Multiple sequence alignment - TraesCS4B01G281700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G281700 chr4B 100.000 3957 0 0 1 3957 564865487 564869443 0.000000e+00 7308.0
1 TraesCS4B01G281700 chr4B 76.667 150 29 4 548 691 660947280 660947131 1.180000e-10 78.7
2 TraesCS4B01G281700 chr4A 91.793 3156 143 35 544 3629 15655487 15652378 0.000000e+00 4287.0
3 TraesCS4B01G281700 chr4A 87.860 486 48 5 25 499 15657377 15656892 9.600000e-156 560.0
4 TraesCS4B01G281700 chr4A 89.583 48 3 2 458 504 94767765 94767811 4.270000e-05 60.2
5 TraesCS4B01G281700 chr4D 92.966 1706 50 30 697 2372 451279108 451280773 0.000000e+00 2422.0
6 TraesCS4B01G281700 chr4D 89.542 1377 68 27 2365 3685 451280796 451282152 0.000000e+00 1676.0
7 TraesCS4B01G281700 chr4D 77.551 245 44 8 454 691 18200257 18200497 1.920000e-28 137.0
8 TraesCS4B01G281700 chr7A 76.289 679 106 27 1989 2645 61491044 61490399 1.070000e-80 311.0
9 TraesCS4B01G281700 chr7A 75.994 679 108 30 1989 2645 109228101 109227456 2.310000e-77 300.0
10 TraesCS4B01G281700 chr1D 78.059 237 44 6 458 687 307466843 307466608 4.120000e-30 143.0
11 TraesCS4B01G281700 chr3B 78.866 194 40 1 1021 1213 212889142 212888949 3.210000e-26 130.0
12 TraesCS4B01G281700 chr3B 88.158 76 7 2 617 691 631493987 631494061 5.450000e-14 89.8
13 TraesCS4B01G281700 chr3B 100.000 29 0 0 574 602 171165499 171165471 2.000000e-03 54.7
14 TraesCS4B01G281700 chr7D 76.860 242 46 8 458 691 84247621 84247382 1.150000e-25 128.0
15 TraesCS4B01G281700 chr7D 78.862 123 17 6 575 691 409176110 409175991 1.530000e-09 75.0
16 TraesCS4B01G281700 chr5D 79.058 191 36 4 1026 1213 503669782 503669971 1.150000e-25 128.0
17 TraesCS4B01G281700 chr5D 82.963 135 21 2 451 584 565781234 565781367 1.930000e-23 121.0
18 TraesCS4B01G281700 chr5A 79.058 191 36 4 1026 1213 631664332 631664521 1.150000e-25 128.0
19 TraesCS4B01G281700 chr5A 78.832 137 22 7 454 587 547820352 547820484 7.050000e-13 86.1
20 TraesCS4B01G281700 chr5B 79.330 179 35 2 1021 1198 632152864 632153041 1.490000e-24 124.0
21 TraesCS4B01G281700 chr2D 77.372 137 28 3 458 593 546929978 546930112 1.180000e-10 78.7
22 TraesCS4B01G281700 chr3A 76.471 136 22 8 454 584 579053634 579053764 9.180000e-07 65.8
23 TraesCS4B01G281700 chr2B 83.333 72 11 1 541 611 614982524 614982453 9.180000e-07 65.8
24 TraesCS4B01G281700 chr1B 87.719 57 6 1 450 506 480818449 480818504 9.180000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G281700 chr4B 564865487 564869443 3956 False 7308.0 7308 100.0000 1 3957 1 chr4B.!!$F1 3956
1 TraesCS4B01G281700 chr4A 15652378 15657377 4999 True 2423.5 4287 89.8265 25 3629 2 chr4A.!!$R1 3604
2 TraesCS4B01G281700 chr4D 451279108 451282152 3044 False 2049.0 2422 91.2540 697 3685 2 chr4D.!!$F2 2988
3 TraesCS4B01G281700 chr7A 61490399 61491044 645 True 311.0 311 76.2890 1989 2645 1 chr7A.!!$R1 656
4 TraesCS4B01G281700 chr7A 109227456 109228101 645 True 300.0 300 75.9940 1989 2645 1 chr7A.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 2072 0.032403 TGCAAGCACCAATGTCAAGC 59.968 50.0 0.0 0.0 0.0 4.01 F
1251 2650 0.105039 CTTCCCATCCAGTCGTAGCC 59.895 60.0 0.0 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2596 4070 0.097674 CCGAAGCTTCAGAAATGCGG 59.902 55.0 25.47 14.99 0.0 5.69 R
3034 4535 0.243907 TCCTGCGTTCTTCTCTTCGG 59.756 55.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.085555 GGACCGATAGAGATATGTGTTTGA 57.914 41.667 0.00 0.00 39.76 2.69
39 40 2.812011 GTTTGATGGCTAAACACGTCCT 59.188 45.455 0.00 0.00 37.82 3.85
40 41 2.851263 TGATGGCTAAACACGTCCTT 57.149 45.000 0.00 0.00 0.00 3.36
51 54 2.511659 ACACGTCCTTAGTGCAGTCTA 58.488 47.619 0.00 0.00 42.94 2.59
59 62 3.502920 CTTAGTGCAGTCTAGACGGTTG 58.497 50.000 21.72 14.07 36.20 3.77
61 64 1.000163 AGTGCAGTCTAGACGGTTGTG 60.000 52.381 21.72 13.41 36.20 3.33
62 65 1.037493 TGCAGTCTAGACGGTTGTGT 58.963 50.000 21.72 0.00 36.20 3.72
70 73 0.586319 AGACGGTTGTGTGCGATTTG 59.414 50.000 0.00 0.00 0.00 2.32
79 82 2.435938 TGCGATTTGAGGGTCCGC 60.436 61.111 0.00 0.00 45.28 5.54
84 87 2.352388 CGATTTGAGGGTCCGCTTTAA 58.648 47.619 0.00 0.00 0.00 1.52
86 89 3.377172 CGATTTGAGGGTCCGCTTTAAAT 59.623 43.478 0.00 7.02 0.00 1.40
89 92 6.425721 CGATTTGAGGGTCCGCTTTAAATATA 59.574 38.462 0.00 0.00 0.00 0.86
93 96 3.717913 AGGGTCCGCTTTAAATATACCCA 59.282 43.478 21.17 0.00 46.20 4.51
94 97 4.166531 AGGGTCCGCTTTAAATATACCCAA 59.833 41.667 21.17 0.00 46.20 4.12
118 121 7.865706 AACGCCATACATTCTCTAAAGATTT 57.134 32.000 0.00 0.00 0.00 2.17
123 126 7.936301 GCCATACATTCTCTAAAGATTTCCTCT 59.064 37.037 0.00 0.00 34.96 3.69
134 137 6.553953 AAAGATTTCCTCTTAGTCTCCTCC 57.446 41.667 0.00 0.00 43.60 4.30
138 141 1.854280 TCCTCTTAGTCTCCTCCCTCC 59.146 57.143 0.00 0.00 0.00 4.30
155 158 3.305608 CCCTCCAGCATTTGTCTTTTGTC 60.306 47.826 0.00 0.00 0.00 3.18
156 159 3.318839 CCTCCAGCATTTGTCTTTTGTCA 59.681 43.478 0.00 0.00 0.00 3.58
170 175 8.523523 TGTCTTTTGTCATGCTTTTCATTATG 57.476 30.769 0.00 0.00 31.79 1.90
209 215 9.528018 TGGATTTTAAGCTTGTTTTTAGAACTG 57.472 29.630 9.86 0.00 0.00 3.16
223 229 7.452880 TTTTAGAACTGTAGCATTGCTGATT 57.547 32.000 21.31 9.42 40.10 2.57
229 235 3.333804 TGTAGCATTGCTGATTTCACGA 58.666 40.909 21.31 0.00 40.10 4.35
240 246 4.201763 GCTGATTTCACGACATTTCCTCTC 60.202 45.833 0.00 0.00 0.00 3.20
250 256 5.817816 ACGACATTTCCTCTCCATTATCAAC 59.182 40.000 0.00 0.00 0.00 3.18
272 278 5.875930 ACGTAGCTACCACAAATTATTTGC 58.124 37.500 18.16 2.83 44.39 3.68
273 279 5.413213 ACGTAGCTACCACAAATTATTTGCA 59.587 36.000 18.16 0.71 44.39 4.08
277 283 5.925969 AGCTACCACAAATTATTTGCAACAC 59.074 36.000 16.57 3.90 44.39 3.32
279 285 6.089417 GCTACCACAAATTATTTGCAACACTC 59.911 38.462 16.57 0.00 44.39 3.51
282 288 7.145323 ACCACAAATTATTTGCAACACTCTAC 58.855 34.615 16.57 0.00 44.39 2.59
345 353 6.648192 ACTCTATGAGTGATTTTGAAGGAGG 58.352 40.000 0.00 0.00 41.76 4.30
346 354 5.994250 TCTATGAGTGATTTTGAAGGAGGG 58.006 41.667 0.00 0.00 0.00 4.30
419 431 4.255833 TGGACAAAATCATCCAACTTGC 57.744 40.909 0.00 0.00 42.14 4.01
421 433 4.022068 TGGACAAAATCATCCAACTTGCTC 60.022 41.667 0.00 0.00 42.14 4.26
426 438 7.486647 ACAAAATCATCCAACTTGCTCATATC 58.513 34.615 0.00 0.00 0.00 1.63
427 439 7.123098 ACAAAATCATCCAACTTGCTCATATCA 59.877 33.333 0.00 0.00 0.00 2.15
430 442 4.571984 TCATCCAACTTGCTCATATCAACG 59.428 41.667 0.00 0.00 0.00 4.10
452 464 1.212751 GCCGGGTTCAAAGTCATGC 59.787 57.895 2.18 0.00 0.00 4.06
456 468 2.351738 CCGGGTTCAAAGTCATGCTTTC 60.352 50.000 10.84 3.09 44.95 2.62
457 469 2.554032 CGGGTTCAAAGTCATGCTTTCT 59.446 45.455 10.84 0.00 44.95 2.52
474 486 9.081997 CATGCTTTCTTTTAACACAGTACAAAA 57.918 29.630 0.00 0.00 0.00 2.44
495 507 2.809446 GCAGACGCTCATACATACACA 58.191 47.619 0.00 0.00 34.30 3.72
499 511 5.519722 CAGACGCTCATACATACACACATA 58.480 41.667 0.00 0.00 0.00 2.29
500 512 5.399596 CAGACGCTCATACATACACACATAC 59.600 44.000 0.00 0.00 0.00 2.39
501 513 5.067283 AGACGCTCATACATACACACATACA 59.933 40.000 0.00 0.00 0.00 2.29
503 515 6.280643 ACGCTCATACATACACACATACATT 58.719 36.000 0.00 0.00 0.00 2.71
504 516 6.420903 ACGCTCATACATACACACATACATTC 59.579 38.462 0.00 0.00 0.00 2.67
505 517 6.420604 CGCTCATACATACACACATACATTCA 59.579 38.462 0.00 0.00 0.00 2.57
506 518 7.116805 CGCTCATACATACACACATACATTCAT 59.883 37.037 0.00 0.00 0.00 2.57
508 520 9.702494 CTCATACATACACACATACATTCATCT 57.298 33.333 0.00 0.00 0.00 2.90
514 526 9.048446 CATACACACATACATTCATCTTCATGA 57.952 33.333 0.00 0.00 37.24 3.07
529 541 9.440773 TCATCTTCATGAATATAGGTAATGCAC 57.559 33.333 8.96 0.00 35.99 4.57
539 551 9.502091 GAATATAGGTAATGCACATTCTACCAA 57.498 33.333 14.68 3.96 33.76 3.67
549 561 6.288294 TGCACATTCTACCAATATGAGTACC 58.712 40.000 0.00 0.00 0.00 3.34
550 562 6.099701 TGCACATTCTACCAATATGAGTACCT 59.900 38.462 0.00 0.00 0.00 3.08
551 563 6.992715 GCACATTCTACCAATATGAGTACCTT 59.007 38.462 0.00 0.00 0.00 3.50
558 1939 5.202004 ACCAATATGAGTACCTTCGAGAGT 58.798 41.667 0.00 0.00 0.00 3.24
561 1942 6.183360 CCAATATGAGTACCTTCGAGAGTTGA 60.183 42.308 0.00 0.00 0.00 3.18
565 1946 1.544691 GTACCTTCGAGAGTTGAGCCA 59.455 52.381 0.00 0.00 0.00 4.75
566 1947 1.270907 ACCTTCGAGAGTTGAGCCAT 58.729 50.000 0.00 0.00 0.00 4.40
575 1956 4.447054 CGAGAGTTGAGCCATCACATTATC 59.553 45.833 0.00 0.00 34.35 1.75
580 1961 5.821470 AGTTGAGCCATCACATTATCTTGAG 59.179 40.000 0.00 0.00 34.35 3.02
586 1967 7.232188 AGCCATCACATTATCTTGAGATTGAT 58.768 34.615 0.00 0.23 36.05 2.57
587 1968 8.380867 AGCCATCACATTATCTTGAGATTGATA 58.619 33.333 0.00 0.00 36.05 2.15
598 1979 6.768483 TCTTGAGATTGATAAAGTCACCACA 58.232 36.000 0.00 0.00 36.32 4.17
599 1980 6.875726 TCTTGAGATTGATAAAGTCACCACAG 59.124 38.462 0.00 0.00 36.32 3.66
600 1981 6.358974 TGAGATTGATAAAGTCACCACAGA 57.641 37.500 0.00 0.00 36.32 3.41
601 1982 6.166279 TGAGATTGATAAAGTCACCACAGAC 58.834 40.000 0.00 0.00 36.32 3.51
602 1983 6.114187 AGATTGATAAAGTCACCACAGACA 57.886 37.500 0.00 0.00 40.98 3.41
603 1984 5.934625 AGATTGATAAAGTCACCACAGACAC 59.065 40.000 0.00 0.00 40.98 3.67
604 1985 4.002906 TGATAAAGTCACCACAGACACC 57.997 45.455 0.00 0.00 40.98 4.16
606 1987 4.102524 TGATAAAGTCACCACAGACACCTT 59.897 41.667 0.00 0.00 40.98 3.50
607 1988 3.366052 AAAGTCACCACAGACACCTTT 57.634 42.857 0.00 0.00 40.98 3.11
608 1989 2.332063 AGTCACCACAGACACCTTTG 57.668 50.000 0.00 0.00 40.98 2.77
609 1990 1.559682 AGTCACCACAGACACCTTTGT 59.440 47.619 0.00 0.00 40.98 2.83
612 1993 4.591498 AGTCACCACAGACACCTTTGTATA 59.409 41.667 0.00 0.00 40.98 1.47
622 2003 7.281549 ACAGACACCTTTGTATAAAAACGTCTT 59.718 33.333 7.29 0.00 35.47 3.01
626 2007 8.340443 ACACCTTTGTATAAAAACGTCTTCTTC 58.660 33.333 0.00 0.00 32.60 2.87
627 2008 7.801783 CACCTTTGTATAAAAACGTCTTCTTCC 59.198 37.037 0.00 0.00 0.00 3.46
632 2013 5.941948 ATAAAAACGTCTTCTTCCACTGG 57.058 39.130 0.00 0.00 0.00 4.00
634 2015 2.528041 AACGTCTTCTTCCACTGGAC 57.472 50.000 0.00 0.00 0.00 4.02
642 2023 2.107366 TCTTCCACTGGACGCATATCA 58.893 47.619 0.00 0.00 0.00 2.15
643 2024 2.159099 TCTTCCACTGGACGCATATCAC 60.159 50.000 0.00 0.00 0.00 3.06
644 2025 1.190643 TCCACTGGACGCATATCACA 58.809 50.000 0.00 0.00 0.00 3.58
645 2026 1.762370 TCCACTGGACGCATATCACAT 59.238 47.619 0.00 0.00 0.00 3.21
650 2031 4.212004 CACTGGACGCATATCACATAAAGG 59.788 45.833 0.00 0.00 0.00 3.11
654 2035 3.141398 ACGCATATCACATAAAGGCCTG 58.859 45.455 5.69 0.00 0.00 4.85
669 2050 4.051661 AGGCCTGAAATGAATCCAGAAA 57.948 40.909 3.11 0.00 0.00 2.52
675 2056 6.167685 CCTGAAATGAATCCAGAAAAATGCA 58.832 36.000 0.00 0.00 0.00 3.96
685 2066 3.187637 CCAGAAAAATGCAAGCACCAATG 59.812 43.478 0.00 0.00 0.00 2.82
691 2072 0.032403 TGCAAGCACCAATGTCAAGC 59.968 50.000 0.00 0.00 0.00 4.01
692 2073 0.668401 GCAAGCACCAATGTCAAGCC 60.668 55.000 0.00 0.00 0.00 4.35
823 2211 7.650834 TGCAAAATAGATAAAACCAGCAAAC 57.349 32.000 0.00 0.00 0.00 2.93
882 2278 4.733542 ACAATTCCCCGCCACCCG 62.734 66.667 0.00 0.00 0.00 5.28
1205 2604 2.439507 ACGATGGATTCAGTAATGCCCT 59.560 45.455 0.00 0.00 32.76 5.19
1206 2605 3.070018 CGATGGATTCAGTAATGCCCTC 58.930 50.000 0.00 0.00 32.76 4.30
1208 2607 2.204463 TGGATTCAGTAATGCCCTCCA 58.796 47.619 4.69 4.69 32.76 3.86
1213 2612 2.006991 AGTAATGCCCTCCACCCCC 61.007 63.158 0.00 0.00 0.00 5.40
1245 2644 0.179134 CGTCGTCTTCCCATCCAGTC 60.179 60.000 0.00 0.00 0.00 3.51
1249 2648 1.065701 CGTCTTCCCATCCAGTCGTAG 59.934 57.143 0.00 0.00 0.00 3.51
1250 2649 1.112113 TCTTCCCATCCAGTCGTAGC 58.888 55.000 0.00 0.00 0.00 3.58
1251 2650 0.105039 CTTCCCATCCAGTCGTAGCC 59.895 60.000 0.00 0.00 0.00 3.93
1252 2651 0.325296 TTCCCATCCAGTCGTAGCCT 60.325 55.000 0.00 0.00 0.00 4.58
1253 2652 1.043116 TCCCATCCAGTCGTAGCCTG 61.043 60.000 0.00 0.00 0.00 4.85
1254 2653 1.227380 CCATCCAGTCGTAGCCTGC 60.227 63.158 0.00 0.00 0.00 4.85
1255 2654 1.589993 CATCCAGTCGTAGCCTGCG 60.590 63.158 0.00 0.00 0.00 5.18
1256 2655 2.052690 ATCCAGTCGTAGCCTGCGT 61.053 57.895 1.31 0.00 0.00 5.24
1257 2656 1.605058 ATCCAGTCGTAGCCTGCGTT 61.605 55.000 1.31 0.00 0.00 4.84
1258 2657 2.094659 CCAGTCGTAGCCTGCGTTG 61.095 63.158 1.31 2.61 0.00 4.10
1259 2658 1.080772 CAGTCGTAGCCTGCGTTGA 60.081 57.895 1.31 0.00 0.00 3.18
1260 2659 0.458543 CAGTCGTAGCCTGCGTTGAT 60.459 55.000 1.31 0.00 0.00 2.57
1261 2660 0.179134 AGTCGTAGCCTGCGTTGATC 60.179 55.000 1.31 0.00 0.00 2.92
1262 2661 1.226575 TCGTAGCCTGCGTTGATCG 60.227 57.895 1.31 0.00 43.12 3.69
1271 2670 4.297071 CGTTGATCGCCGTCGTAT 57.703 55.556 0.00 0.00 36.96 3.06
1272 2671 2.573802 CGTTGATCGCCGTCGTATT 58.426 52.632 0.00 0.00 36.96 1.89
1300 2699 1.947146 TGCGTTCACGTGTTCTCGG 60.947 57.895 16.51 1.74 42.22 4.63
1312 2711 2.867855 TTCTCGGTCGCTGGTTGCT 61.868 57.895 0.00 0.00 40.11 3.91
1314 2713 4.373116 TCGGTCGCTGGTTGCTCC 62.373 66.667 0.00 0.00 40.11 4.70
1452 2851 5.711976 ACTTTGTTGGCTTGATGCTTACTAT 59.288 36.000 0.00 0.00 42.39 2.12
1614 3013 4.930963 TGCAAAACAGTCTTACATTGTGG 58.069 39.130 0.00 0.00 0.00 4.17
1622 3021 2.232941 GTCTTACATTGTGGGACGGAGA 59.767 50.000 0.00 0.00 0.00 3.71
1710 3109 2.038952 TGTGATACCTGACTTGCTTGCT 59.961 45.455 0.00 0.00 0.00 3.91
1714 3113 0.386838 ACCTGACTTGCTTGCTTTGC 59.613 50.000 0.00 0.00 0.00 3.68
1782 3181 8.168790 TGGTTATCATGATAATGTTGTGATGG 57.831 34.615 26.66 0.00 35.90 3.51
1793 3192 0.988832 TTGTGATGGGTAGGGTGGTC 59.011 55.000 0.00 0.00 0.00 4.02
1803 3202 4.250305 GGGTGGTCACTGCCGTGT 62.250 66.667 8.20 0.00 41.89 4.49
1805 3204 2.203015 GTGGTCACTGCCGTGTGT 60.203 61.111 8.20 0.00 41.89 3.72
1917 3323 3.899734 TGGAATCGCACACAAGAAATTG 58.100 40.909 0.00 0.00 0.00 2.32
2013 3428 4.686091 TCTTTCTGTTGATAACTCACTGCG 59.314 41.667 0.00 0.00 0.00 5.18
2022 3437 4.447724 TGATAACTCACTGCGTTCTGTTTC 59.552 41.667 0.00 0.00 0.00 2.78
2338 3760 9.887629 AGCAAGTCTCATCTTATCATATAATGG 57.112 33.333 0.00 0.00 0.00 3.16
2339 3761 9.107177 GCAAGTCTCATCTTATCATATAATGGG 57.893 37.037 0.00 0.00 0.00 4.00
2596 4070 4.013728 AGTCTGATAGTGATCCCTATCGC 58.986 47.826 17.17 11.33 44.11 4.58
2597 4071 3.129638 GTCTGATAGTGATCCCTATCGCC 59.870 52.174 17.17 6.73 44.11 5.54
2731 4220 6.015856 GCTCACAGGTATCATATACTCACACT 60.016 42.308 0.00 0.00 0.00 3.55
2734 4223 7.229506 TCACAGGTATCATATACTCACACTCAG 59.770 40.741 0.00 0.00 0.00 3.35
3024 4525 5.365021 ACTGCTATAGCCTTCAGTTTGAT 57.635 39.130 21.84 0.00 41.18 2.57
3034 4535 2.617250 TCAGTTTGATGTCGCATTGC 57.383 45.000 0.00 0.00 0.00 3.56
3047 4548 1.201965 CGCATTGCCGAAGAGAAGAAC 60.202 52.381 2.41 0.00 0.00 3.01
3089 4595 0.535335 AATTGAAGGGCATGCTGCTG 59.465 50.000 18.92 0.00 44.28 4.41
3126 4632 2.372350 CGCTGTTTCCGAGAAAACAAC 58.628 47.619 10.49 6.72 45.67 3.32
3141 4647 2.370281 ACAACCACATAGAGAGTGCG 57.630 50.000 0.00 0.00 35.69 5.34
3153 4660 0.320771 AGAGTGCGTCACCATCAACC 60.321 55.000 6.39 0.00 34.49 3.77
3162 4669 3.487202 CCATCAACCGCGTCGTGG 61.487 66.667 23.03 23.03 39.41 4.94
3173 4680 1.146358 GCGTCGTGGTGCTAGAATCC 61.146 60.000 0.00 0.00 0.00 3.01
3254 4765 4.564821 GGTCCCAAGGCTCGCAATATATAA 60.565 45.833 0.00 0.00 0.00 0.98
3255 4766 4.392138 GTCCCAAGGCTCGCAATATATAAC 59.608 45.833 0.00 0.00 0.00 1.89
3271 4784 8.509690 CAATATATAACAGAGTCAATGCCCAAG 58.490 37.037 0.00 0.00 0.00 3.61
3350 4863 1.009829 GCTGCAATTCCGTACAGAGG 58.990 55.000 0.00 0.00 31.67 3.69
3378 4892 3.071457 TCTTCCTGAACATGCTTCTGTGA 59.929 43.478 0.00 0.00 0.00 3.58
3423 4937 5.819825 GAGCATCTTACCTTTTTGTAGGG 57.180 43.478 0.00 0.00 39.76 3.53
3425 4939 3.699538 GCATCTTACCTTTTTGTAGGGGG 59.300 47.826 0.00 0.00 39.76 5.40
3426 4940 3.444792 TCTTACCTTTTTGTAGGGGGC 57.555 47.619 0.00 0.00 39.76 5.80
3427 4941 2.990998 TCTTACCTTTTTGTAGGGGGCT 59.009 45.455 0.00 0.00 39.76 5.19
3428 4942 2.891191 TACCTTTTTGTAGGGGGCTG 57.109 50.000 0.00 0.00 39.76 4.85
3429 4943 0.857675 ACCTTTTTGTAGGGGGCTGT 59.142 50.000 0.00 0.00 39.76 4.40
3430 4944 2.067386 ACCTTTTTGTAGGGGGCTGTA 58.933 47.619 0.00 0.00 39.76 2.74
3431 4945 2.652857 ACCTTTTTGTAGGGGGCTGTAT 59.347 45.455 0.00 0.00 39.76 2.29
3432 4946 3.076937 ACCTTTTTGTAGGGGGCTGTATT 59.923 43.478 0.00 0.00 39.76 1.89
3433 4947 4.292836 ACCTTTTTGTAGGGGGCTGTATTA 59.707 41.667 0.00 0.00 39.76 0.98
3434 4948 4.887655 CCTTTTTGTAGGGGGCTGTATTAG 59.112 45.833 0.00 0.00 0.00 1.73
3435 4949 5.339695 CCTTTTTGTAGGGGGCTGTATTAGA 60.340 44.000 0.00 0.00 0.00 2.10
3436 4950 5.782677 TTTTGTAGGGGGCTGTATTAGAA 57.217 39.130 0.00 0.00 0.00 2.10
3437 4951 5.782677 TTTGTAGGGGGCTGTATTAGAAA 57.217 39.130 0.00 0.00 0.00 2.52
3438 4952 5.987019 TTGTAGGGGGCTGTATTAGAAAT 57.013 39.130 0.00 0.00 0.00 2.17
3472 4986 8.561738 TCTTAACTTTGTCCATACATTTCCTC 57.438 34.615 0.00 0.00 34.97 3.71
3479 4993 3.045634 TCCATACATTTCCTCGGTCCAT 58.954 45.455 0.00 0.00 0.00 3.41
3484 4998 4.771114 ACATTTCCTCGGTCCATCATAA 57.229 40.909 0.00 0.00 0.00 1.90
3507 5029 7.639113 AAACTGAACTGGAAATTACTGTCAA 57.361 32.000 0.00 0.00 0.00 3.18
3513 5035 5.892348 ACTGGAAATTACTGTCAATTCCCT 58.108 37.500 6.40 0.00 0.00 4.20
3520 5042 2.086869 ACTGTCAATTCCCTGCAATCG 58.913 47.619 0.00 0.00 0.00 3.34
3551 5073 3.414486 ACCTTTGGTGGCTGTGTAC 57.586 52.632 0.00 0.00 32.98 2.90
3552 5074 0.843984 ACCTTTGGTGGCTGTGTACT 59.156 50.000 0.00 0.00 32.98 2.73
3582 5104 4.489771 CGGTGGCCCCATGGAGTC 62.490 72.222 15.22 0.39 0.00 3.36
3596 5118 3.874383 TGGAGTCTGGGATTTTCAACA 57.126 42.857 0.00 0.00 0.00 3.33
3603 5125 7.610305 GGAGTCTGGGATTTTCAACAGTAATTA 59.390 37.037 0.00 0.00 32.92 1.40
3673 5195 1.401552 CCCACGTTTGCATGTAGATGG 59.598 52.381 1.57 0.00 0.00 3.51
3718 5240 9.643693 ATTCCTTAATAAATGCTTCAGTTTGTG 57.356 29.630 0.00 0.00 0.00 3.33
3719 5241 8.402798 TCCTTAATAAATGCTTCAGTTTGTGA 57.597 30.769 0.00 0.00 0.00 3.58
3720 5242 8.514594 TCCTTAATAAATGCTTCAGTTTGTGAG 58.485 33.333 0.00 0.00 36.21 3.51
3721 5243 7.274250 CCTTAATAAATGCTTCAGTTTGTGAGC 59.726 37.037 0.00 0.00 36.21 4.26
3722 5244 5.972107 ATAAATGCTTCAGTTTGTGAGCT 57.028 34.783 0.00 0.00 36.21 4.09
3723 5245 7.452880 AATAAATGCTTCAGTTTGTGAGCTA 57.547 32.000 0.00 0.00 36.21 3.32
3724 5246 5.772825 AAATGCTTCAGTTTGTGAGCTAA 57.227 34.783 0.00 0.00 36.21 3.09
3725 5247 5.772825 AATGCTTCAGTTTGTGAGCTAAA 57.227 34.783 0.00 0.00 36.21 1.85
3726 5248 5.772825 ATGCTTCAGTTTGTGAGCTAAAA 57.227 34.783 0.00 0.00 36.21 1.52
3727 5249 5.574891 TGCTTCAGTTTGTGAGCTAAAAA 57.425 34.783 0.00 0.00 36.21 1.94
3748 5270 7.982761 AAAAACGGTGGTTGTATAATACAGA 57.017 32.000 0.00 0.00 40.24 3.41
3749 5271 7.605410 AAAACGGTGGTTGTATAATACAGAG 57.395 36.000 0.00 0.00 40.24 3.35
3750 5272 5.927281 ACGGTGGTTGTATAATACAGAGT 57.073 39.130 0.00 0.00 40.24 3.24
3751 5273 5.657474 ACGGTGGTTGTATAATACAGAGTG 58.343 41.667 0.00 0.00 40.24 3.51
3752 5274 5.047847 CGGTGGTTGTATAATACAGAGTGG 58.952 45.833 0.00 0.00 40.24 4.00
3753 5275 4.814771 GGTGGTTGTATAATACAGAGTGGC 59.185 45.833 0.00 0.00 40.24 5.01
3754 5276 5.424757 GTGGTTGTATAATACAGAGTGGCA 58.575 41.667 0.00 0.00 40.24 4.92
3755 5277 5.878116 GTGGTTGTATAATACAGAGTGGCAA 59.122 40.000 0.00 0.00 40.24 4.52
3756 5278 6.373216 GTGGTTGTATAATACAGAGTGGCAAA 59.627 38.462 0.00 0.00 40.24 3.68
3757 5279 7.067008 GTGGTTGTATAATACAGAGTGGCAAAT 59.933 37.037 0.00 0.00 40.24 2.32
3758 5280 8.268605 TGGTTGTATAATACAGAGTGGCAAATA 58.731 33.333 0.00 0.00 40.24 1.40
3759 5281 8.774586 GGTTGTATAATACAGAGTGGCAAATAG 58.225 37.037 0.00 0.00 40.24 1.73
3760 5282 9.326413 GTTGTATAATACAGAGTGGCAAATAGT 57.674 33.333 0.00 0.00 40.24 2.12
3766 5288 5.283457 ACAGAGTGGCAAATAGTATCTCC 57.717 43.478 0.00 0.00 0.00 3.71
3767 5289 4.716784 ACAGAGTGGCAAATAGTATCTCCA 59.283 41.667 0.00 0.00 0.00 3.86
3768 5290 5.367937 ACAGAGTGGCAAATAGTATCTCCAT 59.632 40.000 0.00 0.00 0.00 3.41
3769 5291 6.126652 ACAGAGTGGCAAATAGTATCTCCATT 60.127 38.462 0.00 0.00 0.00 3.16
3770 5292 6.426328 CAGAGTGGCAAATAGTATCTCCATTC 59.574 42.308 0.00 10.31 32.60 2.67
3771 5293 6.328672 AGAGTGGCAAATAGTATCTCCATTCT 59.671 38.462 13.07 13.07 36.34 2.40
3772 5294 7.510685 AGAGTGGCAAATAGTATCTCCATTCTA 59.489 37.037 15.44 0.00 38.39 2.10
3773 5295 7.675062 AGTGGCAAATAGTATCTCCATTCTAG 58.325 38.462 0.00 0.00 0.00 2.43
3774 5296 7.510685 AGTGGCAAATAGTATCTCCATTCTAGA 59.489 37.037 0.00 0.00 0.00 2.43
3775 5297 8.317679 GTGGCAAATAGTATCTCCATTCTAGAT 58.682 37.037 0.00 0.00 37.46 1.98
3776 5298 8.535335 TGGCAAATAGTATCTCCATTCTAGATC 58.465 37.037 0.00 0.00 35.36 2.75
3777 5299 7.984617 GGCAAATAGTATCTCCATTCTAGATCC 59.015 40.741 0.00 0.00 35.36 3.36
3778 5300 8.535335 GCAAATAGTATCTCCATTCTAGATCCA 58.465 37.037 0.00 0.00 35.36 3.41
3779 5301 9.868277 CAAATAGTATCTCCATTCTAGATCCAC 57.132 37.037 0.00 0.00 35.36 4.02
3780 5302 9.607333 AAATAGTATCTCCATTCTAGATCCACA 57.393 33.333 0.00 0.00 35.36 4.17
3781 5303 9.781425 AATAGTATCTCCATTCTAGATCCACAT 57.219 33.333 0.00 0.00 35.36 3.21
3782 5304 9.781425 ATAGTATCTCCATTCTAGATCCACATT 57.219 33.333 0.00 0.00 35.36 2.71
3783 5305 8.503428 AGTATCTCCATTCTAGATCCACATTT 57.497 34.615 0.00 0.00 35.36 2.32
3784 5306 8.373981 AGTATCTCCATTCTAGATCCACATTTG 58.626 37.037 0.00 0.00 35.36 2.32
3785 5307 6.566079 TCTCCATTCTAGATCCACATTTGT 57.434 37.500 0.00 0.00 0.00 2.83
3786 5308 6.962182 TCTCCATTCTAGATCCACATTTGTT 58.038 36.000 0.00 0.00 0.00 2.83
3787 5309 7.405292 TCTCCATTCTAGATCCACATTTGTTT 58.595 34.615 0.00 0.00 0.00 2.83
3788 5310 7.890127 TCTCCATTCTAGATCCACATTTGTTTT 59.110 33.333 0.00 0.00 0.00 2.43
3789 5311 8.421249 TCCATTCTAGATCCACATTTGTTTTT 57.579 30.769 0.00 0.00 0.00 1.94
3790 5312 8.306038 TCCATTCTAGATCCACATTTGTTTTTG 58.694 33.333 0.00 0.00 0.00 2.44
3791 5313 8.090214 CCATTCTAGATCCACATTTGTTTTTGT 58.910 33.333 0.00 0.00 0.00 2.83
3792 5314 8.918658 CATTCTAGATCCACATTTGTTTTTGTG 58.081 33.333 0.00 0.00 42.25 3.33
3793 5315 7.581213 TCTAGATCCACATTTGTTTTTGTGT 57.419 32.000 0.00 0.00 41.27 3.72
3794 5316 7.424803 TCTAGATCCACATTTGTTTTTGTGTG 58.575 34.615 0.00 0.00 41.27 3.82
3795 5317 4.810491 AGATCCACATTTGTTTTTGTGTGC 59.190 37.500 2.77 0.00 41.27 4.57
3796 5318 3.930336 TCCACATTTGTTTTTGTGTGCA 58.070 36.364 2.77 0.00 41.27 4.57
3797 5319 4.318332 TCCACATTTGTTTTTGTGTGCAA 58.682 34.783 0.00 0.00 41.27 4.08
3798 5320 4.153117 TCCACATTTGTTTTTGTGTGCAAC 59.847 37.500 0.00 0.00 41.27 4.17
3799 5321 4.401714 CACATTTGTTTTTGTGTGCAACC 58.598 39.130 0.00 0.00 38.69 3.77
3800 5322 4.153835 CACATTTGTTTTTGTGTGCAACCT 59.846 37.500 0.00 0.00 38.69 3.50
3801 5323 5.349817 CACATTTGTTTTTGTGTGCAACCTA 59.650 36.000 0.00 0.00 38.69 3.08
3802 5324 5.350091 ACATTTGTTTTTGTGTGCAACCTAC 59.650 36.000 0.00 0.00 34.36 3.18
3803 5325 4.521130 TTGTTTTTGTGTGCAACCTACA 57.479 36.364 0.00 0.00 34.36 2.74
3804 5326 4.521130 TGTTTTTGTGTGCAACCTACAA 57.479 36.364 0.00 0.00 34.36 2.41
3805 5327 4.883083 TGTTTTTGTGTGCAACCTACAAA 58.117 34.783 12.81 12.81 41.12 2.83
3806 5328 5.482908 TGTTTTTGTGTGCAACCTACAAAT 58.517 33.333 15.82 0.00 42.02 2.32
3807 5329 6.631016 TGTTTTTGTGTGCAACCTACAAATA 58.369 32.000 15.82 10.99 42.02 1.40
3808 5330 7.097192 TGTTTTTGTGTGCAACCTACAAATAA 58.903 30.769 15.82 11.79 42.02 1.40
3809 5331 7.602644 TGTTTTTGTGTGCAACCTACAAATAAA 59.397 29.630 15.82 9.01 42.02 1.40
3810 5332 8.443937 GTTTTTGTGTGCAACCTACAAATAAAA 58.556 29.630 15.82 8.53 42.02 1.52
3811 5333 8.723942 TTTTGTGTGCAACCTACAAATAAAAT 57.276 26.923 15.82 0.00 42.02 1.82
3812 5334 9.817809 TTTTGTGTGCAACCTACAAATAAAATA 57.182 25.926 15.82 3.34 42.02 1.40
3813 5335 9.817809 TTTGTGTGCAACCTACAAATAAAATAA 57.182 25.926 12.81 0.00 38.83 1.40
3814 5336 9.988815 TTGTGTGCAACCTACAAATAAAATAAT 57.011 25.926 0.00 0.00 34.36 1.28
3815 5337 9.988815 TGTGTGCAACCTACAAATAAAATAATT 57.011 25.926 0.00 0.00 34.36 1.40
3837 5359 8.503458 AATTTCTTCATAGACATCTTCAGGTG 57.497 34.615 0.00 0.00 0.00 4.00
3838 5360 5.016051 TCTTCATAGACATCTTCAGGTGC 57.984 43.478 0.00 0.00 0.00 5.01
3839 5361 3.827008 TCATAGACATCTTCAGGTGCC 57.173 47.619 0.00 0.00 0.00 5.01
3840 5362 2.435805 TCATAGACATCTTCAGGTGCCC 59.564 50.000 0.00 0.00 0.00 5.36
3841 5363 1.951209 TAGACATCTTCAGGTGCCCA 58.049 50.000 0.00 0.00 0.00 5.36
3842 5364 1.067295 AGACATCTTCAGGTGCCCAA 58.933 50.000 0.00 0.00 0.00 4.12
3843 5365 1.004044 AGACATCTTCAGGTGCCCAAG 59.996 52.381 0.00 0.00 0.00 3.61
3844 5366 0.038744 ACATCTTCAGGTGCCCAAGG 59.961 55.000 0.00 0.00 0.00 3.61
3845 5367 0.329261 CATCTTCAGGTGCCCAAGGA 59.671 55.000 0.00 0.00 0.00 3.36
3846 5368 0.622665 ATCTTCAGGTGCCCAAGGAG 59.377 55.000 0.00 0.00 0.00 3.69
3847 5369 1.676967 CTTCAGGTGCCCAAGGAGC 60.677 63.158 0.00 0.00 0.00 4.70
3848 5370 2.416107 CTTCAGGTGCCCAAGGAGCA 62.416 60.000 0.00 0.00 38.08 4.26
3849 5371 1.792757 TTCAGGTGCCCAAGGAGCAT 61.793 55.000 5.72 0.00 43.29 3.79
3850 5372 1.751927 CAGGTGCCCAAGGAGCATC 60.752 63.158 5.72 5.41 43.29 3.91
3851 5373 1.927527 AGGTGCCCAAGGAGCATCT 60.928 57.895 8.85 8.85 46.80 2.90
3852 5374 1.915228 GGTGCCCAAGGAGCATCTA 59.085 57.895 5.72 0.00 43.29 1.98
3853 5375 0.475906 GGTGCCCAAGGAGCATCTAT 59.524 55.000 5.72 0.00 43.29 1.98
3854 5376 1.699634 GGTGCCCAAGGAGCATCTATA 59.300 52.381 5.72 0.00 43.29 1.31
3855 5377 2.307098 GGTGCCCAAGGAGCATCTATAT 59.693 50.000 5.72 0.00 43.29 0.86
3856 5378 3.341823 GTGCCCAAGGAGCATCTATATG 58.658 50.000 5.72 0.00 43.29 1.78
3857 5379 2.981784 TGCCCAAGGAGCATCTATATGT 59.018 45.455 0.00 0.00 34.69 2.29
3858 5380 4.020218 GTGCCCAAGGAGCATCTATATGTA 60.020 45.833 5.72 0.00 43.29 2.29
3859 5381 4.784838 TGCCCAAGGAGCATCTATATGTAT 59.215 41.667 0.00 0.00 34.69 2.29
3860 5382 5.251468 TGCCCAAGGAGCATCTATATGTATT 59.749 40.000 0.00 0.00 34.69 1.89
3861 5383 6.183347 GCCCAAGGAGCATCTATATGTATTT 58.817 40.000 0.00 0.00 35.38 1.40
3862 5384 6.094603 GCCCAAGGAGCATCTATATGTATTTG 59.905 42.308 0.00 0.00 35.38 2.32
3863 5385 7.170965 CCCAAGGAGCATCTATATGTATTTGT 58.829 38.462 0.00 0.00 35.38 2.83
3864 5386 8.321353 CCCAAGGAGCATCTATATGTATTTGTA 58.679 37.037 0.00 0.00 35.38 2.41
3865 5387 9.725019 CCAAGGAGCATCTATATGTATTTGTAA 57.275 33.333 0.00 0.00 35.38 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.085555 TCAAACACATATCTCTATCGGTCC 57.914 41.667 0.00 0.00 0.00 4.46
1 2 6.587990 CCATCAAACACATATCTCTATCGGTC 59.412 42.308 0.00 0.00 0.00 4.79
2 3 6.459066 CCATCAAACACATATCTCTATCGGT 58.541 40.000 0.00 0.00 0.00 4.69
3 4 5.349817 GCCATCAAACACATATCTCTATCGG 59.650 44.000 0.00 0.00 0.00 4.18
4 5 6.162079 AGCCATCAAACACATATCTCTATCG 58.838 40.000 0.00 0.00 0.00 2.92
5 6 9.494271 TTTAGCCATCAAACACATATCTCTATC 57.506 33.333 0.00 0.00 0.00 2.08
6 7 9.277783 GTTTAGCCATCAAACACATATCTCTAT 57.722 33.333 0.00 0.00 36.20 1.98
7 8 8.264347 TGTTTAGCCATCAAACACATATCTCTA 58.736 33.333 0.00 0.00 40.12 2.43
8 9 7.112122 TGTTTAGCCATCAAACACATATCTCT 58.888 34.615 0.00 0.00 40.12 3.10
9 10 7.320443 TGTTTAGCCATCAAACACATATCTC 57.680 36.000 0.00 0.00 40.12 2.75
17 18 2.550606 GGACGTGTTTAGCCATCAAACA 59.449 45.455 0.00 0.00 42.12 2.83
18 19 2.812011 AGGACGTGTTTAGCCATCAAAC 59.188 45.455 0.00 0.00 36.60 2.93
19 20 3.134574 AGGACGTGTTTAGCCATCAAA 57.865 42.857 0.00 0.00 0.00 2.69
20 21 2.851263 AGGACGTGTTTAGCCATCAA 57.149 45.000 0.00 0.00 0.00 2.57
21 22 2.851263 AAGGACGTGTTTAGCCATCA 57.149 45.000 0.00 0.00 0.00 3.07
22 23 3.617263 CACTAAGGACGTGTTTAGCCATC 59.383 47.826 13.01 0.00 31.56 3.51
23 24 3.596214 CACTAAGGACGTGTTTAGCCAT 58.404 45.455 13.01 0.00 31.56 4.40
39 40 2.889045 ACAACCGTCTAGACTGCACTAA 59.111 45.455 20.34 0.00 0.00 2.24
40 41 2.228103 CACAACCGTCTAGACTGCACTA 59.772 50.000 20.34 0.00 0.00 2.74
51 54 0.586319 CAAATCGCACACAACCGTCT 59.414 50.000 0.00 0.00 0.00 4.18
59 62 1.635663 CGGACCCTCAAATCGCACAC 61.636 60.000 0.00 0.00 0.00 3.82
61 64 2.750888 GCGGACCCTCAAATCGCAC 61.751 63.158 0.00 0.00 44.87 5.34
62 65 2.435938 GCGGACCCTCAAATCGCA 60.436 61.111 0.00 0.00 44.87 5.10
70 73 4.202388 TGGGTATATTTAAAGCGGACCCTC 60.202 45.833 21.73 6.42 44.55 4.30
79 82 7.932335 TGTATGGCGTTTGGGTATATTTAAAG 58.068 34.615 0.00 0.00 0.00 1.85
84 87 6.303839 AGAATGTATGGCGTTTGGGTATATT 58.696 36.000 0.00 0.00 0.00 1.28
86 89 5.071250 AGAGAATGTATGGCGTTTGGGTATA 59.929 40.000 0.00 0.00 0.00 1.47
89 92 2.026262 AGAGAATGTATGGCGTTTGGGT 60.026 45.455 0.00 0.00 0.00 4.51
93 96 7.865706 AATCTTTAGAGAATGTATGGCGTTT 57.134 32.000 0.00 0.00 35.07 3.60
94 97 7.012421 GGAAATCTTTAGAGAATGTATGGCGTT 59.988 37.037 0.00 0.00 35.07 4.84
118 121 1.854280 GGAGGGAGGAGACTAAGAGGA 59.146 57.143 0.00 0.00 44.43 3.71
123 126 0.710588 TGCTGGAGGGAGGAGACTAA 59.289 55.000 0.00 0.00 44.43 2.24
126 129 0.915364 AAATGCTGGAGGGAGGAGAC 59.085 55.000 0.00 0.00 0.00 3.36
128 131 0.622665 ACAAATGCTGGAGGGAGGAG 59.377 55.000 0.00 0.00 0.00 3.69
134 137 3.318839 TGACAAAAGACAAATGCTGGAGG 59.681 43.478 0.00 0.00 0.00 4.30
138 141 4.304110 AGCATGACAAAAGACAAATGCTG 58.696 39.130 7.13 0.00 46.57 4.41
155 158 7.956420 ATATGTTGCCATAATGAAAAGCATG 57.044 32.000 0.00 0.00 37.12 4.06
170 175 9.546428 AAGCTTAAAATCCAATTATATGTTGCC 57.454 29.630 0.00 0.00 0.00 4.52
209 215 3.125146 TGTCGTGAAATCAGCAATGCTAC 59.875 43.478 7.70 0.00 36.40 3.58
212 218 2.617250 TGTCGTGAAATCAGCAATGC 57.383 45.000 0.00 0.00 0.00 3.56
223 229 3.981071 ATGGAGAGGAAATGTCGTGAA 57.019 42.857 0.00 0.00 0.00 3.18
229 235 5.745227 ACGTTGATAATGGAGAGGAAATGT 58.255 37.500 0.00 0.00 0.00 2.71
240 246 4.689071 TGTGGTAGCTACGTTGATAATGG 58.311 43.478 17.48 0.00 0.00 3.16
250 256 5.874831 TGCAAATAATTTGTGGTAGCTACG 58.125 37.500 17.48 0.39 42.56 3.51
345 353 1.379146 GGTTGTGGAACCCTCTCCC 59.621 63.158 0.00 0.00 45.48 4.30
368 376 3.877559 TCATAGCTCTGGTTTCATGTGG 58.122 45.455 0.00 0.00 0.00 4.17
419 431 1.867233 CCCGGCTTTCGTTGATATGAG 59.133 52.381 0.00 0.00 37.11 2.90
421 433 1.663695 ACCCGGCTTTCGTTGATATG 58.336 50.000 0.00 0.00 37.11 1.78
426 438 0.382515 TTTGAACCCGGCTTTCGTTG 59.617 50.000 0.00 0.00 37.11 4.10
427 439 0.666374 CTTTGAACCCGGCTTTCGTT 59.334 50.000 0.00 0.00 37.11 3.85
430 442 1.314730 TGACTTTGAACCCGGCTTTC 58.685 50.000 0.00 0.80 0.00 2.62
452 464 8.682128 TGCTTTTGTACTGTGTTAAAAGAAAG 57.318 30.769 20.25 8.98 40.68 2.62
456 468 6.410914 CGTCTGCTTTTGTACTGTGTTAAAAG 59.589 38.462 15.47 15.47 40.98 2.27
457 469 6.252281 CGTCTGCTTTTGTACTGTGTTAAAA 58.748 36.000 0.00 0.00 0.00 1.52
503 515 9.440773 GTGCATTACCTATATTCATGAAGATGA 57.559 33.333 22.74 8.41 36.78 2.92
504 516 9.223099 TGTGCATTACCTATATTCATGAAGATG 57.777 33.333 22.74 11.36 0.00 2.90
505 517 9.970553 ATGTGCATTACCTATATTCATGAAGAT 57.029 29.630 18.84 18.84 0.00 2.40
506 518 9.797642 AATGTGCATTACCTATATTCATGAAGA 57.202 29.630 14.54 10.02 0.00 2.87
508 520 9.797642 AGAATGTGCATTACCTATATTCATGAA 57.202 29.630 11.26 11.26 0.00 2.57
518 530 8.655901 TCATATTGGTAGAATGTGCATTACCTA 58.344 33.333 14.39 9.54 32.96 3.08
519 531 7.517320 TCATATTGGTAGAATGTGCATTACCT 58.483 34.615 14.39 5.37 32.96 3.08
520 532 7.445402 ACTCATATTGGTAGAATGTGCATTACC 59.555 37.037 8.98 8.98 32.58 2.85
521 533 8.383318 ACTCATATTGGTAGAATGTGCATTAC 57.617 34.615 0.00 0.00 0.00 1.89
522 534 9.489084 GTACTCATATTGGTAGAATGTGCATTA 57.511 33.333 0.00 0.00 0.00 1.90
523 535 7.445402 GGTACTCATATTGGTAGAATGTGCATT 59.555 37.037 0.00 0.00 0.00 3.56
524 536 6.936900 GGTACTCATATTGGTAGAATGTGCAT 59.063 38.462 0.00 0.00 0.00 3.96
525 537 6.099701 AGGTACTCATATTGGTAGAATGTGCA 59.900 38.462 0.00 0.00 0.00 4.57
526 538 6.525629 AGGTACTCATATTGGTAGAATGTGC 58.474 40.000 0.00 0.00 0.00 4.57
529 541 7.658261 TCGAAGGTACTCATATTGGTAGAATG 58.342 38.462 0.00 0.00 38.49 2.67
536 548 5.776173 ACTCTCGAAGGTACTCATATTGG 57.224 43.478 0.00 0.00 38.49 3.16
539 551 5.009210 GCTCAACTCTCGAAGGTACTCATAT 59.991 44.000 0.00 0.00 38.49 1.78
541 553 3.129638 GCTCAACTCTCGAAGGTACTCAT 59.870 47.826 0.00 0.00 38.49 2.90
549 561 2.266554 GTGATGGCTCAACTCTCGAAG 58.733 52.381 0.00 0.00 31.85 3.79
550 562 1.618343 TGTGATGGCTCAACTCTCGAA 59.382 47.619 0.00 0.00 31.85 3.71
551 563 1.256812 TGTGATGGCTCAACTCTCGA 58.743 50.000 0.00 0.00 31.85 4.04
558 1939 5.993055 TCTCAAGATAATGTGATGGCTCAA 58.007 37.500 0.00 0.00 31.85 3.02
561 1942 6.598503 TCAATCTCAAGATAATGTGATGGCT 58.401 36.000 0.00 0.00 34.67 4.75
575 1956 6.875726 TCTGTGGTGACTTTATCAATCTCAAG 59.124 38.462 0.00 0.00 39.72 3.02
580 1961 5.122396 GGTGTCTGTGGTGACTTTATCAATC 59.878 44.000 0.00 0.00 39.72 2.67
586 1967 4.196193 CAAAGGTGTCTGTGGTGACTTTA 58.804 43.478 0.00 0.00 37.79 1.85
587 1968 3.016736 CAAAGGTGTCTGTGGTGACTTT 58.983 45.455 0.00 0.00 37.79 2.66
593 1974 6.238538 CGTTTTTATACAAAGGTGTCTGTGGT 60.239 38.462 0.00 0.00 39.30 4.16
598 1979 7.713942 AGAAGACGTTTTTATACAAAGGTGTCT 59.286 33.333 12.94 11.80 39.30 3.41
599 1980 7.858583 AGAAGACGTTTTTATACAAAGGTGTC 58.141 34.615 12.94 10.23 39.30 3.67
600 1981 7.797038 AGAAGACGTTTTTATACAAAGGTGT 57.203 32.000 12.94 7.51 42.09 4.16
601 1982 7.801783 GGAAGAAGACGTTTTTATACAAAGGTG 59.198 37.037 12.94 0.00 35.43 4.00
602 1983 7.499895 TGGAAGAAGACGTTTTTATACAAAGGT 59.500 33.333 8.93 8.93 37.44 3.50
603 1984 7.801783 GTGGAAGAAGACGTTTTTATACAAAGG 59.198 37.037 0.00 3.19 0.00 3.11
604 1985 8.557029 AGTGGAAGAAGACGTTTTTATACAAAG 58.443 33.333 0.00 0.00 0.00 2.77
606 1987 7.041644 CCAGTGGAAGAAGACGTTTTTATACAA 60.042 37.037 1.68 0.00 0.00 2.41
607 1988 6.425721 CCAGTGGAAGAAGACGTTTTTATACA 59.574 38.462 1.68 0.00 0.00 2.29
608 1989 6.647895 TCCAGTGGAAGAAGACGTTTTTATAC 59.352 38.462 10.20 0.00 0.00 1.47
609 1990 6.647895 GTCCAGTGGAAGAAGACGTTTTTATA 59.352 38.462 15.09 0.00 31.38 0.98
612 1993 3.626217 GTCCAGTGGAAGAAGACGTTTTT 59.374 43.478 15.09 0.00 31.38 1.94
622 2003 2.107366 TGATATGCGTCCAGTGGAAGA 58.893 47.619 26.94 13.21 33.09 2.87
626 2007 2.245159 ATGTGATATGCGTCCAGTGG 57.755 50.000 1.40 1.40 0.00 4.00
627 2008 4.212004 CCTTTATGTGATATGCGTCCAGTG 59.788 45.833 0.00 0.00 0.00 3.66
632 2013 3.187227 CAGGCCTTTATGTGATATGCGTC 59.813 47.826 0.00 0.00 0.00 5.19
634 2015 3.402110 TCAGGCCTTTATGTGATATGCG 58.598 45.455 0.00 0.00 0.00 4.73
642 2023 5.271598 TGGATTCATTTCAGGCCTTTATGT 58.728 37.500 0.00 0.00 0.00 2.29
643 2024 5.595542 TCTGGATTCATTTCAGGCCTTTATG 59.404 40.000 0.00 7.38 0.00 1.90
644 2025 5.769835 TCTGGATTCATTTCAGGCCTTTAT 58.230 37.500 0.00 0.00 0.00 1.40
645 2026 5.191727 TCTGGATTCATTTCAGGCCTTTA 57.808 39.130 0.00 0.00 0.00 1.85
650 2031 5.064325 GCATTTTTCTGGATTCATTTCAGGC 59.936 40.000 0.00 0.00 0.00 4.85
654 2035 6.148150 TGCTTGCATTTTTCTGGATTCATTTC 59.852 34.615 0.00 0.00 0.00 2.17
669 2050 3.395639 CTTGACATTGGTGCTTGCATTT 58.604 40.909 0.00 0.00 0.00 2.32
675 2056 0.823356 ACGGCTTGACATTGGTGCTT 60.823 50.000 0.00 0.00 0.00 3.91
685 2066 2.907910 TAGTACTTCGACGGCTTGAC 57.092 50.000 0.00 0.00 0.00 3.18
691 2072 8.728088 TTTTACTTACTTTAGTACTTCGACGG 57.272 34.615 0.00 0.00 30.62 4.79
808 2193 2.287909 TGGTGCGTTTGCTGGTTTTATC 60.288 45.455 0.00 0.00 43.34 1.75
823 2211 5.065218 AGCTAAATTTAGATCTTGTGGTGCG 59.935 40.000 26.00 0.00 32.47 5.34
856 2252 1.683441 GGGGAATTGTGGTCGTCCT 59.317 57.895 0.00 0.00 34.23 3.85
882 2278 1.269154 GGAGCGTTAGGAGATCGGAAC 60.269 57.143 0.00 0.00 0.00 3.62
1208 2607 2.614013 GATCAGGTGGGTGGGGGT 60.614 66.667 0.00 0.00 0.00 4.95
1213 2612 2.184322 CGACGGATCAGGTGGGTG 59.816 66.667 0.00 0.00 0.00 4.61
1245 2644 3.299585 CGATCAACGCAGGCTACG 58.700 61.111 5.40 5.40 34.51 3.51
1254 2653 1.745566 TAATACGACGGCGATCAACG 58.254 50.000 22.49 13.13 45.66 4.10
1255 2654 3.181556 CGAATAATACGACGGCGATCAAC 60.182 47.826 22.49 0.92 41.64 3.18
1256 2655 2.975193 CGAATAATACGACGGCGATCAA 59.025 45.455 22.49 0.00 41.64 2.57
1257 2656 2.031769 ACGAATAATACGACGGCGATCA 60.032 45.455 22.49 1.10 41.64 2.92
1258 2657 2.337644 CACGAATAATACGACGGCGATC 59.662 50.000 22.49 6.66 41.64 3.69
1259 2658 2.313234 CACGAATAATACGACGGCGAT 58.687 47.619 22.49 5.47 41.64 4.58
1260 2659 1.745566 CACGAATAATACGACGGCGA 58.254 50.000 22.49 0.00 41.64 5.54
1261 2660 0.158096 GCACGAATAATACGACGGCG 59.842 55.000 10.39 10.39 44.79 6.46
1262 2661 0.158096 CGCACGAATAATACGACGGC 59.842 55.000 0.00 0.00 33.39 5.68
1263 2662 1.186408 CACGCACGAATAATACGACGG 59.814 52.381 0.00 0.00 37.81 4.79
1264 2663 1.393858 GCACGCACGAATAATACGACG 60.394 52.381 0.00 0.00 38.71 5.12
1265 2664 1.393858 CGCACGCACGAATAATACGAC 60.394 52.381 0.00 0.00 34.06 4.34
1266 2665 0.841356 CGCACGCACGAATAATACGA 59.159 50.000 0.00 0.00 34.06 3.43
1267 2666 0.568888 ACGCACGCACGAATAATACG 59.431 50.000 4.54 0.00 36.70 3.06
1268 2667 2.028284 TGAACGCACGCACGAATAATAC 59.972 45.455 4.54 0.00 36.70 1.89
1269 2668 2.028284 GTGAACGCACGCACGAATAATA 59.972 45.455 4.54 0.00 34.94 0.98
1270 2669 1.072391 TGAACGCACGCACGAATAAT 58.928 45.000 4.54 0.00 36.70 1.28
1271 2670 0.162082 GTGAACGCACGCACGAATAA 59.838 50.000 4.54 0.00 34.94 1.40
1272 2671 1.776580 GTGAACGCACGCACGAATA 59.223 52.632 4.54 0.00 34.94 1.75
1318 2717 2.821546 CAATCAAGCCAATGCCAGATG 58.178 47.619 0.00 0.00 38.69 2.90
1452 2851 2.997980 TCTTGACAAAGCCAGTTCACA 58.002 42.857 0.00 0.00 33.06 3.58
1614 3013 3.067040 GGATCAAAGTACTCTCTCCGTCC 59.933 52.174 0.00 0.00 0.00 4.79
1710 3109 6.357579 ACCACATTTATCAAATCAGGCAAA 57.642 33.333 0.00 0.00 0.00 3.68
1714 3113 8.875803 CATGAAAACCACATTTATCAAATCAGG 58.124 33.333 0.00 0.00 0.00 3.86
1782 3181 2.669240 GGCAGTGACCACCCTACC 59.331 66.667 0.00 0.00 0.00 3.18
1917 3323 9.859427 TGATGTATGAGAATTTGGTGAAATTTC 57.141 29.630 11.41 11.41 41.06 2.17
1994 3409 3.660501 ACGCAGTGAGTTATCAACAGA 57.339 42.857 0.00 0.00 42.51 3.41
2013 3428 3.145212 ACAACAAAGCCGAAACAGAAC 57.855 42.857 0.00 0.00 0.00 3.01
2022 3437 5.637810 TCTCTACTATTGAACAACAAAGCCG 59.362 40.000 0.00 0.00 42.03 5.52
2111 3532 6.874664 ACAATATGCTGAAAATCAAATGCACA 59.125 30.769 0.00 0.00 29.76 4.57
2338 3760 6.485313 TGTAATGATTCGGTATTCACATTCCC 59.515 38.462 0.00 0.00 31.85 3.97
2339 3761 7.490962 TGTAATGATTCGGTATTCACATTCC 57.509 36.000 0.00 0.00 31.85 3.01
2596 4070 0.097674 CCGAAGCTTCAGAAATGCGG 59.902 55.000 25.47 14.99 0.00 5.69
2597 4071 0.522076 GCCGAAGCTTCAGAAATGCG 60.522 55.000 25.47 9.86 35.50 4.73
2647 4136 2.619177 CTCACCACGATCTAGTACCTGG 59.381 54.545 0.00 0.00 0.00 4.45
2695 4184 0.754957 CCTGTGAGCGGAGATCCTCT 60.755 60.000 0.00 0.00 45.64 3.69
2734 4223 4.568760 AGGAAAGAAAAGATCGAATCGAGC 59.431 41.667 13.43 13.43 42.87 5.03
3024 4525 0.320334 TTCTCTTCGGCAATGCGACA 60.320 50.000 0.00 0.00 0.00 4.35
3034 4535 0.243907 TCCTGCGTTCTTCTCTTCGG 59.756 55.000 0.00 0.00 0.00 4.30
3047 4548 2.024414 CCCCTTATTTCCTTTCCTGCG 58.976 52.381 0.00 0.00 0.00 5.18
3089 4595 2.474359 CAGCGCTCTCTACATATGTTGC 59.526 50.000 14.77 9.89 0.00 4.17
3126 4632 1.469940 GGTGACGCACTCTCTATGTGG 60.470 57.143 9.31 0.00 36.08 4.17
3141 4647 2.726691 CGACGCGGTTGATGGTGAC 61.727 63.158 12.47 0.00 0.00 3.67
3153 4660 1.472276 GATTCTAGCACCACGACGCG 61.472 60.000 3.53 3.53 0.00 6.01
3162 4669 2.941453 TCACTGACGGATTCTAGCAC 57.059 50.000 0.00 0.00 0.00 4.40
3173 4680 6.088217 CAGCGGAAACTATAATATCACTGACG 59.912 42.308 0.00 0.00 0.00 4.35
3254 4765 4.307032 AATACTTGGGCATTGACTCTGT 57.693 40.909 0.00 0.00 0.00 3.41
3255 4766 6.949352 ATAAATACTTGGGCATTGACTCTG 57.051 37.500 0.00 0.00 0.00 3.35
3295 4808 8.432013 TCATCTGGATTGCAACATTATACTAGT 58.568 33.333 0.00 0.00 0.00 2.57
3296 4809 8.837788 TCATCTGGATTGCAACATTATACTAG 57.162 34.615 0.00 0.00 0.00 2.57
3297 4810 7.879677 CCTCATCTGGATTGCAACATTATACTA 59.120 37.037 0.00 0.00 0.00 1.82
3298 4811 6.713903 CCTCATCTGGATTGCAACATTATACT 59.286 38.462 0.00 0.00 0.00 2.12
3299 4812 6.488006 ACCTCATCTGGATTGCAACATTATAC 59.512 38.462 0.00 0.00 0.00 1.47
3300 4813 6.604171 ACCTCATCTGGATTGCAACATTATA 58.396 36.000 0.00 0.00 0.00 0.98
3301 4814 5.452255 ACCTCATCTGGATTGCAACATTAT 58.548 37.500 0.00 0.00 0.00 1.28
3310 4823 4.946157 AGCAAAAGTACCTCATCTGGATTG 59.054 41.667 0.00 0.00 0.00 2.67
3311 4824 4.946157 CAGCAAAAGTACCTCATCTGGATT 59.054 41.667 0.00 0.00 0.00 3.01
3314 4827 2.421424 GCAGCAAAAGTACCTCATCTGG 59.579 50.000 0.00 0.00 0.00 3.86
3350 4863 5.182760 AGAAGCATGTTCAGGAAGATCAAAC 59.817 40.000 0.00 0.00 30.23 2.93
3378 4892 4.500499 AAGCTAGTTCAAGAGCCATGAT 57.500 40.909 0.00 0.00 39.65 2.45
3418 4932 7.742767 TCTAAATTTCTAATACAGCCCCCTAC 58.257 38.462 0.00 0.00 0.00 3.18
3419 4933 7.941053 TCTAAATTTCTAATACAGCCCCCTA 57.059 36.000 0.00 0.00 0.00 3.53
3420 4934 6.841781 TCTAAATTTCTAATACAGCCCCCT 57.158 37.500 0.00 0.00 0.00 4.79
3455 4969 3.370103 GGACCGAGGAAATGTATGGACAA 60.370 47.826 0.00 0.00 39.59 3.18
3457 4971 2.169769 TGGACCGAGGAAATGTATGGAC 59.830 50.000 0.00 0.00 0.00 4.02
3466 4980 4.224147 TCAGTTTATGATGGACCGAGGAAA 59.776 41.667 0.00 0.00 31.12 3.13
3472 4986 3.623060 CCAGTTCAGTTTATGATGGACCG 59.377 47.826 0.00 0.00 39.53 4.79
3479 4993 8.918202 ACAGTAATTTCCAGTTCAGTTTATGA 57.082 30.769 0.00 0.00 35.62 2.15
3484 4998 7.823745 ATTGACAGTAATTTCCAGTTCAGTT 57.176 32.000 0.00 0.00 0.00 3.16
3507 5029 1.202533 CGACCTACGATTGCAGGGAAT 60.203 52.381 4.13 0.00 45.77 3.01
3520 5042 1.607251 CCAAAGGTGGTGTCGACCTAC 60.607 57.143 14.12 11.99 43.42 3.18
3543 5065 0.734253 CTCCAGCGACAGTACACAGC 60.734 60.000 0.00 0.00 0.00 4.40
3638 5160 7.021790 GCAAACGTGGGTTAAATTTTCAAAAA 58.978 30.769 0.00 0.00 34.62 1.94
3639 5161 6.148811 TGCAAACGTGGGTTAAATTTTCAAAA 59.851 30.769 0.00 0.00 34.62 2.44
3640 5162 5.642063 TGCAAACGTGGGTTAAATTTTCAAA 59.358 32.000 0.00 0.00 34.62 2.69
3647 5169 4.762765 TCTACATGCAAACGTGGGTTAAAT 59.237 37.500 0.00 0.00 37.10 1.40
3658 5180 2.648059 AGAGCCCATCTACATGCAAAC 58.352 47.619 0.00 0.00 36.10 2.93
3692 5214 9.643693 CACAAACTGAAGCATTTATTAAGGAAT 57.356 29.630 0.00 0.00 0.00 3.01
3693 5215 8.855110 TCACAAACTGAAGCATTTATTAAGGAA 58.145 29.630 0.00 0.00 0.00 3.36
3694 5216 8.402798 TCACAAACTGAAGCATTTATTAAGGA 57.597 30.769 0.00 0.00 0.00 3.36
3695 5217 7.274250 GCTCACAAACTGAAGCATTTATTAAGG 59.726 37.037 0.00 0.00 32.70 2.69
3696 5218 8.025445 AGCTCACAAACTGAAGCATTTATTAAG 58.975 33.333 0.00 0.00 34.07 1.85
3697 5219 7.885297 AGCTCACAAACTGAAGCATTTATTAA 58.115 30.769 0.00 0.00 34.07 1.40
3698 5220 7.452880 AGCTCACAAACTGAAGCATTTATTA 57.547 32.000 0.00 0.00 34.07 0.98
3699 5221 6.336842 AGCTCACAAACTGAAGCATTTATT 57.663 33.333 0.00 0.00 34.07 1.40
3700 5222 5.972107 AGCTCACAAACTGAAGCATTTAT 57.028 34.783 0.00 0.00 34.07 1.40
3701 5223 6.875948 TTAGCTCACAAACTGAAGCATTTA 57.124 33.333 0.00 0.00 34.07 1.40
3702 5224 5.772825 TTAGCTCACAAACTGAAGCATTT 57.227 34.783 0.00 0.00 34.07 2.32
3703 5225 5.772825 TTTAGCTCACAAACTGAAGCATT 57.227 34.783 0.00 0.00 34.07 3.56
3704 5226 5.772825 TTTTAGCTCACAAACTGAAGCAT 57.227 34.783 0.00 0.00 34.07 3.79
3705 5227 5.574891 TTTTTAGCTCACAAACTGAAGCA 57.425 34.783 0.00 0.00 34.07 3.91
3724 5246 7.662669 ACTCTGTATTATACAACCACCGTTTTT 59.337 33.333 6.52 0.00 38.38 1.94
3725 5247 7.118680 CACTCTGTATTATACAACCACCGTTTT 59.881 37.037 6.52 0.00 38.38 2.43
3726 5248 6.592607 CACTCTGTATTATACAACCACCGTTT 59.407 38.462 6.52 0.00 38.38 3.60
3727 5249 6.103997 CACTCTGTATTATACAACCACCGTT 58.896 40.000 6.52 0.00 38.38 4.44
3728 5250 5.394883 CCACTCTGTATTATACAACCACCGT 60.395 44.000 6.52 0.00 38.38 4.83
3729 5251 5.047847 CCACTCTGTATTATACAACCACCG 58.952 45.833 6.52 0.00 38.38 4.94
3730 5252 4.814771 GCCACTCTGTATTATACAACCACC 59.185 45.833 6.52 0.00 38.38 4.61
3731 5253 5.424757 TGCCACTCTGTATTATACAACCAC 58.575 41.667 6.52 0.00 38.38 4.16
3732 5254 5.685520 TGCCACTCTGTATTATACAACCA 57.314 39.130 6.52 0.00 38.38 3.67
3733 5255 6.995511 TTTGCCACTCTGTATTATACAACC 57.004 37.500 6.52 0.00 38.38 3.77
3734 5256 9.326413 ACTATTTGCCACTCTGTATTATACAAC 57.674 33.333 6.52 0.00 38.38 3.32
3740 5262 8.585881 GGAGATACTATTTGCCACTCTGTATTA 58.414 37.037 0.00 0.00 0.00 0.98
3741 5263 7.071196 TGGAGATACTATTTGCCACTCTGTATT 59.929 37.037 0.00 0.00 0.00 1.89
3742 5264 6.554982 TGGAGATACTATTTGCCACTCTGTAT 59.445 38.462 0.00 0.00 0.00 2.29
3743 5265 5.897250 TGGAGATACTATTTGCCACTCTGTA 59.103 40.000 0.00 0.00 0.00 2.74
3744 5266 4.716784 TGGAGATACTATTTGCCACTCTGT 59.283 41.667 0.00 0.00 0.00 3.41
3745 5267 5.282055 TGGAGATACTATTTGCCACTCTG 57.718 43.478 0.00 0.00 0.00 3.35
3746 5268 6.328672 AGAATGGAGATACTATTTGCCACTCT 59.671 38.462 0.00 0.00 30.00 3.24
3747 5269 6.529220 AGAATGGAGATACTATTTGCCACTC 58.471 40.000 0.00 0.00 30.00 3.51
3748 5270 6.506538 AGAATGGAGATACTATTTGCCACT 57.493 37.500 0.00 0.00 30.00 4.00
3749 5271 7.671302 TCTAGAATGGAGATACTATTTGCCAC 58.329 38.462 0.00 0.00 30.00 5.01
3750 5272 7.855784 TCTAGAATGGAGATACTATTTGCCA 57.144 36.000 0.00 0.00 30.00 4.92
3751 5273 7.984617 GGATCTAGAATGGAGATACTATTTGCC 59.015 40.741 0.00 0.00 33.71 4.52
3752 5274 8.535335 TGGATCTAGAATGGAGATACTATTTGC 58.465 37.037 0.00 0.00 35.56 3.68
3753 5275 9.868277 GTGGATCTAGAATGGAGATACTATTTG 57.132 37.037 0.00 0.00 35.56 2.32
3754 5276 9.607333 TGTGGATCTAGAATGGAGATACTATTT 57.393 33.333 0.00 0.00 35.56 1.40
3755 5277 9.781425 ATGTGGATCTAGAATGGAGATACTATT 57.219 33.333 0.00 0.00 35.56 1.73
3756 5278 9.781425 AATGTGGATCTAGAATGGAGATACTAT 57.219 33.333 0.00 0.00 35.56 2.12
3757 5279 9.607333 AAATGTGGATCTAGAATGGAGATACTA 57.393 33.333 0.00 0.00 35.56 1.82
3758 5280 8.373981 CAAATGTGGATCTAGAATGGAGATACT 58.626 37.037 0.00 0.00 35.56 2.12
3759 5281 8.153550 ACAAATGTGGATCTAGAATGGAGATAC 58.846 37.037 0.00 0.00 35.16 2.24
3760 5282 8.267620 ACAAATGTGGATCTAGAATGGAGATA 57.732 34.615 0.00 0.00 33.71 1.98
3761 5283 7.146715 ACAAATGTGGATCTAGAATGGAGAT 57.853 36.000 0.00 0.00 36.33 2.75
3762 5284 6.566079 ACAAATGTGGATCTAGAATGGAGA 57.434 37.500 0.00 0.00 0.00 3.71
3763 5285 7.636150 AAACAAATGTGGATCTAGAATGGAG 57.364 36.000 0.00 0.00 0.00 3.86
3764 5286 8.306038 CAAAAACAAATGTGGATCTAGAATGGA 58.694 33.333 0.00 0.00 0.00 3.41
3765 5287 8.090214 ACAAAAACAAATGTGGATCTAGAATGG 58.910 33.333 0.00 0.00 0.00 3.16
3766 5288 8.918658 CACAAAAACAAATGTGGATCTAGAATG 58.081 33.333 0.00 0.00 42.46 2.67
3778 5300 4.322567 AGGTTGCACACAAAAACAAATGT 58.677 34.783 0.00 0.00 37.58 2.71
3779 5301 4.943142 AGGTTGCACACAAAAACAAATG 57.057 36.364 0.00 0.00 37.58 2.32
3780 5302 5.482908 TGTAGGTTGCACACAAAAACAAAT 58.517 33.333 0.00 0.00 37.58 2.32
3781 5303 4.883083 TGTAGGTTGCACACAAAAACAAA 58.117 34.783 0.00 0.00 37.58 2.83
3782 5304 4.521130 TGTAGGTTGCACACAAAAACAA 57.479 36.364 0.00 0.00 37.58 2.83
3783 5305 4.521130 TTGTAGGTTGCACACAAAAACA 57.479 36.364 0.00 0.00 37.58 2.83
3784 5306 7.527084 TTATTTGTAGGTTGCACACAAAAAC 57.473 32.000 15.10 0.00 43.25 2.43
3785 5307 8.547967 TTTTATTTGTAGGTTGCACACAAAAA 57.452 26.923 15.10 10.12 43.25 1.94
3786 5308 8.723942 ATTTTATTTGTAGGTTGCACACAAAA 57.276 26.923 15.10 5.27 43.25 2.44
3787 5309 9.817809 TTATTTTATTTGTAGGTTGCACACAAA 57.182 25.926 14.04 14.04 43.91 2.83
3788 5310 9.988815 ATTATTTTATTTGTAGGTTGCACACAA 57.011 25.926 0.00 0.00 0.00 3.33
3789 5311 9.988815 AATTATTTTATTTGTAGGTTGCACACA 57.011 25.926 0.00 0.00 0.00 3.72
3811 5333 9.605275 CACCTGAAGATGTCTATGAAGAAATTA 57.395 33.333 0.00 0.00 29.13 1.40
3812 5334 7.066766 GCACCTGAAGATGTCTATGAAGAAATT 59.933 37.037 0.00 0.00 29.13 1.82
3813 5335 6.541641 GCACCTGAAGATGTCTATGAAGAAAT 59.458 38.462 0.00 0.00 31.89 2.17
3814 5336 5.877012 GCACCTGAAGATGTCTATGAAGAAA 59.123 40.000 0.00 0.00 32.16 2.52
3815 5337 5.423015 GCACCTGAAGATGTCTATGAAGAA 58.577 41.667 0.00 0.00 32.16 2.52
3816 5338 4.141846 GGCACCTGAAGATGTCTATGAAGA 60.142 45.833 0.00 0.00 0.00 2.87
3817 5339 4.125703 GGCACCTGAAGATGTCTATGAAG 58.874 47.826 0.00 0.00 0.00 3.02
3818 5340 4.142609 GGCACCTGAAGATGTCTATGAA 57.857 45.455 0.00 0.00 0.00 2.57
3819 5341 3.827008 GGCACCTGAAGATGTCTATGA 57.173 47.619 0.00 0.00 0.00 2.15
3834 5356 6.333057 ACATATAGATGCTCCTTGGGCACC 62.333 50.000 0.00 0.00 43.22 5.01
3835 5357 3.244700 ACATATAGATGCTCCTTGGGCAC 60.245 47.826 0.00 0.00 42.69 5.01
3836 5358 2.981784 ACATATAGATGCTCCTTGGGCA 59.018 45.455 0.00 0.00 44.05 5.36
3837 5359 3.710209 ACATATAGATGCTCCTTGGGC 57.290 47.619 0.00 0.00 36.43 5.36
3838 5360 7.170965 ACAAATACATATAGATGCTCCTTGGG 58.829 38.462 0.00 0.00 36.43 4.12
3839 5361 9.725019 TTACAAATACATATAGATGCTCCTTGG 57.275 33.333 0.00 0.00 36.43 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.