Multiple sequence alignment - TraesCS4B01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G279400 chr4B 100.000 2222 0 0 1 2222 562440507 562438286 0.000000e+00 4104.0
1 TraesCS4B01G279400 chr4B 95.761 401 17 0 298 698 602680441 602680041 0.000000e+00 647.0
2 TraesCS4B01G279400 chr4B 78.614 505 70 22 983 1475 562425401 562424923 1.290000e-77 300.0
3 TraesCS4B01G279400 chr4B 90.260 154 15 0 994 1147 562628784 562628937 3.740000e-48 202.0
4 TraesCS4B01G279400 chr4B 100.000 28 0 0 1688 1715 556077134 556077161 4.000000e-03 52.8
5 TraesCS4B01G279400 chr4D 90.420 762 48 9 696 1433 449887848 449887088 0.000000e+00 979.0
6 TraesCS4B01G279400 chr4D 90.499 421 31 2 1415 1830 449887071 449886655 4.170000e-152 547.0
7 TraesCS4B01G279400 chr4D 94.813 347 13 1 1881 2222 449886652 449886306 9.030000e-149 536.0
8 TraesCS4B01G279400 chr4D 80.568 669 84 20 979 1623 449876089 449875443 7.180000e-130 473.0
9 TraesCS4B01G279400 chr4D 86.538 312 21 7 2 297 449888146 449887840 7.650000e-85 324.0
10 TraesCS4B01G279400 chr4D 84.321 287 27 9 983 1255 449859947 449859665 4.700000e-67 265.0
11 TraesCS4B01G279400 chr4D 81.752 274 38 10 994 1259 449967665 449967934 3.710000e-53 219.0
12 TraesCS4B01G279400 chr4A 89.958 707 36 18 700 1381 17017991 17018687 0.000000e+00 880.0
13 TraesCS4B01G279400 chr4A 79.443 574 80 17 1665 2209 17021677 17022241 2.690000e-99 372.0
14 TraesCS4B01G279400 chr4A 77.879 660 75 40 703 1311 17028194 17028833 5.870000e-91 344.0
15 TraesCS4B01G279400 chr4A 86.601 306 19 11 1 297 17017703 17017995 3.560000e-83 318.0
16 TraesCS4B01G279400 chr4A 80.147 272 46 7 994 1259 16981148 16980879 1.740000e-46 196.0
17 TraesCS4B01G279400 chr2B 96.742 399 13 0 297 695 550658820 550658422 0.000000e+00 665.0
18 TraesCS4B01G279400 chr2B 95.262 401 19 0 298 698 239421306 239420906 8.650000e-179 636.0
19 TraesCS4B01G279400 chr5B 95.122 410 19 1 290 699 13108179 13108587 0.000000e+00 645.0
20 TraesCS4B01G279400 chr5B 95.729 398 17 0 298 695 477457721 477457324 1.860000e-180 641.0
21 TraesCS4B01G279400 chr5B 95.477 398 18 0 298 695 477484765 477484368 8.650000e-179 636.0
22 TraesCS4B01G279400 chr5B 95.477 398 18 0 298 695 696389503 696389900 8.650000e-179 636.0
23 TraesCS4B01G279400 chr1B 95.262 401 19 0 295 695 131065607 131066007 8.650000e-179 636.0
24 TraesCS4B01G279400 chr3B 94.987 399 19 1 297 695 810703938 810703541 1.870000e-175 625.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G279400 chr4B 562438286 562440507 2221 True 4104.000000 4104 100.0000 1 2222 1 chr4B.!!$R2 2221
1 TraesCS4B01G279400 chr4D 449886306 449888146 1840 True 596.500000 979 90.5675 2 2222 4 chr4D.!!$R3 2220
2 TraesCS4B01G279400 chr4D 449875443 449876089 646 True 473.000000 473 80.5680 979 1623 1 chr4D.!!$R2 644
3 TraesCS4B01G279400 chr4A 17017703 17022241 4538 False 523.333333 880 85.3340 1 2209 3 chr4A.!!$F2 2208
4 TraesCS4B01G279400 chr4A 17028194 17028833 639 False 344.000000 344 77.8790 703 1311 1 chr4A.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 415 0.030235 GACCTTTTTGTGTGACGCCC 59.97 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 4720 0.257039 CAGATCTTTCCCCACCCCAG 59.743 60.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 1.135315 TGGTACAATGCCGTACGAGTC 60.135 52.381 18.76 6.02 42.25 3.36
142 143 4.335647 CCGGCACCTGCTTGTCCT 62.336 66.667 0.00 0.00 41.70 3.85
160 161 4.054671 GTCCTATGCATCACTTGACTAGC 58.945 47.826 0.19 0.00 0.00 3.42
161 162 3.706086 TCCTATGCATCACTTGACTAGCA 59.294 43.478 0.19 5.60 35.30 3.49
207 219 5.643421 AGTGGCCTAATTGATCTCTTGAT 57.357 39.130 3.32 0.00 35.26 2.57
237 258 2.035576 GTCGGTGTTGAACAGGAGTAGT 59.964 50.000 0.00 0.00 0.00 2.73
238 259 3.254166 GTCGGTGTTGAACAGGAGTAGTA 59.746 47.826 0.00 0.00 0.00 1.82
239 260 3.254166 TCGGTGTTGAACAGGAGTAGTAC 59.746 47.826 0.00 0.00 0.00 2.73
242 263 4.216257 GGTGTTGAACAGGAGTAGTACGTA 59.784 45.833 0.00 0.00 0.00 3.57
243 264 5.388944 GTGTTGAACAGGAGTAGTACGTAG 58.611 45.833 0.00 0.00 0.00 3.51
245 266 5.049198 TGTTGAACAGGAGTAGTACGTAGTG 60.049 44.000 13.27 0.00 45.73 2.74
246 267 4.645535 TGAACAGGAGTAGTACGTAGTGT 58.354 43.478 13.27 0.00 45.73 3.55
247 268 5.065914 TGAACAGGAGTAGTACGTAGTGTT 58.934 41.667 13.27 7.16 45.73 3.32
272 294 3.090532 AAGGAGATGGACCGGGCC 61.091 66.667 23.70 23.70 0.00 5.80
292 314 1.081242 GGTTGAGAACCGCGTACGA 60.081 57.895 21.65 0.00 42.62 3.43
293 315 0.457337 GGTTGAGAACCGCGTACGAT 60.457 55.000 21.65 0.00 42.62 3.73
294 316 1.202177 GGTTGAGAACCGCGTACGATA 60.202 52.381 21.65 0.00 42.62 2.92
295 317 2.542411 GGTTGAGAACCGCGTACGATAT 60.542 50.000 21.65 0.66 42.62 1.63
296 318 2.394545 TGAGAACCGCGTACGATATG 57.605 50.000 21.65 5.84 43.93 1.78
297 319 1.002142 TGAGAACCGCGTACGATATGG 60.002 52.381 21.65 16.21 43.93 2.74
298 320 0.313043 AGAACCGCGTACGATATGGG 59.687 55.000 21.65 13.14 43.93 4.00
299 321 1.280206 GAACCGCGTACGATATGGGC 61.280 60.000 21.65 7.42 43.93 5.36
300 322 2.018727 AACCGCGTACGATATGGGCA 62.019 55.000 21.65 0.00 43.93 5.36
301 323 1.300311 CCGCGTACGATATGGGCAA 60.300 57.895 21.65 0.00 43.93 4.52
302 324 0.876777 CCGCGTACGATATGGGCAAA 60.877 55.000 21.65 0.00 43.93 3.68
303 325 1.144969 CGCGTACGATATGGGCAAAT 58.855 50.000 21.65 0.00 43.93 2.32
304 326 1.529438 CGCGTACGATATGGGCAAATT 59.471 47.619 21.65 0.00 43.93 1.82
305 327 2.032377 CGCGTACGATATGGGCAAATTT 60.032 45.455 21.65 0.00 43.93 1.82
306 328 3.296628 GCGTACGATATGGGCAAATTTG 58.703 45.455 21.65 14.03 0.00 2.32
307 329 3.002862 GCGTACGATATGGGCAAATTTGA 59.997 43.478 22.31 1.15 0.00 2.69
308 330 4.523813 CGTACGATATGGGCAAATTTGAC 58.476 43.478 22.31 19.34 34.70 3.18
309 331 4.034626 CGTACGATATGGGCAAATTTGACA 59.965 41.667 25.05 19.67 38.18 3.58
310 332 5.447954 CGTACGATATGGGCAAATTTGACAA 60.448 40.000 25.05 15.50 38.18 3.18
311 333 5.398603 ACGATATGGGCAAATTTGACAAA 57.601 34.783 25.05 13.25 38.18 2.83
312 334 5.167845 ACGATATGGGCAAATTTGACAAAC 58.832 37.500 25.05 8.95 38.18 2.93
313 335 5.047377 ACGATATGGGCAAATTTGACAAACT 60.047 36.000 25.05 6.09 38.18 2.66
314 336 5.868801 CGATATGGGCAAATTTGACAAACTT 59.131 36.000 25.05 8.97 38.18 2.66
315 337 6.183360 CGATATGGGCAAATTTGACAAACTTG 60.183 38.462 25.05 15.87 38.18 3.16
316 338 4.478206 TGGGCAAATTTGACAAACTTGA 57.522 36.364 25.05 2.66 38.18 3.02
317 339 4.187694 TGGGCAAATTTGACAAACTTGAC 58.812 39.130 25.05 20.16 38.18 3.18
318 340 4.081198 TGGGCAAATTTGACAAACTTGACT 60.081 37.500 23.12 0.00 38.18 3.41
319 341 4.875536 GGGCAAATTTGACAAACTTGACTT 59.124 37.500 23.12 2.65 38.18 3.01
320 342 6.045955 GGGCAAATTTGACAAACTTGACTTA 58.954 36.000 23.12 0.00 38.18 2.24
321 343 6.705825 GGGCAAATTTGACAAACTTGACTTAT 59.294 34.615 23.12 0.00 38.18 1.73
322 344 7.870445 GGGCAAATTTGACAAACTTGACTTATA 59.130 33.333 23.12 0.00 38.18 0.98
323 345 8.915654 GGCAAATTTGACAAACTTGACTTATAG 58.084 33.333 22.55 0.00 35.83 1.31
324 346 9.677567 GCAAATTTGACAAACTTGACTTATAGA 57.322 29.630 22.55 0.00 0.00 1.98
326 348 9.878599 AAATTTGACAAACTTGACTTATAGACG 57.121 29.630 1.94 0.00 0.00 4.18
327 349 7.416154 TTTGACAAACTTGACTTATAGACGG 57.584 36.000 0.00 0.00 0.00 4.79
328 350 6.335471 TGACAAACTTGACTTATAGACGGA 57.665 37.500 0.00 0.00 0.00 4.69
329 351 6.751157 TGACAAACTTGACTTATAGACGGAA 58.249 36.000 0.00 0.00 0.00 4.30
330 352 7.383687 TGACAAACTTGACTTATAGACGGAAT 58.616 34.615 0.00 0.00 0.00 3.01
331 353 7.330946 TGACAAACTTGACTTATAGACGGAATG 59.669 37.037 0.00 0.00 0.00 2.67
332 354 7.383687 ACAAACTTGACTTATAGACGGAATGA 58.616 34.615 0.00 0.00 0.00 2.57
333 355 7.876068 ACAAACTTGACTTATAGACGGAATGAA 59.124 33.333 0.00 0.00 0.00 2.57
334 356 8.717821 CAAACTTGACTTATAGACGGAATGAAA 58.282 33.333 0.00 0.00 0.00 2.69
335 357 9.449719 AAACTTGACTTATAGACGGAATGAAAT 57.550 29.630 0.00 0.00 0.00 2.17
336 358 8.649973 ACTTGACTTATAGACGGAATGAAATC 57.350 34.615 0.00 0.00 0.00 2.17
337 359 8.258007 ACTTGACTTATAGACGGAATGAAATCA 58.742 33.333 0.00 0.00 0.00 2.57
338 360 8.420374 TTGACTTATAGACGGAATGAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
339 361 7.552459 TGACTTATAGACGGAATGAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
340 362 7.706607 TGACTTATAGACGGAATGAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
341 363 7.782049 ACTTATAGACGGAATGAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
342 364 8.258007 ACTTATAGACGGAATGAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
343 365 9.265901 CTTATAGACGGAATGAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
344 366 5.808042 AGACGGAATGAAATCACAGAATG 57.192 39.130 0.00 0.00 46.00 2.67
345 367 5.491070 AGACGGAATGAAATCACAGAATGA 58.509 37.500 0.00 0.00 43.13 2.57
346 368 5.939883 AGACGGAATGAAATCACAGAATGAA 59.060 36.000 0.00 0.00 41.93 2.57
347 369 5.942872 ACGGAATGAAATCACAGAATGAAC 58.057 37.500 0.00 0.00 41.93 3.18
348 370 5.707298 ACGGAATGAAATCACAGAATGAACT 59.293 36.000 0.00 0.00 41.93 3.01
349 371 6.878923 ACGGAATGAAATCACAGAATGAACTA 59.121 34.615 0.00 0.00 41.93 2.24
350 372 7.554118 ACGGAATGAAATCACAGAATGAACTAT 59.446 33.333 0.00 0.00 41.93 2.12
351 373 8.066595 CGGAATGAAATCACAGAATGAACTATC 58.933 37.037 0.00 0.00 41.93 2.08
352 374 8.348507 GGAATGAAATCACAGAATGAACTATCC 58.651 37.037 0.00 0.00 41.93 2.59
353 375 6.908870 TGAAATCACAGAATGAACTATCCG 57.091 37.500 0.00 0.00 41.93 4.18
354 376 6.406370 TGAAATCACAGAATGAACTATCCGT 58.594 36.000 0.00 0.00 41.93 4.69
355 377 6.313658 TGAAATCACAGAATGAACTATCCGTG 59.686 38.462 0.00 0.00 41.93 4.94
356 378 5.598416 ATCACAGAATGAACTATCCGTGA 57.402 39.130 0.00 0.00 41.93 4.35
357 379 5.400066 TCACAGAATGAACTATCCGTGAA 57.600 39.130 0.00 0.00 39.69 3.18
358 380 5.789521 TCACAGAATGAACTATCCGTGAAA 58.210 37.500 0.00 0.00 39.69 2.69
359 381 5.637810 TCACAGAATGAACTATCCGTGAAAC 59.362 40.000 0.00 0.00 39.69 2.78
360 382 5.639506 CACAGAATGAACTATCCGTGAAACT 59.360 40.000 0.00 0.00 39.69 2.66
361 383 6.811665 CACAGAATGAACTATCCGTGAAACTA 59.188 38.462 0.00 0.00 39.69 2.24
362 384 7.492669 CACAGAATGAACTATCCGTGAAACTAT 59.507 37.037 0.00 0.00 39.69 2.12
363 385 8.041323 ACAGAATGAACTATCCGTGAAACTATT 58.959 33.333 0.00 0.00 39.69 1.73
364 386 8.883731 CAGAATGAACTATCCGTGAAACTATTT 58.116 33.333 0.00 0.00 39.69 1.40
365 387 9.099454 AGAATGAACTATCCGTGAAACTATTTC 57.901 33.333 0.00 0.00 40.08 2.17
366 388 8.786826 AATGAACTATCCGTGAAACTATTTCA 57.213 30.769 0.00 0.00 46.68 2.69
373 395 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
374 396 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
375 397 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
376 398 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
377 399 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
378 400 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
379 401 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
380 402 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
381 403 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
382 404 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
383 405 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
384 406 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
385 407 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
386 408 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
387 409 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
388 410 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
389 411 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
390 412 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
391 413 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
392 414 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
393 415 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
394 416 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
395 417 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
396 418 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
397 419 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
398 420 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
399 421 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
400 422 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
401 423 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
402 424 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
403 425 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
411 433 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
412 434 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
413 435 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
414 436 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
415 437 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
416 438 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
417 439 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
418 440 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
419 441 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
420 442 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
428 450 2.433868 CACTACACTGTGTAACGCCT 57.566 50.000 20.09 0.00 42.39 5.52
429 451 2.325761 CACTACACTGTGTAACGCCTC 58.674 52.381 20.09 0.00 42.39 4.70
430 452 1.068748 ACTACACTGTGTAACGCCTCG 60.069 52.381 20.09 10.09 42.39 4.63
431 453 0.387622 TACACTGTGTAACGCCTCGC 60.388 55.000 17.74 0.00 42.39 5.03
432 454 1.663388 CACTGTGTAACGCCTCGCA 60.663 57.895 0.00 0.00 42.39 5.10
433 455 1.372997 ACTGTGTAACGCCTCGCAG 60.373 57.895 11.43 11.43 42.39 5.18
434 456 1.080772 CTGTGTAACGCCTCGCAGA 60.081 57.895 8.50 0.00 42.52 4.26
435 457 0.458543 CTGTGTAACGCCTCGCAGAT 60.459 55.000 8.50 0.00 42.52 2.90
436 458 0.812549 TGTGTAACGCCTCGCAGATA 59.187 50.000 0.00 0.00 42.39 1.98
437 459 1.202256 TGTGTAACGCCTCGCAGATAG 60.202 52.381 0.00 0.00 42.39 2.08
438 460 0.384309 TGTAACGCCTCGCAGATAGG 59.616 55.000 0.00 0.00 33.89 2.57
447 469 4.345337 GCAGATAGGCGCTACACC 57.655 61.111 7.64 0.00 0.00 4.16
448 470 1.661821 GCAGATAGGCGCTACACCG 60.662 63.158 7.64 0.00 0.00 4.94
465 487 4.450122 GCCAGCGTCGCACATGTG 62.450 66.667 21.83 21.83 0.00 3.21
466 488 3.043713 CCAGCGTCGCACATGTGT 61.044 61.111 26.01 3.01 0.00 3.72
485 507 9.507329 ACATGTGTGATCAGAAAATTACTAAGT 57.493 29.630 0.00 0.00 0.00 2.24
486 508 9.979270 CATGTGTGATCAGAAAATTACTAAGTC 57.021 33.333 0.00 0.00 0.00 3.01
487 509 8.239681 TGTGTGATCAGAAAATTACTAAGTCG 57.760 34.615 0.00 0.00 0.00 4.18
488 510 7.870954 TGTGTGATCAGAAAATTACTAAGTCGT 59.129 33.333 0.00 0.00 0.00 4.34
489 511 8.162880 GTGTGATCAGAAAATTACTAAGTCGTG 58.837 37.037 0.00 0.00 0.00 4.35
490 512 7.870954 TGTGATCAGAAAATTACTAAGTCGTGT 59.129 33.333 0.00 0.00 0.00 4.49
491 513 8.162880 GTGATCAGAAAATTACTAAGTCGTGTG 58.837 37.037 0.00 0.00 0.00 3.82
492 514 6.462073 TCAGAAAATTACTAAGTCGTGTGC 57.538 37.500 0.00 0.00 0.00 4.57
493 515 5.986741 TCAGAAAATTACTAAGTCGTGTGCA 59.013 36.000 0.00 0.00 0.00 4.57
494 516 6.145534 TCAGAAAATTACTAAGTCGTGTGCAG 59.854 38.462 0.00 0.00 0.00 4.41
495 517 4.663636 AAATTACTAAGTCGTGTGCAGC 57.336 40.909 0.00 0.00 0.00 5.25
496 518 1.693467 TTACTAAGTCGTGTGCAGCG 58.307 50.000 4.41 4.41 0.00 5.18
497 519 0.731514 TACTAAGTCGTGTGCAGCGC 60.732 55.000 0.00 0.00 0.00 5.92
498 520 2.730672 CTAAGTCGTGTGCAGCGCC 61.731 63.158 2.29 0.00 0.00 6.53
499 521 3.220999 TAAGTCGTGTGCAGCGCCT 62.221 57.895 2.29 0.00 0.00 5.52
502 524 4.600576 TCGTGTGCAGCGCCTGAA 62.601 61.111 2.29 0.00 32.44 3.02
503 525 3.648982 CGTGTGCAGCGCCTGAAA 61.649 61.111 2.29 0.00 32.44 2.69
504 526 2.253452 GTGTGCAGCGCCTGAAAG 59.747 61.111 2.29 0.00 32.44 2.62
505 527 3.663176 TGTGCAGCGCCTGAAAGC 61.663 61.111 2.29 0.00 32.44 3.51
506 528 3.360340 GTGCAGCGCCTGAAAGCT 61.360 61.111 2.29 0.00 45.74 3.74
507 529 2.034879 GTGCAGCGCCTGAAAGCTA 61.035 57.895 2.29 0.00 42.52 3.32
508 530 1.742880 TGCAGCGCCTGAAAGCTAG 60.743 57.895 2.29 0.00 42.52 3.42
509 531 2.467826 GCAGCGCCTGAAAGCTAGG 61.468 63.158 2.29 0.00 42.52 3.02
514 536 2.268920 CCTGAAAGCTAGGCGCCA 59.731 61.111 31.54 14.00 40.39 5.69
515 537 2.109126 CCTGAAAGCTAGGCGCCAC 61.109 63.158 31.54 17.93 40.39 5.01
516 538 1.375908 CTGAAAGCTAGGCGCCACA 60.376 57.895 31.54 15.42 40.39 4.17
517 539 1.639298 CTGAAAGCTAGGCGCCACAC 61.639 60.000 31.54 17.11 40.39 3.82
518 540 1.376037 GAAAGCTAGGCGCCACACT 60.376 57.895 31.54 19.31 40.39 3.55
519 541 0.108329 GAAAGCTAGGCGCCACACTA 60.108 55.000 31.54 11.42 40.39 2.74
520 542 0.541863 AAAGCTAGGCGCCACACTAT 59.458 50.000 31.54 9.39 40.39 2.12
521 543 1.410004 AAGCTAGGCGCCACACTATA 58.590 50.000 31.54 10.17 40.39 1.31
522 544 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
523 545 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
524 546 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
525 547 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
536 558 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
537 559 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
538 560 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
539 561 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
550 572 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
551 573 1.676678 CCTAGCTCCTAGGCGTTGCA 61.677 60.000 2.96 0.00 45.64 4.08
552 574 0.528684 CTAGCTCCTAGGCGTTGCAC 60.529 60.000 2.96 0.00 37.29 4.57
553 575 0.970937 TAGCTCCTAGGCGTTGCACT 60.971 55.000 2.96 0.00 37.29 4.40
554 576 0.970937 AGCTCCTAGGCGTTGCACTA 60.971 55.000 2.96 0.00 37.29 2.74
555 577 0.528684 GCTCCTAGGCGTTGCACTAG 60.529 60.000 2.96 2.78 37.12 2.57
556 578 0.818296 CTCCTAGGCGTTGCACTAGT 59.182 55.000 2.96 0.00 35.93 2.57
557 579 0.530744 TCCTAGGCGTTGCACTAGTG 59.469 55.000 18.93 18.93 35.93 2.74
567 589 4.409342 CACTAGTGCAGCGCCTAG 57.591 61.111 10.54 14.52 36.35 3.02
578 600 4.180946 CGCCTAGCTCTCACGCGT 62.181 66.667 5.58 5.58 38.12 6.01
579 601 2.182030 GCCTAGCTCTCACGCGTT 59.818 61.111 10.22 0.00 34.40 4.84
580 602 2.161486 GCCTAGCTCTCACGCGTTG 61.161 63.158 10.22 5.73 34.40 4.10
581 603 2.161486 CCTAGCTCTCACGCGTTGC 61.161 63.158 10.22 12.18 34.40 4.17
582 604 1.444383 CTAGCTCTCACGCGTTGCA 60.444 57.895 10.22 0.00 34.40 4.08
583 605 1.678269 CTAGCTCTCACGCGTTGCAC 61.678 60.000 10.22 0.00 34.40 4.57
584 606 2.142357 TAGCTCTCACGCGTTGCACT 62.142 55.000 10.22 6.39 34.40 4.40
585 607 1.733041 GCTCTCACGCGTTGCACTA 60.733 57.895 10.22 0.00 0.00 2.74
586 608 1.678269 GCTCTCACGCGTTGCACTAG 61.678 60.000 10.22 2.54 0.00 2.57
587 609 0.387367 CTCTCACGCGTTGCACTAGT 60.387 55.000 10.22 0.00 0.00 2.57
588 610 0.663269 TCTCACGCGTTGCACTAGTG 60.663 55.000 18.93 18.93 0.00 2.74
598 620 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
599 621 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
600 622 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
601 623 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
602 624 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
611 633 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
612 634 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
613 635 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
614 636 2.105930 GAGAGCTAGGCGCCACAG 59.894 66.667 31.54 25.22 40.39 3.66
615 637 3.438017 GAGAGCTAGGCGCCACAGG 62.438 68.421 31.54 15.94 40.39 4.00
616 638 3.775654 GAGCTAGGCGCCACAGGT 61.776 66.667 31.54 28.75 40.39 4.00
617 639 3.724914 GAGCTAGGCGCCACAGGTC 62.725 68.421 31.53 31.53 40.39 3.85
618 640 4.082523 GCTAGGCGCCACAGGTCA 62.083 66.667 31.54 2.99 0.00 4.02
619 641 2.185350 CTAGGCGCCACAGGTCAG 59.815 66.667 31.54 9.46 0.00 3.51
620 642 4.082523 TAGGCGCCACAGGTCAGC 62.083 66.667 31.54 0.00 0.00 4.26
627 649 4.662961 CACAGGTCAGCCGCGTGA 62.663 66.667 4.92 0.00 42.15 4.35
628 650 3.923864 ACAGGTCAGCCGCGTGAA 61.924 61.111 4.92 0.00 40.50 3.18
629 651 2.664851 CAGGTCAGCCGCGTGAAA 60.665 61.111 4.92 0.00 40.50 2.69
630 652 2.034879 CAGGTCAGCCGCGTGAAAT 61.035 57.895 4.92 0.00 40.50 2.17
631 653 0.739462 CAGGTCAGCCGCGTGAAATA 60.739 55.000 4.92 0.00 40.50 1.40
632 654 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
633 655 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
634 656 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
635 657 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
636 658 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
637 659 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
650 672 8.786826 TGAAATAGTTTCACGGATAGTTCATT 57.213 30.769 1.24 0.00 44.21 2.57
651 673 8.879759 TGAAATAGTTTCACGGATAGTTCATTC 58.120 33.333 1.24 0.00 44.21 2.67
652 674 9.099454 GAAATAGTTTCACGGATAGTTCATTCT 57.901 33.333 0.00 0.00 39.45 2.40
653 675 8.425577 AATAGTTTCACGGATAGTTCATTCTG 57.574 34.615 0.00 0.00 0.00 3.02
654 676 5.794894 AGTTTCACGGATAGTTCATTCTGT 58.205 37.500 0.00 0.00 31.63 3.41
655 677 5.639506 AGTTTCACGGATAGTTCATTCTGTG 59.360 40.000 5.70 5.70 46.17 3.66
662 684 8.964476 ACGGATAGTTCATTCTGTGATTTAAT 57.036 30.769 0.00 0.00 36.54 1.40
663 685 9.396022 ACGGATAGTTCATTCTGTGATTTAATT 57.604 29.630 0.00 0.00 36.54 1.40
669 691 9.003658 AGTTCATTCTGTGATTTAATTTCGTCT 57.996 29.630 0.00 0.00 36.54 4.18
790 821 3.319405 GCGATCTGAAGAATAGACCAGGA 59.681 47.826 0.00 0.00 0.00 3.86
866 905 0.699399 TAAAAGGAACCCGCCATCCA 59.301 50.000 0.00 0.00 38.23 3.41
904 960 4.728772 ACCACTTCAAGTCATTCATCCAA 58.271 39.130 0.00 0.00 0.00 3.53
935 995 3.714871 GAGCTCGGCCTGTCTCTGC 62.715 68.421 0.00 0.00 0.00 4.26
957 1017 1.961277 CAACACTCGCTCACCACCC 60.961 63.158 0.00 0.00 0.00 4.61
968 1028 0.552367 TCACCACCCATCCCTCCATT 60.552 55.000 0.00 0.00 0.00 3.16
969 1029 0.336048 CACCACCCATCCCTCCATTT 59.664 55.000 0.00 0.00 0.00 2.32
970 1030 0.631212 ACCACCCATCCCTCCATTTC 59.369 55.000 0.00 0.00 0.00 2.17
972 1032 0.106015 CACCCATCCCTCCATTTCCC 60.106 60.000 0.00 0.00 0.00 3.97
973 1033 0.554865 ACCCATCCCTCCATTTCCCA 60.555 55.000 0.00 0.00 0.00 4.37
974 1034 0.106015 CCCATCCCTCCATTTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
975 1035 0.106015 CCATCCCTCCATTTCCCACC 60.106 60.000 0.00 0.00 0.00 4.61
976 1036 0.466189 CATCCCTCCATTTCCCACCG 60.466 60.000 0.00 0.00 0.00 4.94
977 1037 1.645402 ATCCCTCCATTTCCCACCGG 61.645 60.000 0.00 0.00 0.00 5.28
1015 1092 4.776322 CGATGGCAAGGGCGGTGA 62.776 66.667 0.00 0.00 42.47 4.02
1021 1098 1.451927 GCAAGGGCGGTGATGATGA 60.452 57.895 0.00 0.00 0.00 2.92
1059 1136 4.228567 TGCAACGTGGTCCTCGCA 62.229 61.111 13.13 0.85 0.00 5.10
1185 1268 1.363443 CAACGGCTGCACCAACAAT 59.637 52.632 0.50 0.00 39.03 2.71
1188 1271 2.568090 GGCTGCACCAACAATCCG 59.432 61.111 0.50 0.00 38.86 4.18
1301 1389 3.548214 GCACATGCGTAGATAGAGTTCGA 60.548 47.826 0.00 0.00 0.00 3.71
1312 1400 5.897050 AGATAGAGTTCGAGTTCATTGACC 58.103 41.667 1.78 0.00 0.00 4.02
1430 1528 7.481642 CAATATAACAGTCTCAGACGTAGGTT 58.518 38.462 0.00 5.89 37.67 3.50
1502 4349 5.329493 GGTTTGACACAACACACTTTCTAC 58.671 41.667 0.00 0.00 0.00 2.59
1523 4370 8.397575 TCTACAAATGTGTTTGCTATTGGTAA 57.602 30.769 0.00 0.00 46.84 2.85
1524 4371 9.019656 TCTACAAATGTGTTTGCTATTGGTAAT 57.980 29.630 0.00 0.00 46.84 1.89
1525 4372 9.638239 CTACAAATGTGTTTGCTATTGGTAATT 57.362 29.630 0.00 0.00 46.84 1.40
1611 4460 1.144716 CTCTAATGCTGAGCGGGCA 59.855 57.895 0.00 4.04 44.05 5.36
1615 4464 0.744414 TAATGCTGAGCGGGCAACTC 60.744 55.000 0.00 0.00 43.14 3.01
1671 4558 1.839747 TGTAGGGCGGTGTGAGGTT 60.840 57.895 0.00 0.00 0.00 3.50
1819 4720 2.338015 CCAGTGCATGTGGGCTGTC 61.338 63.158 9.71 0.00 34.04 3.51
1838 4739 0.257039 CTGGGGTGGGGAAAGATCTG 59.743 60.000 0.00 0.00 0.00 2.90
1839 4740 0.178846 TGGGGTGGGGAAAGATCTGA 60.179 55.000 0.00 0.00 0.00 3.27
1853 4759 5.434182 AAGATCTGAAGGAAGGAAGAAGG 57.566 43.478 0.00 0.00 0.00 3.46
1861 4767 2.039613 AGGAAGGAAGAAGGTTGCTCAG 59.960 50.000 0.00 0.00 0.00 3.35
1870 4776 2.594592 GTTGCTCAGCCGTTGGGT 60.595 61.111 0.00 0.00 34.97 4.51
1872 4778 2.192861 TTGCTCAGCCGTTGGGTTG 61.193 57.895 0.00 0.00 45.20 3.77
1873 4779 3.365265 GCTCAGCCGTTGGGTTGG 61.365 66.667 0.00 0.00 44.08 3.77
1877 4787 1.122632 TCAGCCGTTGGGTTGGACTA 61.123 55.000 0.00 0.00 44.08 2.59
1879 4789 1.125711 AGCCGTTGGGTTGGACTAGT 61.126 55.000 0.00 0.00 34.97 2.57
1938 4848 6.077993 AGACATAGTGGAGCCTATGAATGTA 58.922 40.000 13.53 0.00 44.64 2.29
1957 4867 5.320549 TGTATCCGTTAGTCCTTTCTCAC 57.679 43.478 0.00 0.00 0.00 3.51
1989 4899 1.511768 GCTCGAGGCTTTAGTCGGT 59.488 57.895 15.58 0.00 36.81 4.69
2068 4978 1.185618 GGGGTTGTTGGCCCTTTCTC 61.186 60.000 0.00 0.00 45.39 2.87
2081 4991 2.260481 CCTTTCTCTAAGAACGGTCGC 58.740 52.381 0.00 0.00 38.43 5.19
2092 5002 4.735132 CGGTCGCGGCCTTCTTCA 62.735 66.667 29.47 0.00 0.00 3.02
2101 5011 0.915364 GGCCTTCTTCATGGAGACCT 59.085 55.000 2.13 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.486592 TGTCGTGCTACTTCATTCTCGA 59.513 45.455 0.00 0.00 0.00 4.04
125 126 2.257409 ATAGGACAAGCAGGTGCCGG 62.257 60.000 0.00 0.00 43.38 6.13
142 143 4.738839 GCTCTGCTAGTCAAGTGATGCATA 60.739 45.833 0.00 0.00 31.37 3.14
207 219 3.542676 AACACCGACCACGAGGCA 61.543 61.111 0.00 0.00 42.66 4.75
237 258 5.300034 TCTCCTTGAGTTTGAACACTACGTA 59.700 40.000 0.00 0.00 0.00 3.57
238 259 4.098960 TCTCCTTGAGTTTGAACACTACGT 59.901 41.667 0.00 0.00 0.00 3.57
239 260 4.617959 TCTCCTTGAGTTTGAACACTACG 58.382 43.478 0.00 0.00 0.00 3.51
242 263 4.103153 TCCATCTCCTTGAGTTTGAACACT 59.897 41.667 0.00 0.00 0.00 3.55
243 264 4.214332 GTCCATCTCCTTGAGTTTGAACAC 59.786 45.833 0.00 0.00 0.00 3.32
245 266 3.753797 GGTCCATCTCCTTGAGTTTGAAC 59.246 47.826 0.00 0.00 0.00 3.18
246 267 3.557054 CGGTCCATCTCCTTGAGTTTGAA 60.557 47.826 0.00 0.00 0.00 2.69
247 268 2.028112 CGGTCCATCTCCTTGAGTTTGA 60.028 50.000 0.00 0.00 0.00 2.69
275 297 2.178474 TATCGTACGCGGTTCTCAAC 57.822 50.000 12.47 0.00 38.89 3.18
276 298 2.542205 CCATATCGTACGCGGTTCTCAA 60.542 50.000 12.47 0.00 38.89 3.02
292 314 6.650390 GTCAAGTTTGTCAAATTTGCCCATAT 59.350 34.615 22.24 0.00 37.82 1.78
293 315 5.988561 GTCAAGTTTGTCAAATTTGCCCATA 59.011 36.000 22.24 7.81 37.82 2.74
294 316 4.815846 GTCAAGTTTGTCAAATTTGCCCAT 59.184 37.500 22.24 0.00 37.82 4.00
295 317 4.081198 AGTCAAGTTTGTCAAATTTGCCCA 60.081 37.500 22.24 9.45 37.82 5.36
296 318 4.441792 AGTCAAGTTTGTCAAATTTGCCC 58.558 39.130 22.24 16.49 37.82 5.36
297 319 7.713764 ATAAGTCAAGTTTGTCAAATTTGCC 57.286 32.000 22.24 14.92 37.82 4.52
298 320 9.677567 TCTATAAGTCAAGTTTGTCAAATTTGC 57.322 29.630 22.24 17.95 37.82 3.68
300 322 9.878599 CGTCTATAAGTCAAGTTTGTCAAATTT 57.121 29.630 0.40 0.45 0.00 1.82
301 323 8.504005 CCGTCTATAAGTCAAGTTTGTCAAATT 58.496 33.333 0.40 0.00 0.00 1.82
302 324 7.876068 TCCGTCTATAAGTCAAGTTTGTCAAAT 59.124 33.333 0.40 0.00 0.00 2.32
303 325 7.211573 TCCGTCTATAAGTCAAGTTTGTCAAA 58.788 34.615 0.00 0.00 0.00 2.69
304 326 6.751157 TCCGTCTATAAGTCAAGTTTGTCAA 58.249 36.000 0.00 0.00 0.00 3.18
305 327 6.335471 TCCGTCTATAAGTCAAGTTTGTCA 57.665 37.500 0.00 0.00 0.00 3.58
306 328 7.544566 TCATTCCGTCTATAAGTCAAGTTTGTC 59.455 37.037 0.00 0.00 0.00 3.18
307 329 7.383687 TCATTCCGTCTATAAGTCAAGTTTGT 58.616 34.615 0.00 0.00 0.00 2.83
308 330 7.827819 TCATTCCGTCTATAAGTCAAGTTTG 57.172 36.000 0.00 0.00 0.00 2.93
309 331 8.842358 TTTCATTCCGTCTATAAGTCAAGTTT 57.158 30.769 0.00 0.00 0.00 2.66
310 332 9.099454 GATTTCATTCCGTCTATAAGTCAAGTT 57.901 33.333 0.00 0.00 0.00 2.66
311 333 8.258007 TGATTTCATTCCGTCTATAAGTCAAGT 58.742 33.333 0.00 0.00 0.00 3.16
312 334 8.543774 GTGATTTCATTCCGTCTATAAGTCAAG 58.456 37.037 0.00 0.00 0.00 3.02
313 335 8.038351 TGTGATTTCATTCCGTCTATAAGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
314 336 7.552459 TGTGATTTCATTCCGTCTATAAGTCA 58.448 34.615 0.00 0.00 0.00 3.41
315 337 7.921214 TCTGTGATTTCATTCCGTCTATAAGTC 59.079 37.037 0.00 0.00 0.00 3.01
316 338 7.782049 TCTGTGATTTCATTCCGTCTATAAGT 58.218 34.615 0.00 0.00 0.00 2.24
317 339 8.648557 TTCTGTGATTTCATTCCGTCTATAAG 57.351 34.615 0.00 0.00 0.00 1.73
318 340 9.045223 CATTCTGTGATTTCATTCCGTCTATAA 57.955 33.333 0.00 0.00 0.00 0.98
319 341 8.421002 TCATTCTGTGATTTCATTCCGTCTATA 58.579 33.333 0.00 0.00 0.00 1.31
320 342 7.275183 TCATTCTGTGATTTCATTCCGTCTAT 58.725 34.615 0.00 0.00 0.00 1.98
321 343 6.639563 TCATTCTGTGATTTCATTCCGTCTA 58.360 36.000 0.00 0.00 0.00 2.59
322 344 5.491070 TCATTCTGTGATTTCATTCCGTCT 58.509 37.500 0.00 0.00 0.00 4.18
323 345 5.801350 TCATTCTGTGATTTCATTCCGTC 57.199 39.130 0.00 0.00 0.00 4.79
324 346 5.707298 AGTTCATTCTGTGATTTCATTCCGT 59.293 36.000 0.00 0.00 36.54 4.69
325 347 6.187125 AGTTCATTCTGTGATTTCATTCCG 57.813 37.500 0.00 0.00 36.54 4.30
326 348 8.348507 GGATAGTTCATTCTGTGATTTCATTCC 58.651 37.037 0.00 0.00 36.54 3.01
327 349 8.066595 CGGATAGTTCATTCTGTGATTTCATTC 58.933 37.037 0.00 0.00 36.54 2.67
328 350 7.554118 ACGGATAGTTCATTCTGTGATTTCATT 59.446 33.333 0.00 0.00 36.54 2.57
329 351 7.050377 ACGGATAGTTCATTCTGTGATTTCAT 58.950 34.615 0.00 0.00 36.54 2.57
330 352 6.406370 ACGGATAGTTCATTCTGTGATTTCA 58.594 36.000 0.00 0.00 36.54 2.69
331 353 6.910536 ACGGATAGTTCATTCTGTGATTTC 57.089 37.500 0.00 0.00 36.54 2.17
336 358 5.639506 AGTTTCACGGATAGTTCATTCTGTG 59.360 40.000 5.70 5.70 46.17 3.66
337 359 5.794894 AGTTTCACGGATAGTTCATTCTGT 58.205 37.500 0.00 0.00 31.63 3.41
338 360 8.425577 AATAGTTTCACGGATAGTTCATTCTG 57.574 34.615 0.00 0.00 0.00 3.02
339 361 9.099454 GAAATAGTTTCACGGATAGTTCATTCT 57.901 33.333 0.00 0.00 39.45 2.40
340 362 8.879759 TGAAATAGTTTCACGGATAGTTCATTC 58.120 33.333 1.24 0.00 44.21 2.67
341 363 8.786826 TGAAATAGTTTCACGGATAGTTCATT 57.213 30.769 1.24 0.00 44.21 2.57
354 376 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
355 377 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
356 378 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
357 379 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
358 380 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
359 381 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
360 382 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
361 383 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
362 384 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
363 385 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
364 386 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
365 387 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
366 388 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
367 389 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
368 390 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
369 391 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
370 392 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
371 393 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
372 394 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
373 395 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
374 396 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
375 397 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
376 398 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
377 399 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
378 400 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
379 401 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
380 402 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
381 403 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
382 404 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
383 405 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
384 406 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
385 407 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
386 408 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
394 416 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
395 417 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
396 418 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
397 419 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
398 420 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
399 421 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
400 422 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
401 423 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
402 424 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
403 425 3.244105 CACAGTGTAGTGTGGCGC 58.756 61.111 11.17 0.00 43.56 6.53
409 431 2.325761 GAGGCGTTACACAGTGTAGTG 58.674 52.381 13.20 10.84 44.93 2.74
410 432 1.068748 CGAGGCGTTACACAGTGTAGT 60.069 52.381 13.20 0.00 33.92 2.73
411 433 1.614385 CGAGGCGTTACACAGTGTAG 58.386 55.000 13.20 4.73 33.92 2.74
412 434 0.387622 GCGAGGCGTTACACAGTGTA 60.388 55.000 9.51 9.51 0.00 2.90
413 435 1.663702 GCGAGGCGTTACACAGTGT 60.664 57.895 11.87 11.87 0.00 3.55
414 436 1.617755 CTGCGAGGCGTTACACAGTG 61.618 60.000 0.00 0.00 0.00 3.66
415 437 1.372997 CTGCGAGGCGTTACACAGT 60.373 57.895 0.00 0.00 0.00 3.55
416 438 0.458543 ATCTGCGAGGCGTTACACAG 60.459 55.000 0.00 0.00 0.00 3.66
417 439 0.812549 TATCTGCGAGGCGTTACACA 59.187 50.000 0.00 0.00 0.00 3.72
418 440 1.478137 CTATCTGCGAGGCGTTACAC 58.522 55.000 0.00 0.00 0.00 2.90
419 441 0.384309 CCTATCTGCGAGGCGTTACA 59.616 55.000 0.00 0.00 0.00 2.41
420 442 3.180984 CCTATCTGCGAGGCGTTAC 57.819 57.895 0.00 0.00 0.00 2.50
430 452 1.661821 CGGTGTAGCGCCTATCTGC 60.662 63.158 2.29 0.00 0.00 4.26
431 453 1.661821 GCGGTGTAGCGCCTATCTG 60.662 63.158 16.69 0.00 0.00 2.90
432 454 2.728817 GCGGTGTAGCGCCTATCT 59.271 61.111 16.69 0.00 0.00 1.98
433 455 2.355956 GGCGGTGTAGCGCCTATC 60.356 66.667 32.72 12.40 46.71 2.08
448 470 4.450122 CACATGTGCGACGCTGGC 62.450 66.667 22.08 11.58 0.00 4.85
449 471 3.043713 ACACATGTGCGACGCTGG 61.044 61.111 25.68 9.93 0.00 4.85
450 472 1.629345 ATCACACATGTGCGACGCTG 61.629 55.000 25.68 14.84 45.25 5.18
451 473 1.354337 GATCACACATGTGCGACGCT 61.354 55.000 25.68 6.96 45.25 5.07
452 474 1.059369 GATCACACATGTGCGACGC 59.941 57.895 25.68 14.19 45.25 5.19
453 475 0.367887 CTGATCACACATGTGCGACG 59.632 55.000 25.68 11.76 45.25 5.12
454 476 1.713597 TCTGATCACACATGTGCGAC 58.286 50.000 25.68 15.48 45.25 5.19
455 477 2.453983 TTCTGATCACACATGTGCGA 57.546 45.000 25.68 21.87 45.25 5.10
456 478 3.541071 TTTTCTGATCACACATGTGCG 57.459 42.857 25.68 16.84 45.25 5.34
457 479 6.615088 AGTAATTTTCTGATCACACATGTGC 58.385 36.000 25.68 9.88 45.25 4.57
458 480 9.764870 CTTAGTAATTTTCTGATCACACATGTG 57.235 33.333 24.25 24.25 46.91 3.21
459 481 9.507329 ACTTAGTAATTTTCTGATCACACATGT 57.493 29.630 0.00 0.00 0.00 3.21
460 482 9.979270 GACTTAGTAATTTTCTGATCACACATG 57.021 33.333 0.00 0.00 0.00 3.21
461 483 8.873830 CGACTTAGTAATTTTCTGATCACACAT 58.126 33.333 0.00 0.00 0.00 3.21
462 484 7.870954 ACGACTTAGTAATTTTCTGATCACACA 59.129 33.333 0.00 0.00 0.00 3.72
463 485 8.162880 CACGACTTAGTAATTTTCTGATCACAC 58.837 37.037 0.00 0.00 0.00 3.82
464 486 7.870954 ACACGACTTAGTAATTTTCTGATCACA 59.129 33.333 0.00 0.00 0.00 3.58
465 487 8.162880 CACACGACTTAGTAATTTTCTGATCAC 58.837 37.037 0.00 0.00 0.00 3.06
466 488 7.148639 GCACACGACTTAGTAATTTTCTGATCA 60.149 37.037 0.00 0.00 0.00 2.92
467 489 7.148639 TGCACACGACTTAGTAATTTTCTGATC 60.149 37.037 0.00 0.00 0.00 2.92
468 490 6.649141 TGCACACGACTTAGTAATTTTCTGAT 59.351 34.615 0.00 0.00 0.00 2.90
469 491 5.986741 TGCACACGACTTAGTAATTTTCTGA 59.013 36.000 0.00 0.00 0.00 3.27
470 492 6.223138 TGCACACGACTTAGTAATTTTCTG 57.777 37.500 0.00 0.00 0.00 3.02
471 493 5.107065 GCTGCACACGACTTAGTAATTTTCT 60.107 40.000 0.00 0.00 0.00 2.52
472 494 5.080068 GCTGCACACGACTTAGTAATTTTC 58.920 41.667 0.00 0.00 0.00 2.29
473 495 4.377022 CGCTGCACACGACTTAGTAATTTT 60.377 41.667 0.00 0.00 0.00 1.82
474 496 3.122948 CGCTGCACACGACTTAGTAATTT 59.877 43.478 0.00 0.00 0.00 1.82
475 497 2.666508 CGCTGCACACGACTTAGTAATT 59.333 45.455 0.00 0.00 0.00 1.40
476 498 2.259618 CGCTGCACACGACTTAGTAAT 58.740 47.619 0.00 0.00 0.00 1.89
477 499 1.693467 CGCTGCACACGACTTAGTAA 58.307 50.000 0.00 0.00 0.00 2.24
478 500 0.731514 GCGCTGCACACGACTTAGTA 60.732 55.000 0.00 0.00 0.00 1.82
479 501 2.022129 GCGCTGCACACGACTTAGT 61.022 57.895 0.00 0.00 0.00 2.24
480 502 2.730672 GGCGCTGCACACGACTTAG 61.731 63.158 7.64 0.00 35.06 2.18
481 503 2.736995 GGCGCTGCACACGACTTA 60.737 61.111 7.64 0.00 35.06 2.24
485 507 4.600576 TTCAGGCGCTGCACACGA 62.601 61.111 7.64 0.00 0.00 4.35
486 508 3.584250 CTTTCAGGCGCTGCACACG 62.584 63.158 7.64 0.03 0.00 4.49
487 509 2.253452 CTTTCAGGCGCTGCACAC 59.747 61.111 7.64 0.00 0.00 3.82
488 510 2.730066 TAGCTTTCAGGCGCTGCACA 62.730 55.000 7.64 0.00 37.05 4.57
489 511 1.975363 CTAGCTTTCAGGCGCTGCAC 61.975 60.000 7.64 0.00 37.05 4.57
490 512 1.742880 CTAGCTTTCAGGCGCTGCA 60.743 57.895 7.64 0.00 37.05 4.41
491 513 2.467826 CCTAGCTTTCAGGCGCTGC 61.468 63.158 7.64 2.66 37.05 5.25
492 514 3.805267 CCTAGCTTTCAGGCGCTG 58.195 61.111 7.64 3.67 37.05 5.18
504 526 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
505 527 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
506 528 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
507 529 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
515 537 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
516 538 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
517 539 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
533 555 0.528684 GTGCAACGCCTAGGAGCTAG 60.529 60.000 14.75 3.92 34.16 3.42
534 556 0.970937 AGTGCAACGCCTAGGAGCTA 60.971 55.000 14.75 0.00 45.86 3.32
535 557 0.970937 TAGTGCAACGCCTAGGAGCT 60.971 55.000 14.75 3.79 45.86 4.09
536 558 0.528684 CTAGTGCAACGCCTAGGAGC 60.529 60.000 14.75 10.85 45.86 4.70
537 559 0.818296 ACTAGTGCAACGCCTAGGAG 59.182 55.000 14.75 12.99 45.86 3.69
538 560 0.530744 CACTAGTGCAACGCCTAGGA 59.469 55.000 14.75 0.00 45.86 2.94
539 561 3.050703 CACTAGTGCAACGCCTAGG 57.949 57.895 10.54 3.67 45.86 3.02
550 572 1.880340 GCTAGGCGCTGCACTAGTG 60.880 63.158 18.93 18.93 39.07 2.74
551 573 2.496817 GCTAGGCGCTGCACTAGT 59.503 61.111 21.78 0.00 39.07 2.57
562 584 2.161486 CAACGCGTGAGAGCTAGGC 61.161 63.158 14.98 0.00 34.40 3.93
563 585 2.161486 GCAACGCGTGAGAGCTAGG 61.161 63.158 14.98 0.00 34.40 3.02
564 586 1.444383 TGCAACGCGTGAGAGCTAG 60.444 57.895 14.98 0.00 34.40 3.42
565 587 1.733041 GTGCAACGCGTGAGAGCTA 60.733 57.895 14.98 3.64 34.40 3.32
566 588 2.142357 TAGTGCAACGCGTGAGAGCT 62.142 55.000 14.98 10.58 45.86 4.09
567 589 1.678269 CTAGTGCAACGCGTGAGAGC 61.678 60.000 14.98 15.77 45.86 4.09
568 590 0.387367 ACTAGTGCAACGCGTGAGAG 60.387 55.000 14.98 7.41 45.86 3.20
569 591 0.663269 CACTAGTGCAACGCGTGAGA 60.663 55.000 14.98 0.00 45.86 3.27
570 592 1.775344 CACTAGTGCAACGCGTGAG 59.225 57.895 14.98 10.48 45.86 3.51
571 593 3.930838 CACTAGTGCAACGCGTGA 58.069 55.556 14.98 0.00 45.86 4.35
581 603 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
582 604 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
583 605 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
584 606 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
585 607 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
586 608 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
587 609 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
588 610 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
589 611 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
602 624 2.185350 CTGACCTGTGGCGCCTAG 59.815 66.667 29.70 24.12 0.00 3.02
603 625 4.082523 GCTGACCTGTGGCGCCTA 62.083 66.667 29.70 15.92 0.00 3.93
610 632 4.662961 TCACGCGGCTGACCTGTG 62.663 66.667 12.47 0.00 39.86 3.66
611 633 2.731691 ATTTCACGCGGCTGACCTGT 62.732 55.000 12.47 0.00 0.00 4.00
612 634 0.739462 TATTTCACGCGGCTGACCTG 60.739 55.000 12.47 0.00 0.00 4.00
613 635 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
614 636 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
615 637 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
616 638 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
617 639 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
618 640 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
625 647 8.786826 AATGAACTATCCGTGAAACTATTTCA 57.213 30.769 0.00 0.00 46.68 2.69
626 648 9.099454 AGAATGAACTATCCGTGAAACTATTTC 57.901 33.333 0.00 0.00 40.08 2.17
627 649 8.883731 CAGAATGAACTATCCGTGAAACTATTT 58.116 33.333 0.00 0.00 39.69 1.40
628 650 8.041323 ACAGAATGAACTATCCGTGAAACTATT 58.959 33.333 0.00 0.00 39.69 1.73
629 651 7.492669 CACAGAATGAACTATCCGTGAAACTAT 59.507 37.037 0.00 0.00 39.69 2.12
630 652 6.811665 CACAGAATGAACTATCCGTGAAACTA 59.188 38.462 0.00 0.00 39.69 2.24
631 653 5.639506 CACAGAATGAACTATCCGTGAAACT 59.360 40.000 0.00 0.00 39.69 2.66
632 654 5.637810 TCACAGAATGAACTATCCGTGAAAC 59.362 40.000 0.00 0.00 39.69 2.78
633 655 5.789521 TCACAGAATGAACTATCCGTGAAA 58.210 37.500 0.00 0.00 39.69 2.69
634 656 5.400066 TCACAGAATGAACTATCCGTGAA 57.600 39.130 0.00 0.00 39.69 3.18
635 657 5.598416 ATCACAGAATGAACTATCCGTGA 57.402 39.130 0.00 0.00 41.93 4.35
636 658 6.668541 AAATCACAGAATGAACTATCCGTG 57.331 37.500 0.00 0.00 41.93 4.94
637 659 8.964476 ATTAAATCACAGAATGAACTATCCGT 57.036 30.769 0.00 0.00 41.93 4.69
643 665 9.003658 AGACGAAATTAAATCACAGAATGAACT 57.996 29.630 0.00 0.00 41.93 3.01
671 693 9.699703 GTAGGCAAATTTGACAAATTTAACCTA 57.300 29.630 33.43 33.43 46.34 3.08
672 694 8.207545 TGTAGGCAAATTTGACAAATTTAACCT 58.792 29.630 34.66 34.66 46.34 3.50
673 695 8.371770 TGTAGGCAAATTTGACAAATTTAACC 57.628 30.769 29.34 29.35 46.34 2.85
678 700 8.667463 GCATATTGTAGGCAAATTTGACAAATT 58.333 29.630 25.59 18.41 42.62 1.82
679 701 7.823310 TGCATATTGTAGGCAAATTTGACAAAT 59.177 29.630 25.59 21.13 43.06 2.32
680 702 7.157347 TGCATATTGTAGGCAAATTTGACAAA 58.843 30.769 25.59 16.29 43.06 2.83
681 703 6.695429 TGCATATTGTAGGCAAATTTGACAA 58.305 32.000 25.59 22.34 43.06 3.18
682 704 6.278172 TGCATATTGTAGGCAAATTTGACA 57.722 33.333 25.59 15.67 43.06 3.58
692 714 0.109597 GCGCCATGCATATTGTAGGC 60.110 55.000 12.32 12.32 45.45 3.93
747 769 5.659048 GCAGTAGTATCTTTTGCGCTTAT 57.341 39.130 9.73 0.00 0.00 1.73
770 799 5.010617 GGAGTCCTGGTCTATTCTTCAGATC 59.989 48.000 0.41 0.00 0.00 2.75
840 879 2.686405 GGCGGGTTCCTTTTATAGGTTG 59.314 50.000 0.00 0.00 45.03 3.77
866 905 0.178921 TGGTTGCTGGAGGAGAGACT 60.179 55.000 0.00 0.00 0.00 3.24
904 960 1.502640 GAGCTCTGCGTACGTCTGT 59.497 57.895 17.90 0.00 0.00 3.41
935 995 2.320587 GGTGAGCGAGTGTTGCAGG 61.321 63.158 0.00 0.00 33.85 4.85
957 1017 0.466189 CGGTGGGAAATGGAGGGATG 60.466 60.000 0.00 0.00 0.00 3.51
972 1032 1.372499 CGACGCCATATACCCGGTG 60.372 63.158 0.00 0.00 38.79 4.94
973 1033 1.799258 GACGACGCCATATACCCGGT 61.799 60.000 0.00 0.00 0.00 5.28
974 1034 1.080974 GACGACGCCATATACCCGG 60.081 63.158 0.00 0.00 0.00 5.73
975 1035 1.441515 CGACGACGCCATATACCCG 60.442 63.158 0.00 0.00 0.00 5.28
976 1036 1.080974 CCGACGACGCCATATACCC 60.081 63.158 0.64 0.00 38.29 3.69
977 1037 1.731969 GCCGACGACGCCATATACC 60.732 63.158 0.64 0.00 38.29 2.73
1005 1082 1.224592 GGTCATCATCACCGCCCTT 59.775 57.895 0.00 0.00 0.00 3.95
1015 1092 0.179702 ATCAGCAGCACGGTCATCAT 59.820 50.000 0.00 0.00 0.00 2.45
1185 1268 3.943691 CCGGGTGGGTGTTTCGGA 61.944 66.667 0.00 0.00 42.94 4.55
1461 1597 9.137459 TGTCAAACCCAAGTAATGAAAGAATAA 57.863 29.630 0.00 0.00 0.00 1.40
1482 1619 6.561737 TTTGTAGAAAGTGTGTTGTGTCAA 57.438 33.333 0.00 0.00 0.00 3.18
1531 4378 7.574967 CGGCTTACTCAAATTATGTTTTCAGGT 60.575 37.037 0.00 0.00 0.00 4.00
1602 4451 3.630013 AGCTGAGTTGCCCGCTCA 61.630 61.111 0.00 0.00 40.28 4.26
1611 4460 2.164865 CTGAGACGGCCAGCTGAGTT 62.165 60.000 17.39 0.00 0.00 3.01
1642 4496 2.037144 CCGCCCTACACCTACACTTAT 58.963 52.381 0.00 0.00 0.00 1.73
1752 4653 2.282180 GTGGATGTTGGCCCGTGT 60.282 61.111 0.00 0.00 0.00 4.49
1819 4720 0.257039 CAGATCTTTCCCCACCCCAG 59.743 60.000 0.00 0.00 0.00 4.45
1838 4739 3.078097 GAGCAACCTTCTTCCTTCCTTC 58.922 50.000 0.00 0.00 0.00 3.46
1839 4740 2.443255 TGAGCAACCTTCTTCCTTCCTT 59.557 45.455 0.00 0.00 0.00 3.36
1853 4759 2.193536 AACCCAACGGCTGAGCAAC 61.194 57.895 6.82 0.00 0.00 4.17
1861 4767 0.953960 CACTAGTCCAACCCAACGGC 60.954 60.000 0.00 0.00 0.00 5.68
1870 4776 3.134574 ACCGATTTTGCACTAGTCCAA 57.865 42.857 0.00 0.00 0.00 3.53
1872 4778 3.998341 TGTAACCGATTTTGCACTAGTCC 59.002 43.478 0.00 0.00 0.00 3.85
1873 4779 4.689345 AGTGTAACCGATTTTGCACTAGTC 59.311 41.667 11.45 0.00 46.69 2.59
1879 4789 4.902443 TTGAAGTGTAACCGATTTTGCA 57.098 36.364 0.00 0.00 37.80 4.08
1938 4848 3.505464 CGTGAGAAAGGACTAACGGAT 57.495 47.619 0.00 0.00 40.04 4.18
1957 4867 1.394917 CTCGAGCCACAAGAATTTCCG 59.605 52.381 0.00 0.00 0.00 4.30
2068 4978 2.830704 AAGGCCGCGACCGTTCTTAG 62.831 60.000 8.23 0.00 33.69 2.18
2081 4991 0.462759 GGTCTCCATGAAGAAGGCCG 60.463 60.000 0.00 0.00 0.00 6.13
2101 5011 6.596869 AATTGATCAGGAAAGGGGAGATAA 57.403 37.500 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.