Multiple sequence alignment - TraesCS4B01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G277900 chr4B 100.000 3631 0 0 1 3631 559857646 559854016 0.000000e+00 6706.0
1 TraesCS4B01G277900 chr4B 94.118 51 2 1 3047 3096 305485193 305485143 3.890000e-10 76.8
2 TraesCS4B01G277900 chr4D 96.689 2899 77 8 62 2945 447340938 447338044 0.000000e+00 4804.0
3 TraesCS4B01G277900 chr4D 92.920 226 9 3 3100 3325 447338060 447337842 4.520000e-84 322.0
4 TraesCS4B01G277900 chr4D 97.297 37 1 0 26 62 447340988 447340952 3.030000e-06 63.9
5 TraesCS4B01G277900 chr4A 93.147 2043 112 10 760 2784 19658220 19660252 0.000000e+00 2972.0
6 TraesCS4B01G277900 chr4A 87.394 587 46 16 63 632 19657587 19658162 0.000000e+00 649.0
7 TraesCS4B01G277900 chr4A 92.672 232 10 3 3094 3325 19660478 19660702 9.720000e-86 327.0
8 TraesCS4B01G277900 chr7D 84.314 306 30 12 3331 3629 50645736 50646030 2.130000e-72 283.0
9 TraesCS4B01G277900 chr7D 90.909 55 3 2 3043 3096 3406229 3406282 5.030000e-09 73.1
10 TraesCS4B01G277900 chr2D 87.597 129 8 4 2965 3085 491378979 491378851 3.780000e-30 143.0
11 TraesCS4B01G277900 chr2D 100.000 30 0 0 3 32 602410774 602410803 5.060000e-04 56.5
12 TraesCS4B01G277900 chr2A 90.244 82 7 1 3325 3406 309705753 309705833 4.960000e-19 106.0
13 TraesCS4B01G277900 chrUn 90.625 64 3 3 3035 3096 24266798 24266860 8.360000e-12 82.4
14 TraesCS4B01G277900 chr2B 91.667 60 2 3 3043 3100 435686926 435686868 3.010000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G277900 chr4B 559854016 559857646 3630 True 6706.000000 6706 100.000000 1 3631 1 chr4B.!!$R2 3630
1 TraesCS4B01G277900 chr4D 447337842 447340988 3146 True 1729.966667 4804 95.635333 26 3325 3 chr4D.!!$R1 3299
2 TraesCS4B01G277900 chr4A 19657587 19660702 3115 False 1316.000000 2972 91.071000 63 3325 3 chr4A.!!$F1 3262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 690 0.593128 CCTTTTTGCCGACCTCACAG 59.407 55.0 0.0 0.0 0.0 3.66 F
1228 1268 0.847373 TCTTGCAACACCACCCCTAA 59.153 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1647 0.468771 GATCAAATCCCTGCCCCTGG 60.469 60.0 0.00 0.0 0.0 4.45 R
3051 3196 0.036590 TACGCCGGCCTAAACCTTTT 59.963 50.0 23.46 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.397672 GTCGGTAGGAACCCTAGTCC 58.602 60.000 0.00 0.00 43.54 3.85
20 21 1.064091 GTCGGTAGGAACCCTAGTCCT 60.064 57.143 5.75 5.75 43.54 3.85
21 22 2.173569 GTCGGTAGGAACCCTAGTCCTA 59.826 54.545 3.95 3.95 43.54 2.94
24 25 3.677156 GTAGGAACCCTAGTCCTACCA 57.323 52.381 20.22 0.00 46.18 3.25
56 57 7.383300 ACTCTTATGTGACAACCGTAAGTTTAC 59.617 37.037 0.00 0.00 36.18 2.01
91 106 7.907841 ACTGGGTGGTTACTTTTATTTCTTT 57.092 32.000 0.00 0.00 0.00 2.52
211 227 4.916983 TTTTTGTTCAGTATGTGCTGCT 57.083 36.364 0.00 0.00 37.40 4.24
221 237 1.117142 ATGTGCTGCTGGCCTTTGTT 61.117 50.000 3.32 0.00 40.92 2.83
298 314 4.161189 TGGCACTGGAAAGAAAACATTCAA 59.839 37.500 0.00 0.00 0.00 2.69
651 690 0.593128 CCTTTTTGCCGACCTCACAG 59.407 55.000 0.00 0.00 0.00 3.66
750 789 6.464222 TGTTATCTGTTGTCCGAAAGAGATT 58.536 36.000 9.31 0.00 39.90 2.40
981 1021 3.999663 CGTCTCAAGCTTGAAGAAAGGAT 59.000 43.478 28.16 0.00 36.64 3.24
1052 1092 4.591321 TGATCCTGTTAAAATGCCCTCT 57.409 40.909 0.00 0.00 0.00 3.69
1053 1093 4.526970 TGATCCTGTTAAAATGCCCTCTC 58.473 43.478 0.00 0.00 0.00 3.20
1079 1119 3.499918 CCCATCTCATATTCCGAAGCAAC 59.500 47.826 0.00 0.00 0.00 4.17
1135 1175 2.634940 GCCATCTCCCTCTATTGCTGTA 59.365 50.000 0.00 0.00 0.00 2.74
1227 1267 1.004277 GATCTTGCAACACCACCCCTA 59.996 52.381 0.00 0.00 0.00 3.53
1228 1268 0.847373 TCTTGCAACACCACCCCTAA 59.153 50.000 0.00 0.00 0.00 2.69
1245 1285 7.093509 CCACCCCTAACATTTAATTTGCTTACT 60.094 37.037 0.00 0.00 0.00 2.24
1277 1317 9.778741 TTATTTTTCTAACTATCATCGCCATCT 57.221 29.630 0.00 0.00 0.00 2.90
1362 1402 3.138205 ACATCGATCTTCTGTGTCGAC 57.862 47.619 9.11 9.11 45.72 4.20
1480 1520 7.550196 AGGGCATCTATTTGTAAGCAATTTTTG 59.450 33.333 0.00 0.00 34.18 2.44
1523 1563 5.630896 CACTTCATGTTCAAAGTGCAAAG 57.369 39.130 10.91 0.00 44.03 2.77
1607 1647 3.665745 ACAAAGCCCAACATCACATTC 57.334 42.857 0.00 0.00 0.00 2.67
1785 1833 2.153645 CAGTTAAGCCACACTGCATGA 58.846 47.619 0.00 0.00 34.33 3.07
1860 1909 1.358152 TTCCAAGACCCGGAGATGTT 58.642 50.000 0.73 0.00 33.01 2.71
1891 1940 2.440247 TCGCTCTGAGGATCGGCA 60.440 61.111 6.83 0.00 42.67 5.69
2138 2187 4.201792 CCTCAGAACTGCAGATTGATTTCG 60.202 45.833 23.35 8.92 0.00 3.46
2211 2260 1.076777 CATGCCCGGGAATCCAACT 60.077 57.895 29.31 0.00 0.00 3.16
2212 2261 0.684153 CATGCCCGGGAATCCAACTT 60.684 55.000 29.31 0.00 0.00 2.66
2238 2287 2.006888 ACACCGGCTATTCATTTGTCG 58.993 47.619 0.00 0.00 0.00 4.35
2273 2322 1.531748 CACCGGGTGGATATGGCTT 59.468 57.895 19.63 0.00 39.21 4.35
2309 2358 4.285260 AGACCTTACTCCCGTGTTGTATTT 59.715 41.667 0.00 0.00 0.00 1.40
2362 2411 3.079578 CCGATGGATGGAATGATTGGAG 58.920 50.000 0.00 0.00 0.00 3.86
2395 2444 4.144297 AGAGATCAGTATGTCTCTCCTGC 58.856 47.826 0.00 0.00 44.49 4.85
2441 2499 1.992667 TCAGAATGCACGCTAAGTTCG 59.007 47.619 0.00 0.00 34.76 3.95
2544 2602 1.809209 GCTCTTGAGCTCAGCGACC 60.809 63.158 17.43 5.68 0.00 4.79
2588 2646 5.607119 ACACATCTTTTATTGACGGTGAC 57.393 39.130 0.00 0.00 0.00 3.67
2633 2691 6.039829 ACGACTCACTAATATCTGCATGAAGA 59.960 38.462 5.67 5.67 0.00 2.87
2666 2724 7.406916 TCCCAGTTTAAAGTTATCCAGCATTA 58.593 34.615 0.00 0.00 0.00 1.90
2762 2820 6.202188 ACACTAAATCACCTGTGAAAAGTACG 59.798 38.462 3.79 1.44 43.58 3.67
2814 2955 5.710513 TCAACAAAGATTGGATTGTCCTG 57.289 39.130 0.00 0.00 38.75 3.86
2841 2982 8.038944 TGTCACTAATCTACATTTACTTGACCC 58.961 37.037 0.00 0.00 0.00 4.46
2910 3055 7.086376 GTGAAACAAATGATCTGCACATTAGT 58.914 34.615 1.83 0.00 37.04 2.24
2943 3088 8.641498 AACCAATGAGAGAAAAGAATACATGT 57.359 30.769 2.69 2.69 0.00 3.21
2944 3089 8.273780 ACCAATGAGAGAAAAGAATACATGTC 57.726 34.615 0.00 0.00 0.00 3.06
2945 3090 7.884877 ACCAATGAGAGAAAAGAATACATGTCA 59.115 33.333 0.00 0.00 0.00 3.58
2946 3091 8.396390 CCAATGAGAGAAAAGAATACATGTCAG 58.604 37.037 0.00 0.00 0.00 3.51
2947 3092 8.944029 CAATGAGAGAAAAGAATACATGTCAGT 58.056 33.333 0.00 0.00 0.00 3.41
2948 3093 8.715191 ATGAGAGAAAAGAATACATGTCAGTC 57.285 34.615 0.00 0.00 0.00 3.51
2949 3094 7.901029 TGAGAGAAAAGAATACATGTCAGTCT 58.099 34.615 0.00 0.32 0.00 3.24
2950 3095 7.816513 TGAGAGAAAAGAATACATGTCAGTCTG 59.183 37.037 0.00 0.00 0.00 3.51
2951 3096 6.593382 AGAGAAAAGAATACATGTCAGTCTGC 59.407 38.462 0.00 0.00 0.00 4.26
2952 3097 6.471146 AGAAAAGAATACATGTCAGTCTGCT 58.529 36.000 0.00 0.58 0.00 4.24
2953 3098 6.370994 AGAAAAGAATACATGTCAGTCTGCTG 59.629 38.462 0.00 0.00 43.87 4.41
2954 3099 3.529533 AGAATACATGTCAGTCTGCTGC 58.470 45.455 0.00 0.00 42.29 5.25
2955 3100 1.931906 ATACATGTCAGTCTGCTGCG 58.068 50.000 0.00 0.00 42.29 5.18
2956 3101 0.737367 TACATGTCAGTCTGCTGCGC 60.737 55.000 0.00 0.00 42.29 6.09
2957 3102 1.740664 CATGTCAGTCTGCTGCGCT 60.741 57.895 9.73 0.00 42.29 5.92
2958 3103 1.004080 ATGTCAGTCTGCTGCGCTT 60.004 52.632 9.73 0.00 42.29 4.68
2959 3104 1.296755 ATGTCAGTCTGCTGCGCTTG 61.297 55.000 9.73 2.28 42.29 4.01
2960 3105 1.958205 GTCAGTCTGCTGCGCTTGT 60.958 57.895 9.73 0.00 42.29 3.16
2961 3106 0.667487 GTCAGTCTGCTGCGCTTGTA 60.667 55.000 9.73 0.00 42.29 2.41
2962 3107 0.389037 TCAGTCTGCTGCGCTTGTAG 60.389 55.000 9.73 10.75 42.29 2.74
2976 3121 4.963237 GCTTGTAGCGTCTATGAGATTG 57.037 45.455 0.00 0.00 0.00 2.67
2977 3122 4.363999 GCTTGTAGCGTCTATGAGATTGT 58.636 43.478 0.00 0.00 0.00 2.71
2978 3123 5.520632 GCTTGTAGCGTCTATGAGATTGTA 58.479 41.667 0.00 0.00 0.00 2.41
2979 3124 5.977725 GCTTGTAGCGTCTATGAGATTGTAA 59.022 40.000 0.00 0.00 0.00 2.41
2980 3125 6.074782 GCTTGTAGCGTCTATGAGATTGTAAC 60.075 42.308 0.00 0.00 0.00 2.50
2981 3126 5.828747 TGTAGCGTCTATGAGATTGTAACC 58.171 41.667 0.00 0.00 0.00 2.85
2982 3127 5.593095 TGTAGCGTCTATGAGATTGTAACCT 59.407 40.000 0.00 0.00 0.00 3.50
2983 3128 6.769341 TGTAGCGTCTATGAGATTGTAACCTA 59.231 38.462 0.00 0.00 0.00 3.08
2984 3129 6.710597 AGCGTCTATGAGATTGTAACCTAA 57.289 37.500 0.00 0.00 0.00 2.69
2985 3130 7.108841 AGCGTCTATGAGATTGTAACCTAAA 57.891 36.000 0.00 0.00 0.00 1.85
2986 3131 6.979238 AGCGTCTATGAGATTGTAACCTAAAC 59.021 38.462 0.00 0.00 0.00 2.01
2987 3132 6.979238 GCGTCTATGAGATTGTAACCTAAACT 59.021 38.462 0.00 0.00 0.00 2.66
2988 3133 8.133627 GCGTCTATGAGATTGTAACCTAAACTA 58.866 37.037 0.00 0.00 0.00 2.24
3004 3149 9.529325 AACCTAAACTAAATGTTTTTGCTTCTC 57.471 29.630 0.00 0.00 45.69 2.87
3005 3150 8.141909 ACCTAAACTAAATGTTTTTGCTTCTCC 58.858 33.333 0.00 0.00 45.69 3.71
3006 3151 8.360390 CCTAAACTAAATGTTTTTGCTTCTCCT 58.640 33.333 0.00 0.00 45.69 3.69
3007 3152 9.399403 CTAAACTAAATGTTTTTGCTTCTCCTC 57.601 33.333 0.00 0.00 45.69 3.71
3008 3153 7.588497 AACTAAATGTTTTTGCTTCTCCTCT 57.412 32.000 0.00 0.00 34.84 3.69
3009 3154 7.208225 ACTAAATGTTTTTGCTTCTCCTCTC 57.792 36.000 0.00 0.00 0.00 3.20
3010 3155 5.459536 AAATGTTTTTGCTTCTCCTCTCC 57.540 39.130 0.00 0.00 0.00 3.71
3011 3156 3.864789 TGTTTTTGCTTCTCCTCTCCT 57.135 42.857 0.00 0.00 0.00 3.69
3012 3157 3.744660 TGTTTTTGCTTCTCCTCTCCTC 58.255 45.455 0.00 0.00 0.00 3.71
3013 3158 3.392616 TGTTTTTGCTTCTCCTCTCCTCT 59.607 43.478 0.00 0.00 0.00 3.69
3014 3159 3.971245 TTTTGCTTCTCCTCTCCTCTC 57.029 47.619 0.00 0.00 0.00 3.20
3015 3160 2.917713 TTGCTTCTCCTCTCCTCTCT 57.082 50.000 0.00 0.00 0.00 3.10
3016 3161 2.142356 TGCTTCTCCTCTCCTCTCTG 57.858 55.000 0.00 0.00 0.00 3.35
3017 3162 1.341877 TGCTTCTCCTCTCCTCTCTGG 60.342 57.143 0.00 0.00 37.10 3.86
3018 3163 2.028996 GCTTCTCCTCTCCTCTCTGGG 61.029 61.905 0.00 0.00 36.20 4.45
3019 3164 1.287739 CTTCTCCTCTCCTCTCTGGGT 59.712 57.143 0.00 0.00 36.20 4.51
3020 3165 0.923358 TCTCCTCTCCTCTCTGGGTC 59.077 60.000 0.00 0.00 36.20 4.46
3021 3166 0.926293 CTCCTCTCCTCTCTGGGTCT 59.074 60.000 0.00 0.00 36.20 3.85
3022 3167 1.287739 CTCCTCTCCTCTCTGGGTCTT 59.712 57.143 0.00 0.00 36.20 3.01
3023 3168 1.719378 TCCTCTCCTCTCTGGGTCTTT 59.281 52.381 0.00 0.00 36.20 2.52
3024 3169 1.830477 CCTCTCCTCTCTGGGTCTTTG 59.170 57.143 0.00 0.00 36.20 2.77
3025 3170 2.534990 CTCTCCTCTCTGGGTCTTTGT 58.465 52.381 0.00 0.00 36.20 2.83
3026 3171 2.903135 CTCTCCTCTCTGGGTCTTTGTT 59.097 50.000 0.00 0.00 36.20 2.83
3027 3172 2.634940 TCTCCTCTCTGGGTCTTTGTTG 59.365 50.000 0.00 0.00 36.20 3.33
3028 3173 2.370189 CTCCTCTCTGGGTCTTTGTTGT 59.630 50.000 0.00 0.00 36.20 3.32
3029 3174 3.578716 CTCCTCTCTGGGTCTTTGTTGTA 59.421 47.826 0.00 0.00 36.20 2.41
3030 3175 3.971305 TCCTCTCTGGGTCTTTGTTGTAA 59.029 43.478 0.00 0.00 36.20 2.41
3031 3176 4.410883 TCCTCTCTGGGTCTTTGTTGTAAA 59.589 41.667 0.00 0.00 36.20 2.01
3032 3177 5.073144 TCCTCTCTGGGTCTTTGTTGTAAAT 59.927 40.000 0.00 0.00 36.20 1.40
3033 3178 5.182001 CCTCTCTGGGTCTTTGTTGTAAATG 59.818 44.000 0.00 0.00 0.00 2.32
3034 3179 5.690865 TCTCTGGGTCTTTGTTGTAAATGT 58.309 37.500 0.00 0.00 0.00 2.71
3035 3180 6.833041 TCTCTGGGTCTTTGTTGTAAATGTA 58.167 36.000 0.00 0.00 0.00 2.29
3036 3181 6.708949 TCTCTGGGTCTTTGTTGTAAATGTAC 59.291 38.462 0.00 0.00 0.00 2.90
3037 3182 6.597562 TCTGGGTCTTTGTTGTAAATGTACT 58.402 36.000 0.00 0.00 0.00 2.73
3038 3183 6.708949 TCTGGGTCTTTGTTGTAAATGTACTC 59.291 38.462 0.00 0.00 0.00 2.59
3039 3184 6.597562 TGGGTCTTTGTTGTAAATGTACTCT 58.402 36.000 0.00 0.00 0.00 3.24
3040 3185 6.485313 TGGGTCTTTGTTGTAAATGTACTCTG 59.515 38.462 0.00 0.00 0.00 3.35
3041 3186 6.072673 GGGTCTTTGTTGTAAATGTACTCTGG 60.073 42.308 0.00 0.00 0.00 3.86
3042 3187 6.485648 GGTCTTTGTTGTAAATGTACTCTGGT 59.514 38.462 0.00 0.00 0.00 4.00
3043 3188 7.012989 GGTCTTTGTTGTAAATGTACTCTGGTT 59.987 37.037 0.00 0.00 0.00 3.67
3044 3189 9.048446 GTCTTTGTTGTAAATGTACTCTGGTTA 57.952 33.333 0.00 0.00 0.00 2.85
3045 3190 9.787435 TCTTTGTTGTAAATGTACTCTGGTTAT 57.213 29.630 0.00 0.00 0.00 1.89
3057 3202 9.975218 ATGTACTCTGGTTATTAATGAAAAGGT 57.025 29.630 0.00 0.00 0.00 3.50
3058 3203 9.802039 TGTACTCTGGTTATTAATGAAAAGGTT 57.198 29.630 0.00 0.00 0.00 3.50
3063 3208 8.745590 TCTGGTTATTAATGAAAAGGTTTAGGC 58.254 33.333 0.00 0.00 0.00 3.93
3064 3209 7.842982 TGGTTATTAATGAAAAGGTTTAGGCC 58.157 34.615 0.00 0.00 0.00 5.19
3065 3210 6.976349 GGTTATTAATGAAAAGGTTTAGGCCG 59.024 38.462 0.00 0.00 0.00 6.13
3066 3211 5.592104 ATTAATGAAAAGGTTTAGGCCGG 57.408 39.130 0.00 0.00 0.00 6.13
3067 3212 1.182667 ATGAAAAGGTTTAGGCCGGC 58.817 50.000 21.18 21.18 0.00 6.13
3068 3213 1.238625 TGAAAAGGTTTAGGCCGGCG 61.239 55.000 22.54 0.00 0.00 6.46
3069 3214 1.228337 AAAAGGTTTAGGCCGGCGT 60.228 52.632 26.70 26.70 0.00 5.68
3070 3215 0.036590 AAAAGGTTTAGGCCGGCGTA 59.963 50.000 24.31 24.31 0.00 4.42
3071 3216 0.036590 AAAGGTTTAGGCCGGCGTAA 59.963 50.000 31.94 31.94 0.00 3.18
3072 3217 0.392060 AAGGTTTAGGCCGGCGTAAG 60.392 55.000 32.90 0.00 43.44 2.34
3084 3229 4.501714 CGTAAGCCCGCCGTAGCA 62.502 66.667 0.00 0.00 39.83 3.49
3085 3230 2.108362 GTAAGCCCGCCGTAGCAT 59.892 61.111 0.00 0.00 39.83 3.79
3086 3231 1.954651 GTAAGCCCGCCGTAGCATC 60.955 63.158 0.00 0.00 39.83 3.91
3087 3232 3.493830 TAAGCCCGCCGTAGCATCG 62.494 63.158 0.00 0.00 39.83 3.84
3090 3235 4.201679 CCCGCCGTAGCATCGTCA 62.202 66.667 0.00 0.00 39.83 4.35
3091 3236 2.202690 CCGCCGTAGCATCGTCAA 60.203 61.111 0.00 0.00 39.83 3.18
3092 3237 1.807981 CCGCCGTAGCATCGTCAAA 60.808 57.895 0.00 0.00 39.83 2.69
3093 3238 1.355796 CCGCCGTAGCATCGTCAAAA 61.356 55.000 0.00 0.00 39.83 2.44
3094 3239 0.440758 CGCCGTAGCATCGTCAAAAA 59.559 50.000 0.00 0.00 39.83 1.94
3159 3304 3.309682 TGAGAAGAAAGTTCACAGTTGCG 59.690 43.478 0.00 0.00 0.00 4.85
3250 3395 7.924947 TGAACAGTTCATTTACATTGCATGAAA 59.075 29.630 12.24 0.00 38.37 2.69
3252 3397 8.301730 ACAGTTCATTTACATTGCATGAAAAG 57.698 30.769 0.00 0.00 38.37 2.27
3254 3399 7.117236 CAGTTCATTTACATTGCATGAAAAGCT 59.883 33.333 0.00 0.00 38.37 3.74
3255 3400 6.954616 TCATTTACATTGCATGAAAAGCTG 57.045 33.333 0.00 0.00 0.00 4.24
3256 3401 5.870433 TCATTTACATTGCATGAAAAGCTGG 59.130 36.000 0.00 0.00 0.00 4.85
3257 3402 4.870123 TTACATTGCATGAAAAGCTGGT 57.130 36.364 0.00 0.00 0.00 4.00
3258 3403 3.034721 ACATTGCATGAAAAGCTGGTG 57.965 42.857 0.00 0.00 0.00 4.17
3259 3404 2.629137 ACATTGCATGAAAAGCTGGTGA 59.371 40.909 0.00 0.00 0.00 4.02
3260 3405 3.250744 CATTGCATGAAAAGCTGGTGAG 58.749 45.455 0.00 0.00 0.00 3.51
3270 3415 1.056700 AGCTGGTGAGTGGTGAGGTT 61.057 55.000 0.00 0.00 0.00 3.50
3329 3474 6.605471 TCTTAGCCAAGAGACTATCAAACA 57.395 37.500 0.00 0.00 35.82 2.83
3330 3475 6.398918 TCTTAGCCAAGAGACTATCAAACAC 58.601 40.000 0.00 0.00 35.82 3.32
3331 3476 4.623932 AGCCAAGAGACTATCAAACACA 57.376 40.909 0.00 0.00 0.00 3.72
3332 3477 4.973168 AGCCAAGAGACTATCAAACACAA 58.027 39.130 0.00 0.00 0.00 3.33
3333 3478 5.564550 AGCCAAGAGACTATCAAACACAAT 58.435 37.500 0.00 0.00 0.00 2.71
3334 3479 6.711277 AGCCAAGAGACTATCAAACACAATA 58.289 36.000 0.00 0.00 0.00 1.90
3335 3480 7.168219 AGCCAAGAGACTATCAAACACAATAA 58.832 34.615 0.00 0.00 0.00 1.40
3336 3481 7.335422 AGCCAAGAGACTATCAAACACAATAAG 59.665 37.037 0.00 0.00 0.00 1.73
3337 3482 7.414540 GCCAAGAGACTATCAAACACAATAAGG 60.415 40.741 0.00 0.00 0.00 2.69
3338 3483 7.066284 CCAAGAGACTATCAAACACAATAAGGG 59.934 40.741 0.00 0.00 0.00 3.95
3339 3484 7.259088 AGAGACTATCAAACACAATAAGGGT 57.741 36.000 0.00 0.00 32.92 4.34
3340 3485 7.106239 AGAGACTATCAAACACAATAAGGGTG 58.894 38.462 0.00 0.00 41.95 4.61
3341 3486 6.180472 AGACTATCAAACACAATAAGGGTGG 58.820 40.000 0.00 0.00 40.54 4.61
3342 3487 4.705023 ACTATCAAACACAATAAGGGTGGC 59.295 41.667 0.00 0.00 40.54 5.01
3343 3488 1.883275 TCAAACACAATAAGGGTGGCG 59.117 47.619 0.00 0.00 40.54 5.69
3344 3489 1.611491 CAAACACAATAAGGGTGGCGT 59.389 47.619 0.00 0.00 40.54 5.68
3345 3490 2.814919 CAAACACAATAAGGGTGGCGTA 59.185 45.455 0.00 0.00 40.54 4.42
3346 3491 2.863132 ACACAATAAGGGTGGCGTAA 57.137 45.000 0.00 0.00 40.54 3.18
3347 3492 3.143211 ACACAATAAGGGTGGCGTAAA 57.857 42.857 0.00 0.00 40.54 2.01
3348 3493 3.692690 ACACAATAAGGGTGGCGTAAAT 58.307 40.909 0.00 0.00 40.54 1.40
3349 3494 4.846040 ACACAATAAGGGTGGCGTAAATA 58.154 39.130 0.00 0.00 40.54 1.40
3350 3495 4.879545 ACACAATAAGGGTGGCGTAAATAG 59.120 41.667 0.00 0.00 40.54 1.73
3351 3496 3.881089 ACAATAAGGGTGGCGTAAATAGC 59.119 43.478 0.00 0.00 0.00 2.97
3352 3497 2.228138 TAAGGGTGGCGTAAATAGCG 57.772 50.000 0.00 0.00 35.00 4.26
3369 3514 2.737180 GCATCCTAGCGCTAGCCA 59.263 61.111 34.26 24.04 46.67 4.75
3370 3515 1.666234 GCATCCTAGCGCTAGCCAC 60.666 63.158 34.26 20.48 46.67 5.01
3371 3516 1.005630 CATCCTAGCGCTAGCCACC 60.006 63.158 34.26 0.00 46.67 4.61
3372 3517 2.565645 ATCCTAGCGCTAGCCACCG 61.566 63.158 34.26 21.92 46.67 4.94
3378 3523 4.569023 CGCTAGCCACCGCATCGA 62.569 66.667 9.66 0.00 37.52 3.59
3379 3524 2.029666 GCTAGCCACCGCATCGAT 59.970 61.111 2.29 0.00 37.52 3.59
3380 3525 1.595382 GCTAGCCACCGCATCGATT 60.595 57.895 2.29 0.00 37.52 3.34
3381 3526 1.160329 GCTAGCCACCGCATCGATTT 61.160 55.000 2.29 0.00 37.52 2.17
3382 3527 1.299541 CTAGCCACCGCATCGATTTT 58.700 50.000 0.00 0.00 37.52 1.82
3383 3528 1.670811 CTAGCCACCGCATCGATTTTT 59.329 47.619 0.00 0.00 37.52 1.94
3384 3529 1.745232 AGCCACCGCATCGATTTTTA 58.255 45.000 0.00 0.00 37.52 1.52
3385 3530 1.400494 AGCCACCGCATCGATTTTTAC 59.600 47.619 0.00 0.00 37.52 2.01
3386 3531 1.400494 GCCACCGCATCGATTTTTACT 59.600 47.619 0.00 0.00 34.03 2.24
3387 3532 2.791158 GCCACCGCATCGATTTTTACTG 60.791 50.000 0.00 0.00 34.03 2.74
3388 3533 2.418628 CCACCGCATCGATTTTTACTGT 59.581 45.455 0.00 0.00 0.00 3.55
3389 3534 3.416277 CACCGCATCGATTTTTACTGTG 58.584 45.455 0.00 0.00 0.00 3.66
3390 3535 2.159572 ACCGCATCGATTTTTACTGTGC 60.160 45.455 0.00 0.00 0.00 4.57
3391 3536 2.095853 CCGCATCGATTTTTACTGTGCT 59.904 45.455 0.00 0.00 0.00 4.40
3392 3537 3.308595 CCGCATCGATTTTTACTGTGCTA 59.691 43.478 0.00 0.00 0.00 3.49
3393 3538 4.508971 CGCATCGATTTTTACTGTGCTAG 58.491 43.478 0.00 0.00 0.00 3.42
3394 3539 4.274865 GCATCGATTTTTACTGTGCTAGC 58.725 43.478 8.10 8.10 0.00 3.42
3395 3540 4.034510 GCATCGATTTTTACTGTGCTAGCT 59.965 41.667 17.23 0.00 0.00 3.32
3396 3541 5.234329 GCATCGATTTTTACTGTGCTAGCTA 59.766 40.000 17.23 4.13 0.00 3.32
3397 3542 6.563010 GCATCGATTTTTACTGTGCTAGCTAG 60.563 42.308 16.84 16.84 0.00 3.42
3398 3543 6.203808 TCGATTTTTACTGTGCTAGCTAGA 57.796 37.500 25.15 6.86 0.00 2.43
3399 3544 6.266323 TCGATTTTTACTGTGCTAGCTAGAG 58.734 40.000 25.15 14.90 0.00 2.43
3400 3545 6.095021 TCGATTTTTACTGTGCTAGCTAGAGA 59.905 38.462 25.15 6.88 0.00 3.10
3401 3546 6.752351 CGATTTTTACTGTGCTAGCTAGAGAA 59.248 38.462 25.15 6.04 0.00 2.87
3402 3547 7.275779 CGATTTTTACTGTGCTAGCTAGAGAAA 59.724 37.037 25.15 17.11 0.00 2.52
3403 3548 8.848474 ATTTTTACTGTGCTAGCTAGAGAAAA 57.152 30.769 25.15 21.90 0.00 2.29
3404 3549 8.671384 TTTTTACTGTGCTAGCTAGAGAAAAA 57.329 30.769 25.15 24.16 0.00 1.94
3428 3573 4.781775 AAACAAAAGGGGTAAAAAGGGG 57.218 40.909 0.00 0.00 0.00 4.79
3429 3574 2.051692 ACAAAAGGGGTAAAAAGGGGC 58.948 47.619 0.00 0.00 0.00 5.80
3430 3575 1.001520 CAAAAGGGGTAAAAAGGGGCG 59.998 52.381 0.00 0.00 0.00 6.13
3431 3576 0.543410 AAAGGGGTAAAAAGGGGCGG 60.543 55.000 0.00 0.00 0.00 6.13
3432 3577 1.437013 AAGGGGTAAAAAGGGGCGGA 61.437 55.000 0.00 0.00 0.00 5.54
3433 3578 1.219131 AGGGGTAAAAAGGGGCGGAT 61.219 55.000 0.00 0.00 0.00 4.18
3434 3579 1.040893 GGGGTAAAAAGGGGCGGATG 61.041 60.000 0.00 0.00 0.00 3.51
3435 3580 1.672854 GGGTAAAAAGGGGCGGATGC 61.673 60.000 0.00 0.00 41.71 3.91
3436 3581 0.683179 GGTAAAAAGGGGCGGATGCT 60.683 55.000 0.00 0.00 42.25 3.79
3437 3582 1.409101 GGTAAAAAGGGGCGGATGCTA 60.409 52.381 0.00 0.00 42.25 3.49
3438 3583 1.674441 GTAAAAAGGGGCGGATGCTAC 59.326 52.381 0.00 0.00 42.25 3.58
3439 3584 0.683179 AAAAAGGGGCGGATGCTACC 60.683 55.000 0.00 0.00 42.25 3.18
3451 3596 2.102553 GCTACCGAGCGGAGACAC 59.897 66.667 16.83 0.00 39.39 3.67
3452 3597 2.697761 GCTACCGAGCGGAGACACA 61.698 63.158 16.83 0.00 39.39 3.72
3453 3598 1.880894 CTACCGAGCGGAGACACAA 59.119 57.895 16.83 0.00 38.96 3.33
3454 3599 0.456221 CTACCGAGCGGAGACACAAT 59.544 55.000 16.83 0.00 38.96 2.71
3455 3600 0.892755 TACCGAGCGGAGACACAATT 59.107 50.000 16.83 0.00 38.96 2.32
3456 3601 0.670546 ACCGAGCGGAGACACAATTG 60.671 55.000 16.83 3.24 38.96 2.32
3457 3602 1.361668 CCGAGCGGAGACACAATTGG 61.362 60.000 10.83 1.35 37.50 3.16
3458 3603 1.361668 CGAGCGGAGACACAATTGGG 61.362 60.000 6.04 6.04 0.00 4.12
3459 3604 1.648467 GAGCGGAGACACAATTGGGC 61.648 60.000 7.85 0.39 0.00 5.36
3460 3605 3.039202 GCGGAGACACAATTGGGCG 62.039 63.158 7.85 4.23 0.00 6.13
3461 3606 1.375396 CGGAGACACAATTGGGCGA 60.375 57.895 7.85 0.00 0.00 5.54
3462 3607 1.361668 CGGAGACACAATTGGGCGAG 61.362 60.000 7.85 0.00 0.00 5.03
3463 3608 0.036388 GGAGACACAATTGGGCGAGA 60.036 55.000 7.85 0.00 0.00 4.04
3464 3609 1.079503 GAGACACAATTGGGCGAGAC 58.920 55.000 7.85 0.00 0.00 3.36
3465 3610 0.321653 AGACACAATTGGGCGAGACC 60.322 55.000 7.85 0.00 37.93 3.85
3466 3611 0.321653 GACACAATTGGGCGAGACCT 60.322 55.000 7.85 0.00 39.10 3.85
3467 3612 0.981183 ACACAATTGGGCGAGACCTA 59.019 50.000 7.85 0.00 39.10 3.08
3468 3613 1.066143 ACACAATTGGGCGAGACCTAG 60.066 52.381 7.85 0.00 39.10 3.02
3469 3614 0.107654 ACAATTGGGCGAGACCTAGC 60.108 55.000 10.83 0.00 39.10 3.42
3474 3619 3.541713 GGCGAGACCTAGCCTGGG 61.542 72.222 12.93 0.00 46.09 4.45
3475 3620 3.541713 GCGAGACCTAGCCTGGGG 61.542 72.222 0.00 0.00 0.00 4.96
3476 3621 2.042843 CGAGACCTAGCCTGGGGT 60.043 66.667 0.00 0.00 38.70 4.95
3479 3624 3.957919 GACCTAGCCTGGGGTCTC 58.042 66.667 11.93 0.00 45.99 3.36
3480 3625 1.762858 GACCTAGCCTGGGGTCTCC 60.763 68.421 11.93 0.00 45.99 3.71
3481 3626 2.840102 CCTAGCCTGGGGTCTCCG 60.840 72.222 0.00 0.00 38.76 4.63
3482 3627 2.279073 CTAGCCTGGGGTCTCCGA 59.721 66.667 0.00 0.00 38.76 4.55
3483 3628 1.381327 CTAGCCTGGGGTCTCCGAA 60.381 63.158 0.00 0.00 38.76 4.30
3484 3629 1.677637 CTAGCCTGGGGTCTCCGAAC 61.678 65.000 0.00 0.00 38.76 3.95
3485 3630 4.097361 GCCTGGGGTCTCCGAACC 62.097 72.222 0.00 0.00 39.01 3.62
3486 3631 2.606519 CCTGGGGTCTCCGAACCA 60.607 66.667 0.00 0.00 42.10 3.67
3487 3632 2.660064 CCTGGGGTCTCCGAACCAG 61.660 68.421 0.00 0.00 42.10 4.00
3488 3633 3.316573 CTGGGGTCTCCGAACCAGC 62.317 68.421 0.00 0.00 42.10 4.85
3489 3634 4.097361 GGGGTCTCCGAACCAGCC 62.097 72.222 0.00 0.00 42.10 4.85
3490 3635 4.097361 GGGTCTCCGAACCAGCCC 62.097 72.222 0.00 0.00 39.63 5.19
3491 3636 4.097361 GGTCTCCGAACCAGCCCC 62.097 72.222 0.00 0.00 39.27 5.80
3492 3637 3.003763 GTCTCCGAACCAGCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
3493 3638 2.203938 TCTCCGAACCAGCCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
3494 3639 2.045926 CTCCGAACCAGCCCCTTG 60.046 66.667 0.00 0.00 0.00 3.61
3495 3640 2.852075 TCCGAACCAGCCCCTTGT 60.852 61.111 0.00 0.00 0.00 3.16
3496 3641 2.359975 CCGAACCAGCCCCTTGTC 60.360 66.667 0.00 0.00 0.00 3.18
3497 3642 2.750350 CGAACCAGCCCCTTGTCT 59.250 61.111 0.00 0.00 0.00 3.41
3498 3643 1.376037 CGAACCAGCCCCTTGTCTC 60.376 63.158 0.00 0.00 0.00 3.36
3499 3644 1.831652 CGAACCAGCCCCTTGTCTCT 61.832 60.000 0.00 0.00 0.00 3.10
3500 3645 0.402121 GAACCAGCCCCTTGTCTCTT 59.598 55.000 0.00 0.00 0.00 2.85
3501 3646 0.853530 AACCAGCCCCTTGTCTCTTT 59.146 50.000 0.00 0.00 0.00 2.52
3502 3647 0.111253 ACCAGCCCCTTGTCTCTTTG 59.889 55.000 0.00 0.00 0.00 2.77
3503 3648 0.401738 CCAGCCCCTTGTCTCTTTGA 59.598 55.000 0.00 0.00 0.00 2.69
3504 3649 1.528129 CAGCCCCTTGTCTCTTTGAC 58.472 55.000 0.00 0.00 45.54 3.18
3511 3656 3.479269 GTCTCTTTGACGGCGCCG 61.479 66.667 44.88 44.88 46.03 6.46
3525 3670 3.223589 GCCGCCTCCTCTCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
3526 3671 2.600731 CCGCCTCCTCTCCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
3527 3672 1.528309 CCGCCTCCTCTCCTCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
3528 3673 1.531748 CGCCTCCTCTCCTCTCTCT 59.468 63.158 0.00 0.00 0.00 3.10
3529 3674 0.535102 CGCCTCCTCTCCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
3530 3675 0.535102 GCCTCCTCTCCTCTCTCTCG 60.535 65.000 0.00 0.00 0.00 4.04
3531 3676 1.128200 CCTCCTCTCCTCTCTCTCGA 58.872 60.000 0.00 0.00 0.00 4.04
3532 3677 1.699634 CCTCCTCTCCTCTCTCTCGAT 59.300 57.143 0.00 0.00 0.00 3.59
3533 3678 2.106511 CCTCCTCTCCTCTCTCTCGATT 59.893 54.545 0.00 0.00 0.00 3.34
3534 3679 3.403038 CTCCTCTCCTCTCTCTCGATTC 58.597 54.545 0.00 0.00 0.00 2.52
3535 3680 2.105821 TCCTCTCCTCTCTCTCGATTCC 59.894 54.545 0.00 0.00 0.00 3.01
3536 3681 2.504367 CTCTCCTCTCTCTCGATTCCC 58.496 57.143 0.00 0.00 0.00 3.97
3537 3682 2.106511 CTCTCCTCTCTCTCGATTCCCT 59.893 54.545 0.00 0.00 0.00 4.20
3538 3683 2.512056 TCTCCTCTCTCTCGATTCCCTT 59.488 50.000 0.00 0.00 0.00 3.95
3539 3684 2.884639 CTCCTCTCTCTCGATTCCCTTC 59.115 54.545 0.00 0.00 0.00 3.46
3540 3685 1.606668 CCTCTCTCTCGATTCCCTTCG 59.393 57.143 0.00 0.00 40.46 3.79
3541 3686 1.001815 CTCTCTCTCGATTCCCTTCGC 60.002 57.143 0.00 0.00 38.97 4.70
3542 3687 0.317436 CTCTCTCGATTCCCTTCGCG 60.317 60.000 0.00 0.00 38.97 5.87
3543 3688 1.946650 CTCTCGATTCCCTTCGCGC 60.947 63.158 0.00 0.00 38.97 6.86
3544 3689 2.962253 CTCGATTCCCTTCGCGCC 60.962 66.667 0.00 0.00 38.97 6.53
3545 3690 4.865761 TCGATTCCCTTCGCGCCG 62.866 66.667 0.00 0.00 38.97 6.46
3561 3706 3.322466 CGCCACACCCCTCCTCTT 61.322 66.667 0.00 0.00 0.00 2.85
3562 3707 2.671682 GCCACACCCCTCCTCTTC 59.328 66.667 0.00 0.00 0.00 2.87
3563 3708 2.972819 GCCACACCCCTCCTCTTCC 61.973 68.421 0.00 0.00 0.00 3.46
3564 3709 2.301738 CCACACCCCTCCTCTTCCC 61.302 68.421 0.00 0.00 0.00 3.97
3565 3710 2.125225 ACACCCCTCCTCTTCCCC 59.875 66.667 0.00 0.00 0.00 4.81
3566 3711 3.083997 CACCCCTCCTCTTCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
3567 3712 3.612607 ACCCCTCCTCTTCCCCGT 61.613 66.667 0.00 0.00 0.00 5.28
3568 3713 3.083997 CCCCTCCTCTTCCCCGTG 61.084 72.222 0.00 0.00 0.00 4.94
3569 3714 3.787001 CCCTCCTCTTCCCCGTGC 61.787 72.222 0.00 0.00 0.00 5.34
3570 3715 3.787001 CCTCCTCTTCCCCGTGCC 61.787 72.222 0.00 0.00 0.00 5.01
3571 3716 4.148825 CTCCTCTTCCCCGTGCCG 62.149 72.222 0.00 0.00 0.00 5.69
3573 3718 4.452733 CCTCTTCCCCGTGCCGTC 62.453 72.222 0.00 0.00 0.00 4.79
3574 3719 4.796231 CTCTTCCCCGTGCCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
3587 3732 4.824515 CGTCGGCCTCCCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
3588 3733 3.151022 GTCGGCCTCCCTCCTCTG 61.151 72.222 0.00 0.00 0.00 3.35
3592 3737 3.844090 GCCTCCCTCCTCTGCGTC 61.844 72.222 0.00 0.00 0.00 5.19
3593 3738 2.043450 CCTCCCTCCTCTGCGTCT 60.043 66.667 0.00 0.00 0.00 4.18
3594 3739 2.124693 CCTCCCTCCTCTGCGTCTC 61.125 68.421 0.00 0.00 0.00 3.36
3595 3740 1.077068 CTCCCTCCTCTGCGTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
3596 3741 1.077357 TCCCTCCTCTGCGTCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
3597 3742 2.124693 CCCTCCTCTGCGTCTCTCC 61.125 68.421 0.00 0.00 0.00 3.71
3598 3743 1.077068 CCTCCTCTGCGTCTCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
3599 3744 1.101049 CCTCCTCTGCGTCTCTCCTC 61.101 65.000 0.00 0.00 0.00 3.71
3600 3745 1.436195 CTCCTCTGCGTCTCTCCTCG 61.436 65.000 0.00 0.00 0.00 4.63
3601 3746 1.747367 CCTCTGCGTCTCTCCTCGT 60.747 63.158 0.00 0.00 0.00 4.18
3602 3747 1.711060 CCTCTGCGTCTCTCCTCGTC 61.711 65.000 0.00 0.00 0.00 4.20
3603 3748 2.031044 CTCTGCGTCTCTCCTCGTCG 62.031 65.000 0.00 0.00 0.00 5.12
3604 3749 3.102107 CTGCGTCTCTCCTCGTCGG 62.102 68.421 0.00 0.00 0.00 4.79
3605 3750 3.126225 GCGTCTCTCCTCGTCGGT 61.126 66.667 0.00 0.00 0.00 4.69
3606 3751 3.091529 CGTCTCTCCTCGTCGGTC 58.908 66.667 0.00 0.00 0.00 4.79
3607 3752 1.740664 CGTCTCTCCTCGTCGGTCA 60.741 63.158 0.00 0.00 0.00 4.02
3608 3753 1.090625 CGTCTCTCCTCGTCGGTCAT 61.091 60.000 0.00 0.00 0.00 3.06
3609 3754 0.658897 GTCTCTCCTCGTCGGTCATC 59.341 60.000 0.00 0.00 0.00 2.92
3610 3755 0.810426 TCTCTCCTCGTCGGTCATCG 60.810 60.000 0.00 0.00 40.90 3.84
3611 3756 2.024871 CTCCTCGTCGGTCATCGC 59.975 66.667 0.00 0.00 39.05 4.58
3612 3757 2.437895 TCCTCGTCGGTCATCGCT 60.438 61.111 0.00 0.00 39.05 4.93
3613 3758 2.024871 CCTCGTCGGTCATCGCTC 59.975 66.667 0.00 0.00 39.05 5.03
3614 3759 2.024871 CTCGTCGGTCATCGCTCC 59.975 66.667 0.00 0.00 39.05 4.70
3615 3760 3.791928 CTCGTCGGTCATCGCTCCG 62.792 68.421 0.00 0.00 46.93 4.63
3620 3765 2.024871 GGTCATCGCTCCGAGTCG 59.975 66.667 5.29 5.29 39.91 4.18
3621 3766 2.652496 GTCATCGCTCCGAGTCGC 60.652 66.667 7.12 0.00 39.91 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.064091 AGGACTAGGGTTCCTACCGAC 60.064 57.143 0.00 0.00 46.04 4.79
1 2 1.302907 AGGACTAGGGTTCCTACCGA 58.697 55.000 0.00 0.00 46.04 4.69
2 3 2.580962 GTAGGACTAGGGTTCCTACCG 58.419 57.143 20.22 0.00 46.18 4.02
5 6 4.697802 TTTGGTAGGACTAGGGTTCCTA 57.302 45.455 3.95 3.95 34.61 2.94
6 7 3.572661 TTTGGTAGGACTAGGGTTCCT 57.427 47.619 5.75 5.75 37.71 3.36
7 8 4.645863 TTTTTGGTAGGACTAGGGTTCC 57.354 45.455 0.00 0.00 0.00 3.62
8 9 6.955364 AGTATTTTTGGTAGGACTAGGGTTC 58.045 40.000 0.00 0.00 0.00 3.62
9 10 6.734281 AGAGTATTTTTGGTAGGACTAGGGTT 59.266 38.462 0.00 0.00 0.00 4.11
10 11 6.269974 AGAGTATTTTTGGTAGGACTAGGGT 58.730 40.000 0.00 0.00 0.00 4.34
11 12 6.809976 AGAGTATTTTTGGTAGGACTAGGG 57.190 41.667 0.00 0.00 0.00 3.53
12 13 9.765795 CATAAGAGTATTTTTGGTAGGACTAGG 57.234 37.037 0.00 0.00 0.00 3.02
15 16 8.822805 TCACATAAGAGTATTTTTGGTAGGACT 58.177 33.333 0.00 0.00 0.00 3.85
16 17 8.880750 GTCACATAAGAGTATTTTTGGTAGGAC 58.119 37.037 0.00 0.00 0.00 3.85
17 18 8.598916 TGTCACATAAGAGTATTTTTGGTAGGA 58.401 33.333 0.00 0.00 0.00 2.94
18 19 8.786826 TGTCACATAAGAGTATTTTTGGTAGG 57.213 34.615 0.00 0.00 0.00 3.18
20 21 9.005777 GGTTGTCACATAAGAGTATTTTTGGTA 57.994 33.333 0.00 0.00 0.00 3.25
21 22 7.308348 CGGTTGTCACATAAGAGTATTTTTGGT 60.308 37.037 0.00 0.00 0.00 3.67
22 23 7.021196 CGGTTGTCACATAAGAGTATTTTTGG 58.979 38.462 0.00 0.00 0.00 3.28
23 24 7.581476 ACGGTTGTCACATAAGAGTATTTTTG 58.419 34.615 0.00 0.00 0.00 2.44
24 25 7.739498 ACGGTTGTCACATAAGAGTATTTTT 57.261 32.000 0.00 0.00 0.00 1.94
56 57 6.238648 AGTAACCACCCAGTTTCTGATTTAG 58.761 40.000 0.00 0.00 32.44 1.85
91 106 7.566569 TCCTGGAATCACGGTAATTTATTGTA 58.433 34.615 0.00 0.00 0.00 2.41
96 111 5.878116 CAGTTCCTGGAATCACGGTAATTTA 59.122 40.000 13.07 0.00 0.00 1.40
199 215 0.038744 AAAGGCCAGCAGCACATACT 59.961 50.000 5.01 0.00 46.50 2.12
211 227 2.828520 TCACAGTTTTCAACAAAGGCCA 59.171 40.909 5.01 0.00 0.00 5.36
221 237 3.945285 GGTTGAACCTCTCACAGTTTTCA 59.055 43.478 7.20 0.00 34.73 2.69
450 466 3.890756 ACAATTTGCATGACCAGACTTGA 59.109 39.130 0.00 0.00 0.00 3.02
651 690 9.670719 CAGAAGAAAGAAAAAGATAAGACCAAC 57.329 33.333 0.00 0.00 0.00 3.77
750 789 3.181475 GCGAAAGAGGTGTGAGGATGATA 60.181 47.826 0.00 0.00 0.00 2.15
981 1021 1.610363 TGCCTTGCAAACAACCGATA 58.390 45.000 0.00 0.00 34.76 2.92
1052 1092 3.844640 TCGGAATATGAGATGGGTCTGA 58.155 45.455 0.00 0.00 33.97 3.27
1053 1093 4.564041 CTTCGGAATATGAGATGGGTCTG 58.436 47.826 0.00 0.00 33.97 3.51
1079 1119 2.234661 TGTATGGCTGGAAGTCTCACTG 59.765 50.000 0.00 0.00 41.06 3.66
1135 1175 2.092538 AGAGCAGAAATGCAGCAGGTAT 60.093 45.455 0.00 0.00 37.25 2.73
1277 1317 1.826720 AGAGCGGGTTATACGAACCAA 59.173 47.619 8.64 0.00 42.03 3.67
1480 1520 8.723942 AAGTGATGTTAGGAGTATGATCAAAC 57.276 34.615 0.00 0.00 0.00 2.93
1523 1563 8.237267 AGCTTCATTAACAGCACACTTATTAAC 58.763 33.333 6.04 0.00 38.61 2.01
1607 1647 0.468771 GATCAAATCCCTGCCCCTGG 60.469 60.000 0.00 0.00 0.00 4.45
1718 1758 7.365741 CAGTTACAATGAAGCTGATGTTCTTT 58.634 34.615 0.00 0.00 0.00 2.52
1785 1833 5.540719 AGAGAGTTAAGTGCTACTCAAGGTT 59.459 40.000 0.00 0.00 42.51 3.50
1860 1909 4.687215 GCGACTGCCTGAGCACCA 62.687 66.667 0.00 0.00 46.52 4.17
1891 1940 2.045926 GAATGCCGCCTGGTCACT 60.046 61.111 0.00 0.00 37.67 3.41
1917 1966 2.146073 CTTGTGCCCCAAAGAAGCCG 62.146 60.000 0.00 0.00 31.20 5.52
2138 2187 2.166821 CAGGCACAGGATCTGCTATC 57.833 55.000 5.52 0.00 34.37 2.08
2211 2260 6.207810 ACAAATGAATAGCCGGTGTTTTCTAA 59.792 34.615 1.90 0.00 0.00 2.10
2212 2261 5.708230 ACAAATGAATAGCCGGTGTTTTCTA 59.292 36.000 1.90 0.00 0.00 2.10
2309 2358 6.760770 TGATATTTGACATCGAAGTGTATGCA 59.239 34.615 0.00 0.00 31.16 3.96
2362 2411 6.815089 ACATACTGATCTCTTGAAGGATCAC 58.185 40.000 16.93 1.14 41.99 3.06
2386 2435 1.180907 CACTAGCAGTGCAGGAGAGA 58.819 55.000 19.20 0.00 39.62 3.10
2441 2499 3.067742 CACTCCTGGCAATGGAAATCATC 59.932 47.826 0.00 0.00 34.44 2.92
2608 2666 5.774498 TCATGCAGATATTAGTGAGTCGT 57.226 39.130 0.00 0.00 0.00 4.34
2659 2717 5.996669 TGCTTGTCTGTGATATAATGCTG 57.003 39.130 0.00 0.00 0.00 4.41
2666 2724 5.769662 TGTTCCTTTTGCTTGTCTGTGATAT 59.230 36.000 0.00 0.00 0.00 1.63
2740 2798 6.422701 TGACGTACTTTTCACAGGTGATTTAG 59.577 38.462 2.52 4.14 39.64 1.85
2794 2935 4.895297 ACACAGGACAATCCAATCTTTGTT 59.105 37.500 0.00 0.00 39.61 2.83
2814 2955 8.870879 GGTCAAGTAAATGTAGATTAGTGACAC 58.129 37.037 14.38 0.00 33.86 3.67
2841 2982 4.749598 TGCATATTACAGCTACAATGACCG 59.250 41.667 0.00 0.00 0.00 4.79
2882 3027 3.983344 GTGCAGATCATTTGTTTCACCAC 59.017 43.478 0.00 0.00 0.00 4.16
2955 3100 4.363999 ACAATCTCATAGACGCTACAAGC 58.636 43.478 0.00 0.00 38.02 4.01
2956 3101 6.418226 GGTTACAATCTCATAGACGCTACAAG 59.582 42.308 0.00 0.00 0.00 3.16
2957 3102 6.096423 AGGTTACAATCTCATAGACGCTACAA 59.904 38.462 0.00 0.00 0.00 2.41
2958 3103 5.593095 AGGTTACAATCTCATAGACGCTACA 59.407 40.000 0.00 0.00 0.00 2.74
2959 3104 6.074544 AGGTTACAATCTCATAGACGCTAC 57.925 41.667 0.00 0.00 0.00 3.58
2960 3105 7.812690 TTAGGTTACAATCTCATAGACGCTA 57.187 36.000 0.00 0.00 0.00 4.26
2961 3106 6.710597 TTAGGTTACAATCTCATAGACGCT 57.289 37.500 0.00 0.00 0.00 5.07
2962 3107 6.979238 AGTTTAGGTTACAATCTCATAGACGC 59.021 38.462 0.00 0.00 0.00 5.19
2984 3129 7.255625 GGAGAGGAGAAGCAAAAACATTTAGTT 60.256 37.037 0.00 0.00 43.89 2.24
2985 3130 6.207614 GGAGAGGAGAAGCAAAAACATTTAGT 59.792 38.462 0.00 0.00 0.00 2.24
2986 3131 6.432472 AGGAGAGGAGAAGCAAAAACATTTAG 59.568 38.462 0.00 0.00 0.00 1.85
2987 3132 6.306987 AGGAGAGGAGAAGCAAAAACATTTA 58.693 36.000 0.00 0.00 0.00 1.40
2988 3133 5.143369 AGGAGAGGAGAAGCAAAAACATTT 58.857 37.500 0.00 0.00 0.00 2.32
2989 3134 4.734266 AGGAGAGGAGAAGCAAAAACATT 58.266 39.130 0.00 0.00 0.00 2.71
2990 3135 4.042684 AGAGGAGAGGAGAAGCAAAAACAT 59.957 41.667 0.00 0.00 0.00 2.71
2991 3136 3.392616 AGAGGAGAGGAGAAGCAAAAACA 59.607 43.478 0.00 0.00 0.00 2.83
2992 3137 4.000325 GAGAGGAGAGGAGAAGCAAAAAC 59.000 47.826 0.00 0.00 0.00 2.43
2993 3138 3.906846 AGAGAGGAGAGGAGAAGCAAAAA 59.093 43.478 0.00 0.00 0.00 1.94
2994 3139 3.260380 CAGAGAGGAGAGGAGAAGCAAAA 59.740 47.826 0.00 0.00 0.00 2.44
2995 3140 2.830923 CAGAGAGGAGAGGAGAAGCAAA 59.169 50.000 0.00 0.00 0.00 3.68
2996 3141 2.455557 CAGAGAGGAGAGGAGAAGCAA 58.544 52.381 0.00 0.00 0.00 3.91
2997 3142 1.341877 CCAGAGAGGAGAGGAGAAGCA 60.342 57.143 0.00 0.00 41.22 3.91
2998 3143 1.402787 CCAGAGAGGAGAGGAGAAGC 58.597 60.000 0.00 0.00 41.22 3.86
2999 3144 1.287739 ACCCAGAGAGGAGAGGAGAAG 59.712 57.143 0.00 0.00 41.22 2.85
3000 3145 1.286553 GACCCAGAGAGGAGAGGAGAA 59.713 57.143 0.00 0.00 41.22 2.87
3001 3146 0.923358 GACCCAGAGAGGAGAGGAGA 59.077 60.000 0.00 0.00 41.22 3.71
3002 3147 0.926293 AGACCCAGAGAGGAGAGGAG 59.074 60.000 0.00 0.00 41.22 3.69
3003 3148 1.388174 AAGACCCAGAGAGGAGAGGA 58.612 55.000 0.00 0.00 41.22 3.71
3004 3149 1.830477 CAAAGACCCAGAGAGGAGAGG 59.170 57.143 0.00 0.00 41.22 3.69
3005 3150 2.534990 ACAAAGACCCAGAGAGGAGAG 58.465 52.381 0.00 0.00 41.22 3.20
3006 3151 2.634940 CAACAAAGACCCAGAGAGGAGA 59.365 50.000 0.00 0.00 41.22 3.71
3007 3152 2.370189 ACAACAAAGACCCAGAGAGGAG 59.630 50.000 0.00 0.00 41.22 3.69
3008 3153 2.408565 ACAACAAAGACCCAGAGAGGA 58.591 47.619 0.00 0.00 41.22 3.71
3009 3154 2.938956 ACAACAAAGACCCAGAGAGG 57.061 50.000 0.00 0.00 37.03 3.69
3010 3155 5.765182 ACATTTACAACAAAGACCCAGAGAG 59.235 40.000 0.00 0.00 0.00 3.20
3011 3156 5.690865 ACATTTACAACAAAGACCCAGAGA 58.309 37.500 0.00 0.00 0.00 3.10
3012 3157 6.710744 AGTACATTTACAACAAAGACCCAGAG 59.289 38.462 0.00 0.00 0.00 3.35
3013 3158 6.597562 AGTACATTTACAACAAAGACCCAGA 58.402 36.000 0.00 0.00 0.00 3.86
3014 3159 6.710744 AGAGTACATTTACAACAAAGACCCAG 59.289 38.462 0.00 0.00 0.00 4.45
3015 3160 6.485313 CAGAGTACATTTACAACAAAGACCCA 59.515 38.462 0.00 0.00 0.00 4.51
3016 3161 6.072673 CCAGAGTACATTTACAACAAAGACCC 60.073 42.308 0.00 0.00 0.00 4.46
3017 3162 6.485648 ACCAGAGTACATTTACAACAAAGACC 59.514 38.462 0.00 0.00 0.00 3.85
3018 3163 7.492352 ACCAGAGTACATTTACAACAAAGAC 57.508 36.000 0.00 0.00 0.00 3.01
3019 3164 9.787435 ATAACCAGAGTACATTTACAACAAAGA 57.213 29.630 0.00 0.00 0.00 2.52
3031 3176 9.975218 ACCTTTTCATTAATAACCAGAGTACAT 57.025 29.630 0.00 0.00 0.00 2.29
3032 3177 9.802039 AACCTTTTCATTAATAACCAGAGTACA 57.198 29.630 0.00 0.00 0.00 2.90
3037 3182 8.745590 GCCTAAACCTTTTCATTAATAACCAGA 58.254 33.333 0.00 0.00 0.00 3.86
3038 3183 7.979537 GGCCTAAACCTTTTCATTAATAACCAG 59.020 37.037 0.00 0.00 0.00 4.00
3039 3184 7.363094 CGGCCTAAACCTTTTCATTAATAACCA 60.363 37.037 0.00 0.00 0.00 3.67
3040 3185 6.976349 CGGCCTAAACCTTTTCATTAATAACC 59.024 38.462 0.00 0.00 0.00 2.85
3041 3186 6.976349 CCGGCCTAAACCTTTTCATTAATAAC 59.024 38.462 0.00 0.00 0.00 1.89
3042 3187 6.406065 GCCGGCCTAAACCTTTTCATTAATAA 60.406 38.462 18.11 0.00 0.00 1.40
3043 3188 5.068067 GCCGGCCTAAACCTTTTCATTAATA 59.932 40.000 18.11 0.00 0.00 0.98
3044 3189 4.142026 GCCGGCCTAAACCTTTTCATTAAT 60.142 41.667 18.11 0.00 0.00 1.40
3045 3190 3.193903 GCCGGCCTAAACCTTTTCATTAA 59.806 43.478 18.11 0.00 0.00 1.40
3046 3191 2.756207 GCCGGCCTAAACCTTTTCATTA 59.244 45.455 18.11 0.00 0.00 1.90
3047 3192 1.548719 GCCGGCCTAAACCTTTTCATT 59.451 47.619 18.11 0.00 0.00 2.57
3048 3193 1.182667 GCCGGCCTAAACCTTTTCAT 58.817 50.000 18.11 0.00 0.00 2.57
3049 3194 1.238625 CGCCGGCCTAAACCTTTTCA 61.239 55.000 23.46 0.00 0.00 2.69
3050 3195 1.239296 ACGCCGGCCTAAACCTTTTC 61.239 55.000 23.46 0.00 0.00 2.29
3051 3196 0.036590 TACGCCGGCCTAAACCTTTT 59.963 50.000 23.46 0.00 0.00 2.27
3052 3197 0.036590 TTACGCCGGCCTAAACCTTT 59.963 50.000 23.46 0.00 0.00 3.11
3053 3198 0.392060 CTTACGCCGGCCTAAACCTT 60.392 55.000 23.46 0.00 0.00 3.50
3054 3199 1.219935 CTTACGCCGGCCTAAACCT 59.780 57.895 23.46 0.00 0.00 3.50
3055 3200 2.466982 GCTTACGCCGGCCTAAACC 61.467 63.158 23.46 9.92 0.00 3.27
3056 3201 3.095911 GCTTACGCCGGCCTAAAC 58.904 61.111 23.46 11.82 0.00 2.01
3067 3212 3.785189 ATGCTACGGCGGGCTTACG 62.785 63.158 22.80 0.00 42.25 3.18
3068 3213 1.954651 GATGCTACGGCGGGCTTAC 60.955 63.158 22.80 12.89 42.25 2.34
3069 3214 2.420043 GATGCTACGGCGGGCTTA 59.580 61.111 22.80 8.62 42.25 3.09
3070 3215 4.891727 CGATGCTACGGCGGGCTT 62.892 66.667 22.80 18.11 42.25 4.35
3073 3218 3.709880 TTGACGATGCTACGGCGGG 62.710 63.158 13.24 4.63 45.00 6.13
3074 3219 1.355796 TTTTGACGATGCTACGGCGG 61.356 55.000 13.24 0.00 45.00 6.13
3075 3220 0.440758 TTTTTGACGATGCTACGGCG 59.559 50.000 4.80 4.80 45.00 6.46
3159 3304 6.842163 ACCAAATGTGTATTCAGAACGATTC 58.158 36.000 0.00 0.00 0.00 2.52
3250 3395 1.056700 ACCTCACCACTCACCAGCTT 61.057 55.000 0.00 0.00 0.00 3.74
3252 3397 0.886490 CAACCTCACCACTCACCAGC 60.886 60.000 0.00 0.00 0.00 4.85
3254 3399 1.140852 CTTCAACCTCACCACTCACCA 59.859 52.381 0.00 0.00 0.00 4.17
3255 3400 1.416401 TCTTCAACCTCACCACTCACC 59.584 52.381 0.00 0.00 0.00 4.02
3256 3401 2.365617 TCTCTTCAACCTCACCACTCAC 59.634 50.000 0.00 0.00 0.00 3.51
3257 3402 2.630098 CTCTCTTCAACCTCACCACTCA 59.370 50.000 0.00 0.00 0.00 3.41
3258 3403 2.894126 TCTCTCTTCAACCTCACCACTC 59.106 50.000 0.00 0.00 0.00 3.51
3259 3404 2.896685 CTCTCTCTTCAACCTCACCACT 59.103 50.000 0.00 0.00 0.00 4.00
3260 3405 2.894126 TCTCTCTCTTCAACCTCACCAC 59.106 50.000 0.00 0.00 0.00 4.16
3320 3465 4.201910 CGCCACCCTTATTGTGTTTGATAG 60.202 45.833 0.00 0.00 31.71 2.08
3325 3470 1.989706 ACGCCACCCTTATTGTGTTT 58.010 45.000 0.00 0.00 31.71 2.83
3326 3471 2.863132 TACGCCACCCTTATTGTGTT 57.137 45.000 0.00 0.00 31.71 3.32
3327 3472 2.863132 TTACGCCACCCTTATTGTGT 57.137 45.000 0.00 0.00 31.71 3.72
3328 3473 4.261031 GCTATTTACGCCACCCTTATTGTG 60.261 45.833 0.00 0.00 0.00 3.33
3329 3474 3.881089 GCTATTTACGCCACCCTTATTGT 59.119 43.478 0.00 0.00 0.00 2.71
3330 3475 3.059188 CGCTATTTACGCCACCCTTATTG 60.059 47.826 0.00 0.00 0.00 1.90
3331 3476 3.135994 CGCTATTTACGCCACCCTTATT 58.864 45.455 0.00 0.00 0.00 1.40
3332 3477 2.762745 CGCTATTTACGCCACCCTTAT 58.237 47.619 0.00 0.00 0.00 1.73
3333 3478 2.228138 CGCTATTTACGCCACCCTTA 57.772 50.000 0.00 0.00 0.00 2.69
3334 3479 3.074594 CGCTATTTACGCCACCCTT 57.925 52.632 0.00 0.00 0.00 3.95
3335 3480 4.848685 CGCTATTTACGCCACCCT 57.151 55.556 0.00 0.00 0.00 4.34
3352 3497 1.666234 GTGGCTAGCGCTAGGATGC 60.666 63.158 37.97 27.16 36.09 3.91
3353 3498 1.005630 GGTGGCTAGCGCTAGGATG 60.006 63.158 37.97 19.80 36.09 3.51
3354 3499 2.565645 CGGTGGCTAGCGCTAGGAT 61.566 63.158 37.97 9.04 41.20 3.24
3355 3500 3.217017 CGGTGGCTAGCGCTAGGA 61.217 66.667 37.97 12.41 41.20 2.94
3362 3507 1.160329 AAATCGATGCGGTGGCTAGC 61.160 55.000 6.04 6.04 40.82 3.42
3363 3508 1.299541 AAAATCGATGCGGTGGCTAG 58.700 50.000 0.00 0.00 40.82 3.42
3364 3509 1.745232 AAAAATCGATGCGGTGGCTA 58.255 45.000 0.00 0.00 40.82 3.93
3365 3510 1.400494 GTAAAAATCGATGCGGTGGCT 59.600 47.619 0.00 0.00 40.82 4.75
3366 3511 1.400494 AGTAAAAATCGATGCGGTGGC 59.600 47.619 0.00 0.00 40.52 5.01
3367 3512 2.418628 ACAGTAAAAATCGATGCGGTGG 59.581 45.455 0.00 0.00 0.00 4.61
3368 3513 3.416277 CACAGTAAAAATCGATGCGGTG 58.584 45.455 0.00 0.00 0.00 4.94
3369 3514 2.159572 GCACAGTAAAAATCGATGCGGT 60.160 45.455 0.00 0.00 0.00 5.68
3370 3515 2.095853 AGCACAGTAAAAATCGATGCGG 59.904 45.455 0.00 0.00 36.71 5.69
3371 3516 3.389687 AGCACAGTAAAAATCGATGCG 57.610 42.857 0.00 0.00 36.71 4.73
3372 3517 4.034510 AGCTAGCACAGTAAAAATCGATGC 59.965 41.667 18.83 0.00 0.00 3.91
3373 3518 5.725110 AGCTAGCACAGTAAAAATCGATG 57.275 39.130 18.83 0.00 0.00 3.84
3374 3519 6.806751 TCTAGCTAGCACAGTAAAAATCGAT 58.193 36.000 18.83 0.00 0.00 3.59
3375 3520 6.095021 TCTCTAGCTAGCACAGTAAAAATCGA 59.905 38.462 18.83 0.00 0.00 3.59
3376 3521 6.266323 TCTCTAGCTAGCACAGTAAAAATCG 58.734 40.000 18.83 0.00 0.00 3.34
3377 3522 8.480643 TTTCTCTAGCTAGCACAGTAAAAATC 57.519 34.615 18.83 0.00 0.00 2.17
3378 3523 8.848474 TTTTCTCTAGCTAGCACAGTAAAAAT 57.152 30.769 18.83 0.00 0.00 1.82
3379 3524 8.671384 TTTTTCTCTAGCTAGCACAGTAAAAA 57.329 30.769 18.83 21.54 0.00 1.94
3405 3550 5.511363 CCCCTTTTTACCCCTTTTGTTTTT 58.489 37.500 0.00 0.00 0.00 1.94
3406 3551 4.629204 GCCCCTTTTTACCCCTTTTGTTTT 60.629 41.667 0.00 0.00 0.00 2.43
3407 3552 3.117813 GCCCCTTTTTACCCCTTTTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
3408 3553 2.440253 GCCCCTTTTTACCCCTTTTGTT 59.560 45.455 0.00 0.00 0.00 2.83
3409 3554 2.051692 GCCCCTTTTTACCCCTTTTGT 58.948 47.619 0.00 0.00 0.00 2.83
3410 3555 1.001520 CGCCCCTTTTTACCCCTTTTG 59.998 52.381 0.00 0.00 0.00 2.44
3411 3556 1.344065 CGCCCCTTTTTACCCCTTTT 58.656 50.000 0.00 0.00 0.00 2.27
3412 3557 0.543410 CCGCCCCTTTTTACCCCTTT 60.543 55.000 0.00 0.00 0.00 3.11
3413 3558 1.077805 CCGCCCCTTTTTACCCCTT 59.922 57.895 0.00 0.00 0.00 3.95
3414 3559 1.219131 ATCCGCCCCTTTTTACCCCT 61.219 55.000 0.00 0.00 0.00 4.79
3415 3560 1.040893 CATCCGCCCCTTTTTACCCC 61.041 60.000 0.00 0.00 0.00 4.95
3416 3561 1.672854 GCATCCGCCCCTTTTTACCC 61.673 60.000 0.00 0.00 0.00 3.69
3417 3562 0.683179 AGCATCCGCCCCTTTTTACC 60.683 55.000 0.00 0.00 39.83 2.85
3418 3563 1.674441 GTAGCATCCGCCCCTTTTTAC 59.326 52.381 0.00 0.00 39.83 2.01
3419 3564 1.409101 GGTAGCATCCGCCCCTTTTTA 60.409 52.381 0.00 0.00 39.83 1.52
3420 3565 0.683179 GGTAGCATCCGCCCCTTTTT 60.683 55.000 0.00 0.00 39.83 1.94
3421 3566 1.076995 GGTAGCATCCGCCCCTTTT 60.077 57.895 0.00 0.00 39.83 2.27
3422 3567 2.595655 GGTAGCATCCGCCCCTTT 59.404 61.111 0.00 0.00 39.83 3.11
3423 3568 3.861797 CGGTAGCATCCGCCCCTT 61.862 66.667 6.65 0.00 43.96 3.95
3434 3579 2.102553 GTGTCTCCGCTCGGTAGC 59.897 66.667 8.28 0.00 45.86 3.58
3435 3580 0.456221 ATTGTGTCTCCGCTCGGTAG 59.544 55.000 8.28 5.05 36.47 3.18
3436 3581 0.892755 AATTGTGTCTCCGCTCGGTA 59.107 50.000 8.28 0.00 36.47 4.02
3437 3582 0.670546 CAATTGTGTCTCCGCTCGGT 60.671 55.000 8.28 0.00 36.47 4.69
3438 3583 1.361668 CCAATTGTGTCTCCGCTCGG 61.362 60.000 4.43 1.14 0.00 4.63
3439 3584 1.361668 CCCAATTGTGTCTCCGCTCG 61.362 60.000 4.43 0.00 0.00 5.03
3440 3585 1.648467 GCCCAATTGTGTCTCCGCTC 61.648 60.000 4.43 0.00 0.00 5.03
3441 3586 1.675641 GCCCAATTGTGTCTCCGCT 60.676 57.895 4.43 0.00 0.00 5.52
3442 3587 2.877691 GCCCAATTGTGTCTCCGC 59.122 61.111 4.43 0.00 0.00 5.54
3443 3588 1.361668 CTCGCCCAATTGTGTCTCCG 61.362 60.000 4.43 0.00 0.00 4.63
3444 3589 0.036388 TCTCGCCCAATTGTGTCTCC 60.036 55.000 4.43 0.00 0.00 3.71
3445 3590 1.079503 GTCTCGCCCAATTGTGTCTC 58.920 55.000 4.43 0.00 0.00 3.36
3446 3591 0.321653 GGTCTCGCCCAATTGTGTCT 60.322 55.000 4.43 0.00 0.00 3.41
3447 3592 0.321653 AGGTCTCGCCCAATTGTGTC 60.322 55.000 4.43 0.00 38.26 3.67
3448 3593 0.981183 TAGGTCTCGCCCAATTGTGT 59.019 50.000 4.43 0.00 38.26 3.72
3449 3594 1.656652 CTAGGTCTCGCCCAATTGTG 58.343 55.000 4.43 0.00 38.26 3.33
3450 3595 0.107654 GCTAGGTCTCGCCCAATTGT 60.108 55.000 4.43 0.00 38.26 2.71
3451 3596 0.815615 GGCTAGGTCTCGCCCAATTG 60.816 60.000 0.00 0.00 40.43 2.32
3452 3597 1.527370 GGCTAGGTCTCGCCCAATT 59.473 57.895 2.46 0.00 40.43 2.32
3453 3598 3.231298 GGCTAGGTCTCGCCCAAT 58.769 61.111 2.46 0.00 40.43 3.16
3457 3602 3.541713 CCCAGGCTAGGTCTCGCC 61.542 72.222 5.49 5.49 46.65 5.54
3458 3603 3.541713 CCCCAGGCTAGGTCTCGC 61.542 72.222 0.00 0.00 0.00 5.03
3459 3604 2.042843 ACCCCAGGCTAGGTCTCG 60.043 66.667 2.62 0.00 0.00 4.04
3463 3608 2.369001 GGAGACCCCAGGCTAGGT 59.631 66.667 8.07 8.07 39.75 3.08
3464 3609 2.840102 CGGAGACCCCAGGCTAGG 60.840 72.222 1.31 1.31 34.14 3.02
3465 3610 1.381327 TTCGGAGACCCCAGGCTAG 60.381 63.158 0.00 0.00 34.32 3.42
3466 3611 1.684734 GTTCGGAGACCCCAGGCTA 60.685 63.158 0.00 0.00 34.32 3.93
3467 3612 3.003763 GTTCGGAGACCCCAGGCT 61.004 66.667 0.00 0.00 34.32 4.58
3468 3613 4.097361 GGTTCGGAGACCCCAGGC 62.097 72.222 0.00 0.00 30.45 4.85
3469 3614 2.606519 TGGTTCGGAGACCCCAGG 60.607 66.667 6.82 0.00 38.87 4.45
3470 3615 2.982130 CTGGTTCGGAGACCCCAG 59.018 66.667 0.00 0.00 45.47 4.45
3471 3616 3.319198 GCTGGTTCGGAGACCCCA 61.319 66.667 6.82 0.00 38.87 4.96
3472 3617 4.097361 GGCTGGTTCGGAGACCCC 62.097 72.222 6.82 0.00 38.87 4.95
3473 3618 4.097361 GGGCTGGTTCGGAGACCC 62.097 72.222 6.82 0.00 40.65 4.46
3474 3619 4.097361 GGGGCTGGTTCGGAGACC 62.097 72.222 0.00 0.00 37.99 3.85
3475 3620 2.593956 AAGGGGCTGGTTCGGAGAC 61.594 63.158 0.00 0.00 34.32 3.36
3476 3621 2.203938 AAGGGGCTGGTTCGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
3477 3622 2.045926 CAAGGGGCTGGTTCGGAG 60.046 66.667 0.00 0.00 0.00 4.63
3478 3623 2.852075 ACAAGGGGCTGGTTCGGA 60.852 61.111 0.00 0.00 0.00 4.55
3479 3624 2.359975 GACAAGGGGCTGGTTCGG 60.360 66.667 0.00 0.00 0.00 4.30
3480 3625 1.376037 GAGACAAGGGGCTGGTTCG 60.376 63.158 0.00 0.00 0.00 3.95
3481 3626 0.402121 AAGAGACAAGGGGCTGGTTC 59.598 55.000 0.00 0.00 0.00 3.62
3482 3627 0.853530 AAAGAGACAAGGGGCTGGTT 59.146 50.000 0.00 0.00 0.00 3.67
3483 3628 0.111253 CAAAGAGACAAGGGGCTGGT 59.889 55.000 0.00 0.00 0.00 4.00
3484 3629 0.401738 TCAAAGAGACAAGGGGCTGG 59.598 55.000 0.00 0.00 0.00 4.85
3485 3630 1.528129 GTCAAAGAGACAAGGGGCTG 58.472 55.000 0.00 0.00 46.77 4.85
3494 3639 3.479269 CGGCGCCGTCAAAGAGAC 61.479 66.667 39.71 0.53 44.02 3.36
3508 3653 3.223589 GAGAGGAGAGGAGGCGGC 61.224 72.222 0.00 0.00 0.00 6.53
3509 3654 1.528309 GAGAGAGGAGAGGAGGCGG 60.528 68.421 0.00 0.00 0.00 6.13
3510 3655 0.535102 GAGAGAGAGGAGAGGAGGCG 60.535 65.000 0.00 0.00 0.00 5.52
3511 3656 0.535102 CGAGAGAGAGGAGAGGAGGC 60.535 65.000 0.00 0.00 0.00 4.70
3512 3657 1.128200 TCGAGAGAGAGGAGAGGAGG 58.872 60.000 0.00 0.00 34.84 4.30
3521 3666 4.501174 CGCGAAGGGAATCGAGAGAGAG 62.501 59.091 0.00 0.00 44.75 3.20
3522 3667 2.674344 CGCGAAGGGAATCGAGAGAGA 61.674 57.143 0.00 0.00 44.75 3.10
3523 3668 0.317436 CGCGAAGGGAATCGAGAGAG 60.317 60.000 0.00 0.00 44.75 3.20
3524 3669 1.728069 CGCGAAGGGAATCGAGAGA 59.272 57.895 0.00 0.00 45.48 3.10
3525 3670 1.946650 GCGCGAAGGGAATCGAGAG 60.947 63.158 12.10 0.00 45.48 3.20
3526 3671 2.104331 GCGCGAAGGGAATCGAGA 59.896 61.111 12.10 0.00 45.48 4.04
3527 3672 2.962253 GGCGCGAAGGGAATCGAG 60.962 66.667 12.10 0.00 45.48 4.04
3528 3673 4.865761 CGGCGCGAAGGGAATCGA 62.866 66.667 12.10 0.00 45.48 3.59
3544 3689 3.316573 GAAGAGGAGGGGTGTGGCG 62.317 68.421 0.00 0.00 0.00 5.69
3545 3690 2.671682 GAAGAGGAGGGGTGTGGC 59.328 66.667 0.00 0.00 0.00 5.01
3546 3691 2.301738 GGGAAGAGGAGGGGTGTGG 61.302 68.421 0.00 0.00 0.00 4.17
3547 3692 2.301738 GGGGAAGAGGAGGGGTGTG 61.302 68.421 0.00 0.00 0.00 3.82
3548 3693 2.125225 GGGGAAGAGGAGGGGTGT 59.875 66.667 0.00 0.00 0.00 4.16
3549 3694 3.083997 CGGGGAAGAGGAGGGGTG 61.084 72.222 0.00 0.00 0.00 4.61
3550 3695 3.612607 ACGGGGAAGAGGAGGGGT 61.613 66.667 0.00 0.00 0.00 4.95
3551 3696 3.083997 CACGGGGAAGAGGAGGGG 61.084 72.222 0.00 0.00 0.00 4.79
3552 3697 3.787001 GCACGGGGAAGAGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
3553 3698 3.787001 GGCACGGGGAAGAGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
3570 3715 4.824515 AGAGGAGGGAGGCCGACG 62.825 72.222 0.00 0.00 0.00 5.12
3571 3716 3.151022 CAGAGGAGGGAGGCCGAC 61.151 72.222 0.00 0.00 0.00 4.79
3575 3720 3.844090 GACGCAGAGGAGGGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
3576 3721 2.043450 AGACGCAGAGGAGGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
3577 3722 1.077068 AGAGACGCAGAGGAGGGAG 60.077 63.158 0.00 0.00 0.00 4.30
3578 3723 1.077357 GAGAGACGCAGAGGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
3579 3724 2.124693 GGAGAGACGCAGAGGAGGG 61.125 68.421 0.00 0.00 0.00 4.30
3580 3725 1.077068 AGGAGAGACGCAGAGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
3581 3726 1.436195 CGAGGAGAGACGCAGAGGAG 61.436 65.000 0.00 0.00 0.00 3.69
3582 3727 1.450491 CGAGGAGAGACGCAGAGGA 60.450 63.158 0.00 0.00 0.00 3.71
3583 3728 1.711060 GACGAGGAGAGACGCAGAGG 61.711 65.000 0.00 0.00 0.00 3.69
3584 3729 1.719117 GACGAGGAGAGACGCAGAG 59.281 63.158 0.00 0.00 0.00 3.35
3585 3730 2.101233 CGACGAGGAGAGACGCAGA 61.101 63.158 0.00 0.00 0.00 4.26
3586 3731 2.401592 CGACGAGGAGAGACGCAG 59.598 66.667 0.00 0.00 0.00 5.18
3587 3732 3.125573 CCGACGAGGAGAGACGCA 61.126 66.667 0.00 0.00 45.00 5.24
3588 3733 3.098377 GACCGACGAGGAGAGACGC 62.098 68.421 8.56 0.00 45.00 5.19
3589 3734 1.090625 ATGACCGACGAGGAGAGACG 61.091 60.000 8.56 0.00 45.00 4.18
3590 3735 0.658897 GATGACCGACGAGGAGAGAC 59.341 60.000 8.56 0.00 45.00 3.36
3591 3736 0.810426 CGATGACCGACGAGGAGAGA 60.810 60.000 8.56 0.00 45.00 3.10
3592 3737 1.644372 CGATGACCGACGAGGAGAG 59.356 63.158 8.56 0.00 45.00 3.20
3593 3738 2.470362 GCGATGACCGACGAGGAGA 61.470 63.158 8.56 0.00 45.00 3.71
3594 3739 2.024871 GCGATGACCGACGAGGAG 59.975 66.667 8.56 0.00 45.00 3.69
3595 3740 2.437895 AGCGATGACCGACGAGGA 60.438 61.111 8.56 0.00 45.00 3.71
3597 3742 2.024871 GGAGCGATGACCGACGAG 59.975 66.667 0.00 0.00 41.76 4.18
3603 3748 2.024871 CGACTCGGAGCGATGACC 59.975 66.667 13.95 0.00 34.61 4.02
3604 3749 2.652496 GCGACTCGGAGCGATGAC 60.652 66.667 20.51 4.50 34.61 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.