Multiple sequence alignment - TraesCS4B01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G278900 chr4B 100.000 6035 0 0 1 6035 562348013 562354047 0.000000e+00 11145.0
1 TraesCS4B01G278900 chr4B 100.000 32 0 0 709 740 86056594 86056563 6.530000e-05 60.2
2 TraesCS4B01G278900 chr4B 100.000 31 0 0 709 739 600238529 600238499 2.350000e-04 58.4
3 TraesCS4B01G278900 chr4B 100.000 29 0 0 709 737 260072448 260072476 3.000000e-03 54.7
4 TraesCS4B01G278900 chr4A 94.416 3761 133 29 733 4471 17268114 17264409 0.000000e+00 5710.0
5 TraesCS4B01G278900 chr4A 87.853 1416 99 29 4653 6034 17264392 17263016 0.000000e+00 1594.0
6 TraesCS4B01G278900 chr4A 89.419 671 49 9 1 668 649838540 649837889 0.000000e+00 826.0
7 TraesCS4B01G278900 chr4D 96.217 2961 90 12 1522 4471 449726003 449728952 0.000000e+00 4828.0
8 TraesCS4B01G278900 chr4D 91.408 1420 73 21 4653 6035 449728969 449730376 0.000000e+00 1901.0
9 TraesCS4B01G278900 chr4D 94.889 763 23 5 733 1487 449725133 449725887 0.000000e+00 1179.0
10 TraesCS4B01G278900 chr4D 89.071 183 15 3 4472 4649 385734011 385733829 7.870000e-54 222.0
11 TraesCS4B01G278900 chr3B 90.363 716 45 6 1 708 27047100 27047799 0.000000e+00 918.0
12 TraesCS4B01G278900 chr3B 90.896 670 40 7 1 668 92667490 92668140 0.000000e+00 880.0
13 TraesCS4B01G278900 chr3B 86.575 730 66 18 1 708 771174008 771174727 0.000000e+00 776.0
14 TraesCS4B01G278900 chr3B 86.951 728 45 12 1 708 739946352 739945655 0.000000e+00 773.0
15 TraesCS4B01G278900 chr3B 87.736 636 47 8 87 713 651029223 651028610 0.000000e+00 713.0
16 TraesCS4B01G278900 chr3B 92.827 474 32 1 1 472 479498329 479497856 0.000000e+00 686.0
17 TraesCS4B01G278900 chr3B 92.500 40 1 2 709 746 114142287 114142326 8.450000e-04 56.5
18 TraesCS4B01G278900 chr7B 89.291 719 52 7 1 712 679572155 679571455 0.000000e+00 878.0
19 TraesCS4B01G278900 chr7B 88.392 715 46 6 1 708 718844413 718845097 0.000000e+00 826.0
20 TraesCS4B01G278900 chr5B 89.341 713 47 5 1 708 678097951 678098639 0.000000e+00 869.0
21 TraesCS4B01G278900 chr5B 88.615 729 37 9 1 708 712469488 712468785 0.000000e+00 845.0
22 TraesCS4B01G278900 chr5B 87.827 649 54 6 68 708 37978833 37979464 0.000000e+00 737.0
23 TraesCS4B01G278900 chr5B 87.891 512 37 5 206 709 522876571 522877065 4.060000e-161 579.0
24 TraesCS4B01G278900 chr5B 88.525 183 17 4 4470 4648 275235451 275235269 1.020000e-52 219.0
25 TraesCS4B01G278900 chr2B 89.140 663 40 13 2 661 728930330 728929697 0.000000e+00 797.0
26 TraesCS4B01G278900 chr2B 87.326 718 46 10 1 712 647430653 647429975 0.000000e+00 780.0
27 TraesCS4B01G278900 chr2B 89.559 431 31 7 1 423 72158983 72159407 8.900000e-148 534.0
28 TraesCS4B01G278900 chr2B 89.011 182 18 2 4469 4650 705884697 705884518 2.190000e-54 224.0
29 TraesCS4B01G278900 chr1B 88.978 372 19 5 347 713 44590547 44590193 2.000000e-119 440.0
30 TraesCS4B01G278900 chr1B 94.444 36 2 0 709 744 458685518 458685483 8.450000e-04 56.5
31 TraesCS4B01G278900 chr6A 90.608 181 13 1 4472 4648 503763178 503762998 2.810000e-58 237.0
32 TraesCS4B01G278900 chr3A 90.857 175 12 3 4471 4645 621322927 621323097 1.310000e-56 231.0
33 TraesCS4B01G278900 chr7A 88.144 194 17 5 4463 4650 175244691 175244498 6.090000e-55 226.0
34 TraesCS4B01G278900 chr7A 87.755 196 18 3 4461 4650 115736248 115736443 2.190000e-54 224.0
35 TraesCS4B01G278900 chr7A 85.507 207 21 6 4463 4662 539543839 539543635 2.200000e-49 207.0
36 TraesCS4B01G278900 chr2A 88.021 192 16 4 4457 4642 218122235 218122425 2.830000e-53 220.0
37 TraesCS4B01G278900 chr7D 87.629 194 17 6 4463 4650 173020020 173020212 1.020000e-52 219.0
38 TraesCS4B01G278900 chr7D 86.631 187 22 3 4463 4648 136863548 136863732 2.850000e-48 204.0
39 TraesCS4B01G278900 chr7D 86.243 189 23 3 4463 4650 75800857 75800671 1.030000e-47 202.0
40 TraesCS4B01G278900 chr6D 88.043 184 17 1 4472 4650 390481237 390481420 4.740000e-51 213.0
41 TraesCS4B01G278900 chr6D 88.268 179 16 5 4471 4644 305742912 305743090 6.130000e-50 209.0
42 TraesCS4B01G278900 chr6D 86.631 187 24 1 4459 4645 421769574 421769759 7.930000e-49 206.0
43 TraesCS4B01G278900 chr6D 87.222 180 18 5 4471 4650 457685537 457685363 3.690000e-47 200.0
44 TraesCS4B01G278900 chr6D 86.813 182 19 5 4468 4645 18958840 18958660 1.330000e-46 198.0
45 TraesCS4B01G278900 chr6D 97.059 34 1 0 709 742 58896267 58896234 2.350000e-04 58.4
46 TraesCS4B01G278900 chr5A 89.205 176 12 6 4471 4640 382336305 382336479 4.740000e-51 213.0
47 TraesCS4B01G278900 chr1D 86.842 190 15 5 4461 4645 465126600 465126416 2.850000e-48 204.0
48 TraesCS4B01G278900 chr1D 86.740 181 21 3 4470 4650 246416533 246416356 1.330000e-46 198.0
49 TraesCS4B01G278900 chr1D 85.405 185 22 4 4466 4645 443741661 443741845 2.870000e-43 187.0
50 TraesCS4B01G278900 chr1D 87.730 163 15 5 4472 4634 106848739 106848896 1.030000e-42 185.0
51 TraesCS4B01G278900 chr1D 83.673 196 22 6 4457 4645 493673837 493673645 6.220000e-40 176.0
52 TraesCS4B01G278900 chr1D 83.957 187 24 5 4468 4649 314506377 314506192 2.240000e-39 174.0
53 TraesCS4B01G278900 chr1D 84.699 183 17 7 4470 4643 339571568 339571388 8.040000e-39 172.0
54 TraesCS4B01G278900 chr1A 86.885 183 21 2 4470 4650 581543893 581544074 1.030000e-47 202.0
55 TraesCS4B01G278900 chrUn 86.702 188 15 9 4470 4650 30689422 30689238 3.690000e-47 200.0
56 TraesCS4B01G278900 chrUn 86.413 184 20 3 4472 4650 360043103 360042920 4.770000e-46 196.0
57 TraesCS4B01G278900 chrUn 83.333 186 24 4 4471 4650 32482780 32482596 1.350000e-36 165.0
58 TraesCS4B01G278900 chrUn 83.243 185 24 4 4471 4650 13837988 13838170 4.840000e-36 163.0
59 TraesCS4B01G278900 chrUn 90.598 117 10 1 4467 4583 231619632 231619517 2.910000e-33 154.0
60 TraesCS4B01G278900 chrUn 81.383 188 31 3 4463 4646 75776431 75776244 3.770000e-32 150.0
61 TraesCS4B01G278900 chrUn 81.720 186 25 5 4471 4649 41497280 41497463 4.870000e-31 147.0
62 TraesCS4B01G278900 chrUn 81.481 189 26 6 4468 4650 74039451 74039636 4.870000e-31 147.0
63 TraesCS4B01G278900 chrUn 82.941 170 22 7 4469 4631 318851237 318851406 4.870000e-31 147.0
64 TraesCS4B01G278900 chrUn 82.386 176 24 4 4473 4643 338593320 338593493 4.870000e-31 147.0
65 TraesCS4B01G278900 chrUn 80.319 188 33 3 4463 4646 75738767 75738580 8.160000e-29 139.0
66 TraesCS4B01G278900 chrUn 100.000 32 0 0 709 740 2118803 2118772 6.530000e-05 60.2
67 TraesCS4B01G278900 chr5D 85.714 196 19 7 4461 4650 456746692 456746884 1.330000e-46 198.0
68 TraesCS4B01G278900 chr5D 97.059 34 1 0 707 740 63104687 63104654 2.350000e-04 58.4
69 TraesCS4B01G278900 chr6B 94.444 36 0 2 706 739 695148685 695148720 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G278900 chr4B 562348013 562354047 6034 False 11145 11145 100.000000 1 6035 1 chr4B.!!$F2 6034
1 TraesCS4B01G278900 chr4A 17263016 17268114 5098 True 3652 5710 91.134500 733 6034 2 chr4A.!!$R2 5301
2 TraesCS4B01G278900 chr4A 649837889 649838540 651 True 826 826 89.419000 1 668 1 chr4A.!!$R1 667
3 TraesCS4B01G278900 chr4D 449725133 449730376 5243 False 2636 4828 94.171333 733 6035 3 chr4D.!!$F1 5302
4 TraesCS4B01G278900 chr3B 27047100 27047799 699 False 918 918 90.363000 1 708 1 chr3B.!!$F1 707
5 TraesCS4B01G278900 chr3B 92667490 92668140 650 False 880 880 90.896000 1 668 1 chr3B.!!$F2 667
6 TraesCS4B01G278900 chr3B 771174008 771174727 719 False 776 776 86.575000 1 708 1 chr3B.!!$F4 707
7 TraesCS4B01G278900 chr3B 739945655 739946352 697 True 773 773 86.951000 1 708 1 chr3B.!!$R3 707
8 TraesCS4B01G278900 chr3B 651028610 651029223 613 True 713 713 87.736000 87 713 1 chr3B.!!$R2 626
9 TraesCS4B01G278900 chr7B 679571455 679572155 700 True 878 878 89.291000 1 712 1 chr7B.!!$R1 711
10 TraesCS4B01G278900 chr7B 718844413 718845097 684 False 826 826 88.392000 1 708 1 chr7B.!!$F1 707
11 TraesCS4B01G278900 chr5B 678097951 678098639 688 False 869 869 89.341000 1 708 1 chr5B.!!$F3 707
12 TraesCS4B01G278900 chr5B 712468785 712469488 703 True 845 845 88.615000 1 708 1 chr5B.!!$R2 707
13 TraesCS4B01G278900 chr5B 37978833 37979464 631 False 737 737 87.827000 68 708 1 chr5B.!!$F1 640
14 TraesCS4B01G278900 chr2B 728929697 728930330 633 True 797 797 89.140000 2 661 1 chr2B.!!$R3 659
15 TraesCS4B01G278900 chr2B 647429975 647430653 678 True 780 780 87.326000 1 712 1 chr2B.!!$R1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 810 0.028637 GCTGGAGATGCTTTTAGCGC 59.971 55.000 0.00 0.00 46.26 5.92 F
818 913 0.249398 AGTACGCTTTCGGCAGGAAT 59.751 50.000 0.00 0.00 41.91 3.01 F
1512 1626 0.748450 CGATTGGGCCATTTCTGCAT 59.252 50.000 7.26 0.00 0.00 3.96 F
1648 1857 1.132500 AGGGTTAGAGGCTACATGGC 58.868 55.000 0.00 0.00 42.15 4.40 F
2941 3160 2.356535 GGTTTGATGAGGAGGTGAGCAT 60.357 50.000 0.00 0.00 0.00 3.79 F
4170 4400 2.104792 TGTACCAGCTGCTGTTTTCTCT 59.895 45.455 26.41 4.23 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1856 0.038618 GAAACAAACATCCCCACCGC 60.039 55.000 0.0 0.0 0.00 5.68 R
2011 2230 1.093159 CTGCACCTCTTGATTCCAGC 58.907 55.000 0.0 0.0 0.00 4.85 R
2971 3190 0.541392 ACAAGGCACCGCATCTATCA 59.459 50.000 0.0 0.0 0.00 2.15 R
3314 3533 1.538876 CCCAACCTCCTCCAGTCCA 60.539 63.158 0.0 0.0 0.00 4.02 R
4242 4472 0.249911 GAGCGACCTCCTTTGTGTGT 60.250 55.000 0.0 0.0 31.68 3.72 R
5877 6135 0.322098 TGGGGACGCTATTTGGTGTG 60.322 55.000 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 4.467084 GCCGGGATGTTCGCCTGA 62.467 66.667 2.18 0.00 33.45 3.86
212 215 3.373226 CTCGTCTCCGGGGAAACA 58.627 61.111 5.00 0.00 33.95 2.83
216 219 1.812686 CGTCTCCGGGGAAACACTCA 61.813 60.000 5.00 0.00 0.00 3.41
230 233 1.306141 ACTCAGCCATCGGGGAGAA 60.306 57.895 0.00 0.00 40.01 2.87
253 271 0.915364 GTGGCTGGGGAGAAGAGATT 59.085 55.000 0.00 0.00 0.00 2.40
624 713 2.034999 AGCCGGCGAAAAATGGGA 59.965 55.556 23.20 0.00 0.00 4.37
713 808 0.659957 CGGCTGGAGATGCTTTTAGC 59.340 55.000 0.00 0.00 42.82 3.09
714 809 0.659957 GGCTGGAGATGCTTTTAGCG 59.340 55.000 0.00 0.00 46.26 4.26
715 810 0.028637 GCTGGAGATGCTTTTAGCGC 59.971 55.000 0.00 0.00 46.26 5.92
716 811 0.302890 CTGGAGATGCTTTTAGCGCG 59.697 55.000 0.00 0.00 46.26 6.86
717 812 1.089481 TGGAGATGCTTTTAGCGCGG 61.089 55.000 8.83 0.00 46.26 6.46
718 813 1.010685 GAGATGCTTTTAGCGCGGC 60.011 57.895 8.83 1.17 46.26 6.53
719 814 1.432270 GAGATGCTTTTAGCGCGGCT 61.432 55.000 8.83 8.38 46.26 5.52
720 815 1.297893 GATGCTTTTAGCGCGGCTG 60.298 57.895 8.83 0.00 46.26 4.85
721 816 1.982073 GATGCTTTTAGCGCGGCTGT 61.982 55.000 8.83 0.00 46.26 4.40
722 817 1.586154 ATGCTTTTAGCGCGGCTGTT 61.586 50.000 8.83 0.00 46.26 3.16
723 818 1.797537 GCTTTTAGCGCGGCTGTTG 60.798 57.895 8.83 0.08 40.10 3.33
724 819 1.154225 CTTTTAGCGCGGCTGTTGG 60.154 57.895 8.83 0.00 40.10 3.77
725 820 1.573829 CTTTTAGCGCGGCTGTTGGA 61.574 55.000 8.83 0.00 40.10 3.53
726 821 1.573829 TTTTAGCGCGGCTGTTGGAG 61.574 55.000 8.83 0.00 40.10 3.86
727 822 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
728 823 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
729 824 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
730 825 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
731 826 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
736 831 2.284190 GGCTGTTGGAGATGCTCTTAC 58.716 52.381 0.00 0.00 0.00 2.34
751 846 2.507322 CTTACAACATTGCGCGCGGT 62.507 55.000 33.06 21.21 0.00 5.68
777 872 3.868757 TGATCGTGCACTTTAGCTACT 57.131 42.857 16.19 0.00 34.99 2.57
787 882 2.913617 ACTTTAGCTACTCCCCTTTGCT 59.086 45.455 0.00 0.00 37.72 3.91
788 883 3.055021 ACTTTAGCTACTCCCCTTTGCTC 60.055 47.826 0.00 0.00 35.47 4.26
818 913 0.249398 AGTACGCTTTCGGCAGGAAT 59.751 50.000 0.00 0.00 41.91 3.01
845 940 2.642139 ATTCCGAAGTACGCTTTCGA 57.358 45.000 15.09 0.00 41.07 3.71
938 1033 3.717294 CCCCTCCCCACACTTCCG 61.717 72.222 0.00 0.00 0.00 4.30
939 1034 2.606519 CCCTCCCCACACTTCCGA 60.607 66.667 0.00 0.00 0.00 4.55
940 1035 2.660064 CCCTCCCCACACTTCCGAG 61.660 68.421 0.00 0.00 0.00 4.63
941 1036 1.609501 CCTCCCCACACTTCCGAGA 60.610 63.158 0.00 0.00 0.00 4.04
988 1083 2.754658 GCTCGGACCTCGGAGGAA 60.755 66.667 30.13 11.24 41.76 3.36
989 1084 2.776913 GCTCGGACCTCGGAGGAAG 61.777 68.421 30.13 19.71 41.76 3.46
1392 1500 1.294659 CTCCTGCTTCTGTGGTTCGC 61.295 60.000 0.00 0.00 0.00 4.70
1395 1503 1.608025 CCTGCTTCTGTGGTTCGCTTA 60.608 52.381 0.00 0.00 0.00 3.09
1398 1506 1.666189 GCTTCTGTGGTTCGCTTATCC 59.334 52.381 0.00 0.00 0.00 2.59
1403 1511 1.813753 TGGTTCGCTTATCCGCAGC 60.814 57.895 0.00 0.00 0.00 5.25
1487 1601 4.127171 ACAAGCGACTAGTGTTGAATGTT 58.873 39.130 0.00 0.00 29.46 2.71
1488 1602 4.211374 ACAAGCGACTAGTGTTGAATGTTC 59.789 41.667 0.00 0.00 29.46 3.18
1491 1605 3.741344 GCGACTAGTGTTGAATGTTCTGT 59.259 43.478 0.00 0.00 0.00 3.41
1504 1618 1.001020 TTCTGTGCGATTGGGCCAT 60.001 52.632 7.26 0.00 0.00 4.40
1512 1626 0.748450 CGATTGGGCCATTTCTGCAT 59.252 50.000 7.26 0.00 0.00 3.96
1520 1634 2.497273 GGCCATTTCTGCATTGGTTAGT 59.503 45.455 0.00 0.00 32.90 2.24
1532 1741 5.293324 TGCATTGGTTAGTTAGATTGCTACG 59.707 40.000 0.00 0.00 0.00 3.51
1647 1856 5.367945 TTTAAGGGTTAGAGGCTACATGG 57.632 43.478 0.00 0.00 0.00 3.66
1648 1857 1.132500 AGGGTTAGAGGCTACATGGC 58.868 55.000 0.00 0.00 42.15 4.40
1888 2106 7.014988 TGCACCATCATAATGTAGCCTATTA 57.985 36.000 0.00 0.00 32.68 0.98
1889 2107 7.457561 TGCACCATCATAATGTAGCCTATTAA 58.542 34.615 0.00 0.00 32.68 1.40
1963 2181 9.211556 GCGCTTGATAATTCTTAACTTTACTTC 57.788 33.333 0.00 0.00 0.00 3.01
2191 2410 3.997021 CGATTGAGGACTGTTTAGCACTT 59.003 43.478 0.00 0.00 0.00 3.16
2237 2456 7.170320 GCCTTCATAATTTGCATATCCTTGTTG 59.830 37.037 0.00 0.00 0.00 3.33
2429 2648 7.884877 GGATGGACATATGATACTGATCCAAAA 59.115 37.037 10.38 0.00 38.22 2.44
2941 3160 2.356535 GGTTTGATGAGGAGGTGAGCAT 60.357 50.000 0.00 0.00 0.00 3.79
3212 3431 4.702131 ACCGAACACGAAGGTTAGTAGTAT 59.298 41.667 0.00 0.00 33.96 2.12
3407 3626 5.105997 CCTTCAAGTTCCTCTGGCTTTTATG 60.106 44.000 0.00 0.00 0.00 1.90
3408 3627 4.985538 TCAAGTTCCTCTGGCTTTTATGT 58.014 39.130 0.00 0.00 0.00 2.29
3410 3629 5.833131 TCAAGTTCCTCTGGCTTTTATGTTT 59.167 36.000 0.00 0.00 0.00 2.83
3559 3779 2.225091 TGATGGAAGGTGGAGCATTTGT 60.225 45.455 0.00 0.00 0.00 2.83
3740 3968 5.023533 TGATGATAGTTTACAGGACCAGC 57.976 43.478 0.00 0.00 0.00 4.85
3750 3978 6.775629 AGTTTACAGGACCAGCTTTGATTTAA 59.224 34.615 0.00 0.00 0.00 1.52
3827 4055 3.068165 GGTAGCCTAAATGGTCAATTGGC 59.932 47.826 5.42 2.83 37.52 4.52
3830 4058 2.159057 GCCTAAATGGTCAATTGGCAGG 60.159 50.000 12.93 10.49 37.31 4.85
3935 4163 9.211485 CTCAGCCAAATGAACTAAAATTTGAAT 57.789 29.630 9.16 0.00 43.41 2.57
3938 4166 8.785946 AGCCAAATGAACTAAAATTTGAATTGG 58.214 29.630 9.16 0.00 43.41 3.16
3984 4212 7.727331 TCATTTGGTCAATTTGTTTGGATTC 57.273 32.000 0.00 0.00 35.92 2.52
4044 4272 7.715657 TGAAACTGAATTTGTACTGAAATGCT 58.284 30.769 0.00 0.00 0.00 3.79
4124 4354 6.311935 TGCTCTATTGAATGCTTTTTCATTGC 59.688 34.615 0.00 0.00 36.85 3.56
4170 4400 2.104792 TGTACCAGCTGCTGTTTTCTCT 59.895 45.455 26.41 4.23 0.00 3.10
4242 4472 9.999660 ATATATGGCATGCATCAAATTTGTTTA 57.000 25.926 21.36 0.00 0.00 2.01
4367 4597 6.323996 TCTTTCTGGATTACCTGATCGTGTAT 59.676 38.462 0.00 0.00 42.22 2.29
4471 4701 6.035843 CCAGGTGTGCATGATTTTGTATTAC 58.964 40.000 0.00 0.00 0.00 1.89
4472 4702 6.350027 CCAGGTGTGCATGATTTTGTATTACA 60.350 38.462 0.00 0.00 0.00 2.41
4473 4703 6.748658 CAGGTGTGCATGATTTTGTATTACAG 59.251 38.462 0.00 0.00 0.00 2.74
4476 4706 7.598493 GGTGTGCATGATTTTGTATTACAGTTT 59.402 33.333 0.00 0.00 0.00 2.66
4477 4707 8.977505 GTGTGCATGATTTTGTATTACAGTTTT 58.022 29.630 0.00 0.00 0.00 2.43
4478 4708 8.976471 TGTGCATGATTTTGTATTACAGTTTTG 58.024 29.630 0.00 0.00 0.00 2.44
4480 4710 7.871973 TGCATGATTTTGTATTACAGTTTTGCT 59.128 29.630 0.00 0.00 0.00 3.91
4481 4711 9.352784 GCATGATTTTGTATTACAGTTTTGCTA 57.647 29.630 0.00 0.00 0.00 3.49
4516 4746 3.953201 GCCCTAAGCATTGCACATC 57.047 52.632 11.91 0.00 42.97 3.06
4517 4747 1.396653 GCCCTAAGCATTGCACATCT 58.603 50.000 11.91 0.00 42.97 2.90
4518 4748 2.575532 GCCCTAAGCATTGCACATCTA 58.424 47.619 11.91 0.00 42.97 1.98
4519 4749 2.951642 GCCCTAAGCATTGCACATCTAA 59.048 45.455 11.91 0.00 42.97 2.10
4520 4750 3.004106 GCCCTAAGCATTGCACATCTAAG 59.996 47.826 11.91 0.00 42.97 2.18
4521 4751 4.202441 CCCTAAGCATTGCACATCTAAGT 58.798 43.478 11.91 0.00 0.00 2.24
4522 4752 4.274459 CCCTAAGCATTGCACATCTAAGTC 59.726 45.833 11.91 0.00 0.00 3.01
4523 4753 4.274459 CCTAAGCATTGCACATCTAAGTCC 59.726 45.833 11.91 0.00 0.00 3.85
4524 4754 3.641434 AGCATTGCACATCTAAGTCCT 57.359 42.857 11.91 0.00 0.00 3.85
4525 4755 4.760530 AGCATTGCACATCTAAGTCCTA 57.239 40.909 11.91 0.00 0.00 2.94
4526 4756 5.301835 AGCATTGCACATCTAAGTCCTAT 57.698 39.130 11.91 0.00 0.00 2.57
4527 4757 5.061853 AGCATTGCACATCTAAGTCCTATG 58.938 41.667 11.91 0.00 0.00 2.23
4528 4758 4.320057 GCATTGCACATCTAAGTCCTATGC 60.320 45.833 3.15 0.00 0.00 3.14
4529 4759 3.475566 TGCACATCTAAGTCCTATGCC 57.524 47.619 0.00 0.00 0.00 4.40
4530 4760 2.771372 TGCACATCTAAGTCCTATGCCA 59.229 45.455 0.00 0.00 0.00 4.92
4531 4761 3.392285 TGCACATCTAAGTCCTATGCCAT 59.608 43.478 0.00 0.00 0.00 4.40
4532 4762 4.141413 TGCACATCTAAGTCCTATGCCATT 60.141 41.667 0.00 0.00 0.00 3.16
4533 4763 4.214971 GCACATCTAAGTCCTATGCCATTG 59.785 45.833 0.00 0.00 0.00 2.82
4534 4764 5.614308 CACATCTAAGTCCTATGCCATTGA 58.386 41.667 0.00 0.00 0.00 2.57
4535 4765 6.236409 CACATCTAAGTCCTATGCCATTGAT 58.764 40.000 0.00 0.00 0.00 2.57
4536 4766 6.713903 CACATCTAAGTCCTATGCCATTGATT 59.286 38.462 0.00 0.00 0.00 2.57
4537 4767 7.230108 CACATCTAAGTCCTATGCCATTGATTT 59.770 37.037 0.00 0.00 0.00 2.17
4538 4768 7.781693 ACATCTAAGTCCTATGCCATTGATTTT 59.218 33.333 0.00 0.00 0.00 1.82
4539 4769 9.288576 CATCTAAGTCCTATGCCATTGATTTTA 57.711 33.333 0.00 0.00 0.00 1.52
4540 4770 8.677148 TCTAAGTCCTATGCCATTGATTTTAC 57.323 34.615 0.00 0.00 0.00 2.01
4541 4771 6.377327 AAGTCCTATGCCATTGATTTTACG 57.623 37.500 0.00 0.00 0.00 3.18
4542 4772 4.275936 AGTCCTATGCCATTGATTTTACGC 59.724 41.667 0.00 0.00 0.00 4.42
4543 4773 3.249799 TCCTATGCCATTGATTTTACGCG 59.750 43.478 3.53 3.53 0.00 6.01
4544 4774 3.249799 CCTATGCCATTGATTTTACGCGA 59.750 43.478 15.93 0.00 0.00 5.87
4545 4775 3.773860 ATGCCATTGATTTTACGCGAA 57.226 38.095 15.93 0.00 0.00 4.70
4546 4776 3.129852 TGCCATTGATTTTACGCGAAG 57.870 42.857 15.93 0.00 0.00 3.79
4547 4777 2.744741 TGCCATTGATTTTACGCGAAGA 59.255 40.909 15.93 0.00 0.00 2.87
4548 4778 3.376859 TGCCATTGATTTTACGCGAAGAT 59.623 39.130 15.93 3.39 0.00 2.40
4549 4779 4.142491 TGCCATTGATTTTACGCGAAGATT 60.142 37.500 15.93 0.00 0.00 2.40
4550 4780 4.437820 GCCATTGATTTTACGCGAAGATTC 59.562 41.667 15.93 4.55 0.00 2.52
4562 4792 3.729526 CGAAGATTCGTGCAGACATTT 57.270 42.857 6.81 0.00 45.09 2.32
4563 4793 4.070581 CGAAGATTCGTGCAGACATTTT 57.929 40.909 6.81 0.00 45.09 1.82
4564 4794 4.084507 CGAAGATTCGTGCAGACATTTTC 58.915 43.478 6.81 0.00 45.09 2.29
4565 4795 4.143030 CGAAGATTCGTGCAGACATTTTCT 60.143 41.667 6.81 0.00 45.09 2.52
4566 4796 5.615544 CGAAGATTCGTGCAGACATTTTCTT 60.616 40.000 6.81 0.00 45.09 2.52
4567 4797 5.695851 AGATTCGTGCAGACATTTTCTTT 57.304 34.783 0.00 0.00 28.96 2.52
4568 4798 6.076981 AGATTCGTGCAGACATTTTCTTTT 57.923 33.333 0.00 0.00 28.96 2.27
4569 4799 5.916883 AGATTCGTGCAGACATTTTCTTTTG 59.083 36.000 0.00 0.00 28.96 2.44
4570 4800 4.630894 TCGTGCAGACATTTTCTTTTGT 57.369 36.364 0.00 0.00 28.96 2.83
4571 4801 4.597079 TCGTGCAGACATTTTCTTTTGTC 58.403 39.130 0.00 0.00 42.03 3.18
4582 4812 9.794685 GACATTTTCTTTTGTCTCTTCTTCTTT 57.205 29.630 0.00 0.00 39.30 2.52
4583 4813 9.578439 ACATTTTCTTTTGTCTCTTCTTCTTTG 57.422 29.630 0.00 0.00 0.00 2.77
4584 4814 9.578439 CATTTTCTTTTGTCTCTTCTTCTTTGT 57.422 29.630 0.00 0.00 0.00 2.83
4587 4817 9.449719 TTTCTTTTGTCTCTTCTTCTTTGTAGT 57.550 29.630 0.00 0.00 0.00 2.73
4588 4818 9.449719 TTCTTTTGTCTCTTCTTCTTTGTAGTT 57.550 29.630 0.00 0.00 0.00 2.24
4589 4819 9.449719 TCTTTTGTCTCTTCTTCTTTGTAGTTT 57.550 29.630 0.00 0.00 0.00 2.66
4590 4820 9.495754 CTTTTGTCTCTTCTTCTTTGTAGTTTG 57.504 33.333 0.00 0.00 0.00 2.93
4591 4821 6.604735 TGTCTCTTCTTCTTTGTAGTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
4592 4822 6.349300 TGTCTCTTCTTCTTTGTAGTTTGCT 58.651 36.000 0.00 0.00 0.00 3.91
4593 4823 6.823689 TGTCTCTTCTTCTTTGTAGTTTGCTT 59.176 34.615 0.00 0.00 0.00 3.91
4594 4824 7.128976 GTCTCTTCTTCTTTGTAGTTTGCTTG 58.871 38.462 0.00 0.00 0.00 4.01
4595 4825 7.011482 GTCTCTTCTTCTTTGTAGTTTGCTTGA 59.989 37.037 0.00 0.00 0.00 3.02
4596 4826 7.225538 TCTCTTCTTCTTTGTAGTTTGCTTGAG 59.774 37.037 0.00 0.00 0.00 3.02
4597 4827 6.823689 TCTTCTTCTTTGTAGTTTGCTTGAGT 59.176 34.615 0.00 0.00 0.00 3.41
4598 4828 6.604735 TCTTCTTTGTAGTTTGCTTGAGTC 57.395 37.500 0.00 0.00 0.00 3.36
4599 4829 6.112734 TCTTCTTTGTAGTTTGCTTGAGTCA 58.887 36.000 0.00 0.00 0.00 3.41
4600 4830 5.734855 TCTTTGTAGTTTGCTTGAGTCAC 57.265 39.130 0.00 0.00 0.00 3.67
4601 4831 5.428253 TCTTTGTAGTTTGCTTGAGTCACT 58.572 37.500 0.00 0.00 0.00 3.41
4602 4832 5.880332 TCTTTGTAGTTTGCTTGAGTCACTT 59.120 36.000 0.00 0.00 0.00 3.16
4603 4833 7.045416 TCTTTGTAGTTTGCTTGAGTCACTTA 58.955 34.615 0.00 0.00 0.00 2.24
4604 4834 6.844696 TTGTAGTTTGCTTGAGTCACTTAG 57.155 37.500 0.00 0.00 0.00 2.18
4605 4835 6.156748 TGTAGTTTGCTTGAGTCACTTAGA 57.843 37.500 0.00 0.00 0.00 2.10
4606 4836 6.759272 TGTAGTTTGCTTGAGTCACTTAGAT 58.241 36.000 0.00 0.00 0.00 1.98
4607 4837 6.646653 TGTAGTTTGCTTGAGTCACTTAGATG 59.353 38.462 0.00 0.00 0.00 2.90
4608 4838 5.615289 AGTTTGCTTGAGTCACTTAGATGT 58.385 37.500 0.00 0.00 0.00 3.06
4609 4839 5.468072 AGTTTGCTTGAGTCACTTAGATGTG 59.532 40.000 0.00 0.00 39.15 3.21
4610 4840 3.329386 TGCTTGAGTCACTTAGATGTGC 58.671 45.455 0.00 0.00 37.81 4.57
4611 4841 3.244181 TGCTTGAGTCACTTAGATGTGCA 60.244 43.478 0.00 0.00 37.81 4.57
4612 4842 3.748048 GCTTGAGTCACTTAGATGTGCAA 59.252 43.478 0.00 0.00 37.81 4.08
4613 4843 4.394300 GCTTGAGTCACTTAGATGTGCAAT 59.606 41.667 0.00 0.00 37.81 3.56
4614 4844 5.582269 GCTTGAGTCACTTAGATGTGCAATA 59.418 40.000 0.00 0.00 37.81 1.90
4615 4845 6.092670 GCTTGAGTCACTTAGATGTGCAATAA 59.907 38.462 0.00 0.00 37.81 1.40
4616 4846 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
4617 4847 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
4618 4848 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
4619 4849 7.759886 TGAGTCACTTAGATGTGCAATAACTAC 59.240 37.037 0.00 0.00 37.81 2.73
4620 4850 6.752351 AGTCACTTAGATGTGCAATAACTACG 59.248 38.462 0.00 0.00 37.81 3.51
4621 4851 6.019801 GTCACTTAGATGTGCAATAACTACGG 60.020 42.308 0.00 0.00 37.81 4.02
4622 4852 4.809426 ACTTAGATGTGCAATAACTACGGC 59.191 41.667 0.00 0.00 0.00 5.68
4623 4853 3.260475 AGATGTGCAATAACTACGGCA 57.740 42.857 0.00 0.00 0.00 5.69
4628 4858 3.260475 TGCAATAACTACGGCACATCT 57.740 42.857 0.00 0.00 0.00 2.90
4629 4859 4.394439 TGCAATAACTACGGCACATCTA 57.606 40.909 0.00 0.00 0.00 1.98
4630 4860 4.368315 TGCAATAACTACGGCACATCTAG 58.632 43.478 0.00 0.00 0.00 2.43
4631 4861 4.098807 TGCAATAACTACGGCACATCTAGA 59.901 41.667 0.00 0.00 0.00 2.43
4632 4862 5.221441 TGCAATAACTACGGCACATCTAGAT 60.221 40.000 0.00 0.00 0.00 1.98
4633 4863 5.119279 GCAATAACTACGGCACATCTAGATG 59.881 44.000 27.63 27.63 44.15 2.90
4645 4875 4.517952 CATCTAGATGTGCCCTAGACAG 57.482 50.000 22.42 0.00 43.57 3.51
4646 4876 3.953542 TCTAGATGTGCCCTAGACAGA 57.046 47.619 0.00 0.00 38.08 3.41
4647 4877 3.556999 TCTAGATGTGCCCTAGACAGAC 58.443 50.000 0.00 0.00 38.08 3.51
4648 4878 1.490574 AGATGTGCCCTAGACAGACC 58.509 55.000 0.00 0.00 0.00 3.85
4649 4879 0.466124 GATGTGCCCTAGACAGACCC 59.534 60.000 0.00 0.00 0.00 4.46
4650 4880 0.983378 ATGTGCCCTAGACAGACCCC 60.983 60.000 0.00 0.00 0.00 4.95
4651 4881 1.612442 GTGCCCTAGACAGACCCCA 60.612 63.158 0.00 0.00 0.00 4.96
4720 4950 4.143137 GGAATTGCAATTGGTGTTAAAGCG 60.143 41.667 28.67 0.00 0.00 4.68
4756 4986 5.737063 GCAAGATTTTGATGTCACTGTTGGT 60.737 40.000 0.00 0.00 36.36 3.67
4797 5027 6.409704 CAGAGGAATTTGTCACTATGAGGAA 58.590 40.000 0.00 0.00 0.00 3.36
4843 5073 1.066573 ACTGCAGCTGAGGTACATGAC 60.067 52.381 20.43 0.00 0.00 3.06
4860 5092 8.466798 GGTACATGACATGCTACCTTTTTAAAT 58.533 33.333 24.88 5.69 35.70 1.40
4900 5132 8.312669 AGCCTATTTGTTAGTGAGAGACTATT 57.687 34.615 0.00 0.00 37.01 1.73
4940 5172 4.157472 GCTCTTTTCAGCTAGAATTGGCTT 59.843 41.667 0.00 0.00 36.59 4.35
4958 5190 8.879342 ATTGGCTTCATTATCTATATCTACGC 57.121 34.615 0.00 0.00 0.00 4.42
4996 5228 7.390823 ACACTTTGTGTTGGTTATTTCCTTTT 58.609 30.769 0.00 0.00 45.08 2.27
5071 5303 4.565564 CCGTTGTACATAGAAGGTAAGCAC 59.434 45.833 0.00 0.00 0.00 4.40
5090 5322 1.001378 ACGTGCATTCTTTTGACCTGC 60.001 47.619 0.00 0.00 37.67 4.85
5094 5326 1.337167 GCATTCTTTTGACCTGCCACC 60.337 52.381 0.00 0.00 33.58 4.61
5132 5367 3.651562 AGCACGTACGTTTATCATTGC 57.348 42.857 20.23 16.17 0.00 3.56
5196 5431 9.941325 ACCAAATCATCAATAATAGTTGCAAAA 57.059 25.926 0.00 0.00 0.00 2.44
5284 5521 8.045176 ACACTTTCCTATTCTAATTTGCACTC 57.955 34.615 0.00 0.00 0.00 3.51
5295 5532 2.937469 TTTGCACTCACTGGTTGTTG 57.063 45.000 0.00 0.00 0.00 3.33
5331 5568 0.107312 GCCAGGCATGTCTGTCATCT 60.107 55.000 24.99 0.00 34.09 2.90
5377 5614 0.174389 GCTGCAGTCATTCTCGAGGA 59.826 55.000 16.64 3.44 0.00 3.71
5378 5615 1.202510 GCTGCAGTCATTCTCGAGGAT 60.203 52.381 16.64 6.46 0.00 3.24
5379 5616 2.471818 CTGCAGTCATTCTCGAGGATG 58.528 52.381 25.41 25.41 0.00 3.51
5380 5617 1.216122 GCAGTCATTCTCGAGGATGC 58.784 55.000 26.34 20.61 0.00 3.91
5381 5618 1.863267 CAGTCATTCTCGAGGATGCC 58.137 55.000 26.34 17.36 0.00 4.40
5386 5623 0.763652 ATTCTCGAGGATGCCATGCT 59.236 50.000 13.56 0.00 0.00 3.79
5422 5659 5.122396 CCTGACTGGAAATACACAGCTAAAC 59.878 44.000 0.00 0.00 38.25 2.01
5463 5702 1.627864 TCTGTCACGATGAACCCTCA 58.372 50.000 0.00 0.00 35.56 3.86
5554 5793 1.963338 GCTTGAGGCTTGAGCACGT 60.963 57.895 15.49 0.00 44.36 4.49
5558 5802 2.281761 AGGCTTGAGCACGTTGGG 60.282 61.111 5.24 0.00 44.36 4.12
5600 5844 7.120285 CCCCATCTGCTATTCATGTGTAATAAG 59.880 40.741 0.00 0.00 0.00 1.73
5603 5847 9.049523 CATCTGCTATTCATGTGTAATAAGTGT 57.950 33.333 0.00 0.00 0.00 3.55
5621 5865 2.616376 GTGTTACAATGTGGCTGTGTGA 59.384 45.455 0.00 0.00 0.00 3.58
5705 5949 0.674534 AACTACCCGCAGATCGATCC 59.325 55.000 21.66 6.69 41.67 3.36
5754 5999 6.892430 GCGTGTTTTGTGTGTTATTTTCTTTC 59.108 34.615 0.00 0.00 0.00 2.62
5756 6001 8.101510 CGTGTTTTGTGTGTTATTTTCTTTCTG 58.898 33.333 0.00 0.00 0.00 3.02
5843 6092 4.596311 CAGTACATGCAGGCGTCA 57.404 55.556 0.00 0.00 0.00 4.35
5844 6093 3.070076 CAGTACATGCAGGCGTCAT 57.930 52.632 0.00 0.00 0.00 3.06
5846 6095 1.860950 CAGTACATGCAGGCGTCATAC 59.139 52.381 0.00 0.00 0.00 2.39
5847 6096 1.757118 AGTACATGCAGGCGTCATACT 59.243 47.619 0.00 0.00 0.00 2.12
5862 6120 3.133003 GTCATACTCCCAGAGCAAAGCTA 59.867 47.826 0.00 0.00 39.88 3.32
5882 6140 3.059352 ACTTGATCCTTGTAGCACACC 57.941 47.619 0.00 0.00 0.00 4.16
5922 6180 2.352127 GGCAAGTTGATGAGCAGGTTTC 60.352 50.000 7.16 0.00 0.00 2.78
5923 6181 2.352127 GCAAGTTGATGAGCAGGTTTCC 60.352 50.000 7.16 0.00 0.00 3.13
5924 6182 2.206576 AGTTGATGAGCAGGTTTCCC 57.793 50.000 0.00 0.00 0.00 3.97
5926 6184 2.087646 GTTGATGAGCAGGTTTCCCTC 58.912 52.381 0.00 0.00 39.89 4.30
5927 6185 1.361204 TGATGAGCAGGTTTCCCTCA 58.639 50.000 0.00 0.00 39.89 3.86
5945 6215 1.635487 TCAACTAGGGCAGGCAAGAAT 59.365 47.619 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 215 1.306141 TTCTCCCCGATGGCTGAGT 60.306 57.895 0.00 0.00 0.00 3.41
216 219 1.764054 CTCCTTCTCCCCGATGGCT 60.764 63.158 0.00 0.00 36.99 4.75
230 233 1.614824 CTTCTCCCCAGCCACTCCT 60.615 63.158 0.00 0.00 0.00 3.69
403 491 1.896694 GCGGGGAATCAATGGCAAA 59.103 52.632 0.00 0.00 0.00 3.68
708 803 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
713 808 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
714 809 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
715 810 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
726 821 2.444351 GCGCAATGTTGTAAGAGCATC 58.556 47.619 0.30 0.00 0.00 3.91
727 822 1.202065 CGCGCAATGTTGTAAGAGCAT 60.202 47.619 8.75 0.00 0.00 3.79
728 823 0.165727 CGCGCAATGTTGTAAGAGCA 59.834 50.000 8.75 0.00 0.00 4.26
729 824 1.128147 GCGCGCAATGTTGTAAGAGC 61.128 55.000 29.10 0.00 0.00 4.09
730 825 0.853224 CGCGCGCAATGTTGTAAGAG 60.853 55.000 32.61 5.56 0.00 2.85
731 826 1.131623 CGCGCGCAATGTTGTAAGA 59.868 52.632 32.61 0.00 0.00 2.10
736 831 2.276617 CTACCGCGCGCAATGTTG 60.277 61.111 32.61 20.20 0.00 3.33
751 846 2.472695 AAAGTGCACGATCAAGCCTA 57.527 45.000 12.01 0.00 0.00 3.93
777 872 2.086610 AAGCTTTTGAGCAAAGGGGA 57.913 45.000 0.00 0.00 42.18 4.81
818 913 2.669434 GCGTACTTCGGAATAACAGCAA 59.331 45.455 0.00 0.00 40.26 3.91
830 925 6.074398 TCTTTATTTCGAAAGCGTACTTCG 57.926 37.500 16.80 8.91 43.12 3.79
863 958 5.407387 TGTGGAAGAGTACGAATTTGCTTAC 59.593 40.000 0.00 0.00 0.00 2.34
867 962 3.496884 TGTGTGGAAGAGTACGAATTTGC 59.503 43.478 0.00 0.00 0.00 3.68
938 1033 1.811679 CGCCGGCTCCTTTCTTCTC 60.812 63.158 26.68 0.00 0.00 2.87
939 1034 2.266055 CGCCGGCTCCTTTCTTCT 59.734 61.111 26.68 0.00 0.00 2.85
940 1035 2.820037 CCGCCGGCTCCTTTCTTC 60.820 66.667 26.68 0.00 0.00 2.87
988 1083 1.075970 TCGCCATGGCTACCTCTCT 60.076 57.895 33.07 0.00 39.32 3.10
989 1084 1.068250 GTCGCCATGGCTACCTCTC 59.932 63.158 33.07 7.60 39.32 3.20
1020 1119 3.706373 GTGGCGCAGGAGAAGGGA 61.706 66.667 10.83 0.00 0.00 4.20
1392 1500 1.133025 CCAAACCTTGCTGCGGATAAG 59.867 52.381 0.00 0.00 0.00 1.73
1395 1503 1.228552 ACCAAACCTTGCTGCGGAT 60.229 52.632 0.00 0.00 0.00 4.18
1398 1506 1.283793 CTGACCAAACCTTGCTGCG 59.716 57.895 0.00 0.00 0.00 5.18
1403 1511 1.528309 ACGGCCTGACCAAACCTTG 60.528 57.895 0.00 0.00 39.03 3.61
1487 1601 0.611618 AAATGGCCCAATCGCACAGA 60.612 50.000 0.00 0.00 0.00 3.41
1488 1602 0.179129 GAAATGGCCCAATCGCACAG 60.179 55.000 0.00 0.00 0.00 3.66
1491 1605 1.947597 GCAGAAATGGCCCAATCGCA 61.948 55.000 0.00 0.00 0.00 5.10
1504 1618 6.434028 AGCAATCTAACTAACCAATGCAGAAA 59.566 34.615 0.00 0.00 35.11 2.52
1512 1626 5.047164 TGGTCGTAGCAATCTAACTAACCAA 60.047 40.000 0.00 0.00 30.57 3.67
1520 1634 3.093814 TGAGGTGGTCGTAGCAATCTAA 58.906 45.455 0.00 0.00 0.00 2.10
1532 1741 2.126189 GCGTACGGTGAGGTGGTC 60.126 66.667 18.39 0.00 0.00 4.02
1647 1856 0.038618 GAAACAAACATCCCCACCGC 60.039 55.000 0.00 0.00 0.00 5.68
1648 1857 1.269448 CAGAAACAAACATCCCCACCG 59.731 52.381 0.00 0.00 0.00 4.94
1817 2035 7.125811 TGCCTACAGTCAATTTCCTCTACTAAT 59.874 37.037 0.00 0.00 0.00 1.73
1830 2048 2.554032 GTGCAACTTGCCTACAGTCAAT 59.446 45.455 11.29 0.00 44.23 2.57
1859 2077 4.379186 GCTACATTATGATGGTGCAGCATC 60.379 45.833 39.25 39.25 39.79 3.91
1876 2094 7.287061 TGCCACAATACTTTAATAGGCTACAT 58.713 34.615 0.00 0.00 41.33 2.29
1910 2128 3.226346 TCAGTTCTACCCATCGAAACG 57.774 47.619 0.00 0.00 0.00 3.60
2005 2223 1.373570 CTCTTGATTCCAGCGGAACC 58.626 55.000 11.39 3.79 45.07 3.62
2011 2230 1.093159 CTGCACCTCTTGATTCCAGC 58.907 55.000 0.00 0.00 0.00 4.85
2198 2417 8.519526 CAAATTATGAAGGCCAAAACTGTACTA 58.480 33.333 5.01 0.00 0.00 1.82
2237 2456 8.947055 AGGAATTCAATATGCATAACAAAACC 57.053 30.769 11.13 9.24 0.00 3.27
2429 2648 1.637338 TCAGAGTGCTCCAGTCATGT 58.363 50.000 3.21 0.00 36.37 3.21
2971 3190 0.541392 ACAAGGCACCGCATCTATCA 59.459 50.000 0.00 0.00 0.00 2.15
3195 3414 7.226918 TCTCAGATGATACTACTAACCTTCGTG 59.773 40.741 0.00 0.00 0.00 4.35
3212 3431 6.808829 AGCAAAAACAAAATGTCTCAGATGA 58.191 32.000 0.00 0.00 0.00 2.92
3314 3533 1.538876 CCCAACCTCCTCCAGTCCA 60.539 63.158 0.00 0.00 0.00 4.02
3407 3626 7.378181 ACAAGAATCCAAATGTCATGGTAAAC 58.622 34.615 0.00 0.00 39.09 2.01
3408 3627 7.537596 ACAAGAATCCAAATGTCATGGTAAA 57.462 32.000 0.00 0.00 39.09 2.01
3410 3629 8.821686 ATAACAAGAATCCAAATGTCATGGTA 57.178 30.769 0.00 0.00 39.09 3.25
3559 3779 6.674066 GGTTCATCACCGAATAAAGTTTTCA 58.326 36.000 0.00 0.00 35.12 2.69
3814 4042 2.610438 ACTCCTGCCAATTGACCATT 57.390 45.000 7.12 0.00 0.00 3.16
3984 4212 4.427312 GCTGGGTGAAGCAGAAAAATATG 58.573 43.478 0.00 0.00 43.01 1.78
4200 4430 6.443527 TGCCATATATTATTACCTGCTCCTCA 59.556 38.462 0.00 0.00 0.00 3.86
4238 4468 2.032290 GCGACCTCCTTTGTGTGTAAAC 60.032 50.000 0.00 0.00 0.00 2.01
4239 4469 2.158871 AGCGACCTCCTTTGTGTGTAAA 60.159 45.455 0.00 0.00 0.00 2.01
4242 4472 0.249911 GAGCGACCTCCTTTGTGTGT 60.250 55.000 0.00 0.00 31.68 3.72
4367 4597 4.797471 GCACACACAATGAGCTTCATTAA 58.203 39.130 9.96 0.00 44.60 1.40
4453 4683 7.951565 GCAAAACTGTAATACAAAATCATGCAC 59.048 33.333 0.00 0.00 0.00 4.57
4498 4728 1.396653 AGATGTGCAATGCTTAGGGC 58.603 50.000 6.82 0.00 42.22 5.19
4499 4729 4.202441 ACTTAGATGTGCAATGCTTAGGG 58.798 43.478 6.82 0.00 0.00 3.53
4500 4730 4.274459 GGACTTAGATGTGCAATGCTTAGG 59.726 45.833 6.82 0.00 0.00 2.69
4501 4731 5.121811 AGGACTTAGATGTGCAATGCTTAG 58.878 41.667 6.82 0.00 0.00 2.18
4502 4732 5.102953 AGGACTTAGATGTGCAATGCTTA 57.897 39.130 6.82 0.00 0.00 3.09
4503 4733 3.960571 AGGACTTAGATGTGCAATGCTT 58.039 40.909 6.82 0.00 0.00 3.91
4504 4734 3.641434 AGGACTTAGATGTGCAATGCT 57.359 42.857 6.82 0.00 0.00 3.79
4505 4735 4.320057 GCATAGGACTTAGATGTGCAATGC 60.320 45.833 0.00 0.00 0.00 3.56
4506 4736 4.214971 GGCATAGGACTTAGATGTGCAATG 59.785 45.833 0.00 0.00 33.05 2.82
4507 4737 4.141413 TGGCATAGGACTTAGATGTGCAAT 60.141 41.667 0.00 0.00 33.05 3.56
4508 4738 3.199727 TGGCATAGGACTTAGATGTGCAA 59.800 43.478 0.00 0.00 33.05 4.08
4509 4739 2.771372 TGGCATAGGACTTAGATGTGCA 59.229 45.455 0.00 0.00 33.05 4.57
4510 4740 3.475566 TGGCATAGGACTTAGATGTGC 57.524 47.619 0.00 0.00 0.00 4.57
4511 4741 5.614308 TCAATGGCATAGGACTTAGATGTG 58.386 41.667 0.00 0.00 0.00 3.21
4512 4742 5.894298 TCAATGGCATAGGACTTAGATGT 57.106 39.130 0.00 0.00 0.00 3.06
4513 4743 7.756395 AAATCAATGGCATAGGACTTAGATG 57.244 36.000 0.00 0.00 0.00 2.90
4514 4744 9.289782 GTAAAATCAATGGCATAGGACTTAGAT 57.710 33.333 0.00 0.00 0.00 1.98
4515 4745 7.441157 CGTAAAATCAATGGCATAGGACTTAGA 59.559 37.037 0.00 0.00 0.00 2.10
4516 4746 7.576236 CGTAAAATCAATGGCATAGGACTTAG 58.424 38.462 0.00 0.00 0.00 2.18
4517 4747 6.017440 GCGTAAAATCAATGGCATAGGACTTA 60.017 38.462 0.00 1.62 0.00 2.24
4518 4748 5.221048 GCGTAAAATCAATGGCATAGGACTT 60.221 40.000 0.00 0.00 0.00 3.01
4519 4749 4.275936 GCGTAAAATCAATGGCATAGGACT 59.724 41.667 0.00 0.00 0.00 3.85
4520 4750 4.537015 GCGTAAAATCAATGGCATAGGAC 58.463 43.478 0.00 0.00 0.00 3.85
4521 4751 3.249799 CGCGTAAAATCAATGGCATAGGA 59.750 43.478 0.00 1.87 0.00 2.94
4522 4752 3.249799 TCGCGTAAAATCAATGGCATAGG 59.750 43.478 5.77 0.00 0.00 2.57
4523 4753 4.466567 TCGCGTAAAATCAATGGCATAG 57.533 40.909 5.77 0.00 0.00 2.23
4524 4754 4.572795 TCTTCGCGTAAAATCAATGGCATA 59.427 37.500 5.77 0.00 0.00 3.14
4525 4755 3.376859 TCTTCGCGTAAAATCAATGGCAT 59.623 39.130 5.77 0.00 0.00 4.40
4526 4756 2.744741 TCTTCGCGTAAAATCAATGGCA 59.255 40.909 5.77 0.00 0.00 4.92
4527 4757 3.398954 TCTTCGCGTAAAATCAATGGC 57.601 42.857 5.77 0.00 0.00 4.40
4528 4758 4.666176 CGAATCTTCGCGTAAAATCAATGG 59.334 41.667 5.77 0.00 44.26 3.16
4529 4759 5.757673 CGAATCTTCGCGTAAAATCAATG 57.242 39.130 5.77 0.00 44.26 2.82
4541 4771 7.582219 AGAAAATGTCTGCACGAATCTTCGC 62.582 44.000 11.96 0.00 44.30 4.70
4542 4772 4.143030 AGAAAATGTCTGCACGAATCTTCG 60.143 41.667 10.58 10.58 45.22 3.79
4543 4773 5.288543 AGAAAATGTCTGCACGAATCTTC 57.711 39.130 0.00 0.00 34.29 2.87
4544 4774 5.695851 AAGAAAATGTCTGCACGAATCTT 57.304 34.783 0.00 0.00 36.40 2.40
4545 4775 5.695851 AAAGAAAATGTCTGCACGAATCT 57.304 34.783 0.00 0.00 36.40 2.40
4546 4776 5.687285 ACAAAAGAAAATGTCTGCACGAATC 59.313 36.000 0.00 0.00 36.40 2.52
4547 4777 5.591099 ACAAAAGAAAATGTCTGCACGAAT 58.409 33.333 0.00 0.00 36.40 3.34
4548 4778 4.992688 ACAAAAGAAAATGTCTGCACGAA 58.007 34.783 0.00 0.00 36.40 3.85
4549 4779 4.597079 GACAAAAGAAAATGTCTGCACGA 58.403 39.130 0.00 0.00 42.07 4.35
4550 4780 4.936396 GACAAAAGAAAATGTCTGCACG 57.064 40.909 0.00 0.00 42.07 5.34
4556 4786 9.794685 AAAGAAGAAGAGACAAAAGAAAATGTC 57.205 29.630 0.00 0.00 44.92 3.06
4557 4787 9.578439 CAAAGAAGAAGAGACAAAAGAAAATGT 57.422 29.630 0.00 0.00 0.00 2.71
4558 4788 9.578439 ACAAAGAAGAAGAGACAAAAGAAAATG 57.422 29.630 0.00 0.00 0.00 2.32
4561 4791 9.449719 ACTACAAAGAAGAAGAGACAAAAGAAA 57.550 29.630 0.00 0.00 0.00 2.52
4562 4792 9.449719 AACTACAAAGAAGAAGAGACAAAAGAA 57.550 29.630 0.00 0.00 0.00 2.52
4563 4793 9.449719 AAACTACAAAGAAGAAGAGACAAAAGA 57.550 29.630 0.00 0.00 0.00 2.52
4564 4794 9.495754 CAAACTACAAAGAAGAAGAGACAAAAG 57.504 33.333 0.00 0.00 0.00 2.27
4565 4795 7.968405 GCAAACTACAAAGAAGAAGAGACAAAA 59.032 33.333 0.00 0.00 0.00 2.44
4566 4796 7.336931 AGCAAACTACAAAGAAGAAGAGACAAA 59.663 33.333 0.00 0.00 0.00 2.83
4567 4797 6.823689 AGCAAACTACAAAGAAGAAGAGACAA 59.176 34.615 0.00 0.00 0.00 3.18
4568 4798 6.349300 AGCAAACTACAAAGAAGAAGAGACA 58.651 36.000 0.00 0.00 0.00 3.41
4569 4799 6.852858 AGCAAACTACAAAGAAGAAGAGAC 57.147 37.500 0.00 0.00 0.00 3.36
4570 4800 7.047891 TCAAGCAAACTACAAAGAAGAAGAGA 58.952 34.615 0.00 0.00 0.00 3.10
4571 4801 7.011857 ACTCAAGCAAACTACAAAGAAGAAGAG 59.988 37.037 0.00 0.00 0.00 2.85
4572 4802 6.823689 ACTCAAGCAAACTACAAAGAAGAAGA 59.176 34.615 0.00 0.00 0.00 2.87
4573 4803 7.020914 ACTCAAGCAAACTACAAAGAAGAAG 57.979 36.000 0.00 0.00 0.00 2.85
4574 4804 6.597672 TGACTCAAGCAAACTACAAAGAAGAA 59.402 34.615 0.00 0.00 0.00 2.52
4575 4805 6.037172 GTGACTCAAGCAAACTACAAAGAAGA 59.963 38.462 0.00 0.00 0.00 2.87
4576 4806 6.037610 AGTGACTCAAGCAAACTACAAAGAAG 59.962 38.462 0.00 0.00 0.00 2.85
4577 4807 5.880332 AGTGACTCAAGCAAACTACAAAGAA 59.120 36.000 0.00 0.00 0.00 2.52
4578 4808 5.428253 AGTGACTCAAGCAAACTACAAAGA 58.572 37.500 0.00 0.00 0.00 2.52
4579 4809 5.741388 AGTGACTCAAGCAAACTACAAAG 57.259 39.130 0.00 0.00 0.00 2.77
4580 4810 7.045416 TCTAAGTGACTCAAGCAAACTACAAA 58.955 34.615 0.00 0.00 0.00 2.83
4581 4811 6.578944 TCTAAGTGACTCAAGCAAACTACAA 58.421 36.000 0.00 0.00 0.00 2.41
4582 4812 6.156748 TCTAAGTGACTCAAGCAAACTACA 57.843 37.500 0.00 0.00 0.00 2.74
4583 4813 6.647067 ACATCTAAGTGACTCAAGCAAACTAC 59.353 38.462 0.00 0.00 0.00 2.73
4584 4814 6.646653 CACATCTAAGTGACTCAAGCAAACTA 59.353 38.462 0.00 0.00 42.05 2.24
4585 4815 5.468072 CACATCTAAGTGACTCAAGCAAACT 59.532 40.000 0.00 0.00 42.05 2.66
4586 4816 5.683859 CACATCTAAGTGACTCAAGCAAAC 58.316 41.667 0.00 0.00 42.05 2.93
4587 4817 4.214119 GCACATCTAAGTGACTCAAGCAAA 59.786 41.667 0.00 0.00 42.05 3.68
4588 4818 3.748048 GCACATCTAAGTGACTCAAGCAA 59.252 43.478 0.00 0.00 42.05 3.91
4589 4819 3.244181 TGCACATCTAAGTGACTCAAGCA 60.244 43.478 0.00 0.00 42.05 3.91
4590 4820 3.329386 TGCACATCTAAGTGACTCAAGC 58.671 45.455 0.00 0.00 42.05 4.01
4591 4821 7.332926 AGTTATTGCACATCTAAGTGACTCAAG 59.667 37.037 0.00 0.00 42.05 3.02
4592 4822 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
4593 4823 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
4594 4824 7.043986 CGTAGTTATTGCACATCTAAGTGACTC 60.044 40.741 0.00 0.00 42.05 3.36
4595 4825 6.752351 CGTAGTTATTGCACATCTAAGTGACT 59.248 38.462 0.00 0.00 42.05 3.41
4596 4826 6.019801 CCGTAGTTATTGCACATCTAAGTGAC 60.020 42.308 0.00 0.00 42.05 3.67
4597 4827 6.040247 CCGTAGTTATTGCACATCTAAGTGA 58.960 40.000 0.00 0.00 42.05 3.41
4598 4828 5.276868 GCCGTAGTTATTGCACATCTAAGTG 60.277 44.000 0.00 0.00 42.37 3.16
4599 4829 4.809426 GCCGTAGTTATTGCACATCTAAGT 59.191 41.667 0.00 0.00 0.00 2.24
4600 4830 4.808895 TGCCGTAGTTATTGCACATCTAAG 59.191 41.667 0.00 0.00 0.00 2.18
4601 4831 4.760878 TGCCGTAGTTATTGCACATCTAA 58.239 39.130 0.00 0.00 0.00 2.10
4602 4832 4.394439 TGCCGTAGTTATTGCACATCTA 57.606 40.909 0.00 0.00 0.00 1.98
4603 4833 3.260475 TGCCGTAGTTATTGCACATCT 57.740 42.857 0.00 0.00 0.00 2.90
4608 4838 3.260475 AGATGTGCCGTAGTTATTGCA 57.740 42.857 0.00 0.00 0.00 4.08
4609 4839 4.617959 TCTAGATGTGCCGTAGTTATTGC 58.382 43.478 0.00 0.00 0.00 3.56
4610 4840 6.696825 CATCTAGATGTGCCGTAGTTATTG 57.303 41.667 22.42 0.00 34.23 1.90
4624 4854 4.022416 GTCTGTCTAGGGCACATCTAGATG 60.022 50.000 27.63 27.63 43.25 2.90
4625 4855 4.148838 GTCTGTCTAGGGCACATCTAGAT 58.851 47.826 0.00 0.00 43.25 1.98
4626 4856 3.556999 GTCTGTCTAGGGCACATCTAGA 58.443 50.000 0.00 0.00 40.38 2.43
4627 4857 2.625790 GGTCTGTCTAGGGCACATCTAG 59.374 54.545 0.00 0.00 36.46 2.43
4628 4858 2.667470 GGTCTGTCTAGGGCACATCTA 58.333 52.381 0.00 0.00 0.00 1.98
4629 4859 1.490574 GGTCTGTCTAGGGCACATCT 58.509 55.000 0.00 0.00 0.00 2.90
4630 4860 0.466124 GGGTCTGTCTAGGGCACATC 59.534 60.000 0.00 0.00 0.00 3.06
4631 4861 0.983378 GGGGTCTGTCTAGGGCACAT 60.983 60.000 0.00 0.00 0.00 3.21
4632 4862 1.612442 GGGGTCTGTCTAGGGCACA 60.612 63.158 0.00 0.00 0.00 4.57
4633 4863 1.612442 TGGGGTCTGTCTAGGGCAC 60.612 63.158 0.00 0.00 0.00 5.01
4634 4864 1.612442 GTGGGGTCTGTCTAGGGCA 60.612 63.158 0.00 0.00 0.00 5.36
4635 4865 0.910088 AAGTGGGGTCTGTCTAGGGC 60.910 60.000 0.00 0.00 0.00 5.19
4636 4866 1.196012 GAAGTGGGGTCTGTCTAGGG 58.804 60.000 0.00 0.00 0.00 3.53
4637 4867 2.239681 AGAAGTGGGGTCTGTCTAGG 57.760 55.000 0.00 0.00 0.00 3.02
4638 4868 3.578716 TGAAAGAAGTGGGGTCTGTCTAG 59.421 47.826 0.00 0.00 31.55 2.43
4639 4869 3.583228 TGAAAGAAGTGGGGTCTGTCTA 58.417 45.455 0.00 0.00 31.55 2.59
4640 4870 2.408565 TGAAAGAAGTGGGGTCTGTCT 58.591 47.619 0.00 0.00 31.55 3.41
4641 4871 2.930826 TGAAAGAAGTGGGGTCTGTC 57.069 50.000 0.00 0.00 30.99 3.51
4642 4872 2.158608 CCTTGAAAGAAGTGGGGTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
4643 4873 2.508526 CCTTGAAAGAAGTGGGGTCTG 58.491 52.381 0.00 0.00 0.00 3.51
4644 4874 1.202940 GCCTTGAAAGAAGTGGGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
4645 4875 1.202940 AGCCTTGAAAGAAGTGGGGTC 60.203 52.381 0.00 0.00 0.00 4.46
4646 4876 0.853530 AGCCTTGAAAGAAGTGGGGT 59.146 50.000 0.00 0.00 0.00 4.95
4647 4877 1.615392 CAAGCCTTGAAAGAAGTGGGG 59.385 52.381 0.00 0.00 0.00 4.96
4648 4878 2.310538 ACAAGCCTTGAAAGAAGTGGG 58.689 47.619 12.25 0.00 0.00 4.61
4649 4879 4.114794 CAAACAAGCCTTGAAAGAAGTGG 58.885 43.478 12.25 0.00 0.00 4.00
4650 4880 4.747810 ACAAACAAGCCTTGAAAGAAGTG 58.252 39.130 12.25 1.11 0.00 3.16
4651 4881 4.462483 TGACAAACAAGCCTTGAAAGAAGT 59.538 37.500 12.25 0.83 0.00 3.01
4720 4950 4.022676 TCAAAATCTTGCTTCGTTAACCCC 60.023 41.667 0.00 0.00 32.14 4.95
4797 5027 8.446599 TTTTCTTCGAACTTTTCTAGTTGGAT 57.553 30.769 0.00 0.00 46.61 3.41
4843 5073 7.010738 CAGGAATGCATTTAAAAAGGTAGCATG 59.989 37.037 14.33 0.14 40.67 4.06
4900 5132 7.445096 TGAAAAGAGCTGATTGATAGAACACAA 59.555 33.333 0.00 0.00 0.00 3.33
4940 5172 8.575649 TTCCACAGCGTAGATATAGATAATGA 57.424 34.615 0.00 0.00 0.00 2.57
4958 5190 7.201513 CCAACACAAAGTGTAAATTTTCCACAG 60.202 37.037 17.73 11.68 46.79 3.66
4981 5213 6.311735 ACTCTGCCTAAAAGGAAATAACCAA 58.688 36.000 0.00 0.00 37.67 3.67
4996 5228 3.205507 ACCTCATCCTTAGACTCTGCCTA 59.794 47.826 0.00 0.00 0.00 3.93
5071 5303 1.666888 GGCAGGTCAAAAGAATGCACG 60.667 52.381 0.00 0.00 38.63 5.34
5090 5322 1.496429 AGAAAGGATGGCATAGGGTGG 59.504 52.381 0.00 0.00 0.00 4.61
5094 5326 3.817647 GTGCTAAGAAAGGATGGCATAGG 59.182 47.826 0.00 0.00 32.38 2.57
5183 5418 7.232534 AGTCAAAGATGGGTTTTGCAACTATTA 59.767 33.333 0.00 0.00 35.90 0.98
5196 5431 5.568620 AACTCAACTAGTCAAAGATGGGT 57.431 39.130 0.00 0.00 37.50 4.51
5284 5521 1.110442 TTCCTTGCCAACAACCAGTG 58.890 50.000 0.00 0.00 0.00 3.66
5295 5532 0.461548 GGCCAAGCTATTTCCTTGCC 59.538 55.000 0.00 0.00 38.63 4.52
5331 5568 7.571025 ACAAACTAAGTAAGAACCAGAGGAAA 58.429 34.615 0.00 0.00 0.00 3.13
5380 5617 2.124901 TTTCCGCCGGTAGCATGG 60.125 61.111 1.63 0.00 44.04 3.66
5381 5618 2.469516 GGTTTCCGCCGGTAGCATG 61.470 63.158 1.63 0.00 44.04 4.06
5386 5623 1.909781 AGTCAGGTTTCCGCCGGTA 60.910 57.895 1.63 0.00 0.00 4.02
5393 5630 4.394729 TGTGTATTTCCAGTCAGGTTTCC 58.605 43.478 0.00 0.00 39.02 3.13
5463 5702 6.621316 ACTCATCGTTATCGTACATCTTCT 57.379 37.500 0.00 0.00 38.33 2.85
5509 5748 3.507622 AGGAAAGAAGTGTGCAAATAGGC 59.492 43.478 0.00 0.00 0.00 3.93
5512 5751 5.241506 CAGGAAGGAAAGAAGTGTGCAAATA 59.758 40.000 0.00 0.00 0.00 1.40
5554 5793 2.100087 GGAAAAGAAACTCAACGCCCAA 59.900 45.455 0.00 0.00 0.00 4.12
5558 5802 1.679153 TGGGGAAAAGAAACTCAACGC 59.321 47.619 0.00 0.00 0.00 4.84
5600 5844 2.616376 TCACACAGCCACATTGTAACAC 59.384 45.455 0.00 0.00 0.00 3.32
5603 5847 2.877786 CACTCACACAGCCACATTGTAA 59.122 45.455 0.00 0.00 0.00 2.41
5621 5865 4.927267 TTCAAGGTTGATGATACCCACT 57.073 40.909 0.00 0.00 37.00 4.00
5662 5906 8.718734 GTTAAACTCTATACACTGGTTTTCTGG 58.281 37.037 0.00 0.00 33.18 3.86
5714 5959 2.513964 CACGCACACGGGTAATTAAC 57.486 50.000 0.00 0.00 46.04 2.01
5730 5975 8.101510 CAGAAAGAAAATAACACACAAAACACG 58.898 33.333 0.00 0.00 0.00 4.49
5731 5976 8.379902 CCAGAAAGAAAATAACACACAAAACAC 58.620 33.333 0.00 0.00 0.00 3.32
5754 5999 4.524328 ACTATTGCTTTTCCCTCAAACCAG 59.476 41.667 0.00 0.00 0.00 4.00
5756 6001 5.393135 GCTACTATTGCTTTTCCCTCAAACC 60.393 44.000 0.00 0.00 0.00 3.27
5840 6089 2.093235 AGCTTTGCTCTGGGAGTATGAC 60.093 50.000 0.00 0.00 30.62 3.06
5841 6090 2.191400 AGCTTTGCTCTGGGAGTATGA 58.809 47.619 0.00 0.00 30.62 2.15
5842 6091 2.706339 AGCTTTGCTCTGGGAGTATG 57.294 50.000 0.00 0.00 30.62 2.39
5843 6092 3.379452 AGTAGCTTTGCTCTGGGAGTAT 58.621 45.455 0.00 0.00 40.44 2.12
5844 6093 2.821437 AGTAGCTTTGCTCTGGGAGTA 58.179 47.619 0.00 0.00 40.44 2.59
5846 6095 2.027745 TCAAGTAGCTTTGCTCTGGGAG 60.028 50.000 0.00 0.00 40.44 4.30
5847 6096 1.977854 TCAAGTAGCTTTGCTCTGGGA 59.022 47.619 0.00 0.00 40.44 4.37
5862 6120 2.371841 TGGTGTGCTACAAGGATCAAGT 59.628 45.455 0.00 0.00 0.00 3.16
5877 6135 0.322098 TGGGGACGCTATTTGGTGTG 60.322 55.000 0.00 0.00 0.00 3.82
5882 6140 0.884704 CGGGATGGGGACGCTATTTG 60.885 60.000 0.00 0.00 0.00 2.32
5923 6181 0.393537 CTTGCCTGCCCTAGTTGAGG 60.394 60.000 0.00 0.00 46.25 3.86
5924 6182 0.615331 TCTTGCCTGCCCTAGTTGAG 59.385 55.000 0.00 0.00 0.00 3.02
5926 6184 2.019984 GATTCTTGCCTGCCCTAGTTG 58.980 52.381 0.00 0.00 0.00 3.16
5927 6185 1.918957 AGATTCTTGCCTGCCCTAGTT 59.081 47.619 0.00 0.00 0.00 2.24
5945 6215 6.434028 CACTAATTTTCCAAGATTGGTGGAGA 59.566 38.462 11.27 0.00 45.79 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.