Multiple sequence alignment - TraesCS4B01G280200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G280200 chr4B 100.000 3485 0 0 1 3485 562930278 562933762 0.000000e+00 6436.0
1 TraesCS4B01G280200 chr4B 91.628 215 16 1 1819 2031 218936856 218937070 2.630000e-76 296.0
2 TraesCS4B01G280200 chr4B 88.068 176 14 2 2033 2208 218937104 218937272 5.900000e-48 202.0
3 TraesCS4B01G280200 chr4D 84.118 1486 96 62 2079 3485 450152584 450154008 0.000000e+00 1308.0
4 TraesCS4B01G280200 chr4D 96.422 587 20 1 1438 2024 450151794 450152379 0.000000e+00 966.0
5 TraesCS4B01G280200 chr4D 86.628 516 35 15 845 1336 450151231 450151736 1.100000e-149 540.0
6 TraesCS4B01G280200 chr4D 85.227 88 13 0 3377 3464 95881745 95881658 1.330000e-14 91.6
7 TraesCS4B01G280200 chr4A 88.740 897 63 16 2613 3485 16501302 16500420 0.000000e+00 1062.0
8 TraesCS4B01G280200 chr4A 88.867 503 31 5 2044 2525 16501934 16501436 2.320000e-166 595.0
9 TraesCS4B01G280200 chr4A 88.251 383 20 12 1621 2001 16502644 16502285 5.340000e-118 435.0
10 TraesCS4B01G280200 chr4A 85.185 378 31 10 794 1148 16503346 16502971 7.110000e-97 364.0
11 TraesCS4B01G280200 chr4A 95.302 149 7 0 1438 1586 16502786 16502638 1.620000e-58 237.0
12 TraesCS4B01G280200 chr4A 96.154 130 5 0 1191 1320 16502973 16502844 2.720000e-51 213.0
13 TraesCS4B01G280200 chr2A 87.500 656 66 11 61 703 2742397 2741745 0.000000e+00 743.0
14 TraesCS4B01G280200 chr2A 94.483 145 1 3 2033 2177 317993696 317993833 2.110000e-52 217.0
15 TraesCS4B01G280200 chr2A 92.414 145 4 3 2033 2177 259613669 259613806 2.120000e-47 200.0
16 TraesCS4B01G280200 chr7A 86.647 674 68 15 53 708 142951047 142950378 0.000000e+00 726.0
17 TraesCS4B01G280200 chr7A 93.007 143 3 3 2035 2177 115553942 115554077 5.900000e-48 202.0
18 TraesCS4B01G280200 chr2D 86.801 644 70 10 66 697 534162640 534163280 0.000000e+00 704.0
19 TraesCS4B01G280200 chr2D 87.179 624 62 13 89 700 131775049 131775666 0.000000e+00 693.0
20 TraesCS4B01G280200 chr1D 86.574 648 67 13 66 701 272536518 272535879 0.000000e+00 697.0
21 TraesCS4B01G280200 chr1D 86.747 83 8 2 3377 3457 260320893 260320974 4.790000e-14 89.8
22 TraesCS4B01G280200 chr7D 86.191 659 70 14 59 704 58135733 58136383 0.000000e+00 693.0
23 TraesCS4B01G280200 chr3D 86.399 647 69 11 71 702 47748033 47748675 0.000000e+00 689.0
24 TraesCS4B01G280200 chr3D 85.057 87 13 0 3388 3474 5879445 5879359 4.790000e-14 89.8
25 TraesCS4B01G280200 chr3D 100.000 32 0 0 3323 3354 571902422 571902453 3.760000e-05 60.2
26 TraesCS4B01G280200 chr6A 86.392 632 71 10 87 706 497996921 497996293 0.000000e+00 676.0
27 TraesCS4B01G280200 chr5B 86.000 650 70 13 61 696 668107156 668107798 0.000000e+00 676.0
28 TraesCS4B01G280200 chr5B 93.103 145 3 3 2033 2177 547255698 547255561 4.560000e-49 206.0
29 TraesCS4B01G280200 chr5B 87.302 63 8 0 706 768 554809954 554810016 4.830000e-09 73.1
30 TraesCS4B01G280200 chr2B 93.750 176 4 3 2033 2208 698590281 698590113 1.240000e-64 257.0
31 TraesCS4B01G280200 chr2B 90.909 154 12 1 1880 2031 698590468 698590315 4.560000e-49 206.0
32 TraesCS4B01G280200 chr2B 85.393 89 12 1 3379 3466 88430005 88429917 1.330000e-14 91.6
33 TraesCS4B01G280200 chr3B 93.865 163 4 2 2046 2208 727506208 727506364 1.250000e-59 241.0
34 TraesCS4B01G280200 chr3B 90.608 181 9 4 1853 2031 727505988 727506162 2.090000e-57 233.0
35 TraesCS4B01G280200 chr3B 86.792 159 18 2 1106 1264 707041141 707040986 1.290000e-39 174.0
36 TraesCS4B01G280200 chr3B 95.238 63 3 0 3315 3377 72459906 72459968 2.210000e-17 100.0
37 TraesCS4B01G280200 chr3B 86.420 81 11 0 3377 3457 556538502 556538582 4.790000e-14 89.8
38 TraesCS4B01G280200 chr6B 88.636 176 13 3 2033 2208 16906528 16906360 1.270000e-49 207.0
39 TraesCS4B01G280200 chr5D 86.585 82 11 0 3377 3458 251307786 251307867 1.330000e-14 91.6
40 TraesCS4B01G280200 chr5D 90.323 62 6 0 3315 3376 251307693 251307754 8.020000e-12 82.4
41 TraesCS4B01G280200 chr7B 85.227 88 11 2 3377 3463 443312353 443312267 4.790000e-14 89.8
42 TraesCS4B01G280200 chr6D 90.164 61 6 0 3315 3375 8112869 8112929 2.880000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G280200 chr4B 562930278 562933762 3484 False 6436.000000 6436 100.0000 1 3485 1 chr4B.!!$F1 3484
1 TraesCS4B01G280200 chr4D 450151231 450154008 2777 False 938.000000 1308 89.0560 845 3485 3 chr4D.!!$F1 2640
2 TraesCS4B01G280200 chr4A 16500420 16503346 2926 True 484.333333 1062 90.4165 794 3485 6 chr4A.!!$R1 2691
3 TraesCS4B01G280200 chr2A 2741745 2742397 652 True 743.000000 743 87.5000 61 703 1 chr2A.!!$R1 642
4 TraesCS4B01G280200 chr7A 142950378 142951047 669 True 726.000000 726 86.6470 53 708 1 chr7A.!!$R1 655
5 TraesCS4B01G280200 chr2D 534162640 534163280 640 False 704.000000 704 86.8010 66 697 1 chr2D.!!$F2 631
6 TraesCS4B01G280200 chr2D 131775049 131775666 617 False 693.000000 693 87.1790 89 700 1 chr2D.!!$F1 611
7 TraesCS4B01G280200 chr1D 272535879 272536518 639 True 697.000000 697 86.5740 66 701 1 chr1D.!!$R1 635
8 TraesCS4B01G280200 chr7D 58135733 58136383 650 False 693.000000 693 86.1910 59 704 1 chr7D.!!$F1 645
9 TraesCS4B01G280200 chr3D 47748033 47748675 642 False 689.000000 689 86.3990 71 702 1 chr3D.!!$F1 631
10 TraesCS4B01G280200 chr6A 497996293 497996921 628 True 676.000000 676 86.3920 87 706 1 chr6A.!!$R1 619
11 TraesCS4B01G280200 chr5B 668107156 668107798 642 False 676.000000 676 86.0000 61 696 1 chr5B.!!$F2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.238025 TTACGCACGTCTACGCAAGA 59.762 50.0 0.00 0.00 44.43 3.02 F
1083 1128 0.037139 ATGCCGTGCAAGGTAACGTA 60.037 50.0 20.23 1.05 43.62 3.57 F
1421 1495 0.039798 CTGCTGCGTTTGTGCTCATT 60.040 50.0 0.00 0.00 35.36 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1149 0.037326 AACGCGCAGAAAGGAGATGA 60.037 50.0 5.73 0.0 0.00 2.92 R
2069 2501 0.179132 CAACAACAGCAGCAACAGCA 60.179 50.0 0.00 0.0 0.00 4.41 R
3231 3787 0.390860 CGAGCATAGGACCTCCCAAG 59.609 60.0 0.00 0.0 37.41 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.971245 ATCTCTCTTTCAGGCGTTTCT 57.029 42.857 0.00 0.00 0.00 2.52
23 24 3.753294 TCTCTCTTTCAGGCGTTTCTT 57.247 42.857 0.00 0.00 0.00 2.52
24 25 3.654414 TCTCTCTTTCAGGCGTTTCTTC 58.346 45.455 0.00 0.00 0.00 2.87
25 26 2.739379 CTCTCTTTCAGGCGTTTCTTCC 59.261 50.000 0.00 0.00 0.00 3.46
26 27 2.368875 TCTCTTTCAGGCGTTTCTTCCT 59.631 45.455 0.00 0.00 0.00 3.36
27 28 2.739379 CTCTTTCAGGCGTTTCTTCCTC 59.261 50.000 0.00 0.00 0.00 3.71
28 29 2.104111 TCTTTCAGGCGTTTCTTCCTCA 59.896 45.455 0.00 0.00 0.00 3.86
29 30 2.631160 TTCAGGCGTTTCTTCCTCAA 57.369 45.000 0.00 0.00 0.00 3.02
30 31 2.631160 TCAGGCGTTTCTTCCTCAAA 57.369 45.000 0.00 0.00 0.00 2.69
31 32 2.925724 TCAGGCGTTTCTTCCTCAAAA 58.074 42.857 0.00 0.00 0.00 2.44
32 33 3.283751 TCAGGCGTTTCTTCCTCAAAAA 58.716 40.909 0.00 0.00 0.00 1.94
33 34 3.888930 TCAGGCGTTTCTTCCTCAAAAAT 59.111 39.130 0.00 0.00 0.00 1.82
34 35 5.067273 TCAGGCGTTTCTTCCTCAAAAATA 58.933 37.500 0.00 0.00 0.00 1.40
35 36 5.710099 TCAGGCGTTTCTTCCTCAAAAATAT 59.290 36.000 0.00 0.00 0.00 1.28
36 37 6.208599 TCAGGCGTTTCTTCCTCAAAAATATT 59.791 34.615 0.00 0.00 0.00 1.28
37 38 7.392113 TCAGGCGTTTCTTCCTCAAAAATATTA 59.608 33.333 0.00 0.00 0.00 0.98
38 39 7.484959 CAGGCGTTTCTTCCTCAAAAATATTAC 59.515 37.037 0.00 0.00 0.00 1.89
39 40 6.468000 GGCGTTTCTTCCTCAAAAATATTACG 59.532 38.462 0.00 0.00 0.00 3.18
40 41 6.021704 GCGTTTCTTCCTCAAAAATATTACGC 60.022 38.462 7.51 7.51 40.69 4.42
41 42 7.018826 CGTTTCTTCCTCAAAAATATTACGCA 58.981 34.615 0.00 0.00 0.00 5.24
42 43 7.007099 CGTTTCTTCCTCAAAAATATTACGCAC 59.993 37.037 0.00 0.00 0.00 5.34
43 44 6.102006 TCTTCCTCAAAAATATTACGCACG 57.898 37.500 0.00 0.00 0.00 5.34
44 45 5.640357 TCTTCCTCAAAAATATTACGCACGT 59.360 36.000 0.00 0.00 0.00 4.49
45 46 5.459110 TCCTCAAAAATATTACGCACGTC 57.541 39.130 0.00 0.00 0.00 4.34
46 47 5.172934 TCCTCAAAAATATTACGCACGTCT 58.827 37.500 0.00 0.00 0.00 4.18
47 48 6.331845 TCCTCAAAAATATTACGCACGTCTA 58.668 36.000 0.00 0.00 0.00 2.59
48 49 6.254157 TCCTCAAAAATATTACGCACGTCTAC 59.746 38.462 0.00 0.00 0.00 2.59
49 50 6.011811 TCAAAAATATTACGCACGTCTACG 57.988 37.500 0.00 0.04 46.33 3.51
50 51 4.427438 AAAATATTACGCACGTCTACGC 57.573 40.909 0.00 0.00 44.43 4.42
51 52 2.761392 ATATTACGCACGTCTACGCA 57.239 45.000 0.00 0.00 44.43 5.24
52 53 2.541055 TATTACGCACGTCTACGCAA 57.459 45.000 0.00 0.00 44.43 4.85
53 54 1.265568 ATTACGCACGTCTACGCAAG 58.734 50.000 0.00 0.00 44.43 4.01
54 55 0.238025 TTACGCACGTCTACGCAAGA 59.762 50.000 0.00 0.00 44.43 3.02
55 56 0.448990 TACGCACGTCTACGCAAGAT 59.551 50.000 0.00 0.00 44.43 2.40
56 57 0.448990 ACGCACGTCTACGCAAGATA 59.551 50.000 1.74 0.00 44.43 1.98
57 58 1.065102 ACGCACGTCTACGCAAGATAT 59.935 47.619 1.74 0.00 44.43 1.63
58 59 2.288729 ACGCACGTCTACGCAAGATATA 59.711 45.455 1.74 0.00 44.43 0.86
59 60 2.903095 CGCACGTCTACGCAAGATATAG 59.097 50.000 1.74 0.00 44.43 1.31
64 65 6.183360 GCACGTCTACGCAAGATATAGATCTA 60.183 42.308 4.57 4.57 41.50 1.98
83 84 6.619023 AGATCTATTTCCTCCTCCACAAGAAT 59.381 38.462 0.00 0.00 0.00 2.40
99 101 5.046304 CACAAGAATAACTCTTCTCCTCCCA 60.046 44.000 0.00 0.00 42.84 4.37
135 138 2.683768 GTCTGTCCCATCTCCTATGGT 58.316 52.381 3.49 0.00 37.48 3.55
156 159 2.364973 TAGGCCATGGAGGTGCGA 60.365 61.111 18.40 0.00 40.61 5.10
171 177 2.840102 CGAAGGATCTCGGCCCCT 60.840 66.667 0.00 0.00 35.14 4.79
254 263 1.961277 GGCGGCGATATGTCCCTTG 60.961 63.158 12.98 0.00 0.00 3.61
422 435 6.207928 TCGTCTTCGTTTATGTGTTTACAGA 58.792 36.000 0.00 0.00 38.05 3.41
458 471 2.753452 TCTACGACTTTCTTCATCGGCT 59.247 45.455 0.00 0.00 40.16 5.52
472 486 1.552578 TCGGCTTGGTTGCTACTCTA 58.447 50.000 0.00 0.00 0.00 2.43
481 497 1.135373 GTTGCTACTCTAGTGCGCTGA 60.135 52.381 10.80 4.68 0.00 4.26
506 522 1.226717 GAGGCCTTAGCACGACGAG 60.227 63.158 6.77 0.00 42.56 4.18
547 563 2.726822 AAGGTTTGCCCGACTCCGAC 62.727 60.000 0.00 0.00 38.74 4.79
548 564 2.029964 GTTTGCCCGACTCCGACA 59.970 61.111 0.00 0.00 38.22 4.35
560 576 4.148825 CCGACAAGGGAGAGGCGG 62.149 72.222 0.00 0.00 35.97 6.13
598 621 2.161808 GCTCTAGTGCTTGTAGTCGTCA 59.838 50.000 9.52 0.00 0.00 4.35
618 641 2.956333 CACTAGGTGGTCGATGGACATA 59.044 50.000 10.22 0.00 45.28 2.29
625 648 4.202223 GGTGGTCGATGGACATAGTTGTAT 60.202 45.833 10.22 0.00 45.28 2.29
667 690 5.627499 TCTTTGTAGTGCCATGATTGAAC 57.373 39.130 0.00 0.00 0.00 3.18
691 714 8.777865 ACATGAATAGATTGAAAGTTTCTCGA 57.222 30.769 16.33 4.00 0.00 4.04
716 739 7.894013 AAAAAGAAGAAGAACGAAAATCGAC 57.106 32.000 6.78 0.81 43.74 4.20
717 740 6.846325 AAAGAAGAAGAACGAAAATCGACT 57.154 33.333 6.78 3.04 43.74 4.18
718 741 5.830900 AGAAGAAGAACGAAAATCGACTG 57.169 39.130 6.78 0.00 43.74 3.51
719 742 5.529791 AGAAGAAGAACGAAAATCGACTGA 58.470 37.500 6.78 0.00 43.74 3.41
720 743 5.402867 AGAAGAAGAACGAAAATCGACTGAC 59.597 40.000 6.78 4.64 43.74 3.51
721 744 3.988517 AGAAGAACGAAAATCGACTGACC 59.011 43.478 6.78 0.83 43.74 4.02
722 745 2.685100 AGAACGAAAATCGACTGACCC 58.315 47.619 6.78 0.00 43.74 4.46
723 746 2.036733 AGAACGAAAATCGACTGACCCA 59.963 45.455 6.78 0.00 43.74 4.51
724 747 2.536761 ACGAAAATCGACTGACCCAA 57.463 45.000 6.78 0.00 43.74 4.12
725 748 2.841215 ACGAAAATCGACTGACCCAAA 58.159 42.857 6.78 0.00 43.74 3.28
726 749 3.408634 ACGAAAATCGACTGACCCAAAT 58.591 40.909 6.78 0.00 43.74 2.32
727 750 3.818773 ACGAAAATCGACTGACCCAAATT 59.181 39.130 6.78 0.00 43.74 1.82
728 751 4.083484 ACGAAAATCGACTGACCCAAATTC 60.083 41.667 6.78 0.00 43.74 2.17
729 752 4.154195 CGAAAATCGACTGACCCAAATTCT 59.846 41.667 0.00 0.00 43.74 2.40
730 753 5.350365 CGAAAATCGACTGACCCAAATTCTA 59.650 40.000 0.00 0.00 43.74 2.10
731 754 6.037172 CGAAAATCGACTGACCCAAATTCTAT 59.963 38.462 0.00 0.00 43.74 1.98
732 755 7.414098 CGAAAATCGACTGACCCAAATTCTATT 60.414 37.037 0.00 0.00 43.74 1.73
733 756 7.703058 AAATCGACTGACCCAAATTCTATTT 57.297 32.000 0.00 0.00 0.00 1.40
734 757 7.703058 AATCGACTGACCCAAATTCTATTTT 57.297 32.000 0.00 0.00 0.00 1.82
735 758 6.737254 TCGACTGACCCAAATTCTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
736 759 6.234920 TCGACTGACCCAAATTCTATTTTCA 58.765 36.000 0.00 0.00 0.00 2.69
737 760 6.371548 TCGACTGACCCAAATTCTATTTTCAG 59.628 38.462 9.25 9.25 0.00 3.02
738 761 6.403636 CGACTGACCCAAATTCTATTTTCAGG 60.404 42.308 12.99 5.01 0.00 3.86
739 762 5.185828 ACTGACCCAAATTCTATTTTCAGGC 59.814 40.000 12.99 0.00 0.00 4.85
740 763 4.157656 TGACCCAAATTCTATTTTCAGGCG 59.842 41.667 0.00 0.00 0.00 5.52
741 764 4.340617 ACCCAAATTCTATTTTCAGGCGA 58.659 39.130 0.00 0.00 0.00 5.54
742 765 4.157840 ACCCAAATTCTATTTTCAGGCGAC 59.842 41.667 0.00 0.00 0.00 5.19
743 766 4.399303 CCCAAATTCTATTTTCAGGCGACT 59.601 41.667 0.00 0.00 46.44 4.18
744 767 5.105756 CCCAAATTCTATTTTCAGGCGACTT 60.106 40.000 0.00 0.00 40.21 3.01
745 768 6.094881 CCCAAATTCTATTTTCAGGCGACTTA 59.905 38.462 0.00 0.00 40.21 2.24
746 769 6.967199 CCAAATTCTATTTTCAGGCGACTTAC 59.033 38.462 0.00 0.00 40.21 2.34
747 770 7.361713 CCAAATTCTATTTTCAGGCGACTTACA 60.362 37.037 0.00 0.00 40.21 2.41
748 771 7.865706 AATTCTATTTTCAGGCGACTTACAT 57.134 32.000 0.00 0.00 40.21 2.29
749 772 6.903883 TTCTATTTTCAGGCGACTTACATC 57.096 37.500 0.00 0.00 40.21 3.06
750 773 6.222038 TCTATTTTCAGGCGACTTACATCT 57.778 37.500 0.00 0.00 40.21 2.90
751 774 7.342769 TCTATTTTCAGGCGACTTACATCTA 57.657 36.000 0.00 0.00 40.21 1.98
752 775 7.426410 TCTATTTTCAGGCGACTTACATCTAG 58.574 38.462 0.00 0.00 40.21 2.43
753 776 5.401531 TTTTCAGGCGACTTACATCTAGT 57.598 39.130 0.00 0.00 40.21 2.57
754 777 5.401531 TTTCAGGCGACTTACATCTAGTT 57.598 39.130 0.00 0.00 40.21 2.24
755 778 4.371855 TCAGGCGACTTACATCTAGTTG 57.628 45.455 0.00 0.00 40.21 3.16
756 779 3.762288 TCAGGCGACTTACATCTAGTTGT 59.238 43.478 11.11 11.11 40.21 3.32
757 780 4.219944 TCAGGCGACTTACATCTAGTTGTT 59.780 41.667 11.57 0.00 40.21 2.83
758 781 4.327357 CAGGCGACTTACATCTAGTTGTTG 59.673 45.833 11.57 8.05 40.21 3.33
759 782 4.021368 AGGCGACTTACATCTAGTTGTTGT 60.021 41.667 11.57 10.78 37.44 3.32
760 783 4.091509 GGCGACTTACATCTAGTTGTTGTG 59.908 45.833 11.57 5.63 31.70 3.33
761 784 4.684703 GCGACTTACATCTAGTTGTTGTGT 59.315 41.667 11.57 8.34 31.70 3.72
762 785 5.176958 GCGACTTACATCTAGTTGTTGTGTT 59.823 40.000 11.57 0.00 31.70 3.32
763 786 6.292703 GCGACTTACATCTAGTTGTTGTGTTT 60.293 38.462 11.57 0.00 31.70 2.83
764 787 7.095940 GCGACTTACATCTAGTTGTTGTGTTTA 60.096 37.037 11.57 0.00 31.70 2.01
765 788 8.922676 CGACTTACATCTAGTTGTTGTGTTTAT 58.077 33.333 11.57 0.00 31.70 1.40
802 825 9.232473 AGATATCCTACCAAAAGAAAACAAGAC 57.768 33.333 0.00 0.00 0.00 3.01
806 829 6.096282 TCCTACCAAAAGAAAACAAGACCAAG 59.904 38.462 0.00 0.00 0.00 3.61
814 837 1.680338 AACAAGACCAAGGCACACTC 58.320 50.000 0.00 0.00 0.00 3.51
815 838 0.546122 ACAAGACCAAGGCACACTCA 59.454 50.000 0.00 0.00 0.00 3.41
816 839 1.064758 ACAAGACCAAGGCACACTCAA 60.065 47.619 0.00 0.00 0.00 3.02
819 842 2.024414 AGACCAAGGCACACTCAAAAC 58.976 47.619 0.00 0.00 0.00 2.43
821 844 2.362077 GACCAAGGCACACTCAAAACAT 59.638 45.455 0.00 0.00 0.00 2.71
822 845 2.362077 ACCAAGGCACACTCAAAACATC 59.638 45.455 0.00 0.00 0.00 3.06
823 846 2.605338 CCAAGGCACACTCAAAACATCG 60.605 50.000 0.00 0.00 0.00 3.84
870 895 0.898326 GGGGCCCAAACGTTCAATCT 60.898 55.000 26.86 0.00 0.00 2.40
1083 1128 0.037139 ATGCCGTGCAAGGTAACGTA 60.037 50.000 20.23 1.05 43.62 3.57
1101 1146 4.914312 CGTACCAACGTTCATACATGTT 57.086 40.909 2.30 0.00 44.21 2.71
1104 1149 5.062934 CGTACCAACGTTCATACATGTTGAT 59.937 40.000 2.30 0.00 43.26 2.57
1122 1182 0.176680 ATCATCTCCTTTCTGCGCGT 59.823 50.000 8.43 0.00 0.00 6.01
1151 1211 2.556287 CGCTCAAGTTTGCCGGTC 59.444 61.111 1.90 0.00 0.00 4.79
1158 1218 1.535462 CAAGTTTGCCGGTCGATTTCT 59.465 47.619 1.90 0.00 0.00 2.52
1163 1223 2.459060 TGCCGGTCGATTTCTGTTTA 57.541 45.000 1.90 0.00 0.00 2.01
1320 1380 2.291043 CCGGCCACTTCCAGGTACT 61.291 63.158 2.24 0.00 43.88 2.73
1321 1381 1.218316 CGGCCACTTCCAGGTACTC 59.782 63.158 2.24 0.00 34.60 2.59
1322 1382 1.218316 GGCCACTTCCAGGTACTCG 59.782 63.158 0.00 0.00 34.60 4.18
1324 1384 1.972198 CCACTTCCAGGTACTCGCA 59.028 57.895 0.00 0.00 34.60 5.10
1339 1409 2.594592 GCACCACACCCACAGTCC 60.595 66.667 0.00 0.00 0.00 3.85
1345 1415 1.272092 CCACACCCACAGTCCATCAAT 60.272 52.381 0.00 0.00 0.00 2.57
1363 1433 5.794687 TCAATGGAAGCTTGTATTACACG 57.205 39.130 2.10 0.00 0.00 4.49
1364 1434 4.634004 TCAATGGAAGCTTGTATTACACGG 59.366 41.667 2.10 0.00 0.00 4.94
1383 1457 0.377554 GTGATGATCTGTGCTGCAGC 59.622 55.000 31.89 31.89 44.66 5.25
1402 1476 0.578683 CACGGATGATGACGATGTGC 59.421 55.000 0.00 0.00 0.00 4.57
1404 1478 0.857287 CGGATGATGACGATGTGCTG 59.143 55.000 0.00 0.00 0.00 4.41
1405 1479 0.585357 GGATGATGACGATGTGCTGC 59.415 55.000 0.00 0.00 0.00 5.25
1410 1484 3.114616 GACGATGTGCTGCTGCGT 61.115 61.111 11.21 5.32 43.34 5.24
1411 1485 2.666190 ACGATGTGCTGCTGCGTT 60.666 55.556 11.21 0.00 43.34 4.84
1412 1486 2.175184 GACGATGTGCTGCTGCGTTT 62.175 55.000 11.21 0.00 43.34 3.60
1413 1487 1.794785 CGATGTGCTGCTGCGTTTG 60.795 57.895 11.21 0.00 43.34 2.93
1414 1488 1.283793 GATGTGCTGCTGCGTTTGT 59.716 52.632 11.21 0.00 43.34 2.83
1415 1489 1.000233 GATGTGCTGCTGCGTTTGTG 61.000 55.000 11.21 0.00 43.34 3.33
1416 1490 3.026311 GTGCTGCTGCGTTTGTGC 61.026 61.111 11.21 0.00 43.34 4.57
1417 1491 3.211245 TGCTGCTGCGTTTGTGCT 61.211 55.556 11.21 0.00 43.34 4.40
1418 1492 2.428071 GCTGCTGCGTTTGTGCTC 60.428 61.111 0.00 0.00 35.36 4.26
1419 1493 3.024784 CTGCTGCGTTTGTGCTCA 58.975 55.556 0.00 0.00 35.36 4.26
1420 1494 1.577922 CTGCTGCGTTTGTGCTCAT 59.422 52.632 0.00 0.00 35.36 2.90
1421 1495 0.039798 CTGCTGCGTTTGTGCTCATT 60.040 50.000 0.00 0.00 35.36 2.57
1422 1496 0.385029 TGCTGCGTTTGTGCTCATTT 59.615 45.000 0.00 0.00 35.36 2.32
1423 1497 1.055338 GCTGCGTTTGTGCTCATTTC 58.945 50.000 0.00 0.00 35.36 2.17
1424 1498 1.600164 GCTGCGTTTGTGCTCATTTCA 60.600 47.619 0.00 0.00 35.36 2.69
1425 1499 2.923605 GCTGCGTTTGTGCTCATTTCAT 60.924 45.455 0.00 0.00 35.36 2.57
1426 1500 3.311106 CTGCGTTTGTGCTCATTTCATT 58.689 40.909 0.00 0.00 35.36 2.57
1427 1501 3.715495 TGCGTTTGTGCTCATTTCATTT 58.285 36.364 0.00 0.00 35.36 2.32
1428 1502 3.735240 TGCGTTTGTGCTCATTTCATTTC 59.265 39.130 0.00 0.00 35.36 2.17
1429 1503 3.983344 GCGTTTGTGCTCATTTCATTTCT 59.017 39.130 0.00 0.00 0.00 2.52
1430 1504 4.143473 GCGTTTGTGCTCATTTCATTTCTG 60.143 41.667 0.00 0.00 0.00 3.02
1431 1505 4.383649 CGTTTGTGCTCATTTCATTTCTGG 59.616 41.667 0.00 0.00 0.00 3.86
1432 1506 5.291971 GTTTGTGCTCATTTCATTTCTGGT 58.708 37.500 0.00 0.00 0.00 4.00
1433 1507 4.508461 TGTGCTCATTTCATTTCTGGTG 57.492 40.909 0.00 0.00 0.00 4.17
1434 1508 4.143543 TGTGCTCATTTCATTTCTGGTGA 58.856 39.130 0.00 0.00 0.00 4.02
1435 1509 4.768448 TGTGCTCATTTCATTTCTGGTGAT 59.232 37.500 0.00 0.00 0.00 3.06
1436 1510 5.945191 TGTGCTCATTTCATTTCTGGTGATA 59.055 36.000 0.00 0.00 0.00 2.15
1497 1571 4.021925 GAGGGACGCCAAGCTGGT 62.022 66.667 0.00 0.00 40.46 4.00
1558 1632 4.819761 GTGCTCATCGAGGCCGCA 62.820 66.667 7.44 9.27 35.37 5.69
1624 1698 1.130678 GGTCCCTCCATGGATCCTCC 61.131 65.000 16.63 12.10 36.63 4.30
1681 1755 2.113243 AACCGCTCAGGAAGGTGACC 62.113 60.000 0.00 0.00 45.00 4.02
1687 1761 0.191064 TCAGGAAGGTGACCACTCCT 59.809 55.000 16.99 16.99 38.24 3.69
1691 1765 1.056660 GAAGGTGACCACTCCTGGAA 58.943 55.000 3.63 0.00 40.55 3.53
1931 2005 1.072159 GTGAGCACCAGGAGCAAGT 59.928 57.895 11.90 0.00 0.00 3.16
1936 2010 1.597854 CACCAGGAGCAAGTCGCAA 60.598 57.895 0.00 0.00 46.13 4.85
1942 2016 2.280119 AGCAAGTCGCAACTCGCA 60.280 55.556 0.00 0.00 46.13 5.10
2042 2474 9.277783 TCTAACTAATAGTAGTACGGATCCAAC 57.722 37.037 13.41 9.35 39.79 3.77
2057 2489 0.588252 CCAACTGGTGAACTGAAGCG 59.412 55.000 0.00 0.00 0.00 4.68
2069 2501 2.017049 ACTGAAGCGCTTGTTCTTGTT 58.983 42.857 30.47 0.00 0.00 2.83
2071 2503 1.123655 GAAGCGCTTGTTCTTGTTGC 58.876 50.000 30.47 4.72 0.00 4.17
2177 2609 4.323028 CCTCACATCTCCTGAAAAGCACTA 60.323 45.833 0.00 0.00 0.00 2.74
2224 2656 4.766891 AGATCAATCAAACACGTGGGAATT 59.233 37.500 21.57 10.73 0.00 2.17
2231 2663 3.708563 AACACGTGGGAATTTTCACTG 57.291 42.857 21.57 8.89 0.00 3.66
2235 2667 3.081804 ACGTGGGAATTTTCACTGATCC 58.918 45.455 0.00 0.00 0.00 3.36
2255 2687 1.836166 CTGTGGTGTGGGAGATGAGAT 59.164 52.381 0.00 0.00 0.00 2.75
2269 2701 5.538053 GGAGATGAGATGAATCCTCACTGTA 59.462 44.000 0.00 0.00 42.68 2.74
2326 2782 1.111116 ACTTGGAACGGACGAGGACA 61.111 55.000 0.00 0.00 0.00 4.02
2368 2824 2.588877 GGGCCGACATCGACATGG 60.589 66.667 2.09 0.00 43.02 3.66
2370 2826 1.592669 GGCCGACATCGACATGGAG 60.593 63.158 2.09 0.00 43.02 3.86
2440 2896 1.298190 GTCGTCGGTGATACCTCGC 60.298 63.158 0.00 0.00 35.66 5.03
2494 2950 4.916183 AGGGAAGGAGTGAAGATTGAAAG 58.084 43.478 0.00 0.00 0.00 2.62
2495 2951 4.599241 AGGGAAGGAGTGAAGATTGAAAGA 59.401 41.667 0.00 0.00 0.00 2.52
2541 3018 4.879104 CGAGAAACGTCTACTAGACCAT 57.121 45.455 10.14 0.00 42.12 3.55
2542 3019 5.980698 CGAGAAACGTCTACTAGACCATA 57.019 43.478 10.14 0.00 42.12 2.74
2543 3020 5.736338 CGAGAAACGTCTACTAGACCATAC 58.264 45.833 10.14 1.72 42.12 2.39
2588 3070 7.710044 ACATTGTGTCATCAAATTGTAAAAGCA 59.290 29.630 0.00 0.00 0.00 3.91
2592 3074 7.547019 TGTGTCATCAAATTGTAAAAGCACAAA 59.453 29.630 0.00 0.00 41.50 2.83
2593 3075 7.845622 GTGTCATCAAATTGTAAAAGCACAAAC 59.154 33.333 0.00 0.00 41.50 2.93
2594 3076 7.010923 TGTCATCAAATTGTAAAAGCACAAACC 59.989 33.333 0.00 0.00 41.50 3.27
2608 3110 9.606631 AAAAGCACAAACCAAAATAATTCTACA 57.393 25.926 0.00 0.00 0.00 2.74
2609 3111 9.606631 AAAGCACAAACCAAAATAATTCTACAA 57.393 25.926 0.00 0.00 0.00 2.41
2649 3164 4.909305 TGAAATTTTCGCGTCAACATCTTC 59.091 37.500 5.77 1.34 0.00 2.87
2658 3173 1.069227 GTCAACATCTTCCGTTGGCAC 60.069 52.381 2.95 0.00 45.95 5.01
2761 3300 5.185454 ACTTAACATGCATTCTTCGATCCA 58.815 37.500 0.00 0.00 0.00 3.41
2767 3306 1.062587 GCATTCTTCGATCCAACGGTG 59.937 52.381 0.00 0.00 0.00 4.94
2785 3324 3.062099 CGGTGGAAATGTCGTAACATGAG 59.938 47.826 0.00 0.00 45.48 2.90
2811 3350 6.779860 ACTCATAGTGTGATTAAGGTTGGTT 58.220 36.000 0.00 0.00 35.97 3.67
2812 3351 6.655003 ACTCATAGTGTGATTAAGGTTGGTTG 59.345 38.462 0.00 0.00 35.97 3.77
2813 3352 6.539173 TCATAGTGTGATTAAGGTTGGTTGT 58.461 36.000 0.00 0.00 0.00 3.32
2814 3353 6.653320 TCATAGTGTGATTAAGGTTGGTTGTC 59.347 38.462 0.00 0.00 0.00 3.18
2815 3354 4.142038 AGTGTGATTAAGGTTGGTTGTCC 58.858 43.478 0.00 0.00 0.00 4.02
2816 3355 3.886505 GTGTGATTAAGGTTGGTTGTCCA 59.113 43.478 0.00 0.00 42.66 4.02
2817 3356 3.886505 TGTGATTAAGGTTGGTTGTCCAC 59.113 43.478 0.00 0.00 44.22 4.02
2901 3440 7.277981 AGGTAAGATTACGCAACTTTACATCAG 59.722 37.037 6.32 0.00 34.50 2.90
2931 3470 9.491675 CTTGCTCATCTAATCATCTTATTCACT 57.508 33.333 0.00 0.00 0.00 3.41
3089 3628 7.890127 TCAGTCATGTTAATTCTTCCAAAGGAT 59.110 33.333 0.00 0.00 0.00 3.24
3091 3630 7.890127 AGTCATGTTAATTCTTCCAAAGGATCA 59.110 33.333 0.00 0.00 0.00 2.92
3092 3631 7.970614 GTCATGTTAATTCTTCCAAAGGATCAC 59.029 37.037 0.00 0.00 0.00 3.06
3094 3633 7.831691 TGTTAATTCTTCCAAAGGATCACAA 57.168 32.000 0.00 0.00 0.00 3.33
3095 3634 7.885297 TGTTAATTCTTCCAAAGGATCACAAG 58.115 34.615 0.00 0.00 0.00 3.16
3096 3635 7.505585 TGTTAATTCTTCCAAAGGATCACAAGT 59.494 33.333 0.00 0.00 0.00 3.16
3099 3638 4.792068 TCTTCCAAAGGATCACAAGTGTT 58.208 39.130 0.00 0.00 0.00 3.32
3100 3639 5.935945 TCTTCCAAAGGATCACAAGTGTTA 58.064 37.500 0.00 0.00 0.00 2.41
3101 3640 5.763204 TCTTCCAAAGGATCACAAGTGTTAC 59.237 40.000 0.00 0.00 0.00 2.50
3157 3707 5.777802 ACATTTAATTTCGTGGCATGTGAA 58.222 33.333 6.60 3.86 0.00 3.18
3158 3708 5.863397 ACATTTAATTTCGTGGCATGTGAAG 59.137 36.000 6.60 0.00 0.00 3.02
3166 3716 2.349817 CGTGGCATGTGAAGAAACAGAC 60.350 50.000 0.00 0.00 32.52 3.51
3168 3718 3.316308 GTGGCATGTGAAGAAACAGACTT 59.684 43.478 0.00 0.00 32.52 3.01
3175 3725 8.289618 GCATGTGAAGAAACAGACTTGTATAAA 58.710 33.333 0.00 0.00 36.23 1.40
3176 3726 9.599322 CATGTGAAGAAACAGACTTGTATAAAC 57.401 33.333 0.00 0.00 36.23 2.01
3177 3727 8.725405 TGTGAAGAAACAGACTTGTATAAACA 57.275 30.769 0.00 0.00 36.23 2.83
3211 3767 6.139679 TGATCCTTCTCAACTTTATTGGGT 57.860 37.500 0.00 0.00 0.00 4.51
3220 3776 0.679640 CTTTATTGGGTGCCCGCTGA 60.680 55.000 2.44 0.00 39.42 4.26
3231 3787 3.818787 CCGCTGACAGCAATGGGC 61.819 66.667 26.32 0.00 42.58 5.36
3249 3806 0.107643 GCTTGGGAGGTCCTATGCTC 59.892 60.000 11.63 0.00 42.03 4.26
3320 3877 3.745975 AGTGTATTTGACATGTGTCCGTG 59.254 43.478 1.15 0.00 44.15 4.94
3341 3898 3.181428 TGAAGAGAGACCTGAAGGACTGA 60.181 47.826 6.06 0.00 40.17 3.41
3354 3911 6.127897 CCTGAAGGACTGAAATATCACCAAAC 60.128 42.308 0.00 0.00 37.39 2.93
3418 3975 2.149973 ATGGATTTCAACTCCAGCCC 57.850 50.000 2.52 0.00 45.64 5.19
3425 3982 3.260100 AACTCCAGCCCACCCCAG 61.260 66.667 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.407407 AGAAACGCCTGAAAGAGAGATAA 57.593 39.130 0.00 0.00 34.07 1.75
1 2 5.407407 AAGAAACGCCTGAAAGAGAGATA 57.593 39.130 0.00 0.00 34.07 1.98
5 6 2.368875 AGGAAGAAACGCCTGAAAGAGA 59.631 45.455 0.00 0.00 34.07 3.10
6 7 2.739379 GAGGAAGAAACGCCTGAAAGAG 59.261 50.000 0.00 0.00 34.07 2.85
7 8 2.104111 TGAGGAAGAAACGCCTGAAAGA 59.896 45.455 0.00 0.00 34.07 2.52
8 9 2.494059 TGAGGAAGAAACGCCTGAAAG 58.506 47.619 0.00 0.00 33.84 2.62
9 10 2.631160 TGAGGAAGAAACGCCTGAAA 57.369 45.000 0.00 0.00 33.84 2.69
11 12 2.631160 TTTGAGGAAGAAACGCCTGA 57.369 45.000 0.00 0.00 33.84 3.86
12 13 3.708563 TTTTTGAGGAAGAAACGCCTG 57.291 42.857 0.00 0.00 33.84 4.85
13 14 6.590234 AATATTTTTGAGGAAGAAACGCCT 57.410 33.333 0.00 0.00 37.18 5.52
14 15 6.468000 CGTAATATTTTTGAGGAAGAAACGCC 59.532 38.462 0.00 0.00 0.00 5.68
15 16 6.021704 GCGTAATATTTTTGAGGAAGAAACGC 60.022 38.462 7.51 7.51 0.00 4.84
16 17 7.007099 GTGCGTAATATTTTTGAGGAAGAAACG 59.993 37.037 0.00 0.00 0.00 3.60
17 18 7.007099 CGTGCGTAATATTTTTGAGGAAGAAAC 59.993 37.037 0.00 0.00 0.00 2.78
18 19 7.018826 CGTGCGTAATATTTTTGAGGAAGAAA 58.981 34.615 0.00 0.00 0.00 2.52
19 20 6.148150 ACGTGCGTAATATTTTTGAGGAAGAA 59.852 34.615 0.00 0.00 0.00 2.52
20 21 5.640357 ACGTGCGTAATATTTTTGAGGAAGA 59.360 36.000 0.00 0.00 0.00 2.87
21 22 5.864986 ACGTGCGTAATATTTTTGAGGAAG 58.135 37.500 0.00 0.00 0.00 3.46
22 23 5.640357 AGACGTGCGTAATATTTTTGAGGAA 59.360 36.000 0.00 0.00 0.00 3.36
23 24 5.172934 AGACGTGCGTAATATTTTTGAGGA 58.827 37.500 0.00 0.00 0.00 3.71
24 25 5.464965 AGACGTGCGTAATATTTTTGAGG 57.535 39.130 0.00 0.00 0.00 3.86
25 26 6.111696 CGTAGACGTGCGTAATATTTTTGAG 58.888 40.000 0.00 0.00 34.11 3.02
26 27 5.499017 GCGTAGACGTGCGTAATATTTTTGA 60.499 40.000 0.00 0.00 42.22 2.69
27 28 4.658723 GCGTAGACGTGCGTAATATTTTTG 59.341 41.667 0.00 0.00 42.22 2.44
28 29 4.326817 TGCGTAGACGTGCGTAATATTTTT 59.673 37.500 0.00 0.00 42.22 1.94
29 30 3.858812 TGCGTAGACGTGCGTAATATTTT 59.141 39.130 0.00 0.00 42.22 1.82
30 31 3.437428 TGCGTAGACGTGCGTAATATTT 58.563 40.909 0.00 0.00 42.22 1.40
31 32 3.069074 TGCGTAGACGTGCGTAATATT 57.931 42.857 0.00 0.00 42.22 1.28
32 33 2.761392 TGCGTAGACGTGCGTAATAT 57.239 45.000 0.00 0.00 42.22 1.28
33 34 2.095692 TCTTGCGTAGACGTGCGTAATA 59.904 45.455 0.00 0.00 42.22 0.98
34 35 1.135603 TCTTGCGTAGACGTGCGTAAT 60.136 47.619 0.00 0.00 42.22 1.89
35 36 0.238025 TCTTGCGTAGACGTGCGTAA 59.762 50.000 0.00 0.00 42.22 3.18
36 37 0.448990 ATCTTGCGTAGACGTGCGTA 59.551 50.000 0.00 0.00 42.22 4.42
37 38 0.448990 TATCTTGCGTAGACGTGCGT 59.551 50.000 0.00 0.00 42.22 5.24
38 39 1.755161 ATATCTTGCGTAGACGTGCG 58.245 50.000 0.00 0.00 42.22 5.34
39 40 4.143194 TCTATATCTTGCGTAGACGTGC 57.857 45.455 0.00 0.00 42.22 5.34
40 41 6.171932 AGATCTATATCTTGCGTAGACGTG 57.828 41.667 0.00 0.00 39.55 4.49
41 42 8.495361 AATAGATCTATATCTTGCGTAGACGT 57.505 34.615 15.64 0.00 39.55 4.34
42 43 9.428363 GAAATAGATCTATATCTTGCGTAGACG 57.572 37.037 15.64 0.00 39.55 4.18
43 44 9.724839 GGAAATAGATCTATATCTTGCGTAGAC 57.275 37.037 15.64 0.00 39.55 2.59
44 45 9.688091 AGGAAATAGATCTATATCTTGCGTAGA 57.312 33.333 15.64 0.00 39.55 2.59
45 46 9.944663 GAGGAAATAGATCTATATCTTGCGTAG 57.055 37.037 15.64 0.00 39.55 3.51
46 47 8.904834 GGAGGAAATAGATCTATATCTTGCGTA 58.095 37.037 15.64 0.00 39.55 4.42
47 48 7.617723 AGGAGGAAATAGATCTATATCTTGCGT 59.382 37.037 15.64 1.51 39.55 5.24
48 49 8.006298 AGGAGGAAATAGATCTATATCTTGCG 57.994 38.462 15.64 0.00 39.55 4.85
49 50 8.421002 GGAGGAGGAAATAGATCTATATCTTGC 58.579 40.741 15.64 11.45 39.55 4.01
50 51 9.486123 TGGAGGAGGAAATAGATCTATATCTTG 57.514 37.037 15.64 0.00 39.55 3.02
51 52 9.487442 GTGGAGGAGGAAATAGATCTATATCTT 57.513 37.037 15.64 6.75 39.55 2.40
52 53 8.628281 TGTGGAGGAGGAAATAGATCTATATCT 58.372 37.037 15.64 12.52 44.80 1.98
53 54 8.830915 TGTGGAGGAGGAAATAGATCTATATC 57.169 38.462 15.64 10.97 0.00 1.63
54 55 9.265862 CTTGTGGAGGAGGAAATAGATCTATAT 57.734 37.037 15.64 3.97 0.00 0.86
55 56 8.456940 TCTTGTGGAGGAGGAAATAGATCTATA 58.543 37.037 15.64 0.00 0.00 1.31
56 57 7.309091 TCTTGTGGAGGAGGAAATAGATCTAT 58.691 38.462 9.57 9.57 0.00 1.98
57 58 6.683537 TCTTGTGGAGGAGGAAATAGATCTA 58.316 40.000 4.57 4.57 0.00 1.98
58 59 5.533112 TCTTGTGGAGGAGGAAATAGATCT 58.467 41.667 0.00 0.00 0.00 2.75
59 60 5.878406 TCTTGTGGAGGAGGAAATAGATC 57.122 43.478 0.00 0.00 0.00 2.75
64 65 6.216456 AGAGTTATTCTTGTGGAGGAGGAAAT 59.784 38.462 0.00 0.00 29.61 2.17
83 84 2.667470 CCGATGGGAGGAGAAGAGTTA 58.333 52.381 0.00 0.00 34.06 2.24
135 138 1.050988 GCACCTCCATGGCCTAGAGA 61.051 60.000 6.96 2.64 40.22 3.10
156 159 2.840102 CGAGGGGCCGAGATCCTT 60.840 66.667 0.00 0.00 0.00 3.36
243 252 7.257053 GGACATTATTCCTACCAAGGGACATAT 60.257 40.741 0.00 0.00 43.84 1.78
244 253 6.043938 GGACATTATTCCTACCAAGGGACATA 59.956 42.308 0.00 0.00 43.84 2.29
254 263 5.019785 AGAACGTGGACATTATTCCTACC 57.980 43.478 0.00 0.00 36.51 3.18
299 311 4.514577 CGCCCTCCGACGATGCTT 62.515 66.667 0.00 0.00 40.02 3.91
321 333 0.974383 ATCCGACGGAGACAAACCTT 59.026 50.000 22.99 0.00 34.05 3.50
392 405 2.982470 ACATAAACGAAGACGAACGGAC 59.018 45.455 0.00 0.00 42.66 4.79
458 471 1.671850 GCGCACTAGAGTAGCAACCAA 60.672 52.381 0.30 0.00 33.18 3.67
472 486 0.678395 CCTCATAGGATCAGCGCACT 59.322 55.000 11.47 1.70 37.67 4.40
481 497 1.620819 CGTGCTAAGGCCTCATAGGAT 59.379 52.381 5.23 0.00 37.67 3.24
506 522 4.863491 TGTTGTAGTAGACAGTCGGAAAC 58.137 43.478 0.00 0.00 39.88 2.78
547 563 2.266055 GTCACCGCCTCTCCCTTG 59.734 66.667 0.00 0.00 0.00 3.61
548 564 3.382832 CGTCACCGCCTCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
575 591 2.557056 ACGACTACAAGCACTAGAGCAA 59.443 45.455 14.80 0.00 36.85 3.91
598 621 2.160721 ATGTCCATCGACCACCTAGT 57.839 50.000 0.00 0.00 38.32 2.57
631 654 7.295930 GCACTACAAAGAACAACATAGGTAAC 58.704 38.462 0.00 0.00 0.00 2.50
653 676 6.381481 TCTATTCATGTTCAATCATGGCAC 57.619 37.500 0.00 0.00 43.52 5.01
705 728 2.536761 TTGGGTCAGTCGATTTTCGT 57.463 45.000 0.00 0.00 41.35 3.85
706 729 4.154195 AGAATTTGGGTCAGTCGATTTTCG 59.846 41.667 0.00 0.00 42.10 3.46
707 730 5.629079 AGAATTTGGGTCAGTCGATTTTC 57.371 39.130 0.00 0.00 0.00 2.29
708 731 7.703058 AATAGAATTTGGGTCAGTCGATTTT 57.297 32.000 0.00 0.00 0.00 1.82
709 732 7.703058 AAATAGAATTTGGGTCAGTCGATTT 57.297 32.000 0.00 0.00 0.00 2.17
710 733 7.393234 TGAAAATAGAATTTGGGTCAGTCGATT 59.607 33.333 0.00 0.00 0.00 3.34
711 734 6.884295 TGAAAATAGAATTTGGGTCAGTCGAT 59.116 34.615 0.00 0.00 0.00 3.59
712 735 6.234920 TGAAAATAGAATTTGGGTCAGTCGA 58.765 36.000 0.00 0.00 0.00 4.20
713 736 6.403636 CCTGAAAATAGAATTTGGGTCAGTCG 60.404 42.308 9.80 0.00 0.00 4.18
714 737 6.625960 GCCTGAAAATAGAATTTGGGTCAGTC 60.626 42.308 9.80 0.00 0.00 3.51
715 738 5.185828 GCCTGAAAATAGAATTTGGGTCAGT 59.814 40.000 9.80 0.00 0.00 3.41
716 739 5.654497 GCCTGAAAATAGAATTTGGGTCAG 58.346 41.667 5.93 5.93 0.00 3.51
717 740 4.157656 CGCCTGAAAATAGAATTTGGGTCA 59.842 41.667 0.00 0.00 0.00 4.02
718 741 4.398044 TCGCCTGAAAATAGAATTTGGGTC 59.602 41.667 0.00 0.00 0.00 4.46
719 742 4.157840 GTCGCCTGAAAATAGAATTTGGGT 59.842 41.667 0.00 0.00 0.00 4.51
720 743 4.399303 AGTCGCCTGAAAATAGAATTTGGG 59.601 41.667 0.00 0.00 0.00 4.12
721 744 5.567138 AGTCGCCTGAAAATAGAATTTGG 57.433 39.130 0.00 0.00 0.00 3.28
722 745 7.526608 TGTAAGTCGCCTGAAAATAGAATTTG 58.473 34.615 0.00 0.00 0.00 2.32
723 746 7.681939 TGTAAGTCGCCTGAAAATAGAATTT 57.318 32.000 0.00 0.00 0.00 1.82
724 747 7.770897 AGATGTAAGTCGCCTGAAAATAGAATT 59.229 33.333 0.00 0.00 0.00 2.17
725 748 7.275920 AGATGTAAGTCGCCTGAAAATAGAAT 58.724 34.615 0.00 0.00 0.00 2.40
726 749 6.640518 AGATGTAAGTCGCCTGAAAATAGAA 58.359 36.000 0.00 0.00 0.00 2.10
727 750 6.222038 AGATGTAAGTCGCCTGAAAATAGA 57.778 37.500 0.00 0.00 0.00 1.98
728 751 7.203910 ACTAGATGTAAGTCGCCTGAAAATAG 58.796 38.462 0.00 0.00 0.00 1.73
729 752 7.108841 ACTAGATGTAAGTCGCCTGAAAATA 57.891 36.000 0.00 0.00 0.00 1.40
730 753 5.978814 ACTAGATGTAAGTCGCCTGAAAAT 58.021 37.500 0.00 0.00 0.00 1.82
731 754 5.401531 ACTAGATGTAAGTCGCCTGAAAA 57.598 39.130 0.00 0.00 0.00 2.29
732 755 5.168569 CAACTAGATGTAAGTCGCCTGAAA 58.831 41.667 0.00 0.00 0.00 2.69
733 756 4.219944 ACAACTAGATGTAAGTCGCCTGAA 59.780 41.667 3.45 0.00 0.00 3.02
734 757 3.762288 ACAACTAGATGTAAGTCGCCTGA 59.238 43.478 3.45 0.00 0.00 3.86
735 758 4.111375 ACAACTAGATGTAAGTCGCCTG 57.889 45.455 3.45 0.00 0.00 4.85
736 759 4.021368 ACAACAACTAGATGTAAGTCGCCT 60.021 41.667 6.02 0.00 30.67 5.52
737 760 4.091509 CACAACAACTAGATGTAAGTCGCC 59.908 45.833 6.02 0.00 31.34 5.54
738 761 4.684703 ACACAACAACTAGATGTAAGTCGC 59.315 41.667 6.02 0.00 31.34 5.19
739 762 6.764877 AACACAACAACTAGATGTAAGTCG 57.235 37.500 6.02 6.39 31.34 4.18
771 794 9.668497 GTTTTCTTTTGGTAGGATATCTACTGT 57.332 33.333 2.05 0.00 45.78 3.55
772 795 9.667107 TGTTTTCTTTTGGTAGGATATCTACTG 57.333 33.333 2.05 0.00 45.78 2.74
776 799 9.232473 GTCTTGTTTTCTTTTGGTAGGATATCT 57.768 33.333 2.05 0.00 0.00 1.98
777 800 8.459635 GGTCTTGTTTTCTTTTGGTAGGATATC 58.540 37.037 0.00 0.00 0.00 1.63
778 801 7.947890 TGGTCTTGTTTTCTTTTGGTAGGATAT 59.052 33.333 0.00 0.00 0.00 1.63
779 802 7.291566 TGGTCTTGTTTTCTTTTGGTAGGATA 58.708 34.615 0.00 0.00 0.00 2.59
780 803 6.133356 TGGTCTTGTTTTCTTTTGGTAGGAT 58.867 36.000 0.00 0.00 0.00 3.24
781 804 5.511363 TGGTCTTGTTTTCTTTTGGTAGGA 58.489 37.500 0.00 0.00 0.00 2.94
782 805 5.845391 TGGTCTTGTTTTCTTTTGGTAGG 57.155 39.130 0.00 0.00 0.00 3.18
783 806 6.273071 CCTTGGTCTTGTTTTCTTTTGGTAG 58.727 40.000 0.00 0.00 0.00 3.18
784 807 5.394773 GCCTTGGTCTTGTTTTCTTTTGGTA 60.395 40.000 0.00 0.00 0.00 3.25
785 808 4.622933 GCCTTGGTCTTGTTTTCTTTTGGT 60.623 41.667 0.00 0.00 0.00 3.67
786 809 3.871006 GCCTTGGTCTTGTTTTCTTTTGG 59.129 43.478 0.00 0.00 0.00 3.28
787 810 4.329801 GTGCCTTGGTCTTGTTTTCTTTTG 59.670 41.667 0.00 0.00 0.00 2.44
788 811 4.020662 TGTGCCTTGGTCTTGTTTTCTTTT 60.021 37.500 0.00 0.00 0.00 2.27
789 812 3.513515 TGTGCCTTGGTCTTGTTTTCTTT 59.486 39.130 0.00 0.00 0.00 2.52
790 813 3.096092 TGTGCCTTGGTCTTGTTTTCTT 58.904 40.909 0.00 0.00 0.00 2.52
791 814 2.427095 GTGTGCCTTGGTCTTGTTTTCT 59.573 45.455 0.00 0.00 0.00 2.52
792 815 2.427095 AGTGTGCCTTGGTCTTGTTTTC 59.573 45.455 0.00 0.00 0.00 2.29
802 825 2.605338 CGATGTTTTGAGTGTGCCTTGG 60.605 50.000 0.00 0.00 0.00 3.61
806 829 1.197721 CTCCGATGTTTTGAGTGTGCC 59.802 52.381 0.00 0.00 0.00 5.01
814 837 1.790755 TCACCGTCTCCGATGTTTTG 58.209 50.000 0.00 0.00 35.63 2.44
815 838 2.536761 TTCACCGTCTCCGATGTTTT 57.463 45.000 0.00 0.00 35.63 2.43
816 839 2.036733 TCTTTCACCGTCTCCGATGTTT 59.963 45.455 0.00 0.00 35.63 2.83
819 842 2.363788 TTCTTTCACCGTCTCCGATG 57.636 50.000 0.00 0.00 35.63 3.84
821 844 2.867975 GTTTTTCTTTCACCGTCTCCGA 59.132 45.455 0.00 0.00 35.63 4.55
822 845 2.870411 AGTTTTTCTTTCACCGTCTCCG 59.130 45.455 0.00 0.00 0.00 4.63
823 846 3.875134 TCAGTTTTTCTTTCACCGTCTCC 59.125 43.478 0.00 0.00 0.00 3.71
860 885 5.452077 GCAATAGGGACTCTAGATTGAACGT 60.452 44.000 2.51 0.00 41.75 3.99
866 891 3.243907 GCGTGCAATAGGGACTCTAGATT 60.244 47.826 0.00 0.00 41.75 2.40
870 895 0.750850 GGCGTGCAATAGGGACTCTA 59.249 55.000 0.00 0.00 41.75 2.43
897 922 1.316706 GGTAGGTGAGAGAGCGTGCT 61.317 60.000 0.00 0.00 0.00 4.40
987 1032 4.221422 GCCATCTCCCGCGTGCTA 62.221 66.667 4.92 0.00 0.00 3.49
1083 1128 5.000591 TGATCAACATGTATGAACGTTGGT 58.999 37.500 5.00 0.00 39.33 3.67
1085 1130 7.008440 AGATGATCAACATGTATGAACGTTG 57.992 36.000 5.00 0.00 39.56 4.10
1086 1131 6.258727 GGAGATGATCAACATGTATGAACGTT 59.741 38.462 0.00 0.00 39.56 3.99
1087 1132 5.755375 GGAGATGATCAACATGTATGAACGT 59.245 40.000 0.00 5.83 39.56 3.99
1088 1133 5.987953 AGGAGATGATCAACATGTATGAACG 59.012 40.000 0.00 0.00 39.56 3.95
1089 1134 7.798596 AAGGAGATGATCAACATGTATGAAC 57.201 36.000 0.00 5.20 39.56 3.18
1090 1135 8.270030 AGAAAGGAGATGATCAACATGTATGAA 58.730 33.333 0.00 0.00 39.56 2.57
1091 1136 7.713942 CAGAAAGGAGATGATCAACATGTATGA 59.286 37.037 0.00 5.99 39.56 2.15
1092 1137 7.520131 GCAGAAAGGAGATGATCAACATGTATG 60.520 40.741 0.00 0.00 39.56 2.39
1093 1138 6.485984 GCAGAAAGGAGATGATCAACATGTAT 59.514 38.462 0.00 0.00 39.56 2.29
1101 1146 1.803998 CGCGCAGAAAGGAGATGATCA 60.804 52.381 8.75 0.00 0.00 2.92
1104 1149 0.037326 AACGCGCAGAAAGGAGATGA 60.037 50.000 5.73 0.00 0.00 2.92
1122 1182 1.742831 ACTTGAGCGCTTGACACAAAA 59.257 42.857 13.26 0.00 0.00 2.44
1151 1211 5.335127 CCAGCCTTGAATAAACAGAAATCG 58.665 41.667 0.00 0.00 0.00 3.34
1158 1218 1.203112 TGCCCCAGCCTTGAATAAACA 60.203 47.619 0.00 0.00 38.69 2.83
1163 1223 2.361610 CGTGCCCCAGCCTTGAAT 60.362 61.111 0.00 0.00 38.69 2.57
1192 1252 2.801631 GCCGAGGATCTCCACCAGG 61.802 68.421 0.00 0.00 38.89 4.45
1320 1380 3.454587 GACTGTGGGTGTGGTGCGA 62.455 63.158 0.00 0.00 0.00 5.10
1321 1381 2.972505 GACTGTGGGTGTGGTGCG 60.973 66.667 0.00 0.00 0.00 5.34
1322 1382 2.594592 GGACTGTGGGTGTGGTGC 60.595 66.667 0.00 0.00 0.00 5.01
1324 1384 1.059584 TGATGGACTGTGGGTGTGGT 61.060 55.000 0.00 0.00 0.00 4.16
1339 1409 6.194463 CGTGTAATACAAGCTTCCATTGATG 58.806 40.000 0.00 0.00 0.00 3.07
1345 1415 3.007074 TCACCGTGTAATACAAGCTTCCA 59.993 43.478 0.00 0.00 0.00 3.53
1353 1423 5.348164 CACAGATCATCACCGTGTAATACA 58.652 41.667 0.00 0.00 0.00 2.29
1354 1424 4.209288 GCACAGATCATCACCGTGTAATAC 59.791 45.833 0.00 0.00 0.00 1.89
1355 1425 4.099419 AGCACAGATCATCACCGTGTAATA 59.901 41.667 0.00 0.00 0.00 0.98
1357 1427 2.233676 AGCACAGATCATCACCGTGTAA 59.766 45.455 0.00 0.00 0.00 2.41
1358 1428 1.824852 AGCACAGATCATCACCGTGTA 59.175 47.619 0.00 0.00 0.00 2.90
1359 1429 0.610174 AGCACAGATCATCACCGTGT 59.390 50.000 0.00 0.00 0.00 4.49
1360 1430 1.004595 CAGCACAGATCATCACCGTG 58.995 55.000 0.00 0.00 0.00 4.94
1361 1431 0.742281 GCAGCACAGATCATCACCGT 60.742 55.000 0.00 0.00 0.00 4.83
1362 1432 0.741927 TGCAGCACAGATCATCACCG 60.742 55.000 0.00 0.00 0.00 4.94
1363 1433 3.164026 TGCAGCACAGATCATCACC 57.836 52.632 0.00 0.00 0.00 4.02
1383 1457 0.578683 GCACATCGTCATCATCCGTG 59.421 55.000 0.00 0.00 0.00 4.94
1386 1460 0.585357 GCAGCACATCGTCATCATCC 59.415 55.000 0.00 0.00 0.00 3.51
1387 1461 1.260825 CAGCAGCACATCGTCATCATC 59.739 52.381 0.00 0.00 0.00 2.92
1402 1476 0.039798 AATGAGCACAAACGCAGCAG 60.040 50.000 0.00 0.00 0.00 4.24
1404 1478 1.055338 GAAATGAGCACAAACGCAGC 58.945 50.000 0.00 0.00 0.00 5.25
1405 1479 2.404265 TGAAATGAGCACAAACGCAG 57.596 45.000 0.00 0.00 0.00 5.18
1410 1484 5.068855 TCACCAGAAATGAAATGAGCACAAA 59.931 36.000 0.00 0.00 0.00 2.83
1411 1485 4.583907 TCACCAGAAATGAAATGAGCACAA 59.416 37.500 0.00 0.00 0.00 3.33
1412 1486 4.143543 TCACCAGAAATGAAATGAGCACA 58.856 39.130 0.00 0.00 0.00 4.57
1413 1487 4.771590 TCACCAGAAATGAAATGAGCAC 57.228 40.909 0.00 0.00 0.00 4.40
1414 1488 8.750515 TTATATCACCAGAAATGAAATGAGCA 57.249 30.769 0.00 0.00 0.00 4.26
1425 1499 9.607988 TCGCTTTCTTAATTATATCACCAGAAA 57.392 29.630 6.24 6.24 0.00 2.52
1426 1500 9.778741 ATCGCTTTCTTAATTATATCACCAGAA 57.221 29.630 0.00 0.00 0.00 3.02
1427 1501 9.208022 CATCGCTTTCTTAATTATATCACCAGA 57.792 33.333 0.00 0.00 0.00 3.86
1428 1502 8.446273 CCATCGCTTTCTTAATTATATCACCAG 58.554 37.037 0.00 0.00 0.00 4.00
1429 1503 7.936847 ACCATCGCTTTCTTAATTATATCACCA 59.063 33.333 0.00 0.00 0.00 4.17
1430 1504 8.230486 CACCATCGCTTTCTTAATTATATCACC 58.770 37.037 0.00 0.00 0.00 4.02
1431 1505 7.746475 GCACCATCGCTTTCTTAATTATATCAC 59.254 37.037 0.00 0.00 0.00 3.06
1432 1506 7.661437 AGCACCATCGCTTTCTTAATTATATCA 59.339 33.333 0.00 0.00 39.99 2.15
1433 1507 7.959651 CAGCACCATCGCTTTCTTAATTATATC 59.040 37.037 0.00 0.00 41.38 1.63
1434 1508 7.573843 GCAGCACCATCGCTTTCTTAATTATAT 60.574 37.037 0.00 0.00 41.38 0.86
1435 1509 6.293407 GCAGCACCATCGCTTTCTTAATTATA 60.293 38.462 0.00 0.00 41.38 0.98
1436 1510 5.506317 GCAGCACCATCGCTTTCTTAATTAT 60.506 40.000 0.00 0.00 41.38 1.28
1441 1515 1.086696 GCAGCACCATCGCTTTCTTA 58.913 50.000 0.00 0.00 41.38 2.10
1600 1674 0.471971 ATCCATGGAGGGACCGGTAG 60.472 60.000 21.33 0.00 40.44 3.18
1624 1698 3.827898 GCGACGTCCTCCTCCAGG 61.828 72.222 10.58 0.00 45.15 4.45
1681 1755 2.417719 CTCGGTTCTTTTCCAGGAGTG 58.582 52.381 0.00 0.00 0.00 3.51
1687 1761 2.159382 GGATTGCTCGGTTCTTTTCCA 58.841 47.619 0.00 0.00 0.00 3.53
1691 1765 2.755103 GGAATGGATTGCTCGGTTCTTT 59.245 45.455 0.00 0.00 0.00 2.52
1868 1942 0.392327 GGCTGCTTCTTCCTCCTGAC 60.392 60.000 0.00 0.00 0.00 3.51
1871 1945 2.985456 CGGCTGCTTCTTCCTCCT 59.015 61.111 0.00 0.00 0.00 3.69
2025 2290 3.949754 CACCAGTTGGATCCGTACTACTA 59.050 47.826 16.47 0.00 38.94 1.82
2027 2292 2.756760 TCACCAGTTGGATCCGTACTAC 59.243 50.000 16.47 5.99 38.94 2.73
2028 2293 3.090210 TCACCAGTTGGATCCGTACTA 57.910 47.619 16.47 1.99 38.94 1.82
2031 2296 2.028476 CAGTTCACCAGTTGGATCCGTA 60.028 50.000 7.39 0.00 38.94 4.02
2042 2474 0.236711 CAAGCGCTTCAGTTCACCAG 59.763 55.000 22.21 0.38 0.00 4.00
2057 2489 1.589779 GCAACAGCAACAAGAACAAGC 59.410 47.619 0.00 0.00 0.00 4.01
2069 2501 0.179132 CAACAACAGCAGCAACAGCA 60.179 50.000 0.00 0.00 0.00 4.41
2071 2503 1.921887 CAACAACAACAGCAGCAACAG 59.078 47.619 0.00 0.00 0.00 3.16
2177 2609 1.511305 CCGTGACGTACCTCTGCAT 59.489 57.895 3.64 0.00 0.00 3.96
2224 2656 2.487086 CCACACCACAGGATCAGTGAAA 60.487 50.000 16.47 0.00 39.30 2.69
2231 2663 1.134280 CATCTCCCACACCACAGGATC 60.134 57.143 0.00 0.00 0.00 3.36
2235 2667 1.269958 TCTCATCTCCCACACCACAG 58.730 55.000 0.00 0.00 0.00 3.66
2255 2687 4.801330 ACGAACATACAGTGAGGATTCA 57.199 40.909 0.00 0.00 0.00 2.57
2269 2701 4.695455 CCTGATAACCTGAACAACGAACAT 59.305 41.667 0.00 0.00 0.00 2.71
2326 2782 1.003355 CGATTGCCCTGGTGAGTGT 60.003 57.895 0.00 0.00 0.00 3.55
2368 2824 5.108517 CCTGTACTCTTGCTTGATCTTCTC 58.891 45.833 0.00 0.00 0.00 2.87
2370 2826 4.187694 CCCTGTACTCTTGCTTGATCTTC 58.812 47.826 0.00 0.00 0.00 2.87
2421 2877 1.011463 CGAGGTATCACCGACGACG 60.011 63.158 0.00 0.00 44.90 5.12
2440 2896 6.128282 GCCAACAAGATATCCATGTAATACCG 60.128 42.308 11.07 0.29 0.00 4.02
2508 2964 3.009301 CGTTTCTCGTCTTGTGGTAGT 57.991 47.619 0.00 0.00 34.52 2.73
2521 2977 5.587844 TGGTATGGTCTAGTAGACGTTTCTC 59.412 44.000 21.29 9.09 45.96 2.87
2533 3010 6.817765 AACAAACAACATGGTATGGTCTAG 57.182 37.500 0.00 0.00 33.60 2.43
2539 3016 5.207110 TCCCAAACAAACAACATGGTATG 57.793 39.130 0.00 0.00 0.00 2.39
2540 3017 5.129485 TGTTCCCAAACAAACAACATGGTAT 59.871 36.000 0.00 0.00 42.34 2.73
2541 3018 4.466370 TGTTCCCAAACAAACAACATGGTA 59.534 37.500 0.00 0.00 42.34 3.25
2542 3019 3.261897 TGTTCCCAAACAAACAACATGGT 59.738 39.130 0.00 0.00 42.34 3.55
2543 3020 3.866651 TGTTCCCAAACAAACAACATGG 58.133 40.909 0.00 0.00 42.34 3.66
2649 3164 2.594303 TGCTCCTTGTGCCAACGG 60.594 61.111 0.00 0.00 0.00 4.44
2662 3177 2.211806 CAAGCATAAGAGGAGCTGCTC 58.788 52.381 26.38 26.38 43.82 4.26
2663 3178 1.558756 ACAAGCATAAGAGGAGCTGCT 59.441 47.619 7.79 7.79 46.41 4.24
2664 3179 2.035530 ACAAGCATAAGAGGAGCTGC 57.964 50.000 0.00 0.00 38.86 5.25
2761 3300 2.836262 TGTTACGACATTTCCACCGTT 58.164 42.857 0.00 0.00 36.58 4.44
2767 3306 5.637810 TGAGTTCTCATGTTACGACATTTCC 59.362 40.000 0.00 0.00 43.92 3.13
2785 3324 6.879458 ACCAACCTTAATCACACTATGAGTTC 59.121 38.462 0.00 0.00 41.91 3.01
2814 3353 3.047877 GTCCTGTTTCCGCGGTGG 61.048 66.667 27.15 19.17 40.09 4.61
2815 3354 2.280524 TGTCCTGTTTCCGCGGTG 60.281 61.111 27.15 11.06 0.00 4.94
2816 3355 2.030562 CTGTCCTGTTTCCGCGGT 59.969 61.111 27.15 0.00 0.00 5.68
2817 3356 2.725203 TTCCTGTCCTGTTTCCGCGG 62.725 60.000 22.12 22.12 0.00 6.46
2820 3359 1.880027 CCTTTTCCTGTCCTGTTTCCG 59.120 52.381 0.00 0.00 0.00 4.30
2873 3412 7.355332 TGTAAAGTTGCGTAATCTTACCTTC 57.645 36.000 13.77 0.00 0.00 3.46
2901 3440 8.845413 ATAAGATGATTAGATGAGCAAGAACC 57.155 34.615 0.00 0.00 0.00 3.62
2931 3470 0.546122 AAATGAGGCTCCGGTATGCA 59.454 50.000 12.86 0.00 0.00 3.96
3089 3628 8.590719 TTATTTGACATACGTAACACTTGTGA 57.409 30.769 7.83 0.00 0.00 3.58
3099 3638 9.419297 GCATCCTCTAATTATTTGACATACGTA 57.581 33.333 0.00 0.00 0.00 3.57
3100 3639 7.931407 TGCATCCTCTAATTATTTGACATACGT 59.069 33.333 0.00 0.00 0.00 3.57
3101 3640 8.310406 TGCATCCTCTAATTATTTGACATACG 57.690 34.615 0.00 0.00 0.00 3.06
3188 3744 5.945784 CACCCAATAAAGTTGAGAAGGATCA 59.054 40.000 0.00 0.00 0.00 2.92
3211 3767 3.057548 CATTGCTGTCAGCGGGCA 61.058 61.111 19.68 4.45 46.26 5.36
3231 3787 0.390860 CGAGCATAGGACCTCCCAAG 59.609 60.000 0.00 0.00 37.41 3.61
3249 3806 5.107683 GCAAATGCTCTTCTAGTATACTGCG 60.108 44.000 15.90 6.65 33.03 5.18
3320 3877 3.426615 TCAGTCCTTCAGGTCTCTCTTC 58.573 50.000 0.00 0.00 36.34 2.87
3341 3898 7.178274 TCCATTGCTAGTTGTTTGGTGATATTT 59.822 33.333 0.00 0.00 0.00 1.40
3354 3911 1.004745 ACCCCTGTCCATTGCTAGTTG 59.995 52.381 0.00 0.00 0.00 3.16
3425 3982 1.534163 GCCTTTCAGTCCCAAACGTAC 59.466 52.381 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.