Multiple sequence alignment - TraesCS4B01G279100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G279100 chr4B 100.000 2610 0 0 1 2610 562420500 562417891 0.000000e+00 4820
1 TraesCS4B01G279100 chr4B 85.969 841 114 4 1772 2610 338974275 338973437 0.000000e+00 896
2 TraesCS4B01G279100 chr4B 82.418 910 71 41 904 1754 562361493 562360614 0.000000e+00 712
3 TraesCS4B01G279100 chr4B 86.154 325 31 8 1147 1468 562436330 562436017 3.220000e-89 339
4 TraesCS4B01G279100 chr4A 93.810 840 47 4 1772 2610 727841255 727840420 0.000000e+00 1258
5 TraesCS4B01G279100 chr4A 86.513 1001 75 28 817 1770 17256236 17257223 0.000000e+00 1046
6 TraesCS4B01G279100 chr4A 87.485 831 66 25 928 1737 17032397 17033210 0.000000e+00 924
7 TraesCS4B01G279100 chr4A 85.481 551 74 6 227 774 17029931 17030478 1.050000e-158 569
8 TraesCS4B01G279100 chr4A 89.851 404 29 6 1120 1522 17253374 17253766 2.320000e-140 508
9 TraesCS4B01G279100 chr4A 86.411 287 25 8 1147 1429 17018293 17018569 4.220000e-78 302
10 TraesCS4B01G279100 chr4A 78.947 361 46 17 1004 1347 16993637 16993290 4.370000e-53 219
11 TraesCS4B01G279100 chr7B 93.230 842 53 3 1771 2610 531223515 531224354 0.000000e+00 1236
12 TraesCS4B01G279100 chr3B 92.747 841 58 2 1771 2610 498430623 498429785 0.000000e+00 1212
13 TraesCS4B01G279100 chr3B 92.381 840 61 2 1772 2610 761835866 761836703 0.000000e+00 1194
14 TraesCS4B01G279100 chr1B 92.747 841 58 2 1771 2610 100055342 100054504 0.000000e+00 1212
15 TraesCS4B01G279100 chr1B 88.981 844 89 4 1770 2610 286779262 286778420 0.000000e+00 1040
16 TraesCS4B01G279100 chr1B 89.007 846 84 9 1771 2610 48750226 48751068 0.000000e+00 1038
17 TraesCS4B01G279100 chr1B 97.872 94 2 0 1 94 670549475 670549382 2.080000e-36 163
18 TraesCS4B01G279100 chr5B 93.522 741 45 2 1869 2608 411094749 411095487 0.000000e+00 1099
19 TraesCS4B01G279100 chr4D 89.865 888 39 20 812 1652 449854746 449853863 0.000000e+00 1094
20 TraesCS4B01G279100 chr4D 85.143 976 86 31 818 1770 449739725 449738786 0.000000e+00 944
21 TraesCS4B01G279100 chr4D 92.377 551 40 1 227 775 449858034 449857484 0.000000e+00 784
22 TraesCS4B01G279100 chr4D 85.846 325 32 8 1147 1468 449876085 449875772 1.500000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G279100 chr4B 562417891 562420500 2609 True 4820.0 4820 100.000 1 2610 1 chr4B.!!$R3 2609
1 TraesCS4B01G279100 chr4B 338973437 338974275 838 True 896.0 896 85.969 1772 2610 1 chr4B.!!$R1 838
2 TraesCS4B01G279100 chr4B 562360614 562361493 879 True 712.0 712 82.418 904 1754 1 chr4B.!!$R2 850
3 TraesCS4B01G279100 chr4A 727840420 727841255 835 True 1258.0 1258 93.810 1772 2610 1 chr4A.!!$R2 838
4 TraesCS4B01G279100 chr4A 17253374 17257223 3849 False 777.0 1046 88.182 817 1770 2 chr4A.!!$F3 953
5 TraesCS4B01G279100 chr4A 17029931 17033210 3279 False 746.5 924 86.483 227 1737 2 chr4A.!!$F2 1510
6 TraesCS4B01G279100 chr7B 531223515 531224354 839 False 1236.0 1236 93.230 1771 2610 1 chr7B.!!$F1 839
7 TraesCS4B01G279100 chr3B 498429785 498430623 838 True 1212.0 1212 92.747 1771 2610 1 chr3B.!!$R1 839
8 TraesCS4B01G279100 chr3B 761835866 761836703 837 False 1194.0 1194 92.381 1772 2610 1 chr3B.!!$F1 838
9 TraesCS4B01G279100 chr1B 100054504 100055342 838 True 1212.0 1212 92.747 1771 2610 1 chr1B.!!$R1 839
10 TraesCS4B01G279100 chr1B 286778420 286779262 842 True 1040.0 1040 88.981 1770 2610 1 chr1B.!!$R2 840
11 TraesCS4B01G279100 chr1B 48750226 48751068 842 False 1038.0 1038 89.007 1771 2610 1 chr1B.!!$F1 839
12 TraesCS4B01G279100 chr5B 411094749 411095487 738 False 1099.0 1099 93.522 1869 2608 1 chr5B.!!$F1 739
13 TraesCS4B01G279100 chr4D 449738786 449739725 939 True 944.0 944 85.143 818 1770 1 chr4D.!!$R1 952
14 TraesCS4B01G279100 chr4D 449853863 449858034 4171 True 939.0 1094 91.121 227 1652 2 chr4D.!!$R3 1425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.034616 CGAGGAAGATGCAGGGGATC 59.965 60.0 0.00 0.00 0.00 3.36 F
192 193 0.035458 GCTGACATAGGGCGGCTTAT 59.965 55.0 6.84 8.64 33.67 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 5384 0.112412 AGGACGCCATGGAAACCTTT 59.888 50.000 18.4 0.0 0.0 3.11 R
1999 6302 1.005924 CCTGGATAGTGGCCCTTTTGT 59.994 52.381 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.110006 GGGAGGCGAGGAAGATGC 59.890 66.667 0.00 0.00 0.00 3.91
19 20 1.227497 GGAGGCGAGGAAGATGCAG 60.227 63.158 0.00 0.00 0.00 4.41
20 21 1.227497 GAGGCGAGGAAGATGCAGG 60.227 63.158 0.00 0.00 0.00 4.85
21 22 2.203126 GGCGAGGAAGATGCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
22 23 2.203126 GCGAGGAAGATGCAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
23 24 2.735772 GCGAGGAAGATGCAGGGGA 61.736 63.158 0.00 0.00 0.00 4.81
24 25 2.049627 GCGAGGAAGATGCAGGGGAT 62.050 60.000 0.00 0.00 0.00 3.85
25 26 0.034616 CGAGGAAGATGCAGGGGATC 59.965 60.000 0.00 0.00 0.00 3.36
27 28 0.399091 AGGAAGATGCAGGGGATCGA 60.399 55.000 0.00 0.00 0.00 3.59
29 30 1.043816 GAAGATGCAGGGGATCGAGA 58.956 55.000 0.00 0.00 0.00 4.04
30 31 1.000731 GAAGATGCAGGGGATCGAGAG 59.999 57.143 0.00 0.00 0.00 3.20
31 32 0.105760 AGATGCAGGGGATCGAGAGT 60.106 55.000 0.00 0.00 0.00 3.24
33 34 1.406065 ATGCAGGGGATCGAGAGTGG 61.406 60.000 0.00 0.00 0.00 4.00
34 35 1.758514 GCAGGGGATCGAGAGTGGA 60.759 63.158 0.00 0.00 0.00 4.02
35 36 1.118356 GCAGGGGATCGAGAGTGGAT 61.118 60.000 0.00 0.00 0.00 3.41
36 37 0.965439 CAGGGGATCGAGAGTGGATC 59.035 60.000 0.00 0.00 39.63 3.36
37 38 0.538516 AGGGGATCGAGAGTGGATCG 60.539 60.000 0.00 0.00 40.93 3.69
42 43 2.099143 TCGAGAGTGGATCGACAGC 58.901 57.895 10.69 1.91 43.79 4.40
43 44 1.297967 CGAGAGTGGATCGACAGCG 60.298 63.158 10.69 6.63 42.76 5.18
44 45 1.587613 GAGAGTGGATCGACAGCGC 60.588 63.158 10.69 0.00 37.46 5.92
45 46 2.583593 GAGTGGATCGACAGCGCC 60.584 66.667 10.69 0.00 37.46 6.53
46 47 4.498520 AGTGGATCGACAGCGCCG 62.499 66.667 10.69 0.00 37.46 6.46
84 85 4.644230 CTGCAAGCGGGCGCAAAA 62.644 61.111 10.83 0.00 44.88 2.44
85 86 3.919973 CTGCAAGCGGGCGCAAAAT 62.920 57.895 10.83 0.00 44.88 1.82
87 88 2.506881 CAAGCGGGCGCAAAATCC 60.507 61.111 10.83 0.00 44.88 3.01
88 89 2.676471 AAGCGGGCGCAAAATCCT 60.676 55.556 10.83 0.00 44.88 3.24
92 93 2.791927 GGGCGCAAAATCCTCGTC 59.208 61.111 10.83 0.00 0.00 4.20
93 94 1.745489 GGGCGCAAAATCCTCGTCT 60.745 57.895 10.83 0.00 0.00 4.18
94 95 1.425428 GGCGCAAAATCCTCGTCTG 59.575 57.895 10.83 0.00 0.00 3.51
96 97 1.298859 GCGCAAAATCCTCGTCTGGT 61.299 55.000 0.30 0.00 0.00 4.00
97 98 0.443869 CGCAAAATCCTCGTCTGGTG 59.556 55.000 0.00 0.00 0.00 4.17
98 99 1.523758 GCAAAATCCTCGTCTGGTGT 58.476 50.000 0.00 0.00 0.00 4.16
100 101 1.197721 CAAAATCCTCGTCTGGTGTGC 59.802 52.381 0.00 0.00 0.00 4.57
101 102 0.687354 AAATCCTCGTCTGGTGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
104 105 2.029518 CTCGTCTGGTGTGCTGCA 59.970 61.111 0.00 0.00 0.00 4.41
105 106 2.025969 CTCGTCTGGTGTGCTGCAG 61.026 63.158 10.11 10.11 0.00 4.41
106 107 3.720193 CGTCTGGTGTGCTGCAGC 61.720 66.667 31.89 31.89 45.22 5.25
107 108 3.360340 GTCTGGTGTGCTGCAGCC 61.360 66.667 34.64 25.13 44.44 4.85
108 109 4.994471 TCTGGTGTGCTGCAGCCG 62.994 66.667 34.64 15.90 44.44 5.52
130 131 4.295119 ACTGACGAAGCGCCCGTT 62.295 61.111 23.06 3.36 40.67 4.44
131 132 3.479269 CTGACGAAGCGCCCGTTC 61.479 66.667 23.06 16.78 40.67 3.95
141 142 2.364448 GCCCGTTCCCCTCTCTCT 60.364 66.667 0.00 0.00 0.00 3.10
142 143 2.428085 GCCCGTTCCCCTCTCTCTC 61.428 68.421 0.00 0.00 0.00 3.20
144 145 1.758906 CCGTTCCCCTCTCTCTCCC 60.759 68.421 0.00 0.00 0.00 4.30
145 146 1.758906 CGTTCCCCTCTCTCTCCCC 60.759 68.421 0.00 0.00 0.00 4.81
146 147 1.383386 GTTCCCCTCTCTCTCCCCC 60.383 68.421 0.00 0.00 0.00 5.40
147 148 1.550374 TTCCCCTCTCTCTCCCCCT 60.550 63.158 0.00 0.00 0.00 4.79
148 149 1.162951 TTCCCCTCTCTCTCCCCCTT 61.163 60.000 0.00 0.00 0.00 3.95
149 150 1.162951 TCCCCTCTCTCTCCCCCTTT 61.163 60.000 0.00 0.00 0.00 3.11
150 151 0.692756 CCCCTCTCTCTCCCCCTTTC 60.693 65.000 0.00 0.00 0.00 2.62
151 152 0.341609 CCCTCTCTCTCCCCCTTTCT 59.658 60.000 0.00 0.00 0.00 2.52
152 153 1.691163 CCCTCTCTCTCCCCCTTTCTC 60.691 61.905 0.00 0.00 0.00 2.87
153 154 1.290732 CCTCTCTCTCCCCCTTTCTCT 59.709 57.143 0.00 0.00 0.00 3.10
155 156 1.289530 TCTCTCTCCCCCTTTCTCTCC 59.710 57.143 0.00 0.00 0.00 3.71
156 157 0.340208 TCTCTCCCCCTTTCTCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
157 158 0.692756 CTCTCCCCCTTTCTCTCCCC 60.693 65.000 0.00 0.00 0.00 4.81
158 159 1.162951 TCTCCCCCTTTCTCTCCCCT 61.163 60.000 0.00 0.00 0.00 4.79
159 160 0.253394 CTCCCCCTTTCTCTCCCCTT 60.253 60.000 0.00 0.00 0.00 3.95
160 161 0.253207 TCCCCCTTTCTCTCCCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
161 162 0.550147 CCCCCTTTCTCTCCCCTTCA 60.550 60.000 0.00 0.00 0.00 3.02
162 163 0.915364 CCCCTTTCTCTCCCCTTCAG 59.085 60.000 0.00 0.00 0.00 3.02
163 164 0.254462 CCCTTTCTCTCCCCTTCAGC 59.746 60.000 0.00 0.00 0.00 4.26
164 165 1.284313 CCTTTCTCTCCCCTTCAGCT 58.716 55.000 0.00 0.00 0.00 4.24
165 166 1.065564 CCTTTCTCTCCCCTTCAGCTG 60.066 57.143 7.63 7.63 0.00 4.24
166 167 1.627834 CTTTCTCTCCCCTTCAGCTGT 59.372 52.381 14.67 0.00 0.00 4.40
167 168 0.979665 TTCTCTCCCCTTCAGCTGTG 59.020 55.000 14.67 8.01 0.00 3.66
168 169 0.115152 TCTCTCCCCTTCAGCTGTGA 59.885 55.000 14.67 2.90 0.00 3.58
169 170 1.202330 CTCTCCCCTTCAGCTGTGAT 58.798 55.000 14.67 0.00 30.85 3.06
170 171 1.558756 CTCTCCCCTTCAGCTGTGATT 59.441 52.381 14.67 0.00 30.85 2.57
171 172 1.988107 TCTCCCCTTCAGCTGTGATTT 59.012 47.619 14.67 0.00 30.85 2.17
174 175 0.529378 CCCTTCAGCTGTGATTTGGC 59.471 55.000 14.67 0.00 30.85 4.52
175 176 1.542492 CCTTCAGCTGTGATTTGGCT 58.458 50.000 14.67 0.00 36.70 4.75
179 180 3.731716 AGCTGTGATTTGGCTGACA 57.268 47.368 0.00 0.00 34.82 3.58
180 181 2.211250 AGCTGTGATTTGGCTGACAT 57.789 45.000 0.00 0.00 34.82 3.06
181 182 3.354948 AGCTGTGATTTGGCTGACATA 57.645 42.857 0.00 0.00 34.82 2.29
184 185 2.947652 CTGTGATTTGGCTGACATAGGG 59.052 50.000 0.00 0.00 0.00 3.53
185 186 1.678101 GTGATTTGGCTGACATAGGGC 59.322 52.381 0.00 0.00 0.00 5.19
187 188 0.466189 ATTTGGCTGACATAGGGCGG 60.466 55.000 0.00 0.00 0.00 6.13
188 189 3.697439 TTGGCTGACATAGGGCGGC 62.697 63.158 5.18 5.18 35.68 6.53
189 190 3.866582 GGCTGACATAGGGCGGCT 61.867 66.667 14.76 0.00 36.64 5.52
191 192 1.445942 GCTGACATAGGGCGGCTTA 59.554 57.895 6.84 5.98 33.67 3.09
192 193 0.035458 GCTGACATAGGGCGGCTTAT 59.965 55.000 6.84 8.64 33.67 1.73
193 194 1.275291 GCTGACATAGGGCGGCTTATA 59.725 52.381 13.35 2.59 33.67 0.98
195 196 1.275291 TGACATAGGGCGGCTTATAGC 59.725 52.381 13.35 8.95 41.46 2.97
196 197 1.550976 GACATAGGGCGGCTTATAGCT 59.449 52.381 13.35 0.72 41.99 3.32
197 198 2.758979 GACATAGGGCGGCTTATAGCTA 59.241 50.000 13.35 0.00 41.99 3.32
198 199 3.170717 ACATAGGGCGGCTTATAGCTAA 58.829 45.455 13.35 0.00 41.99 3.09
199 200 3.056035 ACATAGGGCGGCTTATAGCTAAC 60.056 47.826 13.35 0.00 41.99 2.34
200 201 1.718280 AGGGCGGCTTATAGCTAACT 58.282 50.000 9.56 0.00 41.99 2.24
203 204 2.610727 GGGCGGCTTATAGCTAACTGAG 60.611 54.545 9.56 0.00 41.99 3.35
204 205 2.036089 GGCGGCTTATAGCTAACTGAGT 59.964 50.000 0.00 0.00 41.99 3.41
205 206 3.310246 GCGGCTTATAGCTAACTGAGTC 58.690 50.000 0.00 0.00 41.99 3.36
206 207 3.243434 GCGGCTTATAGCTAACTGAGTCA 60.243 47.826 0.00 0.00 41.99 3.41
207 208 4.541779 CGGCTTATAGCTAACTGAGTCAG 58.458 47.826 18.83 18.83 41.99 3.51
208 209 4.276183 CGGCTTATAGCTAACTGAGTCAGA 59.724 45.833 26.86 4.17 41.99 3.27
209 210 5.048364 CGGCTTATAGCTAACTGAGTCAGAT 60.048 44.000 26.86 17.46 41.99 2.90
210 211 6.386654 GGCTTATAGCTAACTGAGTCAGATC 58.613 44.000 26.86 11.44 41.99 2.75
211 212 6.208599 GGCTTATAGCTAACTGAGTCAGATCT 59.791 42.308 26.86 17.17 41.99 2.75
212 213 7.392113 GGCTTATAGCTAACTGAGTCAGATCTA 59.608 40.741 26.86 18.51 41.99 1.98
213 214 8.956426 GCTTATAGCTAACTGAGTCAGATCTAT 58.044 37.037 26.86 22.64 38.45 1.98
223 224 8.704849 ACTGAGTCAGATCTATTATACTTGCT 57.295 34.615 26.86 0.00 35.18 3.91
224 225 8.792633 ACTGAGTCAGATCTATTATACTTGCTC 58.207 37.037 26.86 0.00 35.18 4.26
225 226 8.932434 TGAGTCAGATCTATTATACTTGCTCT 57.068 34.615 0.00 0.00 0.00 4.09
249 250 2.676471 GCCCACAAACCTCGCCAT 60.676 61.111 0.00 0.00 0.00 4.40
273 274 5.390387 ACCACAATAGGGTTTTTCTTGCTA 58.610 37.500 0.00 0.00 34.10 3.49
393 395 4.828072 AACTACACTTCATCTTCCTCCC 57.172 45.455 0.00 0.00 0.00 4.30
488 490 1.444933 ATTGAAGGGGGTCAGTGTGA 58.555 50.000 0.00 0.00 0.00 3.58
602 606 0.460987 GATGGGAGTTGGTCGCTCTG 60.461 60.000 0.00 0.00 38.94 3.35
622 626 1.134818 GCACGACTACCCATCATGACA 60.135 52.381 0.00 0.00 0.00 3.58
626 630 2.103094 CGACTACCCATCATGACATGGT 59.897 50.000 15.37 14.07 41.84 3.55
756 760 2.738846 CACCTCATTCCTTTGTCGTGAG 59.261 50.000 0.00 0.00 36.83 3.51
760 764 1.734465 CATTCCTTTGTCGTGAGCTCC 59.266 52.381 12.15 1.40 0.00 4.70
775 779 0.470341 GCTCCCTCTTCCCATACACC 59.530 60.000 0.00 0.00 0.00 4.16
776 780 1.132500 CTCCCTCTTCCCATACACCC 58.868 60.000 0.00 0.00 0.00 4.61
777 781 0.689745 TCCCTCTTCCCATACACCCG 60.690 60.000 0.00 0.00 0.00 5.28
779 783 0.689745 CCTCTTCCCATACACCCGGA 60.690 60.000 0.73 0.00 0.00 5.14
781 785 2.605257 CTCTTCCCATACACCCGGATA 58.395 52.381 0.73 0.00 0.00 2.59
782 786 2.969950 CTCTTCCCATACACCCGGATAA 59.030 50.000 0.73 0.00 0.00 1.75
783 787 3.386063 TCTTCCCATACACCCGGATAAA 58.614 45.455 0.73 0.00 0.00 1.40
787 791 2.290705 CCCATACACCCGGATAAATCCC 60.291 54.545 0.73 0.00 44.24 3.85
789 793 3.841845 CCATACACCCGGATAAATCCCTA 59.158 47.826 0.73 0.00 44.24 3.53
792 796 3.390819 ACACCCGGATAAATCCCTAGTT 58.609 45.455 0.73 0.00 44.24 2.24
793 797 4.559726 ACACCCGGATAAATCCCTAGTTA 58.440 43.478 0.73 0.00 44.24 2.24
794 798 4.346127 ACACCCGGATAAATCCCTAGTTAC 59.654 45.833 0.73 0.00 44.24 2.50
795 799 4.591924 CACCCGGATAAATCCCTAGTTACT 59.408 45.833 0.73 0.00 44.24 2.24
801 4921 7.270047 CGGATAAATCCCTAGTTACTGTCAAA 58.730 38.462 3.39 0.00 44.24 2.69
1065 5279 2.244651 GCCATCCATCGTACGCACC 61.245 63.158 11.24 0.00 0.00 5.01
1072 5286 0.317938 CATCGTACGCACCTAGCTCC 60.318 60.000 11.24 0.00 42.61 4.70
1073 5287 1.453762 ATCGTACGCACCTAGCTCCC 61.454 60.000 11.24 0.00 42.61 4.30
1106 5345 0.245539 TTGCTCCGTACTGTAGGTGC 59.754 55.000 16.48 16.48 44.57 5.01
1116 5363 2.166829 ACTGTAGGTGCACTCAGAGAG 58.833 52.381 28.81 17.74 35.52 3.20
1136 5384 7.065803 CAGAGAGTCAAAAGTTAAACAACCAGA 59.934 37.037 0.00 0.00 0.00 3.86
1140 5388 7.320399 AGTCAAAAGTTAAACAACCAGAAAGG 58.680 34.615 0.00 0.00 45.67 3.11
1154 5402 0.526211 GAAAGGTTTCCATGGCGTCC 59.474 55.000 6.96 8.76 0.00 4.79
1157 5405 1.002624 GGTTTCCATGGCGTCCTCA 60.003 57.895 6.96 0.00 0.00 3.86
1158 5406 1.305930 GGTTTCCATGGCGTCCTCAC 61.306 60.000 6.96 0.00 0.00 3.51
1422 5670 2.392933 CGGAGCTCGACTAGTCAATC 57.607 55.000 22.37 12.94 42.43 2.67
1491 5758 5.584649 TCTCTTGTTCGTCTTGTTTGATTGT 59.415 36.000 0.00 0.00 0.00 2.71
1493 5760 6.255215 TCTTGTTCGTCTTGTTTGATTGTTC 58.745 36.000 0.00 0.00 0.00 3.18
1494 5761 5.811399 TGTTCGTCTTGTTTGATTGTTCT 57.189 34.783 0.00 0.00 0.00 3.01
1497 5764 6.526325 TGTTCGTCTTGTTTGATTGTTCTTTG 59.474 34.615 0.00 0.00 0.00 2.77
1498 5765 6.189677 TCGTCTTGTTTGATTGTTCTTTGT 57.810 33.333 0.00 0.00 0.00 2.83
1499 5766 6.616947 TCGTCTTGTTTGATTGTTCTTTGTT 58.383 32.000 0.00 0.00 0.00 2.83
1500 5767 6.745450 TCGTCTTGTTTGATTGTTCTTTGTTC 59.255 34.615 0.00 0.00 0.00 3.18
1501 5768 6.526325 CGTCTTGTTTGATTGTTCTTTGTTCA 59.474 34.615 0.00 0.00 0.00 3.18
1591 5868 7.871853 TGGAAGCTGTTCAAATTTAGTTAGTC 58.128 34.615 0.00 0.00 33.93 2.59
1594 5871 9.387123 GAAGCTGTTCAAATTTAGTTAGTCTTG 57.613 33.333 0.00 0.00 32.36 3.02
1661 5947 7.753580 GTGACCACTAACCAAATTGTATAAAGC 59.246 37.037 0.00 0.00 0.00 3.51
1723 6024 7.215789 TGTTGCACTTGATTTGGAATATTTGT 58.784 30.769 0.00 0.00 0.00 2.83
1748 6049 6.179906 AGGAGAGAAACAGACTCATTTTCA 57.820 37.500 0.00 0.00 36.91 2.69
1891 6192 3.240134 GAGGCTCAAGACCGGCACA 62.240 63.158 10.25 0.00 0.00 4.57
1911 6213 0.464036 AACACAGAGTTCACGGCAGA 59.536 50.000 0.00 0.00 34.74 4.26
2056 6359 0.679960 GCTCCCTGGCCAAAACGTAT 60.680 55.000 7.01 0.00 0.00 3.06
2145 6448 1.372128 GCTGCAGGAAAAGGTTGCG 60.372 57.895 17.12 0.00 40.62 4.85
2169 6472 6.570957 CGTTTATAGATGATGTTAGCCGGGTA 60.571 42.308 9.87 9.87 0.00 3.69
2300 6603 0.244994 GACGATGGCCGCTAGATCAT 59.755 55.000 0.00 0.00 43.32 2.45
2338 6641 0.397941 AGGAAGTGTTAGCTGCAGCA 59.602 50.000 38.24 22.31 45.16 4.41
2487 6790 0.380378 GGCAGTCTGTTGCGAAACAA 59.620 50.000 10.87 0.00 45.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.110006 GCATCTTCCTCGCCTCCC 59.890 66.667 0.00 0.00 0.00 4.30
1 2 1.227497 CTGCATCTTCCTCGCCTCC 60.227 63.158 0.00 0.00 0.00 4.30
2 3 1.227497 CCTGCATCTTCCTCGCCTC 60.227 63.158 0.00 0.00 0.00 4.70
5 6 2.049627 ATCCCCTGCATCTTCCTCGC 62.050 60.000 0.00 0.00 0.00 5.03
6 7 0.034616 GATCCCCTGCATCTTCCTCG 59.965 60.000 0.00 0.00 0.00 4.63
7 8 0.034616 CGATCCCCTGCATCTTCCTC 59.965 60.000 0.00 0.00 0.00 3.71
8 9 0.399091 TCGATCCCCTGCATCTTCCT 60.399 55.000 0.00 0.00 0.00 3.36
9 10 0.034616 CTCGATCCCCTGCATCTTCC 59.965 60.000 0.00 0.00 0.00 3.46
10 11 1.000731 CTCTCGATCCCCTGCATCTTC 59.999 57.143 0.00 0.00 0.00 2.87
11 12 1.047002 CTCTCGATCCCCTGCATCTT 58.953 55.000 0.00 0.00 0.00 2.40
14 15 1.406065 CCACTCTCGATCCCCTGCAT 61.406 60.000 0.00 0.00 0.00 3.96
15 16 2.060383 CCACTCTCGATCCCCTGCA 61.060 63.158 0.00 0.00 0.00 4.41
16 17 1.118356 ATCCACTCTCGATCCCCTGC 61.118 60.000 0.00 0.00 0.00 4.85
17 18 0.965439 GATCCACTCTCGATCCCCTG 59.035 60.000 0.00 0.00 31.69 4.45
19 20 0.537600 TCGATCCACTCTCGATCCCC 60.538 60.000 0.00 0.00 40.01 4.81
20 21 0.594110 GTCGATCCACTCTCGATCCC 59.406 60.000 0.00 0.00 45.81 3.85
21 22 1.265635 CTGTCGATCCACTCTCGATCC 59.734 57.143 0.00 0.00 45.81 3.36
22 23 1.334599 GCTGTCGATCCACTCTCGATC 60.335 57.143 0.00 0.00 45.81 3.69
23 24 0.665835 GCTGTCGATCCACTCTCGAT 59.334 55.000 0.00 0.00 45.81 3.59
24 25 1.706287 CGCTGTCGATCCACTCTCGA 61.706 60.000 0.00 0.00 42.44 4.04
25 26 1.297967 CGCTGTCGATCCACTCTCG 60.298 63.158 0.00 0.00 38.10 4.04
27 28 2.492090 GCGCTGTCGATCCACTCT 59.508 61.111 0.00 0.00 38.10 3.24
29 30 4.498520 CGGCGCTGTCGATCCACT 62.499 66.667 8.45 0.00 38.10 4.00
67 68 3.919973 ATTTTGCGCCCGCTTGCAG 62.920 57.895 14.13 0.00 42.89 4.41
68 69 3.912820 GATTTTGCGCCCGCTTGCA 62.913 57.895 14.13 0.00 42.51 4.08
69 70 3.181290 GATTTTGCGCCCGCTTGC 61.181 61.111 14.13 0.00 42.51 4.01
70 71 2.506881 GGATTTTGCGCCCGCTTG 60.507 61.111 14.13 0.00 42.51 4.01
71 72 2.676471 AGGATTTTGCGCCCGCTT 60.676 55.556 14.13 0.00 42.51 4.68
72 73 3.134127 GAGGATTTTGCGCCCGCT 61.134 61.111 14.13 0.00 42.51 5.52
73 74 4.536687 CGAGGATTTTGCGCCCGC 62.537 66.667 4.18 5.60 42.35 6.13
74 75 3.095898 GACGAGGATTTTGCGCCCG 62.096 63.158 4.18 0.00 0.00 6.13
76 77 1.425428 CAGACGAGGATTTTGCGCC 59.575 57.895 4.18 0.00 0.00 6.53
77 78 1.298859 ACCAGACGAGGATTTTGCGC 61.299 55.000 0.00 0.00 0.00 6.09
79 80 1.197721 CACACCAGACGAGGATTTTGC 59.802 52.381 0.00 0.00 0.00 3.68
80 81 1.197721 GCACACCAGACGAGGATTTTG 59.802 52.381 0.00 0.00 0.00 2.44
81 82 1.072331 AGCACACCAGACGAGGATTTT 59.928 47.619 0.00 0.00 0.00 1.82
83 84 0.036952 CAGCACACCAGACGAGGATT 60.037 55.000 0.00 0.00 0.00 3.01
84 85 1.593787 CAGCACACCAGACGAGGAT 59.406 57.895 0.00 0.00 0.00 3.24
85 86 3.051210 CAGCACACCAGACGAGGA 58.949 61.111 0.00 0.00 0.00 3.71
87 88 2.025969 CTGCAGCACACCAGACGAG 61.026 63.158 0.00 0.00 0.00 4.18
88 89 2.029518 CTGCAGCACACCAGACGA 59.970 61.111 0.00 0.00 0.00 4.20
112 113 4.719369 ACGGGCGCTTCGTCAGTC 62.719 66.667 19.87 0.00 34.58 3.51
113 114 4.295119 AACGGGCGCTTCGTCAGT 62.295 61.111 23.99 10.58 42.00 3.41
114 115 3.479269 GAACGGGCGCTTCGTCAG 61.479 66.667 23.99 4.71 40.18 3.51
126 127 1.758906 GGGAGAGAGAGGGGAACGG 60.759 68.421 0.00 0.00 0.00 4.44
127 128 1.758906 GGGGAGAGAGAGGGGAACG 60.759 68.421 0.00 0.00 0.00 3.95
128 129 1.383386 GGGGGAGAGAGAGGGGAAC 60.383 68.421 0.00 0.00 0.00 3.62
130 131 1.162951 AAAGGGGGAGAGAGAGGGGA 61.163 60.000 0.00 0.00 0.00 4.81
131 132 0.692756 GAAAGGGGGAGAGAGAGGGG 60.693 65.000 0.00 0.00 0.00 4.79
133 134 1.290732 AGAGAAAGGGGGAGAGAGAGG 59.709 57.143 0.00 0.00 0.00 3.69
134 135 2.666317 GAGAGAAAGGGGGAGAGAGAG 58.334 57.143 0.00 0.00 0.00 3.20
136 137 1.691163 GGGAGAGAAAGGGGGAGAGAG 60.691 61.905 0.00 0.00 0.00 3.20
137 138 0.340208 GGGAGAGAAAGGGGGAGAGA 59.660 60.000 0.00 0.00 0.00 3.10
138 139 0.692756 GGGGAGAGAAAGGGGGAGAG 60.693 65.000 0.00 0.00 0.00 3.20
139 140 1.162951 AGGGGAGAGAAAGGGGGAGA 61.163 60.000 0.00 0.00 0.00 3.71
141 142 0.253207 GAAGGGGAGAGAAAGGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
142 143 0.550147 TGAAGGGGAGAGAAAGGGGG 60.550 60.000 0.00 0.00 0.00 5.40
144 145 0.254462 GCTGAAGGGGAGAGAAAGGG 59.746 60.000 0.00 0.00 0.00 3.95
145 146 1.065564 CAGCTGAAGGGGAGAGAAAGG 60.066 57.143 8.42 0.00 0.00 3.11
146 147 1.627834 ACAGCTGAAGGGGAGAGAAAG 59.372 52.381 23.35 0.00 0.00 2.62
147 148 1.349026 CACAGCTGAAGGGGAGAGAAA 59.651 52.381 23.35 0.00 0.00 2.52
148 149 0.979665 CACAGCTGAAGGGGAGAGAA 59.020 55.000 23.35 0.00 0.00 2.87
149 150 0.115152 TCACAGCTGAAGGGGAGAGA 59.885 55.000 23.35 0.97 0.00 3.10
150 151 1.202330 ATCACAGCTGAAGGGGAGAG 58.798 55.000 23.35 0.00 0.00 3.20
151 152 1.661463 AATCACAGCTGAAGGGGAGA 58.339 50.000 23.35 6.56 0.00 3.71
152 153 2.089980 CAAATCACAGCTGAAGGGGAG 58.910 52.381 23.35 0.36 0.00 4.30
153 154 1.272092 CCAAATCACAGCTGAAGGGGA 60.272 52.381 23.35 9.77 0.00 4.81
155 156 0.529378 GCCAAATCACAGCTGAAGGG 59.471 55.000 23.35 13.20 0.00 3.95
156 157 1.542492 AGCCAAATCACAGCTGAAGG 58.458 50.000 23.35 12.82 34.99 3.46
161 162 2.211250 ATGTCAGCCAAATCACAGCT 57.789 45.000 0.00 0.00 37.32 4.24
162 163 2.357009 CCTATGTCAGCCAAATCACAGC 59.643 50.000 0.00 0.00 0.00 4.40
163 164 2.947652 CCCTATGTCAGCCAAATCACAG 59.052 50.000 0.00 0.00 0.00 3.66
164 165 2.945440 GCCCTATGTCAGCCAAATCACA 60.945 50.000 0.00 0.00 0.00 3.58
165 166 1.678101 GCCCTATGTCAGCCAAATCAC 59.322 52.381 0.00 0.00 0.00 3.06
166 167 1.746861 CGCCCTATGTCAGCCAAATCA 60.747 52.381 0.00 0.00 0.00 2.57
167 168 0.947244 CGCCCTATGTCAGCCAAATC 59.053 55.000 0.00 0.00 0.00 2.17
168 169 0.466189 CCGCCCTATGTCAGCCAAAT 60.466 55.000 0.00 0.00 0.00 2.32
169 170 1.077787 CCGCCCTATGTCAGCCAAA 60.078 57.895 0.00 0.00 0.00 3.28
170 171 2.589540 CCGCCCTATGTCAGCCAA 59.410 61.111 0.00 0.00 0.00 4.52
171 172 4.175337 GCCGCCCTATGTCAGCCA 62.175 66.667 0.00 0.00 0.00 4.75
174 175 2.675317 GCTATAAGCCGCCCTATGTCAG 60.675 54.545 0.00 0.00 34.48 3.51
175 176 1.275291 GCTATAAGCCGCCCTATGTCA 59.725 52.381 0.00 0.00 34.48 3.58
176 177 1.550976 AGCTATAAGCCGCCCTATGTC 59.449 52.381 0.00 0.00 43.77 3.06
177 178 1.645710 AGCTATAAGCCGCCCTATGT 58.354 50.000 0.00 0.00 43.77 2.29
178 179 3.195825 AGTTAGCTATAAGCCGCCCTATG 59.804 47.826 0.00 0.00 43.77 2.23
179 180 3.195825 CAGTTAGCTATAAGCCGCCCTAT 59.804 47.826 0.00 0.00 43.77 2.57
180 181 2.561419 CAGTTAGCTATAAGCCGCCCTA 59.439 50.000 0.00 0.00 43.77 3.53
181 182 1.344763 CAGTTAGCTATAAGCCGCCCT 59.655 52.381 0.00 0.00 43.77 5.19
184 185 3.243434 TGACTCAGTTAGCTATAAGCCGC 60.243 47.826 0.00 0.00 43.77 6.53
185 186 4.276183 TCTGACTCAGTTAGCTATAAGCCG 59.724 45.833 5.94 0.00 35.82 5.52
187 188 7.214467 AGATCTGACTCAGTTAGCTATAAGC 57.786 40.000 5.94 0.00 35.60 3.09
197 198 9.142014 AGCAAGTATAATAGATCTGACTCAGTT 57.858 33.333 5.18 0.00 32.61 3.16
198 199 8.704849 AGCAAGTATAATAGATCTGACTCAGT 57.295 34.615 5.18 0.00 32.61 3.41
199 200 9.013229 AGAGCAAGTATAATAGATCTGACTCAG 57.987 37.037 5.18 0.00 0.00 3.35
200 201 8.932434 AGAGCAAGTATAATAGATCTGACTCA 57.068 34.615 5.18 0.00 0.00 3.41
203 204 8.026607 GTGGAGAGCAAGTATAATAGATCTGAC 58.973 40.741 5.18 0.00 0.00 3.51
204 205 7.947332 AGTGGAGAGCAAGTATAATAGATCTGA 59.053 37.037 5.18 0.00 0.00 3.27
205 206 8.121305 AGTGGAGAGCAAGTATAATAGATCTG 57.879 38.462 5.18 0.00 0.00 2.90
206 207 7.120579 CGAGTGGAGAGCAAGTATAATAGATCT 59.879 40.741 0.00 0.00 0.00 2.75
207 208 7.247728 CGAGTGGAGAGCAAGTATAATAGATC 58.752 42.308 0.00 0.00 0.00 2.75
208 209 6.349777 GCGAGTGGAGAGCAAGTATAATAGAT 60.350 42.308 0.00 0.00 0.00 1.98
209 210 5.048643 GCGAGTGGAGAGCAAGTATAATAGA 60.049 44.000 0.00 0.00 0.00 1.98
210 211 5.157781 GCGAGTGGAGAGCAAGTATAATAG 58.842 45.833 0.00 0.00 0.00 1.73
211 212 4.022242 GGCGAGTGGAGAGCAAGTATAATA 60.022 45.833 0.00 0.00 0.00 0.98
212 213 3.243907 GGCGAGTGGAGAGCAAGTATAAT 60.244 47.826 0.00 0.00 0.00 1.28
213 214 2.100916 GGCGAGTGGAGAGCAAGTATAA 59.899 50.000 0.00 0.00 0.00 0.98
214 215 1.681793 GGCGAGTGGAGAGCAAGTATA 59.318 52.381 0.00 0.00 0.00 1.47
215 216 0.461961 GGCGAGTGGAGAGCAAGTAT 59.538 55.000 0.00 0.00 0.00 2.12
216 217 1.605058 GGGCGAGTGGAGAGCAAGTA 61.605 60.000 0.00 0.00 0.00 2.24
217 218 2.659610 GGCGAGTGGAGAGCAAGT 59.340 61.111 0.00 0.00 0.00 3.16
218 219 2.125350 GGGCGAGTGGAGAGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
219 220 2.922503 TGGGCGAGTGGAGAGCAA 60.923 61.111 0.00 0.00 0.00 3.91
220 221 3.695606 GTGGGCGAGTGGAGAGCA 61.696 66.667 0.00 0.00 0.00 4.26
221 222 2.731691 TTTGTGGGCGAGTGGAGAGC 62.732 60.000 0.00 0.00 0.00 4.09
222 223 0.951040 GTTTGTGGGCGAGTGGAGAG 60.951 60.000 0.00 0.00 0.00 3.20
223 224 1.070786 GTTTGTGGGCGAGTGGAGA 59.929 57.895 0.00 0.00 0.00 3.71
224 225 1.966451 GGTTTGTGGGCGAGTGGAG 60.966 63.158 0.00 0.00 0.00 3.86
225 226 2.112297 GGTTTGTGGGCGAGTGGA 59.888 61.111 0.00 0.00 0.00 4.02
249 250 5.390387 AGCAAGAAAAACCCTATTGTGGTA 58.610 37.500 0.00 0.00 34.15 3.25
273 274 2.900838 GCATGGAGCAGAGCGCAT 60.901 61.111 11.47 0.00 46.13 4.73
315 316 4.374843 TTGGAATTTCAAGCGATGATGG 57.625 40.909 0.00 0.00 38.03 3.51
393 395 2.771763 AAGCTCACGCAAGAGACCGG 62.772 60.000 0.00 0.00 37.87 5.28
471 473 0.984230 GATCACACTGACCCCCTTCA 59.016 55.000 0.00 0.00 0.00 3.02
474 476 1.201429 GGTGATCACACTGACCCCCT 61.201 60.000 26.47 0.00 45.32 4.79
528 532 2.093306 TAGTGTGGGAGTTTGCGATG 57.907 50.000 0.00 0.00 0.00 3.84
584 588 1.599047 CAGAGCGACCAACTCCCAT 59.401 57.895 0.00 0.00 34.56 4.00
602 606 1.134818 TGTCATGATGGGTAGTCGTGC 60.135 52.381 0.00 0.00 33.61 5.34
622 626 3.371917 CCATGTGTAACCTGATCCACCAT 60.372 47.826 0.00 0.00 34.07 3.55
626 630 4.474651 AGAATCCATGTGTAACCTGATCCA 59.525 41.667 0.00 0.00 34.07 3.41
632 636 3.356290 GGCAAGAATCCATGTGTAACCT 58.644 45.455 0.00 0.00 34.36 3.50
756 760 0.470341 GGTGTATGGGAAGAGGGAGC 59.530 60.000 0.00 0.00 0.00 4.70
760 764 0.689745 TCCGGGTGTATGGGAAGAGG 60.690 60.000 0.00 0.00 0.00 3.69
777 781 9.457436 TTTTTGACAGTAACTAGGGATTTATCC 57.543 33.333 0.00 0.00 46.41 2.59
864 5052 1.770294 GTAGAGCCAGCTGTAGGACT 58.230 55.000 13.81 7.11 0.00 3.85
1065 5279 2.042464 TGTTGCAGATAGGGGAGCTAG 58.958 52.381 0.00 0.00 0.00 3.42
1098 5320 2.163509 GACTCTCTGAGTGCACCTACA 58.836 52.381 14.63 10.78 43.53 2.74
1106 5345 7.539712 TGTTTAACTTTTGACTCTCTGAGTG 57.460 36.000 4.85 4.83 43.53 3.51
1116 5363 7.520119 CCTTTCTGGTTGTTTAACTTTTGAC 57.480 36.000 0.00 0.00 36.99 3.18
1136 5384 0.112412 AGGACGCCATGGAAACCTTT 59.888 50.000 18.40 0.00 0.00 3.11
1140 5388 1.305930 GGTGAGGACGCCATGGAAAC 61.306 60.000 18.40 4.88 45.14 2.78
1145 5393 2.509336 GTCGGTGAGGACGCCATG 60.509 66.667 0.00 0.00 46.01 3.66
1422 5670 1.513373 GACACGCACATGCATGCTG 60.513 57.895 26.53 22.03 43.80 4.41
1439 5690 4.298332 TCTATCTACGCATGTACGTACGA 58.702 43.478 24.41 10.02 46.19 3.43
1491 5758 8.700051 TGAAGGAACCAATTAATGAACAAAGAA 58.300 29.630 0.00 0.00 0.00 2.52
1493 5760 9.492973 AATGAAGGAACCAATTAATGAACAAAG 57.507 29.630 0.00 0.00 0.00 2.77
1494 5761 9.487790 GAATGAAGGAACCAATTAATGAACAAA 57.512 29.630 0.00 0.00 0.00 2.83
1497 5764 9.710900 AAAGAATGAAGGAACCAATTAATGAAC 57.289 29.630 0.00 0.00 0.00 3.18
1498 5765 9.927668 GAAAGAATGAAGGAACCAATTAATGAA 57.072 29.630 0.00 0.00 0.00 2.57
1499 5766 9.087871 TGAAAGAATGAAGGAACCAATTAATGA 57.912 29.630 0.00 0.00 0.00 2.57
1500 5767 9.709495 TTGAAAGAATGAAGGAACCAATTAATG 57.291 29.630 0.00 0.00 0.00 1.90
1501 5768 9.933723 CTTGAAAGAATGAAGGAACCAATTAAT 57.066 29.630 0.00 0.00 0.00 1.40
1504 5771 7.147672 ACACTTGAAAGAATGAAGGAACCAATT 60.148 33.333 0.00 0.00 0.00 2.32
1591 5868 8.649841 CACTTTATTGCAAATTCATGTACCAAG 58.350 33.333 1.71 0.00 0.00 3.61
1594 5871 7.096551 ACCACTTTATTGCAAATTCATGTACC 58.903 34.615 1.71 0.00 0.00 3.34
1675 5965 9.911788 AACAATCTTCTACTCATGGTTATGAAT 57.088 29.630 0.00 0.00 42.48 2.57
1691 5988 5.302568 TCCAAATCAAGTGCAACAATCTTCT 59.697 36.000 0.00 0.00 41.43 2.85
1723 6024 7.657761 GTGAAAATGAGTCTGTTTCTCTCCTTA 59.342 37.037 15.59 0.00 33.37 2.69
1748 6049 2.290514 GGTAGGTTAGCCTTTTTCGGGT 60.291 50.000 2.41 0.00 44.18 5.28
1891 6192 1.134521 TCTGCCGTGAACTCTGTGTTT 60.135 47.619 0.00 0.00 39.30 2.83
1911 6213 1.206371 CTTCGTTGGTCCGGTCCTAAT 59.794 52.381 18.85 0.00 0.00 1.73
1997 6300 1.339631 TGGATAGTGGCCCTTTTGTCG 60.340 52.381 0.00 0.00 0.00 4.35
1999 6302 1.005924 CCTGGATAGTGGCCCTTTTGT 59.994 52.381 0.00 0.00 0.00 2.83
2056 6359 4.409218 GACCGTCTGCGCCACGTA 62.409 66.667 22.79 0.00 35.39 3.57
2110 6413 2.425592 CAGTGGAGTCCGTTGGCA 59.574 61.111 4.30 0.00 0.00 4.92
2145 6448 5.548406 ACCCGGCTAACATCATCTATAAAC 58.452 41.667 0.00 0.00 0.00 2.01
2300 6603 2.975799 GAACCCGCGTTCTGCCAA 60.976 61.111 4.92 0.00 44.29 4.52
2487 6790 5.869649 AATTAAGGTGTTCTTTTGGCAGT 57.130 34.783 0.00 0.00 36.93 4.40
2545 6848 3.003173 AGCCAGGCCTGCTTCGTA 61.003 61.111 28.39 0.00 34.87 3.43
2548 6851 2.438075 CAGAGCCAGGCCTGCTTC 60.438 66.667 28.39 24.03 39.69 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.