
72 73 0.385723 AGAAGTGACGCGACGAAGAC 60.386 55.000 15.93 0.00 0.00 3.01
73 74 0.309922 AAGAAGTGACGCGACGAAGA 59.690 50.000 15.93 0.00 0.00 2.87
74 75 0.431233 CAAGAAGTGACGCGACGAAG 59.569 55.000 15.93 0.00 0.00 3.79
75 76 0.937699 CCAAGAAGTGACGCGACGAA 60.938 55.000 15.93 0.00 0.00 3.85
76 77 1.371267 CCAAGAAGTGACGCGACGA 60.371 57.895 15.93 0.00 0.00 4.20
77 78 1.337817 CTCCAAGAAGTGACGCGACG 61.338 60.000 15.93 0.00 0.00 5.12
78 79 1.009389 CCTCCAAGAAGTGACGCGAC 61.009 60.000 15.93 7.62 0.00 5.19
79 80 1.289066 CCTCCAAGAAGTGACGCGA 59.711 57.895 15.93 0.00 0.00 5.87
80 81 1.006102 ACCTCCAAGAAGTGACGCG 60.006 57.895 3.53 3.53 0.00 6.01
81 82 0.249911 ACACCTCCAAGAAGTGACGC 60.250 55.000 0.51 0.00 35.47 5.19
82 83 1.867233 CAACACCTCCAAGAAGTGACG 59.133 52.381 0.51 0.00 35.47 4.35
83 84 3.194005 TCAACACCTCCAAGAAGTGAC 57.806 47.619 0.51 0.00 35.47 3.67
84 85 4.136796 CAATCAACACCTCCAAGAAGTGA 58.863 43.478 0.51 0.00 35.47 3.41
85 86 3.254166 CCAATCAACACCTCCAAGAAGTG 59.746 47.826 0.00 0.00 37.53 3.16
86 87 3.117512 ACCAATCAACACCTCCAAGAAGT 60.118 43.478 0.00 0.00 0.00 3.01
87 88 3.490348 ACCAATCAACACCTCCAAGAAG 58.510 45.455 0.00 0.00 0.00 2.85
88 89 3.593442 ACCAATCAACACCTCCAAGAA 57.407 42.857 0.00 0.00 0.00 2.52
89 90 3.244770 GGTACCAATCAACACCTCCAAGA 60.245 47.826 7.15 0.00 0.00 3.02
90 91 3.081804 GGTACCAATCAACACCTCCAAG 58.918 50.000 7.15 0.00 0.00 3.61
91 92 2.551287 CGGTACCAATCAACACCTCCAA 60.551 50.000 13.54 0.00 0.00 3.53
92 93 1.002659 CGGTACCAATCAACACCTCCA 59.997 52.381 13.54 0.00 0.00 3.86
93 94 1.677820 CCGGTACCAATCAACACCTCC 60.678 57.143 13.54 0.00 0.00 4.30
94 95 1.002773 ACCGGTACCAATCAACACCTC 59.997 52.381 4.49 0.00 0.00 3.85
95 96 1.061546 ACCGGTACCAATCAACACCT 58.938 50.000 4.49 0.00 0.00 4.00
96 97 1.161843 CACCGGTACCAATCAACACC 58.838 55.000 6.87 0.00 0.00 4.16
97 98 0.519961 GCACCGGTACCAATCAACAC 59.480 55.000 6.87 0.00 0.00 3.32
98 99 0.606944 GGCACCGGTACCAATCAACA 60.607 55.000 19.64 0.00 0.00 3.33
99 100 0.322187 AGGCACCGGTACCAATCAAC 60.322 55.000 25.97 0.00 0.00 3.18
100 101 0.035820 GAGGCACCGGTACCAATCAA 60.036 55.000 25.97 0.00 0.00 2.57
101 102 1.600107 GAGGCACCGGTACCAATCA 59.400 57.895 25.97 0.00 0.00 2.57
102 103 1.520787 CGAGGCACCGGTACCAATC 60.521 63.158 25.97 14.20 0.00 2.67
103 104 2.582436 CGAGGCACCGGTACCAAT 59.418 61.111 25.97 5.91 0.00 3.16
104 105 3.697747 CCGAGGCACCGGTACCAA 61.698 66.667 25.97 0.00 44.23 3.67
116 117 3.213402 GACTCCGAGCCTCCGAGG 61.213 72.222 10.41 10.41 38.80 4.63
117 118 2.124487 AGACTCCGAGCCTCCGAG 60.124 66.667 8.30 8.30 0.00 4.63
118 119 2.438614 CAGACTCCGAGCCTCCGA 60.439 66.667 0.00 0.00 0.00 4.55
119 120 3.522731 CCAGACTCCGAGCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
120 121 2.363147 ACCAGACTCCGAGCCTCC 60.363 66.667 0.00 0.00 0.00 4.30
121 122 2.716017 CCACCAGACTCCGAGCCTC 61.716 68.421 0.00 0.00 0.00 4.70
122 123 2.681778 CCACCAGACTCCGAGCCT 60.682 66.667 0.00 0.00 0.00 4.58
123 124 3.775654 CCCACCAGACTCCGAGCC 61.776 72.222 0.00 0.00 0.00 4.70
124 125 2.680352 TCCCACCAGACTCCGAGC 60.680 66.667 0.00 0.00 0.00 5.03
125 126 0.396417 ATCTCCCACCAGACTCCGAG 60.396 60.000 0.00 0.00 0.00 4.63
126 127 0.395862 GATCTCCCACCAGACTCCGA 60.396 60.000 0.00 0.00 0.00 4.55
127 128 0.396417 AGATCTCCCACCAGACTCCG 60.396 60.000 0.00 0.00 0.00 4.63
128 129 1.408969 GAGATCTCCCACCAGACTCC 58.591 60.000 12.00 0.00 0.00 3.85
129 130 1.408969 GGAGATCTCCCACCAGACTC 58.591 60.000 28.84 1.61 43.94 3.36
130 131 0.396417 CGGAGATCTCCCACCAGACT 60.396 60.000 31.77 0.00 46.96 3.24
131 132 1.395826 CCGGAGATCTCCCACCAGAC 61.396 65.000 31.77 8.52 46.96 3.51
132 133 1.075970 CCGGAGATCTCCCACCAGA 60.076 63.158 31.77 0.00 46.96 3.86
133 134 1.381872 ACCGGAGATCTCCCACCAG 60.382 63.158 31.77 18.99 46.96 4.00
134 135 1.685765 CACCGGAGATCTCCCACCA 60.686 63.158 31.77 0.00 46.96 4.17
135 136 2.435693 CCACCGGAGATCTCCCACC 61.436 68.421 31.77 11.81 46.96 4.61
136 137 2.435693 CCCACCGGAGATCTCCCAC 61.436 68.421 31.77 11.31 46.96 4.61
137 138 2.041922 CCCACCGGAGATCTCCCA 60.042 66.667 31.77 0.00 46.96 4.37
138 139 2.041819 ACCCACCGGAGATCTCCC 60.042 66.667 31.77 16.66 46.96 4.30
139 140 3.095347 GCACCCACCGGAGATCTCC 62.095 68.421 29.15 29.15 46.18 3.71
140 141 2.303549 CTGCACCCACCGGAGATCTC 62.304 65.000 14.75 14.75 0.00 2.75
141 142 2.284625 TGCACCCACCGGAGATCT 60.285 61.111 9.46 0.00 0.00 2.75
142 143 2.187946 CTGCACCCACCGGAGATC 59.812 66.667 9.46 0.00 0.00 2.75
143 144 4.101448 GCTGCACCCACCGGAGAT 62.101 66.667 9.46 0.00 0.00 2.75
163 164 0.790814 GAAACGAAGAAGCCTCGTGG 59.209 55.000 0.00 0.00 40.16 4.94
164 165 1.784525 AGAAACGAAGAAGCCTCGTG 58.215 50.000 0.00 0.00 40.16 4.35
165 166 2.528041 AAGAAACGAAGAAGCCTCGT 57.472 45.000 0.00 0.00 42.20 4.18
166 167 2.544267 ACAAAGAAACGAAGAAGCCTCG 59.456 45.455 0.00 0.00 0.00 4.63
167 168 3.363084 CGACAAAGAAACGAAGAAGCCTC 60.363 47.826 0.00 0.00 0.00 4.70
168 169 2.544267 CGACAAAGAAACGAAGAAGCCT 59.456 45.455 0.00 0.00 0.00 4.58
169 170 2.542595 TCGACAAAGAAACGAAGAAGCC 59.457 45.455 0.00 0.00 33.20 4.35
170 171 3.854286 TCGACAAAGAAACGAAGAAGC 57.146 42.857 0.00 0.00 33.20 3.86
171 172 4.433022 CGGATCGACAAAGAAACGAAGAAG 60.433 45.833 0.00 0.00 39.38 2.85
172 173 3.427528 CGGATCGACAAAGAAACGAAGAA 59.572 43.478 0.00 0.00 39.38 2.52
173 174 2.984471 CGGATCGACAAAGAAACGAAGA 59.016 45.455 0.00 0.00 39.38 2.87
174 175 2.472397 GCGGATCGACAAAGAAACGAAG 60.472 50.000 0.00 0.00 39.38 3.79
175 176 1.458064 GCGGATCGACAAAGAAACGAA 59.542 47.619 0.00 0.00 39.38 3.85
176 177 1.065358 GCGGATCGACAAAGAAACGA 58.935 50.000 0.00 0.00 40.18 3.85
177 178 0.094730 GGCGGATCGACAAAGAAACG 59.905 55.000 0.00 0.00 33.63 3.60
178 179 1.153353 TGGCGGATCGACAAAGAAAC 58.847 50.000 0.00 0.00 44.01 2.78
179 180 3.616284 TGGCGGATCGACAAAGAAA 57.384 47.368 0.00 0.00 44.01 2.52
186 187 3.309675 CGACAATGGCGGATCGAC 58.690 61.111 0.00 0.00 36.70 4.20
195 196 1.001815 AGAAACAAACGCCGACAATGG 60.002 47.619 0.00 0.00 0.00 3.16
196 197 2.032030 AGAGAAACAAACGCCGACAATG 60.032 45.455 0.00 0.00 0.00 2.82
197 198 2.218603 AGAGAAACAAACGCCGACAAT 58.781 42.857 0.00 0.00 0.00 2.71
198 199 1.658994 AGAGAAACAAACGCCGACAA 58.341 45.000 0.00 0.00 0.00 3.18
199 200 1.329292 CAAGAGAAACAAACGCCGACA 59.671 47.619 0.00 0.00 0.00 4.35
200 201 1.329599 ACAAGAGAAACAAACGCCGAC 59.670 47.619 0.00 0.00 0.00 4.79
201 202 1.658994 ACAAGAGAAACAAACGCCGA 58.341 45.000 0.00 0.00 0.00 5.54
202 203 3.806316 ATACAAGAGAAACAAACGCCG 57.194 42.857 0.00 0.00 0.00 6.46
203 204 6.206498 AGAAAATACAAGAGAAACAAACGCC 58.794 36.000 0.00 0.00 0.00 5.68
204 205 7.132863 AGAGAAAATACAAGAGAAACAAACGC 58.867 34.615 0.00 0.00 0.00 4.84
205 206 9.503427 AAAGAGAAAATACAAGAGAAACAAACG 57.497 29.630 0.00 0.00 0.00 3.60
236 237 2.010582 GCACAGTCACGCCCCAAAAA 62.011 55.000 0.00 0.00 0.00 1.94
237 238 2.485795 GCACAGTCACGCCCCAAAA 61.486 57.895 0.00 0.00 0.00 2.44
238 239 2.904866 GCACAGTCACGCCCCAAA 60.905 61.111 0.00 0.00 0.00 3.28
239 240 3.872603 AGCACAGTCACGCCCCAA 61.873 61.111 0.00 0.00 0.00 4.12
240 241 4.624364 CAGCACAGTCACGCCCCA 62.624 66.667 0.00 0.00 0.00 4.96
242 243 4.996434 AGCAGCACAGTCACGCCC 62.996 66.667 0.00 0.00 0.00 6.13
243 244 2.959357 GAAGCAGCACAGTCACGCC 61.959 63.158 0.00 0.00 0.00 5.68
244 245 2.553268 GAAGCAGCACAGTCACGC 59.447 61.111 0.00 0.00 0.00 5.34
245 246 2.661566 CGGAAGCAGCACAGTCACG 61.662 63.158 0.00 0.00 0.00 4.35
246 247 3.248029 CGGAAGCAGCACAGTCAC 58.752 61.111 0.00 0.00 0.00 3.67
258 259 2.270874 AATAGGTGCTGGGGCGGAAG 62.271 60.000 0.00 0.00 42.25 3.46
259 260 2.305607 AATAGGTGCTGGGGCGGAA 61.306 57.895 0.00 0.00 42.25 4.30
260 261 2.690881 AATAGGTGCTGGGGCGGA 60.691 61.111 0.00 0.00 42.25 5.54
261 262 2.516930 CAATAGGTGCTGGGGCGG 60.517 66.667 0.00 0.00 42.25 6.13
262 263 1.378514 AACAATAGGTGCTGGGGCG 60.379 57.895 0.00 0.00 42.25 6.13
263 264 1.322538 CCAACAATAGGTGCTGGGGC 61.323 60.000 0.00 0.00 39.48 5.80
264 265 0.331278 TCCAACAATAGGTGCTGGGG 59.669 55.000 0.00 0.00 42.85 4.96
265 266 2.026641 CATCCAACAATAGGTGCTGGG 58.973 52.381 0.00 0.00 42.85 4.45
266 267 2.726821 ACATCCAACAATAGGTGCTGG 58.273 47.619 0.00 0.00 43.82 4.85
267 268 4.672542 CGAAACATCCAACAATAGGTGCTG 60.673 45.833 0.00 0.00 0.00 4.41
268 269 3.440173 CGAAACATCCAACAATAGGTGCT 59.560 43.478 0.00 0.00 0.00 4.40
269 270 3.758300 CGAAACATCCAACAATAGGTGC 58.242 45.455 0.00 0.00 0.00 5.01
270 271 3.440173 AGCGAAACATCCAACAATAGGTG 59.560 43.478 0.00 0.00 0.00 4.00
271 272 3.686016 AGCGAAACATCCAACAATAGGT 58.314 40.909 0.00 0.00 0.00 3.08
272 273 4.414852 CAAGCGAAACATCCAACAATAGG 58.585 43.478 0.00 0.00 0.00 2.57
273 274 4.082787 ACCAAGCGAAACATCCAACAATAG 60.083 41.667 0.00 0.00 0.00 1.73
274 275 3.823873 ACCAAGCGAAACATCCAACAATA 59.176 39.130 0.00 0.00 0.00 1.90
275 276 2.627699 ACCAAGCGAAACATCCAACAAT 59.372 40.909 0.00 0.00 0.00 2.71
276 277 2.028130 ACCAAGCGAAACATCCAACAA 58.972 42.857 0.00 0.00 0.00 2.83
277 278 1.686355 ACCAAGCGAAACATCCAACA 58.314 45.000 0.00 0.00 0.00 3.33
278 279 2.393764 CAACCAAGCGAAACATCCAAC 58.606 47.619 0.00 0.00 0.00 3.77
279 280 1.269517 GCAACCAAGCGAAACATCCAA 60.270 47.619 0.00 0.00 0.00 3.53
280 281 0.313672 GCAACCAAGCGAAACATCCA 59.686 50.000 0.00 0.00 0.00 3.41
281 282 0.598065 AGCAACCAAGCGAAACATCC 59.402 50.000 0.00 0.00 40.15 3.51
282 283 2.422276 AAGCAACCAAGCGAAACATC 57.578 45.000 0.00 0.00 40.15 3.06
283 284 2.159114 ACAAAGCAACCAAGCGAAACAT 60.159 40.909 0.00 0.00 40.15 2.71
284 285 1.203523 ACAAAGCAACCAAGCGAAACA 59.796 42.857 0.00 0.00 40.15 2.83
285 286 1.921243 ACAAAGCAACCAAGCGAAAC 58.079 45.000 0.00 0.00 40.15 2.78
286 287 4.276183 TGTATACAAAGCAACCAAGCGAAA 59.724 37.500 2.20 0.00 40.15 3.46
287 288 3.815962 TGTATACAAAGCAACCAAGCGAA 59.184 39.130 2.20 0.00 40.15 4.70
288 289 3.403968 TGTATACAAAGCAACCAAGCGA 58.596 40.909 2.20 0.00 40.15 4.93
289 290 3.822594 TGTATACAAAGCAACCAAGCG 57.177 42.857 2.20 0.00 40.15 4.68
300 301 4.456566 GGTTTCTCCCGCTTTGTATACAAA 59.543 41.667 25.48 25.48 42.90 2.83
301 302 4.004982 GGTTTCTCCCGCTTTGTATACAA 58.995 43.478 14.35 14.35 0.00 2.41
302 303 3.602483 GGTTTCTCCCGCTTTGTATACA 58.398 45.455 0.08 0.08 0.00 2.29
312 313 9.400168 TCAATATTGAAAAAGGGTTTCTCCCGC 62.400 40.741 15.82 0.00 46.91 6.13
313 314 6.071616 TCAATATTGAAAAAGGGTTTCTCCCG 60.072 38.462 15.82 0.00 46.91 5.14
314 315 7.039011 ACTCAATATTGAAAAAGGGTTTCTCCC 60.039 37.037 18.47 0.00 45.88 4.30
315 316 7.896811 ACTCAATATTGAAAAAGGGTTTCTCC 58.103 34.615 18.47 0.00 36.64 3.71
317 318 9.807921 TCTACTCAATATTGAAAAAGGGTTTCT 57.192 29.630 18.47 0.00 36.64 2.52
319 320 9.807921 TCTCTACTCAATATTGAAAAAGGGTTT 57.192 29.630 18.47 0.00 36.64 3.27
320 321 9.232473 GTCTCTACTCAATATTGAAAAAGGGTT 57.768 33.333 18.47 1.52 36.64 4.11
321 322 8.383175 TGTCTCTACTCAATATTGAAAAAGGGT 58.617 33.333 18.47 13.62 36.64 4.34
322 323 8.669243 GTGTCTCTACTCAATATTGAAAAAGGG 58.331 37.037 18.47 14.79 36.64 3.95
323 324 9.219603 TGTGTCTCTACTCAATATTGAAAAAGG 57.780 33.333 18.47 9.41 36.64 3.11
329 330 9.971922 CATGTATGTGTCTCTACTCAATATTGA 57.028 33.333 17.07 17.07 33.16 2.57
330 331 9.755804 ACATGTATGTGTCTCTACTCAATATTG 57.244 33.333 9.29 9.29 40.03 1.90
363 364 3.050619 AGTGTATGATAGCGCGCTTAAC 58.949 45.455 41.04 28.06 0.00 2.01
364 365 3.364889 AGTGTATGATAGCGCGCTTAA 57.635 42.857 41.04 23.97 0.00 1.85
365 366 3.364889 AAGTGTATGATAGCGCGCTTA 57.635 42.857 41.04 25.52 31.02 3.09
366 367 2.225068 AAGTGTATGATAGCGCGCTT 57.775 45.000 41.04 26.11 0.00 4.68
367 368 2.225068 AAAGTGTATGATAGCGCGCT 57.775 45.000 38.01 38.01 0.00 5.92
368 369 2.030457 ACAAAAGTGTATGATAGCGCGC 59.970 45.455 26.66 26.66 35.72 6.86
369 370 3.925688 ACAAAAGTGTATGATAGCGCG 57.074 42.857 0.00 0.00 35.72 6.86
370 371 5.490213 GTGTACAAAAGTGTATGATAGCGC 58.510 41.667 0.00 0.00 42.18 5.92
371 372 5.276207 CGGTGTACAAAAGTGTATGATAGCG 60.276 44.000 0.00 0.00 42.18 4.26
372 373 5.006358 CCGGTGTACAAAAGTGTATGATAGC 59.994 44.000 0.00 0.00 42.18 2.97
373 374 5.522460 CCCGGTGTACAAAAGTGTATGATAG 59.478 44.000 0.00 0.00 42.18 2.08
374 375 5.046448 ACCCGGTGTACAAAAGTGTATGATA 60.046 40.000 0.00 0.00 42.18 2.15
375 376 4.258543 CCCGGTGTACAAAAGTGTATGAT 58.741 43.478 0.00 0.00 42.18 2.45
376 377 3.071312 ACCCGGTGTACAAAAGTGTATGA 59.929 43.478 0.00 0.00 42.18 2.15
377 378 3.404899 ACCCGGTGTACAAAAGTGTATG 58.595 45.455 0.00 0.00 42.18 2.39
378 379 3.775261 ACCCGGTGTACAAAAGTGTAT 57.225 42.857 0.00 0.00 42.18 2.29
379 380 4.679373 TTACCCGGTGTACAAAAGTGTA 57.321 40.909 0.00 0.00 39.30 2.90
380 381 3.557228 TTACCCGGTGTACAAAAGTGT 57.443 42.857 0.00 0.00 42.09 3.55
396 397 6.259387 CGGAAGGGAGTACAATACAATTTACC 59.741 42.308 0.00 0.00 0.00 2.85
452 453 9.650539 CCATTGGTTATGAATTTACAATTCACA 57.349 29.630 12.91 0.51 40.37 3.58
544 549 6.820470 TTTTGTTGAACCGTCATGATTTTC 57.180 33.333 0.00 2.93 32.48 2.29
551 556 5.106442 GGAAACTTTTTGTTGAACCGTCAT 58.894 37.500 0.00 0.00 39.13 3.06
556 561 4.989044 TCTCGGAAACTTTTTGTTGAACC 58.011 39.130 0.00 0.00 39.13 3.62
560 565 4.932146 ACCATCTCGGAAACTTTTTGTTG 58.068 39.130 0.00 0.00 37.28 3.33
562 567 4.461198 AGACCATCTCGGAAACTTTTTGT 58.539 39.130 0.00 0.00 38.63 2.83
563 568 6.554334 TTAGACCATCTCGGAAACTTTTTG 57.446 37.500 0.00 0.00 38.63 2.44
590 595 5.240623 TCATTTGACCATGAACTTTTACGCT 59.759 36.000 0.00 0.00 29.81 5.07
592 597 6.434596 TGTCATTTGACCATGAACTTTTACG 58.565 36.000 8.16 0.00 44.15 3.18
594 599 7.807433 CGAATGTCATTTGACCATGAACTTTTA 59.193 33.333 6.96 0.00 44.15 1.52
640 653 8.723311 ACAATTGCCATATTCAAAGTTTCATTG 58.277 29.630 5.05 0.00 0.00 2.82
657 670 6.778834 AATATCATGTCTCAACAATTGCCA 57.221 33.333 5.05 0.00 39.30 4.92
664 677 9.681692 CACAAAAAGAAATATCATGTCTCAACA 57.318 29.630 0.00 0.00 40.38 3.33
673 686 9.912634 CACCACTTACACAAAAAGAAATATCAT 57.087 29.630 0.00 0.00 0.00 2.45
678 691 8.474025 TCATTCACCACTTACACAAAAAGAAAT 58.526 29.630 0.00 0.00 0.00 2.17
682 695 6.559810 TGTCATTCACCACTTACACAAAAAG 58.440 36.000 0.00 0.00 0.00 2.27
687 700 6.545666 AGAAAATGTCATTCACCACTTACACA 59.454 34.615 0.00 0.00 0.00 3.72
688 701 6.970484 AGAAAATGTCATTCACCACTTACAC 58.030 36.000 0.00 0.00 0.00 2.90
689 702 7.284261 TCAAGAAAATGTCATTCACCACTTACA 59.716 33.333 0.00 0.00 0.00 2.41
690 703 7.591426 GTCAAGAAAATGTCATTCACCACTTAC 59.409 37.037 0.00 0.00 0.00 2.34
691 704 7.284261 TGTCAAGAAAATGTCATTCACCACTTA 59.716 33.333 0.00 0.00 0.00 2.24
692 705 6.096705 TGTCAAGAAAATGTCATTCACCACTT 59.903 34.615 0.00 0.00 0.00 3.16
693 706 5.593909 TGTCAAGAAAATGTCATTCACCACT 59.406 36.000 0.00 0.00 0.00 4.00
694 707 5.830912 TGTCAAGAAAATGTCATTCACCAC 58.169 37.500 0.00 0.00 0.00 4.16
695 708 6.448852 CATGTCAAGAAAATGTCATTCACCA 58.551 36.000 0.00 0.00 28.67 4.17
696 709 5.346822 GCATGTCAAGAAAATGTCATTCACC 59.653 40.000 0.00 0.00 28.67 4.02
720 737 9.646336 GCCACATATAGAACTGTAAAATAAACG 57.354 33.333 0.00 0.00 0.00 3.60
723 740 9.899661 ACTGCCACATATAGAACTGTAAAATAA 57.100 29.630 0.00 0.00 0.00 1.40
726 743 7.494625 GCTACTGCCACATATAGAACTGTAAAA 59.505 37.037 0.00 0.00 0.00 1.52
728 745 6.097696 TGCTACTGCCACATATAGAACTGTAA 59.902 38.462 0.00 0.00 38.71 2.41
729 746 5.596772 TGCTACTGCCACATATAGAACTGTA 59.403 40.000 0.00 0.00 38.71 2.74
730 747 4.405680 TGCTACTGCCACATATAGAACTGT 59.594 41.667 0.00 0.00 38.71 3.55
731 748 4.747108 GTGCTACTGCCACATATAGAACTG 59.253 45.833 0.00 0.00 38.71 3.16
732 749 4.405680 TGTGCTACTGCCACATATAGAACT 59.594 41.667 0.00 0.00 38.71 3.01
733 750 4.693283 TGTGCTACTGCCACATATAGAAC 58.307 43.478 0.00 0.00 38.71 3.01
734 751 5.351948 TTGTGCTACTGCCACATATAGAA 57.648 39.130 0.00 0.00 38.71 2.10
735 752 5.116180 GTTTGTGCTACTGCCACATATAGA 58.884 41.667 0.00 0.00 38.71 1.98
736 753 4.025730 CGTTTGTGCTACTGCCACATATAG 60.026 45.833 0.00 0.00 38.71 1.31
739 756 2.073056 CGTTTGTGCTACTGCCACATA 58.927 47.619 0.00 0.00 38.71 2.29
740 757 0.874390 CGTTTGTGCTACTGCCACAT 59.126 50.000 0.00 0.00 38.71 3.21
742 759 0.941542 TTCGTTTGTGCTACTGCCAC 59.058 50.000 0.00 0.00 38.71 5.01
743 760 1.202592 TCTTCGTTTGTGCTACTGCCA 60.203 47.619 0.00 0.00 38.71 4.92
744 761 1.508632 TCTTCGTTTGTGCTACTGCC 58.491 50.000 0.00 0.00 38.71 4.85
745 762 3.289076 GTTTCTTCGTTTGTGCTACTGC 58.711 45.455 0.00 0.00 40.20 4.40
746 763 3.531982 CGTTTCTTCGTTTGTGCTACTG 58.468 45.455 0.00 0.00 0.00 2.74
747 764 2.033151 GCGTTTCTTCGTTTGTGCTACT 60.033 45.455 0.00 0.00 0.00 2.57
748 765 2.295696 GCGTTTCTTCGTTTGTGCTAC 58.704 47.619 0.00 0.00 0.00 3.58
803 1647 4.399303 GGGTTGACTGATTAATTGGGTGAG 59.601 45.833 0.00 0.00 0.00 3.51
804 1648 4.044065 AGGGTTGACTGATTAATTGGGTGA 59.956 41.667 0.00 0.00 0.00 4.02
805 1649 4.344104 AGGGTTGACTGATTAATTGGGTG 58.656 43.478 0.00 0.00 0.00 4.61
806 1650 4.675063 AGGGTTGACTGATTAATTGGGT 57.325 40.909 0.00 0.00 0.00 4.51
915 1759 0.465460 TGTGCCTCTGTGGTTTGGTC 60.465 55.000 0.00 0.00 38.35 4.02
932 1776 0.318699 CGTGTGGTCGTGTGATCTGT 60.319 55.000 0.00 0.00 0.00 3.41
937 1781 2.279186 CTGCGTGTGGTCGTGTGA 60.279 61.111 0.00 0.00 0.00 3.58
958 1802 2.490991 GCTAACCCGTTTGTCTTGAGT 58.509 47.619 0.00 0.00 0.00 3.41
1194 2044 4.338710 TGGTACAGCAACCCGGCC 62.339 66.667 0.00 0.00 38.90 6.13
1308 2158 2.036098 TCCGCGTAGAACCTGGGA 59.964 61.111 4.92 0.00 0.00 4.37
1533 2383 3.222855 ATCTCCCTCAGCGCCTCG 61.223 66.667 2.29 0.00 0.00 4.63
1660 2510 1.146263 CTCCGGGTAACATCAGGGC 59.854 63.158 0.00 0.00 39.74 5.19
1675 2526 1.671880 GCAGCGTACGTCGAAACTCC 61.672 60.000 17.90 0.00 42.86 3.85
1701 2552 6.295236 CCGGCATATGGAACCATTTGATTTAT 60.295 38.462 21.89 3.59 37.50 1.40
1702 2553 5.010516 CCGGCATATGGAACCATTTGATTTA 59.989 40.000 21.89 1.56 37.50 1.40
1703 2554 4.202243 CCGGCATATGGAACCATTTGATTT 60.202 41.667 21.89 0.00 37.50 2.17
1704 2555 3.321682 CCGGCATATGGAACCATTTGATT 59.678 43.478 21.89 0.00 37.50 2.57
1705 2556 2.892852 CCGGCATATGGAACCATTTGAT 59.107 45.455 21.89 5.41 37.50 2.57
1706 2557 2.305928 CCGGCATATGGAACCATTTGA 58.694 47.619 21.89 3.45 37.50 2.69
1707 2558 1.269726 GCCGGCATATGGAACCATTTG 60.270 52.381 24.80 14.28 38.05 2.32
1708 2559 1.039856 GCCGGCATATGGAACCATTT 58.960 50.000 24.80 1.35 37.82 2.32
1709 2560 1.172180 CGCCGGCATATGGAACCATT 61.172 55.000 28.98 0.00 37.82 3.16
1710 2561 1.600636 CGCCGGCATATGGAACCAT 60.601 57.895 28.98 11.20 40.19 3.55
1711 2562 2.203139 CGCCGGCATATGGAACCA 60.203 61.111 28.98 0.00 0.00 3.67
1712 2563 3.660111 GCGCCGGCATATGGAACC 61.660 66.667 28.98 0.00 39.62 3.62
1713 2564 4.012895 CGCGCCGGCATATGGAAC 62.013 66.667 28.98 3.46 39.92 3.62
1714 2565 3.741830 TTCGCGCCGGCATATGGAA 62.742 57.895 28.98 17.67 39.92 3.53
1715 2566 3.741830 TTTCGCGCCGGCATATGGA 62.742 57.895 28.98 12.44 39.92 3.41
1716 2567 2.329678 TTTTTCGCGCCGGCATATGG 62.330 55.000 28.98 10.97 39.92 2.74
1717 2568 0.929824 CTTTTTCGCGCCGGCATATG 60.930 55.000 28.98 11.41 39.92 1.78
1718 2569 1.092921 TCTTTTTCGCGCCGGCATAT 61.093 50.000 28.98 0.00 39.92 1.78
1719 2570 1.092921 ATCTTTTTCGCGCCGGCATA 61.093 50.000 28.98 7.90 39.92 3.14
1720 2571 2.406616 ATCTTTTTCGCGCCGGCAT 61.407 52.632 28.98 5.67 39.92 4.40
1721 2572 3.053291 ATCTTTTTCGCGCCGGCA 61.053 55.556 28.98 3.37 39.92 5.69
1722 2573 2.576847 CATCTTTTTCGCGCCGGC 60.577 61.111 19.07 19.07 0.00 6.13
1723 2574 2.100216 CCATCTTTTTCGCGCCGG 59.900 61.111 0.00 0.00 0.00 6.13
1724 2575 2.576847 GCCATCTTTTTCGCGCCG 60.577 61.111 0.00 0.00 0.00 6.46
1725 2576 2.202610 GGCCATCTTTTTCGCGCC 60.203 61.111 0.00 0.00 0.00 6.53
1726 2577 2.576847 CGGCCATCTTTTTCGCGC 60.577 61.111 2.24 0.00 0.00 6.86
1727 2578 1.226018 GACGGCCATCTTTTTCGCG 60.226 57.895 2.24 0.00 0.00 5.87
1728 2579 1.226018 CGACGGCCATCTTTTTCGC 60.226 57.895 2.24 0.00 0.00 4.70
1767 2643 5.717078 ACATGATATGCCATGAACAATCC 57.283 39.130 10.51 0.00 44.98 3.01
1771 2647 3.068448 GCCAACATGATATGCCATGAACA 59.932 43.478 10.51 0.00 44.98 3.18
1827 2716 8.087136 GGACATGTTTAGGTACTACTATAAGCC 58.913 40.741 0.00 0.00 42.67 4.35
1850 2741 4.449131 TGATCAAGAGATGCATGAAGGAC 58.551 43.478 2.46 0.00 33.72 3.85
1855 2746 5.865085 TGATGATGATCAAGAGATGCATGA 58.135 37.500 2.46 0.00 35.55 3.07
1867 2758 3.619929 CACAAACGAGCTGATGATGATCA 59.380 43.478 0.00 0.00 37.07 2.92
2033 2925 3.111853 TGCACAGGAAGAACAGTACTG 57.888 47.619 21.44 21.44 35.40 2.74
2047 2941 4.037923 ACCTGAAATGGTTAGTTTGCACAG 59.962 41.667 0.00 0.00 36.89 3.66
2067 2961 7.148137 CCGGTAGCATTTTAACAAGATTAACCT 60.148 37.037 0.00 0.00 0.00 3.50
2068 2962 6.970613 CCGGTAGCATTTTAACAAGATTAACC 59.029 38.462 0.00 0.00 0.00 2.85
2072 2966 7.316544 CTACCGGTAGCATTTTAACAAGATT 57.683 36.000 27.93 0.00 0.00 2.40
2089 2983 0.601841 CCACACTTTTCGCTACCGGT 60.602 55.000 13.98 13.98 34.56 5.28
2090 2984 1.908066 GCCACACTTTTCGCTACCGG 61.908 60.000 0.00 0.00 34.56 5.28
2092 2986 1.873863 GGCCACACTTTTCGCTACC 59.126 57.895 0.00 0.00 0.00 3.18
2093 2987 0.947180 TCGGCCACACTTTTCGCTAC 60.947 55.000 2.24 0.00 0.00 3.58
2094 2988 0.947180 GTCGGCCACACTTTTCGCTA 60.947 55.000 2.24 0.00 0.00 4.26
2095 2989 2.110213 TCGGCCACACTTTTCGCT 59.890 55.556 2.24 0.00 0.00 4.93
2096 2990 2.251371 GTCGGCCACACTTTTCGC 59.749 61.111 2.24 0.00 0.00 4.70
2097 2991 1.890041 TGGTCGGCCACACTTTTCG 60.890 57.895 3.51 0.00 40.46 3.46
2098 2992 4.150994 TGGTCGGCCACACTTTTC 57.849 55.556 3.51 0.00 40.46 2.29
2110 3004 8.055335 TTTGTATACAAGTAGTGACCATGGTCG 61.055 40.741 34.01 22.26 41.23 4.79
2113 3007 7.103641 ACTTTGTATACAAGTAGTGACCATGG 58.896 38.462 18.05 11.19 37.15 3.66
2120 3014 6.522761 GCACGAACTTTGTATACAAGTAGTG 58.477 40.000 26.28 26.28 37.15 2.74
2144 3038 6.435428 ACCAAAGTTACAAAAGTATTCTGCG 58.565 36.000 0.00 0.00 0.00 5.18
2510 3404 2.125512 AGCGCCACGGAGATGAAC 60.126 61.111 2.29 0.00 0.00 3.18
2834 3731 2.715624 GGCCGCGGATTCATGAAC 59.284 61.111 33.48 7.28 0.00 3.18
3060 3957 4.776322 TGTCCGGCCAGGCAATCG 62.776 66.667 15.19 7.76 40.77 3.34
3178 4088 7.926555 GTGCACCAGTACATTGTAGATTACTAT 59.073 37.037 5.22 0.00 0.00 2.12
3181 4091 5.005394 CGTGCACCAGTACATTGTAGATTAC 59.995 44.000 12.15 0.00 0.00 1.89
3182 4092 5.106442 CGTGCACCAGTACATTGTAGATTA 58.894 41.667 12.15 0.00 0.00 1.75
3221 4131 4.722700 GCTTCCCCGGCTTCTGCA 62.723 66.667 0.00 0.00 41.91 4.41
3402 4312 1.445095 GAGCTGCCCAGTGATCGAT 59.555 57.895 0.00 0.00 0.00 3.59
3508 4418 8.514330 ACACTTTGGAGTACTGATTTGTTTTA 57.486 30.769 0.00 0.00 33.90 1.52
3513 4423 6.347725 GCACTACACTTTGGAGTACTGATTTG 60.348 42.308 0.00 0.00 40.18 2.32
3546 4461 7.939588 TGCAGATAGTCTTAGCAGTATCTCTTA 59.060 37.037 6.26 0.00 37.05 2.10
3557 4472 2.224378 TGGCCATGCAGATAGTCTTAGC 60.224 50.000 0.00 0.00 0.00 3.09
3558 4473 3.758755 TGGCCATGCAGATAGTCTTAG 57.241 47.619 0.00 0.00 0.00 2.18
3559 4474 3.711190 TCTTGGCCATGCAGATAGTCTTA 59.289 43.478 6.09 0.00 0.00 2.10
3581 4496 1.470979 CGCAGGTAATAAGCGTGGACT 60.471 52.381 0.00 0.00 45.82 3.85
3702 4617 6.188400 TCTGTTATCTAGCTGCATATCTCG 57.812 41.667 1.02 0.00 0.00 4.04
3718 4637 6.637254 CGACGTACTAATTGCAGATCTGTTAT 59.363 38.462 23.38 13.95 0.00 1.89
3719 4638 5.969435 CGACGTACTAATTGCAGATCTGTTA 59.031 40.000 23.38 13.12 0.00 2.41
3731 4651 2.167075 CCCCAACTCCGACGTACTAATT 59.833 50.000 0.00 0.00 0.00 1.40
3780 4700 0.460284 GTGCTCATGTACCTGTCCGG 60.460 60.000 0.00 0.00 39.35 5.14
3820 4740 1.133792 CCAAAGGATACCATTCCCGCT 60.134 52.381 0.00 0.00 36.35 5.52
4002 4951 1.750399 CCATGCTGCCACAGGGTAC 60.750 63.158 0.00 0.00 36.74 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.