Multiple sequence alignment - TraesCS4B01G281500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G281500 chr4B 100.000 3347 0 0 1 3347 564654674 564651328 0.000000e+00 6181
1 TraesCS4B01G281500 chr4B 85.102 1329 127 35 1089 2386 564786181 564784893 0.000000e+00 1291
2 TraesCS4B01G281500 chr4B 86.936 865 68 23 2415 3259 564784897 564784058 0.000000e+00 929
3 TraesCS4B01G281500 chr4B 84.840 752 99 5 1240 1976 564395617 564394866 0.000000e+00 743
4 TraesCS4B01G281500 chr4D 94.565 2116 73 25 1159 3257 451277325 451275235 0.000000e+00 3232
5 TraesCS4B01G281500 chr4D 82.006 967 128 27 62 1006 424470790 424471732 0.000000e+00 780
6 TraesCS4B01G281500 chr4D 84.707 752 100 6 1240 1976 451178147 451177396 0.000000e+00 737
7 TraesCS4B01G281500 chr4D 89.655 116 11 1 2852 2966 451275508 451275393 2.690000e-31 147
8 TraesCS4B01G281500 chr4D 95.402 87 2 1 3255 3339 15150083 15150169 1.620000e-28 137
9 TraesCS4B01G281500 chr4D 91.489 94 6 2 1067 1159 451277448 451277356 9.750000e-26 128
10 TraesCS4B01G281500 chr4A 94.674 1915 66 13 1159 3047 15759586 15761490 0.000000e+00 2939
11 TraesCS4B01G281500 chr4A 84.574 752 101 8 1240 1976 15767365 15768116 0.000000e+00 732
12 TraesCS4B01G281500 chr4A 89.485 466 48 1 256 721 621784018 621784482 3.720000e-164 588
13 TraesCS4B01G281500 chr4A 77.699 991 132 53 62 1024 40248222 40247293 1.060000e-144 523
14 TraesCS4B01G281500 chr4A 90.291 206 10 5 3049 3252 15761587 15761784 9.210000e-66 261
15 TraesCS4B01G281500 chr4A 93.701 127 7 1 829 955 621784583 621784708 4.410000e-44 189
16 TraesCS4B01G281500 chr2D 86.168 976 95 17 60 1024 337543574 337544520 0.000000e+00 1018
17 TraesCS4B01G281500 chr1A 88.452 788 72 9 60 836 395196302 395197081 0.000000e+00 933
18 TraesCS4B01G281500 chr1A 92.347 196 14 1 829 1024 395197102 395197296 9.150000e-71 278
19 TraesCS4B01G281500 chr2A 88.310 787 73 11 60 836 473413753 473412976 0.000000e+00 926
20 TraesCS4B01G281500 chr2A 87.310 788 75 13 60 836 10337813 10337040 0.000000e+00 878
21 TraesCS4B01G281500 chr2A 92.857 196 13 1 829 1024 10337019 10336825 1.970000e-72 283
22 TraesCS4B01G281500 chr2A 92.347 196 14 1 829 1024 473412955 473412761 9.150000e-71 278
23 TraesCS4B01G281500 chr2A 91.837 98 4 3 3252 3347 712971381 712971476 2.090000e-27 134
24 TraesCS4B01G281500 chr3B 90.306 196 18 1 829 1024 13146913 13146719 4.290000e-64 255
25 TraesCS4B01G281500 chr3B 92.553 94 5 1 3256 3347 723452944 723452851 2.090000e-27 134
26 TraesCS4B01G281500 chr7D 84.293 191 29 1 1240 1430 540449236 540449047 5.700000e-43 185
27 TraesCS4B01G281500 chr7D 94.505 91 3 2 3254 3342 606659356 606659446 4.500000e-29 139
28 TraesCS4B01G281500 chr5D 94.444 90 3 1 3252 3339 447627022 447626933 1.620000e-28 137
29 TraesCS4B01G281500 chrUn 91.753 97 4 3 3251 3345 104668896 104668802 7.530000e-27 132
30 TraesCS4B01G281500 chr7A 91.753 97 5 2 3249 3343 485195295 485195200 7.530000e-27 132
31 TraesCS4B01G281500 chr7A 87.273 110 10 3 3233 3339 708359842 708359950 4.530000e-24 122
32 TraesCS4B01G281500 chr6A 92.553 94 4 2 3256 3347 103761984 103761892 7.530000e-27 132
33 TraesCS4B01G281500 chr2B 88.298 94 11 0 931 1024 154933381 154933474 2.730000e-21 113
34 TraesCS4B01G281500 chr5B 84.404 109 17 0 916 1024 586055733 586055841 1.270000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G281500 chr4B 564651328 564654674 3346 True 6181.0 6181 100.0000 1 3347 1 chr4B.!!$R2 3346
1 TraesCS4B01G281500 chr4B 564784058 564786181 2123 True 1110.0 1291 86.0190 1089 3259 2 chr4B.!!$R3 2170
2 TraesCS4B01G281500 chr4B 564394866 564395617 751 True 743.0 743 84.8400 1240 1976 1 chr4B.!!$R1 736
3 TraesCS4B01G281500 chr4D 451275235 451277448 2213 True 1169.0 3232 91.9030 1067 3257 3 chr4D.!!$R2 2190
4 TraesCS4B01G281500 chr4D 424470790 424471732 942 False 780.0 780 82.0060 62 1006 1 chr4D.!!$F2 944
5 TraesCS4B01G281500 chr4D 451177396 451178147 751 True 737.0 737 84.7070 1240 1976 1 chr4D.!!$R1 736
6 TraesCS4B01G281500 chr4A 15759586 15761784 2198 False 1600.0 2939 92.4825 1159 3252 2 chr4A.!!$F2 2093
7 TraesCS4B01G281500 chr4A 15767365 15768116 751 False 732.0 732 84.5740 1240 1976 1 chr4A.!!$F1 736
8 TraesCS4B01G281500 chr4A 40247293 40248222 929 True 523.0 523 77.6990 62 1024 1 chr4A.!!$R1 962
9 TraesCS4B01G281500 chr4A 621784018 621784708 690 False 388.5 588 91.5930 256 955 2 chr4A.!!$F3 699
10 TraesCS4B01G281500 chr2D 337543574 337544520 946 False 1018.0 1018 86.1680 60 1024 1 chr2D.!!$F1 964
11 TraesCS4B01G281500 chr1A 395196302 395197296 994 False 605.5 933 90.3995 60 1024 2 chr1A.!!$F1 964
12 TraesCS4B01G281500 chr2A 473412761 473413753 992 True 602.0 926 90.3285 60 1024 2 chr2A.!!$R2 964
13 TraesCS4B01G281500 chr2A 10336825 10337813 988 True 580.5 878 90.0835 60 1024 2 chr2A.!!$R1 964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.171903 CTTCAATTTGGCCCGCTCAG 59.828 55.0 0.0 0.0 0.0 3.35 F
1063 1158 0.391130 TCCTAACCATGCACACGAGC 60.391 55.0 0.0 0.0 0.0 5.03 F
1206 1338 0.103554 ACCAAACCCTACCCCTCCTT 60.104 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 1319 0.103554 AAGGAGGGGTAGGGTTTGGT 60.104 55.000 0.00 0.00 0.00 3.67 R
1970 2141 0.947244 GCAGTTTCACACCAGACTGG 59.053 55.000 20.45 20.45 45.02 4.00 R
2570 2757 1.004628 CACCATCCCAGAACACCATCA 59.995 52.381 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.115446 TGAGCCATCAGAGTAAAATACTTGG 58.885 40.000 2.87 2.87 39.59 3.61
25 26 6.070251 TGAGCCATCAGAGTAAAATACTTGGA 60.070 38.462 9.20 3.46 39.59 3.53
26 27 6.116126 AGCCATCAGAGTAAAATACTTGGAC 58.884 40.000 9.20 3.02 39.59 4.02
27 28 6.069963 AGCCATCAGAGTAAAATACTTGGACT 60.070 38.462 9.20 4.65 39.59 3.85
28 29 6.599638 GCCATCAGAGTAAAATACTTGGACTT 59.400 38.462 9.20 0.00 39.59 3.01
29 30 7.201652 GCCATCAGAGTAAAATACTTGGACTTC 60.202 40.741 9.20 0.00 39.59 3.01
30 31 7.281100 CCATCAGAGTAAAATACTTGGACTTCC 59.719 40.741 1.44 0.00 39.59 3.46
31 32 6.708285 TCAGAGTAAAATACTTGGACTTCCC 58.292 40.000 0.00 0.00 39.59 3.97
32 33 6.500751 TCAGAGTAAAATACTTGGACTTCCCT 59.499 38.462 0.00 0.00 39.59 4.20
33 34 7.017254 TCAGAGTAAAATACTTGGACTTCCCTT 59.983 37.037 0.00 0.00 39.59 3.95
34 35 7.334671 CAGAGTAAAATACTTGGACTTCCCTTC 59.665 40.741 0.00 0.00 39.59 3.46
35 36 7.017254 AGAGTAAAATACTTGGACTTCCCTTCA 59.983 37.037 0.00 0.00 39.59 3.02
36 37 7.523415 AGTAAAATACTTGGACTTCCCTTCAA 58.477 34.615 0.00 0.00 34.86 2.69
37 38 8.170730 AGTAAAATACTTGGACTTCCCTTCAAT 58.829 33.333 0.00 0.00 34.86 2.57
38 39 7.855784 AAAATACTTGGACTTCCCTTCAATT 57.144 32.000 0.00 0.00 35.38 2.32
39 40 7.855784 AAATACTTGGACTTCCCTTCAATTT 57.144 32.000 0.00 0.00 35.38 1.82
40 41 6.840780 ATACTTGGACTTCCCTTCAATTTG 57.159 37.500 0.00 0.00 35.38 2.32
41 42 3.897505 ACTTGGACTTCCCTTCAATTTGG 59.102 43.478 0.00 0.00 35.38 3.28
42 43 2.247358 TGGACTTCCCTTCAATTTGGC 58.753 47.619 0.00 0.00 35.38 4.52
43 44 1.550524 GGACTTCCCTTCAATTTGGCC 59.449 52.381 0.00 0.00 0.00 5.36
44 45 1.550524 GACTTCCCTTCAATTTGGCCC 59.449 52.381 0.00 0.00 0.00 5.80
45 46 0.532115 CTTCCCTTCAATTTGGCCCG 59.468 55.000 0.00 0.00 0.00 6.13
46 47 1.540435 TTCCCTTCAATTTGGCCCGC 61.540 55.000 0.00 0.00 0.00 6.13
47 48 1.984026 CCCTTCAATTTGGCCCGCT 60.984 57.895 0.00 0.00 0.00 5.52
48 49 1.512694 CCTTCAATTTGGCCCGCTC 59.487 57.895 0.00 0.00 0.00 5.03
49 50 1.250154 CCTTCAATTTGGCCCGCTCA 61.250 55.000 0.00 0.00 0.00 4.26
50 51 0.171903 CTTCAATTTGGCCCGCTCAG 59.828 55.000 0.00 0.00 0.00 3.35
51 52 1.250154 TTCAATTTGGCCCGCTCAGG 61.250 55.000 0.00 0.00 40.63 3.86
52 53 1.978617 CAATTTGGCCCGCTCAGGT 60.979 57.895 0.00 0.00 38.74 4.00
53 54 1.228862 AATTTGGCCCGCTCAGGTT 60.229 52.632 0.00 0.00 38.74 3.50
54 55 1.250840 AATTTGGCCCGCTCAGGTTC 61.251 55.000 0.00 0.00 38.74 3.62
55 56 2.142292 ATTTGGCCCGCTCAGGTTCT 62.142 55.000 0.00 0.00 38.74 3.01
56 57 2.351924 TTTGGCCCGCTCAGGTTCTT 62.352 55.000 0.00 0.00 38.74 2.52
57 58 1.485294 TTGGCCCGCTCAGGTTCTTA 61.485 55.000 0.00 0.00 38.74 2.10
58 59 1.271840 TGGCCCGCTCAGGTTCTTAT 61.272 55.000 0.00 0.00 38.74 1.73
83 84 5.240623 GTGTCACCAAGTGAAATGTAATGGA 59.759 40.000 0.00 0.00 44.49 3.41
86 87 6.150976 GTCACCAAGTGAAATGTAATGGATCA 59.849 38.462 0.00 0.00 44.49 2.92
91 92 7.121759 CCAAGTGAAATGTAATGGATCAGTTCT 59.878 37.037 0.00 0.00 38.75 3.01
155 161 1.488705 AACCCACCGCCAGAGAATGA 61.489 55.000 0.00 0.00 0.00 2.57
178 184 6.545666 TGACATATTCCTTGTTTATGCGGAAT 59.454 34.615 7.45 7.45 45.47 3.01
219 226 1.079127 CGGATGACAGGAACCGCTT 60.079 57.895 0.00 0.00 38.98 4.68
226 233 2.048127 AGGAACCGCTTGCTCGAC 60.048 61.111 0.00 0.00 0.00 4.20
227 234 2.048127 GGAACCGCTTGCTCGACT 60.048 61.111 0.00 0.00 0.00 4.18
239 246 1.634225 CTCGACTCTCGCTCGTCTC 59.366 63.158 0.00 0.00 40.21 3.36
254 261 1.272769 CGTCTCCTCGTCTTTCCCTTT 59.727 52.381 0.00 0.00 0.00 3.11
393 400 4.414956 TCTCCCCCTCCCATGCGT 62.415 66.667 0.00 0.00 0.00 5.24
403 410 2.107750 CCATGCGTCGCAGATCCT 59.892 61.111 25.78 5.13 43.65 3.24
537 546 2.661537 CGCACCTGACACGCTCAA 60.662 61.111 0.00 0.00 0.00 3.02
539 548 1.595382 GCACCTGACACGCTCAACT 60.595 57.895 0.00 0.00 0.00 3.16
656 666 2.851195 CTGGGCGCATCTAATTAAGGT 58.149 47.619 10.83 0.00 0.00 3.50
704 714 2.644887 GCAAGGAGCATGTGGTTGA 58.355 52.632 0.00 0.00 44.79 3.18
739 749 1.880796 GGTGGTTTTTGCACGCACC 60.881 57.895 0.00 0.00 33.55 5.01
748 758 2.742372 GCACGCACCGAACTCCAT 60.742 61.111 0.00 0.00 0.00 3.41
760 777 2.131183 GAACTCCATATCTGCAGCGTC 58.869 52.381 9.47 0.00 0.00 5.19
761 778 1.114627 ACTCCATATCTGCAGCGTCA 58.885 50.000 9.47 0.00 0.00 4.35
773 790 2.230266 TGCAGCGTCACAAGTACATCTA 59.770 45.455 0.00 0.00 0.00 1.98
815 836 2.040939 TGTTCCGTGGGTGTTCTTCTA 58.959 47.619 0.00 0.00 0.00 2.10
836 884 9.750125 CTTCTATACTGCAACATCAAGTACATA 57.250 33.333 0.00 0.00 0.00 2.29
847 923 9.636965 CAACATCAAGTACATATGTTCATTACG 57.363 33.333 14.77 1.60 40.83 3.18
974 1069 5.365314 ACCAAACACCAAGATGTAACCATTT 59.635 36.000 0.00 0.00 30.75 2.32
980 1075 6.721208 ACACCAAGATGTAACCATTTCATTCT 59.279 34.615 0.00 0.00 0.00 2.40
984 1079 8.306038 CCAAGATGTAACCATTTCATTCTTTGA 58.694 33.333 0.00 0.00 0.00 2.69
1015 1110 8.844244 GCTCATATCAAACATAAAGATGGAACT 58.156 33.333 0.00 0.00 37.39 3.01
1035 1130 7.982371 GAACTGATCCATTGACATTTCATTC 57.018 36.000 0.00 0.00 0.00 2.67
1036 1131 6.461110 ACTGATCCATTGACATTTCATTCC 57.539 37.500 0.00 0.00 0.00 3.01
1037 1132 5.953548 ACTGATCCATTGACATTTCATTCCA 59.046 36.000 0.00 0.00 0.00 3.53
1038 1133 6.127535 ACTGATCCATTGACATTTCATTCCAC 60.128 38.462 0.00 0.00 0.00 4.02
1039 1134 5.953548 TGATCCATTGACATTTCATTCCACT 59.046 36.000 0.00 0.00 0.00 4.00
1040 1135 6.438108 TGATCCATTGACATTTCATTCCACTT 59.562 34.615 0.00 0.00 0.00 3.16
1041 1136 6.271488 TCCATTGACATTTCATTCCACTTC 57.729 37.500 0.00 0.00 0.00 3.01
1042 1137 5.097529 CCATTGACATTTCATTCCACTTCG 58.902 41.667 0.00 0.00 0.00 3.79
1043 1138 5.335897 CCATTGACATTTCATTCCACTTCGT 60.336 40.000 0.00 0.00 0.00 3.85
1044 1139 5.766150 TTGACATTTCATTCCACTTCGTT 57.234 34.783 0.00 0.00 0.00 3.85
1045 1140 5.356882 TGACATTTCATTCCACTTCGTTC 57.643 39.130 0.00 0.00 0.00 3.95
1046 1141 4.215399 TGACATTTCATTCCACTTCGTTCC 59.785 41.667 0.00 0.00 0.00 3.62
1047 1142 4.398319 ACATTTCATTCCACTTCGTTCCT 58.602 39.130 0.00 0.00 0.00 3.36
1048 1143 5.556915 ACATTTCATTCCACTTCGTTCCTA 58.443 37.500 0.00 0.00 0.00 2.94
1049 1144 6.001460 ACATTTCATTCCACTTCGTTCCTAA 58.999 36.000 0.00 0.00 0.00 2.69
1050 1145 5.934935 TTTCATTCCACTTCGTTCCTAAC 57.065 39.130 0.00 0.00 0.00 2.34
1051 1146 3.934068 TCATTCCACTTCGTTCCTAACC 58.066 45.455 0.00 0.00 0.00 2.85
1052 1147 3.325425 TCATTCCACTTCGTTCCTAACCA 59.675 43.478 0.00 0.00 0.00 3.67
1053 1148 4.019681 TCATTCCACTTCGTTCCTAACCAT 60.020 41.667 0.00 0.00 0.00 3.55
1054 1149 3.328382 TCCACTTCGTTCCTAACCATG 57.672 47.619 0.00 0.00 0.00 3.66
1055 1150 1.737793 CCACTTCGTTCCTAACCATGC 59.262 52.381 0.00 0.00 0.00 4.06
1056 1151 2.422597 CACTTCGTTCCTAACCATGCA 58.577 47.619 0.00 0.00 0.00 3.96
1057 1152 2.159627 CACTTCGTTCCTAACCATGCAC 59.840 50.000 0.00 0.00 0.00 4.57
1058 1153 2.224426 ACTTCGTTCCTAACCATGCACA 60.224 45.455 0.00 0.00 0.00 4.57
1059 1154 1.803334 TCGTTCCTAACCATGCACAC 58.197 50.000 0.00 0.00 0.00 3.82
1060 1155 0.442310 CGTTCCTAACCATGCACACG 59.558 55.000 0.00 0.00 0.00 4.49
1061 1156 1.803334 GTTCCTAACCATGCACACGA 58.197 50.000 0.00 0.00 0.00 4.35
1062 1157 1.732259 GTTCCTAACCATGCACACGAG 59.268 52.381 0.00 0.00 0.00 4.18
1063 1158 0.391130 TCCTAACCATGCACACGAGC 60.391 55.000 0.00 0.00 0.00 5.03
1064 1159 1.695893 CCTAACCATGCACACGAGCG 61.696 60.000 0.00 0.00 37.31 5.03
1065 1160 2.296692 CTAACCATGCACACGAGCGC 62.297 60.000 0.00 0.00 37.31 5.92
1087 1182 4.097361 GGCCGTCCCTGTTCCCTC 62.097 72.222 0.00 0.00 0.00 4.30
1157 1289 0.919289 TCCTCCCAAATCCCACTCCC 60.919 60.000 0.00 0.00 0.00 4.30
1187 1319 4.572571 AAGAACCGCAACCCCGCA 62.573 61.111 0.00 0.00 0.00 5.69
1206 1338 0.103554 ACCAAACCCTACCCCTCCTT 60.104 55.000 0.00 0.00 0.00 3.36
1210 1342 2.039724 CCCTACCCCTCCTTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
1517 1658 3.965539 CTTCCACGCCCTGCTCCTG 62.966 68.421 0.00 0.00 0.00 3.86
1621 1762 2.843545 GGCACCCCACTTCCTCAA 59.156 61.111 0.00 0.00 0.00 3.02
1935 2103 3.314331 CTGCCTCCTCACCACCGT 61.314 66.667 0.00 0.00 0.00 4.83
1970 2141 2.910994 GCCCCCTGCTCATCATGC 60.911 66.667 0.00 0.00 36.87 4.06
2012 2183 3.074412 GCGTTCTTGATTCTTCCTTCCA 58.926 45.455 0.00 0.00 0.00 3.53
2200 2379 7.661536 AACTGGAGTCTACTTTATCTGCATA 57.338 36.000 0.00 0.00 0.00 3.14
2366 2550 5.869649 ACAATTAACCAGGAGCAGTTTTT 57.130 34.783 0.00 0.00 0.00 1.94
2442 2627 6.872585 ATTGACCCCAACAATGACAATTAT 57.127 33.333 0.00 0.00 36.74 1.28
2522 2707 2.541556 GGATTGTAAGAGGCGACACTC 58.458 52.381 0.00 0.00 37.77 3.51
2524 2709 1.241165 TTGTAAGAGGCGACACTCGA 58.759 50.000 0.00 0.00 43.74 4.04
2531 2716 1.390463 GAGGCGACACTCGATTTTGTC 59.610 52.381 10.48 10.48 43.74 3.18
2561 2748 0.108992 GCGACGGAGACCACAACATA 60.109 55.000 0.00 0.00 0.00 2.29
2570 2757 5.491982 GGAGACCACAACATAACTGATCTT 58.508 41.667 0.00 0.00 0.00 2.40
2575 2762 5.649395 ACCACAACATAACTGATCTTGATGG 59.351 40.000 0.00 2.37 0.00 3.51
2700 2895 6.656693 AGTTGACTAGCATCTGTAAAATTGCT 59.343 34.615 1.61 1.61 46.51 3.91
2713 2912 3.775661 AAATTGCTTACACCGCCATAC 57.224 42.857 0.00 0.00 0.00 2.39
2813 3015 1.777878 TGCTCTTGGGAGGGTGTTTTA 59.222 47.619 0.00 0.00 39.80 1.52
2839 3041 5.708736 TCTATGGATTTGCCTAAGTTGGA 57.291 39.130 0.00 0.00 37.63 3.53
2858 3060 8.331730 AGTTGGATAACATTAGGTTTGTGTAC 57.668 34.615 0.00 0.00 40.96 2.90
2941 3151 5.189539 TGATCTGTCAGGTTTGATATGGTCA 59.810 40.000 0.00 0.00 35.39 4.02
3108 3415 4.271696 TGTAGGAGTGTTGATGGAACTG 57.728 45.455 0.00 0.00 35.37 3.16
3123 3430 4.662278 TGGAACTGCAAGCCTAAATACTT 58.338 39.130 0.00 0.00 37.60 2.24
3199 3507 8.397575 TGCTTGTTAACTTTCATATGGTTGTA 57.602 30.769 7.22 0.00 0.00 2.41
3248 3557 5.351465 ACCGTGAACTTGCTTATTCAGTATG 59.649 40.000 0.00 0.00 35.55 2.39
3253 3562 6.763135 TGAACTTGCTTATTCAGTATGGCTAG 59.237 38.462 0.00 0.00 36.16 3.42
3259 3568 6.096695 GCTTATTCAGTATGGCTAGCTACTC 58.903 44.000 15.72 5.48 36.16 2.59
3260 3569 6.591750 TTATTCAGTATGGCTAGCTACTCC 57.408 41.667 15.72 0.00 36.16 3.85
3261 3570 2.877866 TCAGTATGGCTAGCTACTCCC 58.122 52.381 15.72 0.00 36.16 4.30
3262 3571 2.447429 TCAGTATGGCTAGCTACTCCCT 59.553 50.000 15.72 0.00 36.16 4.20
3263 3572 2.823154 CAGTATGGCTAGCTACTCCCTC 59.177 54.545 15.72 0.00 0.00 4.30
3264 3573 2.172679 GTATGGCTAGCTACTCCCTCC 58.827 57.143 15.72 0.00 0.00 4.30
3265 3574 0.540830 ATGGCTAGCTACTCCCTCCG 60.541 60.000 15.72 0.00 0.00 4.63
3266 3575 1.152715 GGCTAGCTACTCCCTCCGT 60.153 63.158 15.72 0.00 0.00 4.69
3267 3576 1.174078 GGCTAGCTACTCCCTCCGTC 61.174 65.000 15.72 0.00 0.00 4.79
3268 3577 1.174078 GCTAGCTACTCCCTCCGTCC 61.174 65.000 7.70 0.00 0.00 4.79
3269 3578 0.537828 CTAGCTACTCCCTCCGTCCC 60.538 65.000 0.00 0.00 0.00 4.46
3270 3579 1.284111 TAGCTACTCCCTCCGTCCCA 61.284 60.000 0.00 0.00 0.00 4.37
3271 3580 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
3272 3581 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
3273 3582 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
3274 3583 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
3275 3584 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
3276 3585 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3277 3586 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3278 3587 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3279 3588 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3280 3589 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3281 3590 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3282 3591 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3283 3592 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3284 3593 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3285 3594 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3286 3595 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3287 3596 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3288 3597 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3340 3649 2.499566 TGGGACAGAGGGAGTAGGT 58.500 57.895 0.00 0.00 0.00 3.08
3341 3650 0.790993 TGGGACAGAGGGAGTAGGTT 59.209 55.000 0.00 0.00 0.00 3.50
3342 3651 1.196012 GGGACAGAGGGAGTAGGTTG 58.804 60.000 0.00 0.00 0.00 3.77
3343 3652 0.537653 GGACAGAGGGAGTAGGTTGC 59.462 60.000 0.00 0.00 0.00 4.17
3344 3653 1.562783 GACAGAGGGAGTAGGTTGCT 58.437 55.000 0.00 0.00 0.00 3.91
3345 3654 1.903183 GACAGAGGGAGTAGGTTGCTT 59.097 52.381 0.00 0.00 0.00 3.91
3346 3655 2.303311 GACAGAGGGAGTAGGTTGCTTT 59.697 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.070251 TCCAAGTATTTTACTCTGATGGCTCA 60.070 38.462 0.00 0.00 38.26 4.26
1 2 6.258947 GTCCAAGTATTTTACTCTGATGGCTC 59.741 42.308 0.00 0.00 38.26 4.70
2 3 6.069963 AGTCCAAGTATTTTACTCTGATGGCT 60.070 38.462 0.00 0.00 38.26 4.75
3 4 6.116126 AGTCCAAGTATTTTACTCTGATGGC 58.884 40.000 0.00 0.00 38.26 4.40
4 5 7.281100 GGAAGTCCAAGTATTTTACTCTGATGG 59.719 40.741 0.00 0.00 38.26 3.51
5 6 7.281100 GGGAAGTCCAAGTATTTTACTCTGATG 59.719 40.741 0.00 0.00 38.26 3.07
6 7 7.182930 AGGGAAGTCCAAGTATTTTACTCTGAT 59.817 37.037 0.00 0.00 38.26 2.90
7 8 6.500751 AGGGAAGTCCAAGTATTTTACTCTGA 59.499 38.462 0.00 0.00 38.26 3.27
8 9 6.712276 AGGGAAGTCCAAGTATTTTACTCTG 58.288 40.000 0.00 0.00 38.26 3.35
9 10 6.954352 AGGGAAGTCCAAGTATTTTACTCT 57.046 37.500 0.00 0.00 38.26 3.24
10 11 7.166167 TGAAGGGAAGTCCAAGTATTTTACTC 58.834 38.462 0.00 0.00 38.26 2.59
11 12 7.086685 TGAAGGGAAGTCCAAGTATTTTACT 57.913 36.000 0.00 0.00 41.73 2.24
12 13 7.754851 TTGAAGGGAAGTCCAAGTATTTTAC 57.245 36.000 0.00 0.00 38.24 2.01
13 14 8.950007 AATTGAAGGGAAGTCCAAGTATTTTA 57.050 30.769 0.00 0.00 38.24 1.52
14 15 7.855784 AATTGAAGGGAAGTCCAAGTATTTT 57.144 32.000 0.00 0.00 38.24 1.82
15 16 7.256296 CCAAATTGAAGGGAAGTCCAAGTATTT 60.256 37.037 0.00 0.00 38.24 1.40
16 17 6.211384 CCAAATTGAAGGGAAGTCCAAGTATT 59.789 38.462 0.00 0.00 38.24 1.89
17 18 5.716703 CCAAATTGAAGGGAAGTCCAAGTAT 59.283 40.000 0.00 0.00 38.24 2.12
18 19 5.076873 CCAAATTGAAGGGAAGTCCAAGTA 58.923 41.667 0.00 0.00 38.24 2.24
19 20 3.897505 CCAAATTGAAGGGAAGTCCAAGT 59.102 43.478 0.00 0.00 38.24 3.16
20 21 3.306294 GCCAAATTGAAGGGAAGTCCAAG 60.306 47.826 0.00 0.00 38.24 3.61
21 22 2.632512 GCCAAATTGAAGGGAAGTCCAA 59.367 45.455 0.00 0.00 38.24 3.53
22 23 2.247358 GCCAAATTGAAGGGAAGTCCA 58.753 47.619 0.00 0.00 38.24 4.02
23 24 1.550524 GGCCAAATTGAAGGGAAGTCC 59.449 52.381 0.00 0.00 0.00 3.85
24 25 1.550524 GGGCCAAATTGAAGGGAAGTC 59.449 52.381 4.39 0.00 0.00 3.01
25 26 1.644509 GGGCCAAATTGAAGGGAAGT 58.355 50.000 4.39 0.00 0.00 3.01
26 27 0.532115 CGGGCCAAATTGAAGGGAAG 59.468 55.000 4.39 0.00 0.00 3.46
27 28 1.540435 GCGGGCCAAATTGAAGGGAA 61.540 55.000 4.39 0.00 0.00 3.97
28 29 1.981853 GCGGGCCAAATTGAAGGGA 60.982 57.895 4.39 0.00 0.00 4.20
29 30 1.948721 GAGCGGGCCAAATTGAAGGG 61.949 60.000 4.39 0.00 0.00 3.95
30 31 1.250154 TGAGCGGGCCAAATTGAAGG 61.250 55.000 4.39 0.00 0.00 3.46
31 32 0.171903 CTGAGCGGGCCAAATTGAAG 59.828 55.000 4.39 0.00 0.00 3.02
32 33 1.250154 CCTGAGCGGGCCAAATTGAA 61.250 55.000 4.39 0.00 0.00 2.69
33 34 1.678635 CCTGAGCGGGCCAAATTGA 60.679 57.895 4.39 0.00 0.00 2.57
34 35 1.535204 AACCTGAGCGGGCCAAATTG 61.535 55.000 4.39 0.00 36.97 2.32
35 36 1.228862 AACCTGAGCGGGCCAAATT 60.229 52.632 4.39 0.00 36.97 1.82
36 37 1.678970 GAACCTGAGCGGGCCAAAT 60.679 57.895 4.39 0.00 36.97 2.32
37 38 2.282180 GAACCTGAGCGGGCCAAA 60.282 61.111 4.39 0.00 36.97 3.28
38 39 1.485294 TAAGAACCTGAGCGGGCCAA 61.485 55.000 4.39 0.00 36.97 4.52
39 40 1.271840 ATAAGAACCTGAGCGGGCCA 61.272 55.000 4.39 0.00 36.97 5.36
40 41 0.815615 CATAAGAACCTGAGCGGGCC 60.816 60.000 0.00 0.00 36.97 5.80
41 42 0.107654 ACATAAGAACCTGAGCGGGC 60.108 55.000 0.00 0.00 36.97 6.13
42 43 1.066143 ACACATAAGAACCTGAGCGGG 60.066 52.381 0.00 0.00 36.97 6.13
43 44 2.271800 GACACATAAGAACCTGAGCGG 58.728 52.381 0.00 0.00 39.35 5.52
44 45 2.668457 GTGACACATAAGAACCTGAGCG 59.332 50.000 0.00 0.00 0.00 5.03
45 46 3.003480 GGTGACACATAAGAACCTGAGC 58.997 50.000 8.08 0.00 0.00 4.26
46 47 4.271696 TGGTGACACATAAGAACCTGAG 57.728 45.455 8.08 0.00 33.40 3.35
47 48 4.102524 ACTTGGTGACACATAAGAACCTGA 59.897 41.667 21.59 0.00 42.67 3.86
48 49 4.214119 CACTTGGTGACACATAAGAACCTG 59.786 45.833 21.59 10.38 42.67 4.00
49 50 4.102524 TCACTTGGTGACACATAAGAACCT 59.897 41.667 21.59 3.88 42.67 3.50
50 51 4.385825 TCACTTGGTGACACATAAGAACC 58.614 43.478 21.59 0.00 42.67 3.62
51 52 6.371809 TTTCACTTGGTGACACATAAGAAC 57.628 37.500 21.59 0.02 42.60 3.01
52 53 6.545666 ACATTTCACTTGGTGACACATAAGAA 59.454 34.615 21.59 10.64 42.60 2.52
53 54 6.061441 ACATTTCACTTGGTGACACATAAGA 58.939 36.000 21.59 6.03 42.60 2.10
54 55 6.317789 ACATTTCACTTGGTGACACATAAG 57.682 37.500 16.04 16.04 42.60 1.73
55 56 7.809546 TTACATTTCACTTGGTGACACATAA 57.190 32.000 8.08 1.30 42.60 1.90
56 57 7.094420 CCATTACATTTCACTTGGTGACACATA 60.094 37.037 8.08 0.00 42.60 2.29
57 58 6.294675 CCATTACATTTCACTTGGTGACACAT 60.295 38.462 8.08 0.00 42.60 3.21
58 59 5.009510 CCATTACATTTCACTTGGTGACACA 59.990 40.000 8.08 0.00 42.60 3.72
91 92 2.292521 ACTAGAATGAGCTCTGGGGACA 60.293 50.000 16.19 0.00 39.59 4.02
178 184 4.870426 GCTCGATTTGAAGGTATCACTTGA 59.130 41.667 0.00 0.00 37.92 3.02
219 226 2.741726 GACGAGCGAGAGTCGAGCA 61.742 63.158 13.79 0.00 43.74 4.26
226 233 1.758319 GACGAGGAGACGAGCGAGAG 61.758 65.000 0.00 0.00 37.03 3.20
227 234 1.810441 GACGAGGAGACGAGCGAGA 60.810 63.158 0.00 0.00 37.03 4.04
239 246 2.005560 GCCGTAAAGGGAAAGACGAGG 61.006 57.143 0.00 0.00 41.48 4.63
265 272 0.035915 GCAAGGTTGGGGAGAGAGAC 60.036 60.000 0.00 0.00 0.00 3.36
270 277 3.565214 TGCGCAAGGTTGGGGAGA 61.565 61.111 8.16 0.00 40.98 3.71
388 395 0.529337 CAGAAGGATCTGCGACGCAT 60.529 55.000 24.71 9.73 46.11 4.73
442 449 3.049674 CAAGTCATGGCCGCACGT 61.050 61.111 0.00 0.00 0.00 4.49
537 546 2.359967 GCCCGACCTCCTTGCTAGT 61.360 63.158 0.00 0.00 0.00 2.57
539 548 3.458163 CGCCCGACCTCCTTGCTA 61.458 66.667 0.00 0.00 0.00 3.49
603 612 4.142665 CCGACTGAAGAATACGAGTGAGAA 60.143 45.833 0.00 0.00 0.00 2.87
686 696 0.242017 GTCAACCACATGCTCCTTGC 59.758 55.000 0.00 0.00 43.25 4.01
704 714 1.667830 CCACGGCGAATGTCACTGT 60.668 57.895 16.62 0.00 0.00 3.55
739 749 1.135046 CGCTGCAGATATGGAGTTCG 58.865 55.000 20.43 2.99 0.00 3.95
748 758 2.230266 TGTACTTGTGACGCTGCAGATA 59.770 45.455 20.43 0.00 0.00 1.98
815 836 8.737168 AACATATGTACTTGATGTTGCAGTAT 57.263 30.769 9.21 0.00 41.17 2.12
836 884 7.151976 TGGATTACATCGATCGTAATGAACAT 58.848 34.615 24.90 10.28 39.16 2.71
847 923 7.015226 TGTTGAACATTGGATTACATCGATC 57.985 36.000 0.00 0.00 0.00 3.69
987 1082 8.750515 TCCATCTTTATGTTTGATATGAGCAA 57.249 30.769 0.00 0.00 0.00 3.91
996 1091 7.630242 GGATCAGTTCCATCTTTATGTTTGA 57.370 36.000 0.00 0.00 44.74 2.69
1015 1110 5.953548 AGTGGAATGAAATGTCAATGGATCA 59.046 36.000 0.00 0.00 37.30 2.92
1018 1113 5.106197 CGAAGTGGAATGAAATGTCAATGGA 60.106 40.000 0.00 0.00 37.30 3.41
1024 1119 4.455877 AGGAACGAAGTGGAATGAAATGTC 59.544 41.667 0.00 0.00 45.00 3.06
1025 1120 4.398319 AGGAACGAAGTGGAATGAAATGT 58.602 39.130 0.00 0.00 45.00 2.71
1026 1121 6.314784 GTTAGGAACGAAGTGGAATGAAATG 58.685 40.000 0.00 0.00 45.00 2.32
1027 1122 5.414765 GGTTAGGAACGAAGTGGAATGAAAT 59.585 40.000 0.00 0.00 45.00 2.17
1028 1123 4.758165 GGTTAGGAACGAAGTGGAATGAAA 59.242 41.667 0.00 0.00 45.00 2.69
1029 1124 4.202377 TGGTTAGGAACGAAGTGGAATGAA 60.202 41.667 0.00 0.00 45.00 2.57
1030 1125 3.325425 TGGTTAGGAACGAAGTGGAATGA 59.675 43.478 0.00 0.00 45.00 2.57
1031 1126 3.670625 TGGTTAGGAACGAAGTGGAATG 58.329 45.455 0.00 0.00 45.00 2.67
1032 1127 4.261801 CATGGTTAGGAACGAAGTGGAAT 58.738 43.478 0.00 0.00 45.00 3.01
1033 1128 3.670625 CATGGTTAGGAACGAAGTGGAA 58.329 45.455 0.00 0.00 45.00 3.53
1034 1129 2.614481 GCATGGTTAGGAACGAAGTGGA 60.614 50.000 0.00 0.00 45.00 4.02
1035 1130 1.737793 GCATGGTTAGGAACGAAGTGG 59.262 52.381 0.00 0.00 45.00 4.00
1036 1131 2.159627 GTGCATGGTTAGGAACGAAGTG 59.840 50.000 0.00 0.00 45.00 3.16
1038 1133 2.159627 GTGTGCATGGTTAGGAACGAAG 59.840 50.000 0.00 0.00 0.00 3.79
1039 1134 2.147958 GTGTGCATGGTTAGGAACGAA 58.852 47.619 0.00 0.00 0.00 3.85
1040 1135 1.803334 GTGTGCATGGTTAGGAACGA 58.197 50.000 0.00 0.00 0.00 3.85
1041 1136 0.442310 CGTGTGCATGGTTAGGAACG 59.558 55.000 0.00 0.00 0.00 3.95
1042 1137 1.732259 CTCGTGTGCATGGTTAGGAAC 59.268 52.381 0.00 0.00 0.00 3.62
1043 1138 1.943968 GCTCGTGTGCATGGTTAGGAA 60.944 52.381 0.00 0.00 0.00 3.36
1044 1139 0.391130 GCTCGTGTGCATGGTTAGGA 60.391 55.000 0.00 0.00 0.00 2.94
1045 1140 1.695893 CGCTCGTGTGCATGGTTAGG 61.696 60.000 0.00 0.00 0.00 2.69
1046 1141 1.709760 CGCTCGTGTGCATGGTTAG 59.290 57.895 0.00 0.00 0.00 2.34
1047 1142 3.869187 CGCTCGTGTGCATGGTTA 58.131 55.556 0.00 0.00 0.00 2.85
1076 1171 3.717294 CGGTGGGAGGGAACAGGG 61.717 72.222 0.00 0.00 0.00 4.45
1077 1172 4.410400 GCGGTGGGAGGGAACAGG 62.410 72.222 0.00 0.00 0.00 4.00
1087 1182 4.446413 GTAGTCACGGGCGGTGGG 62.446 72.222 22.77 0.92 46.96 4.61
1141 1242 1.933812 GGGGGAGTGGGATTTGGGA 60.934 63.158 0.00 0.00 0.00 4.37
1187 1319 0.103554 AAGGAGGGGTAGGGTTTGGT 60.104 55.000 0.00 0.00 0.00 3.67
1935 2103 1.556911 GGCCTCATCTTCCTCTGACAA 59.443 52.381 0.00 0.00 0.00 3.18
1970 2141 0.947244 GCAGTTTCACACCAGACTGG 59.053 55.000 20.45 20.45 45.02 4.00
2012 2183 3.753272 CCTCAGGTTCACATGAAACGAAT 59.247 43.478 0.00 0.00 45.94 3.34
2200 2379 7.681939 AATTGTAACGAGTAATTGGACACAT 57.318 32.000 0.00 0.00 0.00 3.21
2366 2550 6.073058 GCAGTGACACATCATTGACTCTTTAA 60.073 38.462 8.59 0.00 43.48 1.52
2442 2627 8.689251 TCGAATGAACACAACAAAACAAAATA 57.311 26.923 0.00 0.00 0.00 1.40
2522 2707 3.236816 GCACAACTCATGGACAAAATCG 58.763 45.455 0.00 0.00 0.00 3.34
2524 2709 2.884012 TCGCACAACTCATGGACAAAAT 59.116 40.909 0.00 0.00 0.00 1.82
2531 2716 1.354337 CTCCGTCGCACAACTCATGG 61.354 60.000 0.00 0.00 0.00 3.66
2561 2748 4.330250 CCAGAACACCATCAAGATCAGTT 58.670 43.478 0.00 0.00 0.00 3.16
2570 2757 1.004628 CACCATCCCAGAACACCATCA 59.995 52.381 0.00 0.00 0.00 3.07
2575 2762 4.002797 GGCACCATCCCAGAACAC 57.997 61.111 0.00 0.00 0.00 3.32
2593 2780 1.171308 CCATCAGCTTTGGTGTGGAG 58.829 55.000 4.54 0.00 35.72 3.86
2772 2974 4.762251 GCAAGAAACTGTAACCTTCATCCT 59.238 41.667 0.00 0.00 0.00 3.24
2813 3015 8.448008 TCCAACTTAGGCAAATCCATAGATAAT 58.552 33.333 0.00 0.00 37.29 1.28
2858 3060 5.571784 ACACATCTGATAGCAAACAATGG 57.428 39.130 0.00 0.00 0.00 3.16
2960 3170 2.821969 GGCTCATTGACAGTTCCAACAT 59.178 45.455 0.00 0.00 0.00 2.71
3108 3415 6.258899 GCAACTTAGAAGTATTTAGGCTTGC 58.741 40.000 0.00 0.00 38.57 4.01
3123 3430 5.874810 CAGTAGCAGTAATTGGCAACTTAGA 59.125 40.000 0.00 0.00 37.61 2.10
3199 3507 9.982651 GTCTAATACACATACTTCCACACATAT 57.017 33.333 0.00 0.00 0.00 1.78
3248 3557 1.152715 ACGGAGGGAGTAGCTAGCC 60.153 63.158 12.13 0.00 0.00 3.93
3253 3562 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
3259 3568 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3260 3569 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3261 3570 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3262 3571 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3263 3572 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3264 3573 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3302 3611 9.983024 TGTCCCATAATATAAGAACCTTTTTCA 57.017 29.630 0.00 0.00 0.00 2.69
3305 3614 9.853177 CTCTGTCCCATAATATAAGAACCTTTT 57.147 33.333 0.00 0.00 0.00 2.27
3306 3615 8.440771 CCTCTGTCCCATAATATAAGAACCTTT 58.559 37.037 0.00 0.00 0.00 3.11
3307 3616 7.017651 CCCTCTGTCCCATAATATAAGAACCTT 59.982 40.741 0.00 0.00 0.00 3.50
3308 3617 6.502158 CCCTCTGTCCCATAATATAAGAACCT 59.498 42.308 0.00 0.00 0.00 3.50
3309 3618 6.500751 TCCCTCTGTCCCATAATATAAGAACC 59.499 42.308 0.00 0.00 0.00 3.62
3310 3619 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
3311 3620 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3312 3621 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3313 3622 7.343316 CCTACTCCCTCTGTCCCATAATATAAG 59.657 44.444 0.00 0.00 0.00 1.73
3314 3623 7.189794 CCTACTCCCTCTGTCCCATAATATAA 58.810 42.308 0.00 0.00 0.00 0.98
3315 3624 6.279682 ACCTACTCCCTCTGTCCCATAATATA 59.720 42.308 0.00 0.00 0.00 0.86
3316 3625 5.078006 ACCTACTCCCTCTGTCCCATAATAT 59.922 44.000 0.00 0.00 0.00 1.28
3317 3626 4.422592 ACCTACTCCCTCTGTCCCATAATA 59.577 45.833 0.00 0.00 0.00 0.98
3318 3627 3.210074 ACCTACTCCCTCTGTCCCATAAT 59.790 47.826 0.00 0.00 0.00 1.28
3319 3628 2.590611 ACCTACTCCCTCTGTCCCATAA 59.409 50.000 0.00 0.00 0.00 1.90
3320 3629 2.224077 ACCTACTCCCTCTGTCCCATA 58.776 52.381 0.00 0.00 0.00 2.74
3321 3630 1.019650 ACCTACTCCCTCTGTCCCAT 58.980 55.000 0.00 0.00 0.00 4.00
3322 3631 0.790993 AACCTACTCCCTCTGTCCCA 59.209 55.000 0.00 0.00 0.00 4.37
3323 3632 1.196012 CAACCTACTCCCTCTGTCCC 58.804 60.000 0.00 0.00 0.00 4.46
3324 3633 0.537653 GCAACCTACTCCCTCTGTCC 59.462 60.000 0.00 0.00 0.00 4.02
3325 3634 1.562783 AGCAACCTACTCCCTCTGTC 58.437 55.000 0.00 0.00 0.00 3.51
3326 3635 2.031495 AAGCAACCTACTCCCTCTGT 57.969 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.