Multiple sequence alignment - TraesCS4B01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G279700 chr4B 100.000 3128 0 0 1 3128 562702497 562699370 0.000000e+00 5777
1 TraesCS4B01G279700 chr4D 94.937 1837 61 12 650 2473 449975371 449973554 0.000000e+00 2848
2 TraesCS4B01G279700 chr4D 94.163 651 37 1 34 683 449976014 449975364 0.000000e+00 990
3 TraesCS4B01G279700 chr4D 94.902 510 16 5 2473 2976 449972843 449972338 0.000000e+00 789
4 TraesCS4B01G279700 chr4A 93.116 1961 86 17 536 2473 16973999 16975933 0.000000e+00 2828
5 TraesCS4B01G279700 chr4A 94.656 262 13 1 2716 2976 16977674 16977935 3.760000e-109 405
6 TraesCS4B01G279700 chr4A 94.758 248 8 2 2473 2715 16977389 16977636 6.330000e-102 381
7 TraesCS4B01G279700 chr6D 77.950 1161 223 27 993 2129 8899521 8900672 0.000000e+00 695
8 TraesCS4B01G279700 chr6D 78.150 1103 213 22 1053 2134 8967649 8968744 0.000000e+00 676
9 TraesCS4B01G279700 chr6D 76.518 1120 227 24 1053 2150 25018680 25017575 2.090000e-161 579
10 TraesCS4B01G279700 chr6D 76.351 1129 231 23 1036 2137 8987282 8988401 9.730000e-160 573
11 TraesCS4B01G279700 chr6B 77.807 1122 220 20 1031 2129 52568202 52567087 0.000000e+00 665
12 TraesCS4B01G279700 chr6B 77.436 1170 227 27 993 2137 65175120 65173963 0.000000e+00 664
13 TraesCS4B01G279700 chr6B 75.605 1115 224 28 1053 2150 40658411 40657328 2.780000e-140 508
14 TraesCS4B01G279700 chr6A 77.296 1176 232 23 993 2137 35581603 35580432 0.000000e+00 660
15 TraesCS4B01G279700 chr2D 77.312 1168 221 35 994 2133 588162284 588163435 0.000000e+00 649
16 TraesCS4B01G279700 chr2B 77.042 1163 233 27 994 2133 711161420 711162571 3.400000e-179 638
17 TraesCS4B01G279700 chr2B 76.586 1119 237 20 1053 2151 709426104 709424991 2.690000e-165 592
18 TraesCS4B01G279700 chr5A 76.705 1129 233 22 1027 2134 650824601 650825720 4.460000e-168 601
19 TraesCS4B01G279700 chr7A 76.032 1114 237 21 1058 2152 162577916 162579018 4.560000e-153 551
20 TraesCS4B01G279700 chr7B 75.483 1191 251 30 991 2152 123655566 123656744 7.630000e-151 544
21 TraesCS4B01G279700 chr7D 75.782 1119 241 21 1053 2152 161390717 161391824 3.550000e-149 538


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G279700 chr4B 562699370 562702497 3127 True 5777.000000 5777 100.000000 1 3128 1 chr4B.!!$R1 3127
1 TraesCS4B01G279700 chr4D 449972338 449976014 3676 True 1542.333333 2848 94.667333 34 2976 3 chr4D.!!$R1 2942
2 TraesCS4B01G279700 chr4A 16973999 16977935 3936 False 1204.666667 2828 94.176667 536 2976 3 chr4A.!!$F1 2440
3 TraesCS4B01G279700 chr6D 8899521 8900672 1151 False 695.000000 695 77.950000 993 2129 1 chr6D.!!$F1 1136
4 TraesCS4B01G279700 chr6D 8967649 8968744 1095 False 676.000000 676 78.150000 1053 2134 1 chr6D.!!$F2 1081
5 TraesCS4B01G279700 chr6D 25017575 25018680 1105 True 579.000000 579 76.518000 1053 2150 1 chr6D.!!$R1 1097
6 TraesCS4B01G279700 chr6D 8987282 8988401 1119 False 573.000000 573 76.351000 1036 2137 1 chr6D.!!$F3 1101
7 TraesCS4B01G279700 chr6B 52567087 52568202 1115 True 665.000000 665 77.807000 1031 2129 1 chr6B.!!$R2 1098
8 TraesCS4B01G279700 chr6B 65173963 65175120 1157 True 664.000000 664 77.436000 993 2137 1 chr6B.!!$R3 1144
9 TraesCS4B01G279700 chr6B 40657328 40658411 1083 True 508.000000 508 75.605000 1053 2150 1 chr6B.!!$R1 1097
10 TraesCS4B01G279700 chr6A 35580432 35581603 1171 True 660.000000 660 77.296000 993 2137 1 chr6A.!!$R1 1144
11 TraesCS4B01G279700 chr2D 588162284 588163435 1151 False 649.000000 649 77.312000 994 2133 1 chr2D.!!$F1 1139
12 TraesCS4B01G279700 chr2B 711161420 711162571 1151 False 638.000000 638 77.042000 994 2133 1 chr2B.!!$F1 1139
13 TraesCS4B01G279700 chr2B 709424991 709426104 1113 True 592.000000 592 76.586000 1053 2151 1 chr2B.!!$R1 1098
14 TraesCS4B01G279700 chr5A 650824601 650825720 1119 False 601.000000 601 76.705000 1027 2134 1 chr5A.!!$F1 1107
15 TraesCS4B01G279700 chr7A 162577916 162579018 1102 False 551.000000 551 76.032000 1058 2152 1 chr7A.!!$F1 1094
16 TraesCS4B01G279700 chr7B 123655566 123656744 1178 False 544.000000 544 75.483000 991 2152 1 chr7B.!!$F1 1161
17 TraesCS4B01G279700 chr7D 161390717 161391824 1107 False 538.000000 538 75.782000 1053 2152 1 chr7D.!!$F1 1099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.179097 GAGGAGACTGGCGATGGTTC 60.179 60.0 0.00 0.00 44.43 3.62 F
344 345 0.535102 AGGCAAGAACCTCGGTTGTG 60.535 55.0 5.98 5.53 38.60 3.33 F
709 740 0.539518 GCTCTCTCTTCCCCCAGAAC 59.460 60.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1345 1.178276 CGCAGAGTAACCTGAGGTCT 58.822 55.000 3.76 0.0 33.12 3.85 R
1919 2004 2.241685 ACGTAGTACCTGGGTCTGATCT 59.758 50.000 0.00 0.0 41.94 2.75 R
2635 4236 2.038164 TGTTGCATTGCTGGGCATAAAA 59.962 40.909 10.49 0.0 40.17 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.142045 GGGGTTCCCTTACCGTCT 57.858 61.111 7.87 0.00 41.34 4.18
22 23 2.380365 GGGGTTCCCTTACCGTCTT 58.620 57.895 7.87 0.00 41.34 3.01
23 24 0.694771 GGGGTTCCCTTACCGTCTTT 59.305 55.000 7.87 0.00 41.34 2.52
24 25 1.339438 GGGGTTCCCTTACCGTCTTTC 60.339 57.143 7.87 0.00 41.34 2.62
25 26 1.627329 GGGTTCCCTTACCGTCTTTCT 59.373 52.381 0.00 0.00 39.18 2.52
26 27 2.833943 GGGTTCCCTTACCGTCTTTCTA 59.166 50.000 0.00 0.00 39.18 2.10
27 28 3.453717 GGGTTCCCTTACCGTCTTTCTAT 59.546 47.826 0.00 0.00 39.18 1.98
28 29 4.651045 GGGTTCCCTTACCGTCTTTCTATA 59.349 45.833 0.00 0.00 39.18 1.31
29 30 5.129320 GGGTTCCCTTACCGTCTTTCTATAA 59.871 44.000 0.00 0.00 39.18 0.98
30 31 6.352137 GGGTTCCCTTACCGTCTTTCTATAAA 60.352 42.308 0.00 0.00 39.18 1.40
31 32 7.105588 GGTTCCCTTACCGTCTTTCTATAAAA 58.894 38.462 0.00 0.00 0.00 1.52
32 33 7.607607 GGTTCCCTTACCGTCTTTCTATAAAAA 59.392 37.037 0.00 0.00 0.00 1.94
68 69 0.179097 GAGGAGACTGGCGATGGTTC 60.179 60.000 0.00 0.00 44.43 3.62
76 77 1.296715 GGCGATGGTTCTGGTGTCT 59.703 57.895 0.00 0.00 0.00 3.41
96 97 1.941377 TAGCCGACCCTTTACTTCCA 58.059 50.000 0.00 0.00 0.00 3.53
97 98 1.286248 AGCCGACCCTTTACTTCCAT 58.714 50.000 0.00 0.00 0.00 3.41
121 122 1.903183 TCCATCATGTCACCCACGTAA 59.097 47.619 0.00 0.00 0.00 3.18
123 124 1.658596 CATCATGTCACCCACGTAACG 59.341 52.381 0.00 0.00 0.00 3.18
134 135 2.126385 CGTAACGCCGGCAGTACA 60.126 61.111 28.98 13.40 0.00 2.90
136 137 1.373246 GTAACGCCGGCAGTACACA 60.373 57.895 28.98 8.70 0.00 3.72
189 190 1.804326 GTACCGGCTGCACACTACG 60.804 63.158 0.00 0.00 0.00 3.51
207 208 1.748493 ACGCACAAGTTTGAATGTGGT 59.252 42.857 7.87 2.15 45.46 4.16
212 213 5.288804 GCACAAGTTTGAATGTGGTATGTT 58.711 37.500 7.87 0.00 45.46 2.71
219 220 2.569853 TGAATGTGGTATGTTCGGAGGT 59.430 45.455 0.00 0.00 0.00 3.85
246 247 2.290008 ACGTGTCACATGAATAGGGCAA 60.290 45.455 3.31 0.00 0.00 4.52
269 270 3.349006 CGATGCCCATAGCCGTGC 61.349 66.667 0.00 0.00 42.71 5.34
337 338 3.129462 GGCAATTAGAAGGCAAGAACCTC 59.871 47.826 0.00 0.00 39.93 3.85
338 339 3.181506 GCAATTAGAAGGCAAGAACCTCG 60.182 47.826 0.00 0.00 39.93 4.63
344 345 0.535102 AGGCAAGAACCTCGGTTGTG 60.535 55.000 5.98 5.53 38.60 3.33
351 352 5.735070 GCAAGAACCTCGGTTGTGTAAATTT 60.735 40.000 5.98 0.00 38.60 1.82
354 355 5.768164 AGAACCTCGGTTGTGTAAATTTCAT 59.232 36.000 5.98 0.00 38.60 2.57
379 380 6.538945 AGTTTCAGGGCTCTTTTTGTAAAA 57.461 33.333 0.00 0.00 0.00 1.52
428 430 7.179516 TGGGTAGATACAGACTGTTTTGTATGA 59.820 37.037 14.50 0.00 39.81 2.15
440 442 8.012957 ACTGTTTTGTATGAATTTGTTACCCA 57.987 30.769 0.00 0.00 0.00 4.51
456 458 7.854166 TGTTACCCAAACCTAAGTTAGAGTA 57.146 36.000 11.66 1.32 37.27 2.59
460 462 7.750947 ACCCAAACCTAAGTTAGAGTATCAT 57.249 36.000 11.66 0.00 33.47 2.45
659 664 5.041951 TGCGACAGATACCATTTCAAAAC 57.958 39.130 0.00 0.00 0.00 2.43
709 740 0.539518 GCTCTCTCTTCCCCCAGAAC 59.460 60.000 0.00 0.00 0.00 3.01
716 747 2.441035 CTTCCCCCAGAACCCCCAAC 62.441 65.000 0.00 0.00 0.00 3.77
823 863 2.230660 CCGCCCCATAATTTCCTCTTC 58.769 52.381 0.00 0.00 0.00 2.87
827 867 3.139211 GCCCCATAATTTCCTCTTCTCCT 59.861 47.826 0.00 0.00 0.00 3.69
1896 1981 3.211963 GCTCATCGGCCGGCAATT 61.212 61.111 30.85 8.82 0.00 2.32
1972 2057 9.628500 AGTATCTTAAGGAAAATGGATTGGTAC 57.372 33.333 1.85 0.00 0.00 3.34
2158 2243 6.949578 ACAAGGTATTCAAATTTTGATGCG 57.050 33.333 12.39 1.49 39.84 4.73
2189 2274 6.352516 ACCACATATTCCAATCTCTGTCTTC 58.647 40.000 0.00 0.00 0.00 2.87
2248 2333 0.325933 ATGCTGGAGCTGCTAACACA 59.674 50.000 6.82 6.81 42.66 3.72
2257 2342 4.261072 GGAGCTGCTAACACATGATGAATG 60.261 45.833 0.15 0.00 42.48 2.67
2258 2343 4.520179 AGCTGCTAACACATGATGAATGA 58.480 39.130 0.00 0.00 38.72 2.57
2262 2347 6.624423 GCTGCTAACACATGATGAATGAAGTT 60.624 38.462 0.00 0.00 38.72 2.66
2265 2350 8.400186 TGCTAACACATGATGAATGAAGTTATG 58.600 33.333 0.00 0.00 38.43 1.90
2266 2351 8.400947 GCTAACACATGATGAATGAAGTTATGT 58.599 33.333 0.00 0.00 38.43 2.29
2268 2353 8.975410 AACACATGATGAATGAAGTTATGTTG 57.025 30.769 0.00 0.00 38.72 3.33
2269 2354 7.031372 ACACATGATGAATGAAGTTATGTTGC 58.969 34.615 0.00 0.00 38.72 4.17
2270 2355 7.094075 ACACATGATGAATGAAGTTATGTTGCT 60.094 33.333 0.00 0.00 38.72 3.91
2271 2356 8.400186 CACATGATGAATGAAGTTATGTTGCTA 58.600 33.333 0.00 0.00 38.72 3.49
2272 2357 8.959548 ACATGATGAATGAAGTTATGTTGCTAA 58.040 29.630 0.00 0.00 38.72 3.09
2273 2358 9.229784 CATGATGAATGAAGTTATGTTGCTAAC 57.770 33.333 0.00 0.00 38.72 2.34
2274 2359 8.334263 TGATGAATGAAGTTATGTTGCTAACA 57.666 30.769 4.56 4.56 46.94 2.41
2275 2360 8.236586 TGATGAATGAAGTTATGTTGCTAACAC 58.763 33.333 4.23 0.00 45.50 3.32
2276 2361 7.503521 TGAATGAAGTTATGTTGCTAACACA 57.496 32.000 4.23 1.51 45.50 3.72
2277 2362 8.109705 TGAATGAAGTTATGTTGCTAACACAT 57.890 30.769 4.23 1.33 45.50 3.21
2278 2363 8.575589 TGAATGAAGTTATGTTGCTAACACATT 58.424 29.630 13.34 13.34 45.50 2.71
2279 2364 8.970691 AATGAAGTTATGTTGCTAACACATTC 57.029 30.769 4.23 6.95 45.50 2.67
2280 2365 7.503521 TGAAGTTATGTTGCTAACACATTCA 57.496 32.000 4.23 8.75 45.50 2.57
2281 2366 8.109705 TGAAGTTATGTTGCTAACACATTCAT 57.890 30.769 4.23 0.00 45.50 2.57
2282 2367 8.575589 TGAAGTTATGTTGCTAACACATTCATT 58.424 29.630 4.23 0.00 45.50 2.57
2283 2368 9.410556 GAAGTTATGTTGCTAACACATTCATTT 57.589 29.630 4.23 0.00 45.50 2.32
2453 2549 6.264292 AGTGAGTAGTATATCTGCACTCTTGG 59.736 42.308 0.00 0.00 37.20 3.61
2479 4071 4.403432 TCATTCCATGAAGAAAGAATGGCC 59.597 41.667 15.62 0.00 43.65 5.36
2603 4200 6.442564 TGGTAAAGAGTAAGCCTCCTTTGATA 59.557 38.462 0.00 0.00 41.47 2.15
2625 4222 1.202348 GCACCAATCAAAGGGCTACAC 59.798 52.381 0.00 0.00 0.00 2.90
2632 4233 0.872388 CAAAGGGCTACACGTGTTCC 59.128 55.000 28.55 25.52 0.00 3.62
2633 4234 0.763035 AAAGGGCTACACGTGTTCCT 59.237 50.000 28.55 25.36 0.00 3.36
2634 4235 0.763035 AAGGGCTACACGTGTTCCTT 59.237 50.000 29.00 29.00 31.66 3.36
2635 4236 0.763035 AGGGCTACACGTGTTCCTTT 59.237 50.000 28.55 16.37 0.00 3.11
2657 4258 1.487300 TATGCCCAGCAATGCAACAT 58.513 45.000 8.35 7.68 43.62 2.71
2866 4505 5.692115 TCTCCACAACCATATCAAGCTTA 57.308 39.130 0.00 0.00 0.00 3.09
2884 4523 3.800506 GCTTATACCGCGTCACTTTGTAT 59.199 43.478 4.92 6.27 0.00 2.29
2937 4576 7.615403 TGGACAGTATGAATTATCAGCTATCC 58.385 38.462 0.00 4.54 39.69 2.59
2976 4615 6.591448 CAGATCGCAAAATCTACCTGCATATA 59.409 38.462 0.00 0.00 34.21 0.86
2977 4616 7.118245 CAGATCGCAAAATCTACCTGCATATAA 59.882 37.037 0.00 0.00 34.21 0.98
2978 4617 7.661437 AGATCGCAAAATCTACCTGCATATAAA 59.339 33.333 0.00 0.00 34.21 1.40
2979 4618 7.744087 TCGCAAAATCTACCTGCATATAAAT 57.256 32.000 0.00 0.00 35.78 1.40
2980 4619 7.584108 TCGCAAAATCTACCTGCATATAAATG 58.416 34.615 0.00 0.00 35.78 2.32
2981 4620 7.443879 TCGCAAAATCTACCTGCATATAAATGA 59.556 33.333 0.00 0.00 35.78 2.57
2982 4621 8.239314 CGCAAAATCTACCTGCATATAAATGAT 58.761 33.333 0.00 0.00 35.78 2.45
2983 4622 9.918630 GCAAAATCTACCTGCATATAAATGATT 57.081 29.630 0.00 0.00 34.84 2.57
2992 4631 9.723601 ACCTGCATATAAATGATTGTTTTTGTT 57.276 25.926 0.00 0.00 34.84 2.83
3003 4642 8.880878 ATGATTGTTTTTGTTAAACAGTACCC 57.119 30.769 0.00 0.00 40.70 3.69
3004 4643 7.266400 TGATTGTTTTTGTTAAACAGTACCCC 58.734 34.615 0.00 0.00 40.70 4.95
3005 4644 6.600882 TTGTTTTTGTTAAACAGTACCCCA 57.399 33.333 0.00 0.00 40.70 4.96
3006 4645 6.793505 TGTTTTTGTTAAACAGTACCCCAT 57.206 33.333 0.00 0.00 35.45 4.00
3007 4646 7.184067 TGTTTTTGTTAAACAGTACCCCATT 57.816 32.000 0.00 0.00 35.45 3.16
3008 4647 7.042335 TGTTTTTGTTAAACAGTACCCCATTG 58.958 34.615 0.00 0.00 35.45 2.82
3009 4648 6.793505 TTTTGTTAAACAGTACCCCATTGT 57.206 33.333 0.00 0.00 0.00 2.71
3010 4649 6.394025 TTTGTTAAACAGTACCCCATTGTC 57.606 37.500 0.00 0.00 0.00 3.18
3011 4650 5.050126 TGTTAAACAGTACCCCATTGTCA 57.950 39.130 0.00 0.00 0.00 3.58
3012 4651 4.822896 TGTTAAACAGTACCCCATTGTCAC 59.177 41.667 0.00 0.00 0.00 3.67
3013 4652 3.586470 AAACAGTACCCCATTGTCACA 57.414 42.857 0.00 0.00 0.00 3.58
3014 4653 2.561478 ACAGTACCCCATTGTCACAC 57.439 50.000 0.00 0.00 0.00 3.82
3015 4654 1.771854 ACAGTACCCCATTGTCACACA 59.228 47.619 0.00 0.00 0.00 3.72
3016 4655 2.375174 ACAGTACCCCATTGTCACACAT 59.625 45.455 0.00 0.00 0.00 3.21
3017 4656 3.585289 ACAGTACCCCATTGTCACACATA 59.415 43.478 0.00 0.00 0.00 2.29
3018 4657 4.227300 ACAGTACCCCATTGTCACACATAT 59.773 41.667 0.00 0.00 0.00 1.78
3019 4658 5.192927 CAGTACCCCATTGTCACACATATT 58.807 41.667 0.00 0.00 0.00 1.28
3020 4659 5.652014 CAGTACCCCATTGTCACACATATTT 59.348 40.000 0.00 0.00 0.00 1.40
3021 4660 6.152661 CAGTACCCCATTGTCACACATATTTT 59.847 38.462 0.00 0.00 0.00 1.82
3022 4661 6.723977 AGTACCCCATTGTCACACATATTTTT 59.276 34.615 0.00 0.00 0.00 1.94
3023 4662 5.792741 ACCCCATTGTCACACATATTTTTG 58.207 37.500 0.00 0.00 0.00 2.44
3024 4663 4.630940 CCCCATTGTCACACATATTTTTGC 59.369 41.667 0.00 0.00 0.00 3.68
3025 4664 4.630940 CCCATTGTCACACATATTTTTGCC 59.369 41.667 0.00 0.00 0.00 4.52
3026 4665 5.236282 CCATTGTCACACATATTTTTGCCA 58.764 37.500 0.00 0.00 0.00 4.92
3027 4666 5.875910 CCATTGTCACACATATTTTTGCCAT 59.124 36.000 0.00 0.00 0.00 4.40
3028 4667 6.372103 CCATTGTCACACATATTTTTGCCATT 59.628 34.615 0.00 0.00 0.00 3.16
3029 4668 7.094720 CCATTGTCACACATATTTTTGCCATTT 60.095 33.333 0.00 0.00 0.00 2.32
3030 4669 8.933807 CATTGTCACACATATTTTTGCCATTTA 58.066 29.630 0.00 0.00 0.00 1.40
3031 4670 8.531622 TTGTCACACATATTTTTGCCATTTAG 57.468 30.769 0.00 0.00 0.00 1.85
3032 4671 7.890515 TGTCACACATATTTTTGCCATTTAGA 58.109 30.769 0.00 0.00 0.00 2.10
3033 4672 7.812191 TGTCACACATATTTTTGCCATTTAGAC 59.188 33.333 0.00 0.00 0.00 2.59
3034 4673 7.275560 GTCACACATATTTTTGCCATTTAGACC 59.724 37.037 0.00 0.00 0.00 3.85
3035 4674 7.178274 TCACACATATTTTTGCCATTTAGACCT 59.822 33.333 0.00 0.00 0.00 3.85
3036 4675 7.489113 CACACATATTTTTGCCATTTAGACCTC 59.511 37.037 0.00 0.00 0.00 3.85
3037 4676 7.178274 ACACATATTTTTGCCATTTAGACCTCA 59.822 33.333 0.00 0.00 0.00 3.86
3038 4677 7.703621 CACATATTTTTGCCATTTAGACCTCAG 59.296 37.037 0.00 0.00 0.00 3.35
3039 4678 7.397192 ACATATTTTTGCCATTTAGACCTCAGT 59.603 33.333 0.00 0.00 0.00 3.41
3040 4679 5.452078 TTTTTGCCATTTAGACCTCAGTG 57.548 39.130 0.00 0.00 0.00 3.66
3041 4680 3.788227 TTGCCATTTAGACCTCAGTGT 57.212 42.857 0.00 0.00 0.00 3.55
3042 4681 3.788227 TGCCATTTAGACCTCAGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
3043 4682 4.098914 TGCCATTTAGACCTCAGTGTTT 57.901 40.909 0.00 0.00 0.00 2.83
3044 4683 4.072131 TGCCATTTAGACCTCAGTGTTTC 58.928 43.478 0.00 0.00 0.00 2.78
3045 4684 4.072131 GCCATTTAGACCTCAGTGTTTCA 58.928 43.478 0.00 0.00 0.00 2.69
3046 4685 4.702131 GCCATTTAGACCTCAGTGTTTCAT 59.298 41.667 0.00 0.00 0.00 2.57
3047 4686 5.163713 GCCATTTAGACCTCAGTGTTTCATC 60.164 44.000 0.00 0.00 0.00 2.92
3048 4687 5.939883 CCATTTAGACCTCAGTGTTTCATCA 59.060 40.000 0.00 0.00 0.00 3.07
3049 4688 6.093219 CCATTTAGACCTCAGTGTTTCATCAG 59.907 42.308 0.00 0.00 0.00 2.90
3050 4689 6.419484 TTTAGACCTCAGTGTTTCATCAGA 57.581 37.500 0.00 0.00 0.00 3.27
3051 4690 4.963318 AGACCTCAGTGTTTCATCAGAA 57.037 40.909 0.00 0.00 0.00 3.02
3052 4691 5.495926 AGACCTCAGTGTTTCATCAGAAT 57.504 39.130 0.00 0.00 32.89 2.40
3053 4692 5.874093 AGACCTCAGTGTTTCATCAGAATT 58.126 37.500 0.00 0.00 32.89 2.17
3054 4693 5.936956 AGACCTCAGTGTTTCATCAGAATTC 59.063 40.000 0.00 0.00 32.89 2.17
3055 4694 4.692625 ACCTCAGTGTTTCATCAGAATTCG 59.307 41.667 0.00 0.00 32.89 3.34
3056 4695 4.931601 CCTCAGTGTTTCATCAGAATTCGA 59.068 41.667 0.00 1.20 32.89 3.71
3057 4696 5.583854 CCTCAGTGTTTCATCAGAATTCGAT 59.416 40.000 0.00 3.60 32.89 3.59
3058 4697 6.413018 TCAGTGTTTCATCAGAATTCGATG 57.587 37.500 23.06 23.06 41.38 3.84
3059 4698 5.352293 TCAGTGTTTCATCAGAATTCGATGG 59.648 40.000 25.86 15.50 40.58 3.51
3060 4699 5.122869 CAGTGTTTCATCAGAATTCGATGGT 59.877 40.000 25.86 7.33 40.58 3.55
3061 4700 5.122869 AGTGTTTCATCAGAATTCGATGGTG 59.877 40.000 25.86 16.51 40.58 4.17
3062 4701 5.003160 TGTTTCATCAGAATTCGATGGTGT 58.997 37.500 25.86 0.00 40.58 4.16
3063 4702 6.092122 GTGTTTCATCAGAATTCGATGGTGTA 59.908 38.462 25.86 10.25 40.58 2.90
3064 4703 6.823182 TGTTTCATCAGAATTCGATGGTGTAT 59.177 34.615 25.86 5.95 40.58 2.29
3065 4704 6.849588 TTCATCAGAATTCGATGGTGTATG 57.150 37.500 25.86 13.91 40.58 2.39
3066 4705 5.917462 TCATCAGAATTCGATGGTGTATGT 58.083 37.500 25.86 0.00 40.58 2.29
3067 4706 7.049799 TCATCAGAATTCGATGGTGTATGTA 57.950 36.000 25.86 11.78 40.58 2.29
3068 4707 7.670364 TCATCAGAATTCGATGGTGTATGTAT 58.330 34.615 25.86 0.96 40.58 2.29
3069 4708 7.599998 TCATCAGAATTCGATGGTGTATGTATG 59.400 37.037 25.86 10.14 40.58 2.39
3070 4709 6.816136 TCAGAATTCGATGGTGTATGTATGT 58.184 36.000 0.00 0.00 0.00 2.29
3071 4710 7.272244 TCAGAATTCGATGGTGTATGTATGTT 58.728 34.615 0.00 0.00 0.00 2.71
3072 4711 7.768582 TCAGAATTCGATGGTGTATGTATGTTT 59.231 33.333 0.00 0.00 0.00 2.83
3073 4712 8.064222 CAGAATTCGATGGTGTATGTATGTTTC 58.936 37.037 0.00 0.00 0.00 2.78
3074 4713 7.987458 AGAATTCGATGGTGTATGTATGTTTCT 59.013 33.333 0.00 0.00 0.00 2.52
3075 4714 8.506168 AATTCGATGGTGTATGTATGTTTCTT 57.494 30.769 0.00 0.00 0.00 2.52
3076 4715 7.534085 TTCGATGGTGTATGTATGTTTCTTC 57.466 36.000 0.00 0.00 0.00 2.87
3077 4716 6.873997 TCGATGGTGTATGTATGTTTCTTCT 58.126 36.000 0.00 0.00 0.00 2.85
3078 4717 7.327975 TCGATGGTGTATGTATGTTTCTTCTT 58.672 34.615 0.00 0.00 0.00 2.52
3079 4718 7.491372 TCGATGGTGTATGTATGTTTCTTCTTC 59.509 37.037 0.00 0.00 0.00 2.87
3080 4719 7.492669 CGATGGTGTATGTATGTTTCTTCTTCT 59.507 37.037 0.00 0.00 0.00 2.85
3081 4720 9.167311 GATGGTGTATGTATGTTTCTTCTTCTT 57.833 33.333 0.00 0.00 0.00 2.52
3082 4721 8.918202 TGGTGTATGTATGTTTCTTCTTCTTT 57.082 30.769 0.00 0.00 0.00 2.52
3083 4722 8.999431 TGGTGTATGTATGTTTCTTCTTCTTTC 58.001 33.333 0.00 0.00 0.00 2.62
3084 4723 9.220767 GGTGTATGTATGTTTCTTCTTCTTTCT 57.779 33.333 0.00 0.00 0.00 2.52
3091 4730 9.617975 GTATGTTTCTTCTTCTTTCTTGATTGG 57.382 33.333 0.00 0.00 0.00 3.16
3092 4731 7.880160 TGTTTCTTCTTCTTTCTTGATTGGA 57.120 32.000 0.00 0.00 0.00 3.53
3093 4732 8.469309 TGTTTCTTCTTCTTTCTTGATTGGAT 57.531 30.769 0.00 0.00 0.00 3.41
3094 4733 8.917088 TGTTTCTTCTTCTTTCTTGATTGGATT 58.083 29.630 0.00 0.00 0.00 3.01
3095 4734 9.755804 GTTTCTTCTTCTTTCTTGATTGGATTT 57.244 29.630 0.00 0.00 0.00 2.17
3115 4754 9.487442 TGGATTTTATTATGCTTTACCTTTCCT 57.513 29.630 0.00 0.00 0.00 3.36
3116 4755 9.967346 GGATTTTATTATGCTTTACCTTTCCTC 57.033 33.333 0.00 0.00 0.00 3.71
3117 4756 9.967346 GATTTTATTATGCTTTACCTTTCCTCC 57.033 33.333 0.00 0.00 0.00 4.30
3118 4757 7.891498 TTTATTATGCTTTACCTTTCCTCCC 57.109 36.000 0.00 0.00 0.00 4.30
3119 4758 4.938575 TTATGCTTTACCTTTCCTCCCA 57.061 40.909 0.00 0.00 0.00 4.37
3120 4759 2.879103 TGCTTTACCTTTCCTCCCAG 57.121 50.000 0.00 0.00 0.00 4.45
3121 4760 1.354368 TGCTTTACCTTTCCTCCCAGG 59.646 52.381 0.00 0.00 36.46 4.45
3122 4761 1.633945 GCTTTACCTTTCCTCCCAGGA 59.366 52.381 0.00 0.00 44.10 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.552083 TTTTTATAGAAAGACGGTAAGGGAAC 57.448 34.615 0.00 0.00 0.00 3.62
30 31 0.385390 CCGCCTCTGTTGCTGTTTTT 59.615 50.000 0.00 0.00 0.00 1.94
31 32 0.465460 TCCGCCTCTGTTGCTGTTTT 60.465 50.000 0.00 0.00 0.00 2.43
32 33 0.886490 CTCCGCCTCTGTTGCTGTTT 60.886 55.000 0.00 0.00 0.00 2.83
38 39 1.216710 GTCTCCTCCGCCTCTGTTG 59.783 63.158 0.00 0.00 0.00 3.33
68 69 1.218316 GGGTCGGCTAAGACACCAG 59.782 63.158 9.07 0.00 42.62 4.00
76 77 2.259012 TGGAAGTAAAGGGTCGGCTAA 58.741 47.619 0.00 0.00 0.00 3.09
96 97 1.143813 GGGTGACATGATGGAGGGAT 58.856 55.000 0.00 0.00 0.00 3.85
97 98 0.253113 TGGGTGACATGATGGAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
130 131 1.365699 CCTTGTATGGCCGTGTGTAC 58.634 55.000 8.05 0.00 0.00 2.90
189 190 4.870363 ACATACCACATTCAAACTTGTGC 58.130 39.130 0.00 0.00 41.47 4.57
219 220 2.900716 TTCATGTGACACGTGGAAGA 57.099 45.000 24.15 6.26 35.86 2.87
246 247 1.227263 GCTATGGGCATCGTCGTGT 60.227 57.895 0.00 0.00 41.35 4.49
332 333 6.399639 AATGAAATTTACACAACCGAGGTT 57.600 33.333 0.93 0.93 33.05 3.50
337 338 8.789881 TGAAACTAATGAAATTTACACAACCG 57.210 30.769 0.00 0.00 37.87 4.44
338 339 9.191995 CCTGAAACTAATGAAATTTACACAACC 57.808 33.333 0.00 0.00 37.87 3.77
344 345 8.056407 AGAGCCCTGAAACTAATGAAATTTAC 57.944 34.615 0.00 0.00 37.87 2.01
351 352 5.833131 ACAAAAAGAGCCCTGAAACTAATGA 59.167 36.000 0.00 0.00 0.00 2.57
354 355 7.648039 TTTACAAAAAGAGCCCTGAAACTAA 57.352 32.000 0.00 0.00 0.00 2.24
383 384 2.151202 CACAGGCCGACAAGTGTTATT 58.849 47.619 0.00 0.00 0.00 1.40
385 386 0.250124 CCACAGGCCGACAAGTGTTA 60.250 55.000 0.00 0.00 0.00 2.41
386 387 1.525995 CCACAGGCCGACAAGTGTT 60.526 57.895 0.00 0.00 0.00 3.32
594 597 4.041049 CACACAAAAAGATGCTGCGTTTA 58.959 39.130 0.00 0.00 0.00 2.01
683 714 1.118965 GGGAAGAGAGAGCTAGGGGC 61.119 65.000 0.00 0.00 42.19 5.80
709 740 2.692741 GGGGAGAGAGGTTGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
716 747 2.760385 GGGTGACGGGGAGAGAGG 60.760 72.222 0.00 0.00 0.00 3.69
810 850 5.365314 AGAAGCGAGGAGAAGAGGAAATTAT 59.635 40.000 0.00 0.00 0.00 1.28
811 851 4.712337 AGAAGCGAGGAGAAGAGGAAATTA 59.288 41.667 0.00 0.00 0.00 1.40
813 853 3.103742 AGAAGCGAGGAGAAGAGGAAAT 58.896 45.455 0.00 0.00 0.00 2.17
814 854 2.494073 GAGAAGCGAGGAGAAGAGGAAA 59.506 50.000 0.00 0.00 0.00 3.13
823 863 2.131067 GGGAGGGAGAAGCGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
827 867 1.984570 CTGTGGGAGGGAGAAGCGA 60.985 63.158 0.00 0.00 0.00 4.93
1278 1345 1.178276 CGCAGAGTAACCTGAGGTCT 58.822 55.000 3.76 0.00 33.12 3.85
1283 1350 2.978824 GGGCGCAGAGTAACCTGA 59.021 61.111 10.83 0.00 36.29 3.86
1919 2004 2.241685 ACGTAGTACCTGGGTCTGATCT 59.758 50.000 0.00 0.00 41.94 2.75
1972 2057 4.527157 GTAGTCCCGGTCGCGACG 62.527 72.222 30.99 24.59 34.10 5.12
2158 2243 7.653713 CAGAGATTGGAATATGTGGTACAGTAC 59.346 40.741 1.59 1.59 41.80 2.73
2189 2274 5.717119 AGCTAGGCAAGAACAAATGAATTG 58.283 37.500 0.00 0.00 44.95 2.32
2248 2333 8.959548 TGTTAGCAACATAACTTCATTCATCAT 58.040 29.630 0.00 0.00 36.25 2.45
2257 2342 8.970691 AATGAATGTGTTAGCAACATAACTTC 57.029 30.769 5.26 5.57 44.35 3.01
2258 2343 9.195411 CAAATGAATGTGTTAGCAACATAACTT 57.805 29.630 5.26 0.00 44.35 2.66
2262 2347 8.355913 TGAACAAATGAATGTGTTAGCAACATA 58.644 29.630 0.00 3.66 44.35 2.29
2265 2350 7.381948 TCATGAACAAATGAATGTGTTAGCAAC 59.618 33.333 0.00 0.00 38.07 4.17
2266 2351 7.432059 TCATGAACAAATGAATGTGTTAGCAA 58.568 30.769 0.00 0.00 38.07 3.91
2267 2352 6.979465 TCATGAACAAATGAATGTGTTAGCA 58.021 32.000 0.00 0.00 38.07 3.49
2268 2353 7.086376 ACTCATGAACAAATGAATGTGTTAGC 58.914 34.615 0.00 0.00 38.07 3.09
2269 2354 7.752239 GGACTCATGAACAAATGAATGTGTTAG 59.248 37.037 0.00 0.00 38.07 2.34
2270 2355 7.448161 AGGACTCATGAACAAATGAATGTGTTA 59.552 33.333 0.00 0.00 38.07 2.41
2271 2356 6.266103 AGGACTCATGAACAAATGAATGTGTT 59.734 34.615 0.00 0.00 40.61 3.32
2272 2357 5.771666 AGGACTCATGAACAAATGAATGTGT 59.228 36.000 0.00 0.00 36.16 3.72
2273 2358 6.263516 AGGACTCATGAACAAATGAATGTG 57.736 37.500 0.00 0.00 36.16 3.21
2274 2359 7.170965 ACTAGGACTCATGAACAAATGAATGT 58.829 34.615 0.00 0.00 36.16 2.71
2275 2360 7.621428 ACTAGGACTCATGAACAAATGAATG 57.379 36.000 0.00 0.00 36.16 2.67
2276 2361 9.334947 CATACTAGGACTCATGAACAAATGAAT 57.665 33.333 0.00 0.00 36.16 2.57
2277 2362 8.321353 ACATACTAGGACTCATGAACAAATGAA 58.679 33.333 0.00 0.00 36.16 2.57
2278 2363 7.765819 CACATACTAGGACTCATGAACAAATGA 59.234 37.037 0.00 0.00 35.31 2.57
2279 2364 7.011763 CCACATACTAGGACTCATGAACAAATG 59.988 40.741 0.00 0.00 0.00 2.32
2280 2365 7.050377 CCACATACTAGGACTCATGAACAAAT 58.950 38.462 0.00 0.00 0.00 2.32
2281 2366 6.013725 ACCACATACTAGGACTCATGAACAAA 60.014 38.462 0.00 0.00 0.00 2.83
2282 2367 5.483937 ACCACATACTAGGACTCATGAACAA 59.516 40.000 0.00 0.00 0.00 2.83
2283 2368 5.023452 ACCACATACTAGGACTCATGAACA 58.977 41.667 0.00 0.00 0.00 3.18
2603 4200 2.102578 GTAGCCCTTTGATTGGTGCAT 58.897 47.619 0.00 0.00 0.00 3.96
2634 4235 3.072944 GTTGCATTGCTGGGCATAAAAA 58.927 40.909 10.49 0.00 40.17 1.94
2635 4236 2.038164 TGTTGCATTGCTGGGCATAAAA 59.962 40.909 10.49 0.00 40.17 1.52
2724 4362 6.595326 TGTGAATGTAACACCTGAGATCAATC 59.405 38.462 0.00 0.00 37.45 2.67
2866 4505 5.870978 AGTTTAATACAAAGTGACGCGGTAT 59.129 36.000 12.47 3.40 0.00 2.73
2884 4523 7.575414 TCACATCTGGCTTTAACAAGTTTAA 57.425 32.000 0.00 0.00 31.86 1.52
2977 4616 9.320352 GGGTACTGTTTAACAAAAACAATCATT 57.680 29.630 0.00 0.00 39.36 2.57
2978 4617 7.929245 GGGGTACTGTTTAACAAAAACAATCAT 59.071 33.333 0.00 0.00 39.36 2.45
2979 4618 7.093465 TGGGGTACTGTTTAACAAAAACAATCA 60.093 33.333 0.00 0.00 39.36 2.57
2980 4619 7.266400 TGGGGTACTGTTTAACAAAAACAATC 58.734 34.615 0.00 0.00 39.36 2.67
2981 4620 7.184067 TGGGGTACTGTTTAACAAAAACAAT 57.816 32.000 0.00 0.00 39.36 2.71
2982 4621 6.600882 TGGGGTACTGTTTAACAAAAACAA 57.399 33.333 0.00 0.00 39.36 2.83
2983 4622 6.793505 ATGGGGTACTGTTTAACAAAAACA 57.206 33.333 0.00 3.54 37.76 2.83
2984 4623 7.042950 ACAATGGGGTACTGTTTAACAAAAAC 58.957 34.615 0.00 0.00 0.00 2.43
2985 4624 7.093465 TGACAATGGGGTACTGTTTAACAAAAA 60.093 33.333 0.00 0.00 0.00 1.94
2986 4625 6.380274 TGACAATGGGGTACTGTTTAACAAAA 59.620 34.615 0.00 0.00 0.00 2.44
2987 4626 5.892119 TGACAATGGGGTACTGTTTAACAAA 59.108 36.000 0.00 0.00 0.00 2.83
2988 4627 5.299782 GTGACAATGGGGTACTGTTTAACAA 59.700 40.000 0.00 0.00 0.00 2.83
2989 4628 4.822896 GTGACAATGGGGTACTGTTTAACA 59.177 41.667 0.00 0.00 0.00 2.41
2990 4629 4.822896 TGTGACAATGGGGTACTGTTTAAC 59.177 41.667 0.00 0.00 0.00 2.01
2991 4630 4.822896 GTGTGACAATGGGGTACTGTTTAA 59.177 41.667 0.00 0.00 0.00 1.52
2992 4631 4.141459 TGTGTGACAATGGGGTACTGTTTA 60.141 41.667 0.00 0.00 0.00 2.01
2993 4632 3.219281 GTGTGACAATGGGGTACTGTTT 58.781 45.455 0.00 0.00 0.00 2.83
2994 4633 2.173782 TGTGTGACAATGGGGTACTGTT 59.826 45.455 0.00 0.00 0.00 3.16
2995 4634 1.771854 TGTGTGACAATGGGGTACTGT 59.228 47.619 0.00 0.00 0.00 3.55
2996 4635 2.559698 TGTGTGACAATGGGGTACTG 57.440 50.000 0.00 0.00 0.00 2.74
2997 4636 5.450818 AATATGTGTGACAATGGGGTACT 57.549 39.130 0.00 0.00 0.00 2.73
2998 4637 6.524101 AAAATATGTGTGACAATGGGGTAC 57.476 37.500 0.00 0.00 0.00 3.34
2999 4638 6.573289 GCAAAAATATGTGTGACAATGGGGTA 60.573 38.462 0.00 0.00 0.00 3.69
3000 4639 5.792741 CAAAAATATGTGTGACAATGGGGT 58.207 37.500 0.00 0.00 0.00 4.95
3001 4640 4.630940 GCAAAAATATGTGTGACAATGGGG 59.369 41.667 0.00 0.00 0.00 4.96
3002 4641 4.630940 GGCAAAAATATGTGTGACAATGGG 59.369 41.667 0.00 0.00 0.00 4.00
3003 4642 5.236282 TGGCAAAAATATGTGTGACAATGG 58.764 37.500 0.00 0.00 0.00 3.16
3004 4643 6.971527 ATGGCAAAAATATGTGTGACAATG 57.028 33.333 0.00 0.00 31.47 2.82
3005 4644 7.982761 AAATGGCAAAAATATGTGTGACAAT 57.017 28.000 0.00 0.00 31.47 2.71
3006 4645 8.363390 TCTAAATGGCAAAAATATGTGTGACAA 58.637 29.630 0.00 0.00 31.47 3.18
3007 4646 7.812191 GTCTAAATGGCAAAAATATGTGTGACA 59.188 33.333 0.00 0.00 32.46 3.58
3008 4647 7.275560 GGTCTAAATGGCAAAAATATGTGTGAC 59.724 37.037 0.00 0.00 0.00 3.67
3009 4648 7.178274 AGGTCTAAATGGCAAAAATATGTGTGA 59.822 33.333 0.00 0.00 0.00 3.58
3010 4649 7.322664 AGGTCTAAATGGCAAAAATATGTGTG 58.677 34.615 0.00 0.00 0.00 3.82
3011 4650 7.178274 TGAGGTCTAAATGGCAAAAATATGTGT 59.822 33.333 0.00 0.00 0.00 3.72
3012 4651 7.546358 TGAGGTCTAAATGGCAAAAATATGTG 58.454 34.615 0.00 0.00 0.00 3.21
3013 4652 7.397192 ACTGAGGTCTAAATGGCAAAAATATGT 59.603 33.333 0.00 0.00 0.00 2.29
3014 4653 7.703621 CACTGAGGTCTAAATGGCAAAAATATG 59.296 37.037 0.00 0.00 0.00 1.78
3015 4654 7.397192 ACACTGAGGTCTAAATGGCAAAAATAT 59.603 33.333 0.00 0.00 0.00 1.28
3016 4655 6.719370 ACACTGAGGTCTAAATGGCAAAAATA 59.281 34.615 0.00 0.00 0.00 1.40
3017 4656 5.539955 ACACTGAGGTCTAAATGGCAAAAAT 59.460 36.000 0.00 0.00 0.00 1.82
3018 4657 4.892934 ACACTGAGGTCTAAATGGCAAAAA 59.107 37.500 0.00 0.00 0.00 1.94
3019 4658 4.469657 ACACTGAGGTCTAAATGGCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
3020 4659 4.098914 ACACTGAGGTCTAAATGGCAAA 57.901 40.909 0.00 0.00 0.00 3.68
3021 4660 3.788227 ACACTGAGGTCTAAATGGCAA 57.212 42.857 0.00 0.00 0.00 4.52
3022 4661 3.788227 AACACTGAGGTCTAAATGGCA 57.212 42.857 0.00 0.00 0.00 4.92
3023 4662 4.072131 TGAAACACTGAGGTCTAAATGGC 58.928 43.478 0.00 0.00 0.00 4.40
3024 4663 5.939883 TGATGAAACACTGAGGTCTAAATGG 59.060 40.000 0.00 0.00 0.00 3.16
3025 4664 6.875726 TCTGATGAAACACTGAGGTCTAAATG 59.124 38.462 0.00 0.00 0.00 2.32
3026 4665 7.009179 TCTGATGAAACACTGAGGTCTAAAT 57.991 36.000 0.00 0.00 0.00 1.40
3027 4666 6.419484 TCTGATGAAACACTGAGGTCTAAA 57.581 37.500 0.00 0.00 0.00 1.85
3028 4667 6.419484 TTCTGATGAAACACTGAGGTCTAA 57.581 37.500 0.00 0.00 0.00 2.10
3029 4668 6.611613 ATTCTGATGAAACACTGAGGTCTA 57.388 37.500 0.00 0.00 35.63 2.59
3030 4669 4.963318 TTCTGATGAAACACTGAGGTCT 57.037 40.909 0.00 0.00 0.00 3.85
3031 4670 5.163913 CGAATTCTGATGAAACACTGAGGTC 60.164 44.000 3.52 0.00 35.63 3.85
3032 4671 4.692625 CGAATTCTGATGAAACACTGAGGT 59.307 41.667 3.52 0.00 35.63 3.85
3033 4672 4.931601 TCGAATTCTGATGAAACACTGAGG 59.068 41.667 3.52 0.00 35.63 3.86
3034 4673 6.456584 CCATCGAATTCTGATGAAACACTGAG 60.457 42.308 27.22 12.98 44.76 3.35
3035 4674 5.352293 CCATCGAATTCTGATGAAACACTGA 59.648 40.000 27.22 7.33 44.76 3.41
3036 4675 5.122869 ACCATCGAATTCTGATGAAACACTG 59.877 40.000 27.22 17.24 44.76 3.66
3037 4676 5.122869 CACCATCGAATTCTGATGAAACACT 59.877 40.000 27.22 10.41 44.76 3.55
3038 4677 5.106555 ACACCATCGAATTCTGATGAAACAC 60.107 40.000 27.22 0.00 44.76 3.32
3039 4678 5.003160 ACACCATCGAATTCTGATGAAACA 58.997 37.500 27.22 0.00 44.76 2.83
3040 4679 5.551760 ACACCATCGAATTCTGATGAAAC 57.448 39.130 27.22 0.00 44.76 2.78
3041 4680 6.823182 ACATACACCATCGAATTCTGATGAAA 59.177 34.615 27.22 16.32 44.76 2.69
3042 4681 6.348498 ACATACACCATCGAATTCTGATGAA 58.652 36.000 27.22 16.54 44.76 2.57
3043 4682 5.917462 ACATACACCATCGAATTCTGATGA 58.083 37.500 27.22 15.79 44.76 2.92
3044 4683 7.386025 ACATACATACACCATCGAATTCTGATG 59.614 37.037 22.53 22.53 42.26 3.07
3045 4684 7.445121 ACATACATACACCATCGAATTCTGAT 58.555 34.615 3.52 5.53 0.00 2.90
3046 4685 6.816136 ACATACATACACCATCGAATTCTGA 58.184 36.000 3.52 3.30 0.00 3.27
3047 4686 7.482654 AACATACATACACCATCGAATTCTG 57.517 36.000 3.52 0.00 0.00 3.02
3048 4687 7.987458 AGAAACATACATACACCATCGAATTCT 59.013 33.333 3.52 0.00 0.00 2.40
3049 4688 8.142994 AGAAACATACATACACCATCGAATTC 57.857 34.615 0.00 0.00 0.00 2.17
3050 4689 8.506168 AAGAAACATACATACACCATCGAATT 57.494 30.769 0.00 0.00 0.00 2.17
3051 4690 7.987458 AGAAGAAACATACATACACCATCGAAT 59.013 33.333 0.00 0.00 0.00 3.34
3052 4691 7.327975 AGAAGAAACATACATACACCATCGAA 58.672 34.615 0.00 0.00 0.00 3.71
3053 4692 6.873997 AGAAGAAACATACATACACCATCGA 58.126 36.000 0.00 0.00 0.00 3.59
3054 4693 7.492669 AGAAGAAGAAACATACATACACCATCG 59.507 37.037 0.00 0.00 0.00 3.84
3055 4694 8.723942 AGAAGAAGAAACATACATACACCATC 57.276 34.615 0.00 0.00 0.00 3.51
3056 4695 9.520515 AAAGAAGAAGAAACATACATACACCAT 57.479 29.630 0.00 0.00 0.00 3.55
3057 4696 8.918202 AAAGAAGAAGAAACATACATACACCA 57.082 30.769 0.00 0.00 0.00 4.17
3058 4697 9.220767 AGAAAGAAGAAGAAACATACATACACC 57.779 33.333 0.00 0.00 0.00 4.16
3065 4704 9.617975 CCAATCAAGAAAGAAGAAGAAACATAC 57.382 33.333 0.00 0.00 0.00 2.39
3066 4705 9.573166 TCCAATCAAGAAAGAAGAAGAAACATA 57.427 29.630 0.00 0.00 0.00 2.29
3067 4706 8.469309 TCCAATCAAGAAAGAAGAAGAAACAT 57.531 30.769 0.00 0.00 0.00 2.71
3068 4707 7.880160 TCCAATCAAGAAAGAAGAAGAAACA 57.120 32.000 0.00 0.00 0.00 2.83
3069 4708 9.755804 AAATCCAATCAAGAAAGAAGAAGAAAC 57.244 29.630 0.00 0.00 0.00 2.78
3089 4728 9.487442 AGGAAAGGTAAAGCATAATAAAATCCA 57.513 29.630 0.00 0.00 0.00 3.41
3090 4729 9.967346 GAGGAAAGGTAAAGCATAATAAAATCC 57.033 33.333 0.00 0.00 0.00 3.01
3091 4730 9.967346 GGAGGAAAGGTAAAGCATAATAAAATC 57.033 33.333 0.00 0.00 0.00 2.17
3092 4731 8.924303 GGGAGGAAAGGTAAAGCATAATAAAAT 58.076 33.333 0.00 0.00 0.00 1.82
3093 4732 7.896496 TGGGAGGAAAGGTAAAGCATAATAAAA 59.104 33.333 0.00 0.00 0.00 1.52
3094 4733 7.415086 TGGGAGGAAAGGTAAAGCATAATAAA 58.585 34.615 0.00 0.00 0.00 1.40
3095 4734 6.975949 TGGGAGGAAAGGTAAAGCATAATAA 58.024 36.000 0.00 0.00 0.00 1.40
3096 4735 6.410388 CCTGGGAGGAAAGGTAAAGCATAATA 60.410 42.308 0.00 0.00 37.67 0.98
3097 4736 5.449553 CTGGGAGGAAAGGTAAAGCATAAT 58.550 41.667 0.00 0.00 0.00 1.28
3098 4737 4.325030 CCTGGGAGGAAAGGTAAAGCATAA 60.325 45.833 0.00 0.00 37.67 1.90
3099 4738 3.202151 CCTGGGAGGAAAGGTAAAGCATA 59.798 47.826 0.00 0.00 37.67 3.14
3100 4739 2.024941 CCTGGGAGGAAAGGTAAAGCAT 60.025 50.000 0.00 0.00 37.67 3.79
3101 4740 1.354368 CCTGGGAGGAAAGGTAAAGCA 59.646 52.381 0.00 0.00 37.67 3.91
3102 4741 1.633945 TCCTGGGAGGAAAGGTAAAGC 59.366 52.381 0.00 0.00 42.51 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.