Multiple sequence alignment - TraesCS4B01G277200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G277200 chr4B 100.000 2210 0 0 1 2210 558754852 558752643 0.000000e+00 4082
1 TraesCS4B01G277200 chr4B 90.783 217 17 3 1995 2210 559222993 559222779 9.990000e-74 287
2 TraesCS4B01G277200 chr4B 91.549 142 12 0 1932 2073 558942893 558942752 1.730000e-46 196
3 TraesCS4B01G277200 chr4B 91.473 129 10 1 2080 2208 559157672 559157545 2.260000e-40 176
4 TraesCS4B01G277200 chr4D 90.654 1637 80 31 105 1699 446750432 446748827 0.000000e+00 2108
5 TraesCS4B01G277200 chr4D 88.372 301 23 7 1700 1991 446748793 446748496 3.490000e-93 351
6 TraesCS4B01G277200 chr4D 80.374 214 39 3 1001 1213 487045739 487045950 2.270000e-35 159
7 TraesCS4B01G277200 chr4A 88.175 1277 57 27 23 1235 21024186 21025432 0.000000e+00 1435
8 TraesCS4B01G277200 chr4A 85.901 383 38 10 1838 2210 20632839 20633215 5.720000e-106 394
9 TraesCS4B01G277200 chr4A 77.629 447 65 28 1430 1859 21025634 21026062 2.840000e-59 239
10 TraesCS4B01G277200 chr4A 86.792 159 16 4 1905 2062 21027301 21027455 2.920000e-39 172
11 TraesCS4B01G277200 chr4A 87.943 141 9 4 1846 1986 21026084 21026216 2.270000e-35 159
12 TraesCS4B01G277200 chr4A 95.000 100 4 1 2111 2210 21043201 21043299 2.940000e-34 156
13 TraesCS4B01G277200 chr2A 88.341 223 22 3 990 1210 475582598 475582378 4.680000e-67 265
14 TraesCS4B01G277200 chr2A 82.564 195 32 2 1001 1194 679982444 679982251 1.050000e-38 171
15 TraesCS4B01G277200 chr2B 87.892 223 22 4 990 1210 423098338 423098119 7.830000e-65 257
16 TraesCS4B01G277200 chr2B 82.564 195 32 2 1001 1194 640085921 640085728 1.050000e-38 171
17 TraesCS4B01G277200 chr3D 81.159 207 37 2 1005 1210 540157949 540157744 4.880000e-37 165
18 TraesCS4B01G277200 chr3B 81.159 207 37 2 1005 1210 716302385 716302180 4.880000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G277200 chr4B 558752643 558754852 2209 True 4082.00 4082 100.00000 1 2210 1 chr4B.!!$R1 2209
1 TraesCS4B01G277200 chr4D 446748496 446750432 1936 True 1229.50 2108 89.51300 105 1991 2 chr4D.!!$R1 1886
2 TraesCS4B01G277200 chr4A 21024186 21027455 3269 False 501.25 1435 85.13475 23 2062 4 chr4A.!!$F3 2039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 432 0.03601 ATCGACCTCCCTGCTTGTTG 60.036 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 3531 0.248377 GGATCTCCGTTACCACGTCG 60.248 60.0 0.0 0.0 45.62 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.595311 TCAATGGATAGGTGGGCAGT 58.405 50.000 0.00 0.00 0.00 4.40
20 21 1.922447 TCAATGGATAGGTGGGCAGTT 59.078 47.619 0.00 0.00 0.00 3.16
21 22 2.311542 TCAATGGATAGGTGGGCAGTTT 59.688 45.455 0.00 0.00 0.00 2.66
25 26 2.378547 TGGATAGGTGGGCAGTTTTTCT 59.621 45.455 0.00 0.00 0.00 2.52
94 95 6.437865 GCCACGGCATGAGGTAACTAAAAC 62.438 50.000 2.36 0.00 45.11 2.43
231 233 2.027561 TCCATTGTGTAGAGAAACGGGG 60.028 50.000 0.00 0.00 0.00 5.73
238 240 5.263599 TGTGTAGAGAAACGGGGAGTATAA 58.736 41.667 0.00 0.00 0.00 0.98
244 265 7.625828 AGAGAAACGGGGAGTATAATTTTTG 57.374 36.000 0.00 0.00 0.00 2.44
268 289 3.065306 TCCGCACGGAAATGTCCT 58.935 55.556 9.81 0.00 42.44 3.85
319 345 6.035975 CACCGCACAAAGAAAAGAAAAGAAAT 59.964 34.615 0.00 0.00 0.00 2.17
320 346 6.035975 ACCGCACAAAGAAAAGAAAAGAAATG 59.964 34.615 0.00 0.00 0.00 2.32
322 348 7.201513 CCGCACAAAGAAAAGAAAAGAAATGAA 60.202 33.333 0.00 0.00 0.00 2.57
323 349 8.167985 CGCACAAAGAAAAGAAAAGAAATGAAA 58.832 29.630 0.00 0.00 0.00 2.69
324 350 9.992910 GCACAAAGAAAAGAAAAGAAATGAAAT 57.007 25.926 0.00 0.00 0.00 2.17
337 363 1.009829 ATGAAATGACTTCCGCTCGC 58.990 50.000 0.00 0.00 32.53 5.03
342 368 0.176680 ATGACTTCCGCTCGCTCATT 59.823 50.000 0.00 0.00 0.00 2.57
344 370 0.737715 GACTTCCGCTCGCTCATTGT 60.738 55.000 0.00 0.00 0.00 2.71
345 371 0.530744 ACTTCCGCTCGCTCATTGTA 59.469 50.000 0.00 0.00 0.00 2.41
351 377 2.156504 CCGCTCGCTCATTGTATTCATC 59.843 50.000 0.00 0.00 0.00 2.92
367 395 3.095912 TCATCGTCAGACCCCTTCTTA 57.904 47.619 0.00 0.00 28.96 2.10
390 418 9.922305 CTTATTGTGATCCTTTTCTTTATCGAC 57.078 33.333 0.00 0.00 0.00 4.20
396 424 4.101856 TCCTTTTCTTTATCGACCTCCCT 58.898 43.478 0.00 0.00 0.00 4.20
397 425 4.081087 TCCTTTTCTTTATCGACCTCCCTG 60.081 45.833 0.00 0.00 0.00 4.45
398 426 2.981859 TTCTTTATCGACCTCCCTGC 57.018 50.000 0.00 0.00 0.00 4.85
399 427 2.160721 TCTTTATCGACCTCCCTGCT 57.839 50.000 0.00 0.00 0.00 4.24
401 429 2.168521 TCTTTATCGACCTCCCTGCTTG 59.831 50.000 0.00 0.00 0.00 4.01
402 430 1.568504 TTATCGACCTCCCTGCTTGT 58.431 50.000 0.00 0.00 0.00 3.16
404 432 0.036010 ATCGACCTCCCTGCTTGTTG 60.036 55.000 0.00 0.00 0.00 3.33
423 466 1.864862 CCAAGCAGAGAACGTGCAG 59.135 57.895 0.00 0.00 43.82 4.41
519 570 4.649674 ACTACCACCATCACGTGAATCTAT 59.350 41.667 24.13 9.38 35.68 1.98
583 641 0.249073 AATAGTGGAGTGCTAGCGCG 60.249 55.000 21.89 0.00 39.65 6.86
683 743 1.361993 CCCCGCAAGAGATCGAGAG 59.638 63.158 0.00 0.00 43.02 3.20
719 779 0.734597 TACTGCATACGCACACACGG 60.735 55.000 0.00 0.00 45.36 4.94
838 910 0.326927 TTACTCCTTTCCCCAAGCCG 59.673 55.000 0.00 0.00 0.00 5.52
862 935 2.718563 CCTGCCTATTAAACCCAACGT 58.281 47.619 0.00 0.00 0.00 3.99
903 976 4.633565 CCTGCCAGTTCATTACTCTTCTTC 59.366 45.833 0.00 0.00 33.85 2.87
955 1043 0.890996 GTGTTGGGTGCAGCTAGCTT 60.891 55.000 16.46 0.00 45.94 3.74
992 1080 4.824515 AGGAGGAGCCGACCGGAG 62.825 72.222 9.46 0.51 43.43 4.63
1188 1286 1.958205 CTTCCTCATCGCCATCGGC 60.958 63.158 0.00 0.00 46.75 5.54
1235 1337 1.373497 ACTCTTCTTCGCCGCACAG 60.373 57.895 0.00 0.00 0.00 3.66
1293 1395 1.739562 CTGCCGAGCTTGTCTGTCC 60.740 63.158 0.00 0.00 0.00 4.02
1404 1521 2.203294 GGTTTGGTGGTCGGCTGT 60.203 61.111 0.00 0.00 0.00 4.40
1405 1522 2.551912 GGTTTGGTGGTCGGCTGTG 61.552 63.158 0.00 0.00 0.00 3.66
1428 1545 3.596214 GGTTTCGTTTGAGATGGCTCTA 58.404 45.455 0.00 0.00 41.84 2.43
1451 1587 8.097038 TCTATCTCTGGGATGAAATTTTATCCG 58.903 37.037 26.87 18.11 43.05 4.18
1454 1590 5.376625 TCTGGGATGAAATTTTATCCGGAG 58.623 41.667 26.87 24.15 43.05 4.63
1458 1594 6.062095 GGGATGAAATTTTATCCGGAGAAGA 58.938 40.000 26.87 8.18 43.05 2.87
1459 1595 6.546034 GGGATGAAATTTTATCCGGAGAAGAA 59.454 38.462 26.87 9.76 43.05 2.52
1463 1599 7.116075 TGAAATTTTATCCGGAGAAGAATGGA 58.884 34.615 11.98 0.00 34.45 3.41
1553 1689 6.861065 TTATTTCTCGCTTGATATCCAACC 57.139 37.500 0.00 0.00 0.00 3.77
1559 1695 4.584874 TCGCTTGATATCCAACCTTTTGA 58.415 39.130 0.00 0.00 34.24 2.69
1580 1716 7.750229 TTGATTGTTTTCTTCAGCTATCTGT 57.250 32.000 0.00 0.00 41.10 3.41
1592 1728 3.024547 AGCTATCTGTTGCTTCCGTAGA 58.975 45.455 0.00 0.00 35.86 2.59
1715 1884 6.511767 GCAGTCGTATAGCAGCAAATGTTAAT 60.512 38.462 0.00 0.00 0.00 1.40
1717 1886 6.202954 AGTCGTATAGCAGCAAATGTTAATCC 59.797 38.462 0.00 0.00 0.00 3.01
1718 1887 6.018262 GTCGTATAGCAGCAAATGTTAATCCA 60.018 38.462 0.00 0.00 0.00 3.41
1759 1928 3.735591 TGCACTAGTAGGTTTTGTCACC 58.264 45.455 1.45 0.00 37.04 4.02
1796 1965 1.202143 GCGGATCGTTTCATTTGGGTC 60.202 52.381 0.00 0.00 0.00 4.46
1800 1969 1.515081 TCGTTTCATTTGGGTCGGTC 58.485 50.000 0.00 0.00 0.00 4.79
1801 1970 1.202663 TCGTTTCATTTGGGTCGGTCA 60.203 47.619 0.00 0.00 0.00 4.02
1899 2112 0.753111 ATCCCCTTTGCTTCCATCGC 60.753 55.000 0.00 0.00 0.00 4.58
1909 2122 3.950794 TTCCATCGCCCGTCAGCAC 62.951 63.158 0.00 0.00 0.00 4.40
1916 2129 2.743928 CCCGTCAGCACCTTGAGC 60.744 66.667 0.00 0.00 0.00 4.26
1922 3290 0.460811 TCAGCACCTTGAGCGCATAG 60.461 55.000 11.47 2.99 37.01 2.23
1991 3359 0.661187 TCGAACCGACACACGCTAAC 60.661 55.000 0.00 0.00 41.07 2.34
2006 3374 2.490991 GCTAACAGTTCAAACCGGACT 58.509 47.619 9.46 0.00 0.00 3.85
2007 3375 2.479275 GCTAACAGTTCAAACCGGACTC 59.521 50.000 9.46 0.00 0.00 3.36
2009 3377 1.129058 ACAGTTCAAACCGGACTCCT 58.871 50.000 9.46 0.00 0.00 3.69
2010 3378 2.322658 ACAGTTCAAACCGGACTCCTA 58.677 47.619 9.46 0.00 0.00 2.94
2011 3379 2.036862 ACAGTTCAAACCGGACTCCTAC 59.963 50.000 9.46 0.00 0.00 3.18
2013 3381 3.508793 CAGTTCAAACCGGACTCCTACTA 59.491 47.826 9.46 0.00 0.00 1.82
2025 3394 6.313164 CCGGACTCCTACTAAAAAGTCAATTC 59.687 42.308 0.00 0.00 39.90 2.17
2027 3396 7.095270 GGACTCCTACTAAAAAGTCAATTCGA 58.905 38.462 4.02 0.00 39.90 3.71
2030 3399 7.387122 ACTCCTACTAAAAAGTCAATTCGAACC 59.613 37.037 0.00 0.00 0.00 3.62
2032 3401 4.779987 ACTAAAAAGTCAATTCGAACCGC 58.220 39.130 0.00 0.00 0.00 5.68
2036 3405 1.148310 AGTCAATTCGAACCGCACAG 58.852 50.000 0.00 0.00 0.00 3.66
2041 3410 2.930040 CAATTCGAACCGCACAGACTAT 59.070 45.455 0.00 0.00 0.00 2.12
2051 3420 3.617263 CCGCACAGACTATTCAGGTTAAC 59.383 47.826 0.00 0.00 0.00 2.01
2064 3433 2.783135 AGGTTAACCTGACTGCACATG 58.217 47.619 26.57 0.00 46.55 3.21
2065 3434 2.106511 AGGTTAACCTGACTGCACATGT 59.893 45.455 26.57 0.00 46.55 3.21
2066 3435 3.326588 AGGTTAACCTGACTGCACATGTA 59.673 43.478 26.57 0.00 46.55 2.29
2067 3436 3.435671 GGTTAACCTGACTGCACATGTAC 59.564 47.826 17.83 0.00 0.00 2.90
2068 3437 2.928801 AACCTGACTGCACATGTACA 57.071 45.000 0.00 0.00 0.00 2.90
2069 3438 3.423539 AACCTGACTGCACATGTACAT 57.576 42.857 1.41 1.41 0.00 2.29
2070 3439 4.551702 AACCTGACTGCACATGTACATA 57.448 40.909 8.32 0.00 0.00 2.29
2071 3440 4.760530 ACCTGACTGCACATGTACATAT 57.239 40.909 8.32 0.00 0.00 1.78
2072 3441 5.869649 ACCTGACTGCACATGTACATATA 57.130 39.130 8.32 0.00 0.00 0.86
2073 3442 5.601662 ACCTGACTGCACATGTACATATAC 58.398 41.667 8.32 1.21 0.00 1.47
2074 3443 5.363868 ACCTGACTGCACATGTACATATACT 59.636 40.000 8.32 0.00 32.00 2.12
2075 3444 6.549736 ACCTGACTGCACATGTACATATACTA 59.450 38.462 8.32 0.00 32.00 1.82
2076 3445 7.233553 ACCTGACTGCACATGTACATATACTAT 59.766 37.037 8.32 0.00 32.00 2.12
2077 3446 7.543520 CCTGACTGCACATGTACATATACTATG 59.456 40.741 8.32 0.00 32.00 2.23
2078 3447 6.868339 TGACTGCACATGTACATATACTATGC 59.132 38.462 8.32 11.59 35.96 3.14
2079 3448 6.758254 ACTGCACATGTACATATACTATGCA 58.242 36.000 8.32 14.99 39.57 3.96
2080 3449 7.389232 ACTGCACATGTACATATACTATGCAT 58.611 34.615 18.92 3.79 40.30 3.96
2081 3450 8.531146 ACTGCACATGTACATATACTATGCATA 58.469 33.333 18.92 6.20 40.30 3.14
2082 3451 8.702163 TGCACATGTACATATACTATGCATAC 57.298 34.615 8.32 0.00 38.27 2.39
2083 3452 7.487829 TGCACATGTACATATACTATGCATACG 59.512 37.037 8.32 2.13 38.27 3.06
2084 3453 7.700656 GCACATGTACATATACTATGCATACGA 59.299 37.037 8.32 0.00 35.71 3.43
2085 3454 9.226345 CACATGTACATATACTATGCATACGAG 57.774 37.037 8.32 0.00 32.00 4.18
2086 3455 9.174166 ACATGTACATATACTATGCATACGAGA 57.826 33.333 8.32 0.00 32.00 4.04
2091 3460 8.449085 ACATATACTATGCATACGAGAAAACG 57.551 34.615 1.16 0.00 39.31 3.60
2092 3461 8.294577 ACATATACTATGCATACGAGAAAACGA 58.705 33.333 1.16 0.00 37.03 3.85
2093 3462 9.124807 CATATACTATGCATACGAGAAAACGAA 57.875 33.333 1.16 0.00 37.03 3.85
2094 3463 9.856488 ATATACTATGCATACGAGAAAACGAAT 57.144 29.630 1.16 0.00 37.03 3.34
2096 3465 7.390918 ACTATGCATACGAGAAAACGAATAC 57.609 36.000 1.16 0.00 37.03 1.89
2097 3466 6.976349 ACTATGCATACGAGAAAACGAATACA 59.024 34.615 1.16 0.00 37.03 2.29
2098 3467 6.656314 ATGCATACGAGAAAACGAATACAA 57.344 33.333 0.00 0.00 37.03 2.41
2099 3468 6.089920 TGCATACGAGAAAACGAATACAAG 57.910 37.500 0.00 0.00 37.03 3.16
2100 3469 5.865013 TGCATACGAGAAAACGAATACAAGA 59.135 36.000 0.00 0.00 37.03 3.02
2101 3470 6.176453 GCATACGAGAAAACGAATACAAGAC 58.824 40.000 0.00 0.00 37.03 3.01
2102 3471 4.880760 ACGAGAAAACGAATACAAGACG 57.119 40.909 0.00 0.00 37.03 4.18
2103 3472 4.539870 ACGAGAAAACGAATACAAGACGA 58.460 39.130 0.00 0.00 37.03 4.20
2104 3473 5.159209 ACGAGAAAACGAATACAAGACGAT 58.841 37.500 0.00 0.00 37.03 3.73
2105 3474 5.060569 ACGAGAAAACGAATACAAGACGATG 59.939 40.000 0.00 0.00 37.03 3.84
2106 3475 5.285370 CGAGAAAACGAATACAAGACGATGA 59.715 40.000 0.00 0.00 35.09 2.92
2107 3476 6.020599 CGAGAAAACGAATACAAGACGATGAT 60.021 38.462 0.00 0.00 35.09 2.45
2108 3477 7.223058 AGAAAACGAATACAAGACGATGATC 57.777 36.000 0.00 0.00 0.00 2.92
2109 3478 5.621635 AAACGAATACAAGACGATGATCG 57.378 39.130 14.01 14.01 46.93 3.69
2110 3479 4.547406 ACGAATACAAGACGATGATCGA 57.453 40.909 22.88 0.00 43.74 3.59
2111 3480 5.109662 ACGAATACAAGACGATGATCGAT 57.890 39.130 22.88 6.67 43.74 3.59
2112 3481 6.237313 ACGAATACAAGACGATGATCGATA 57.763 37.500 22.88 6.00 43.74 2.92
2113 3482 6.078479 ACGAATACAAGACGATGATCGATAC 58.922 40.000 22.88 11.85 43.74 2.24
2114 3483 5.223297 CGAATACAAGACGATGATCGATACG 59.777 44.000 22.88 9.39 43.74 3.06
2115 3484 5.857822 ATACAAGACGATGATCGATACGA 57.142 39.130 22.88 2.37 43.74 3.43
2117 3486 4.467735 ACAAGACGATGATCGATACGATG 58.532 43.478 22.88 16.25 47.00 3.84
2118 3487 4.023963 ACAAGACGATGATCGATACGATGT 60.024 41.667 22.88 16.76 47.00 3.06
2119 3488 4.329296 AGACGATGATCGATACGATGTC 57.671 45.455 22.88 14.39 47.00 3.06
2120 3489 3.084988 GACGATGATCGATACGATGTCG 58.915 50.000 22.88 23.32 47.00 4.35
2121 3490 1.834771 CGATGATCGATACGATGTCGC 59.165 52.381 9.62 0.00 47.00 5.19
2122 3491 2.724839 CGATGATCGATACGATGTCGCA 60.725 50.000 9.62 3.95 47.00 5.10
2123 3492 2.316119 TGATCGATACGATGTCGCAG 57.684 50.000 11.26 0.00 47.00 5.18
2124 3493 0.978385 GATCGATACGATGTCGCAGC 59.022 55.000 11.26 0.00 47.00 5.25
2125 3494 0.387367 ATCGATACGATGTCGCAGCC 60.387 55.000 0.00 0.00 45.24 4.85
2126 3495 2.357543 CGATACGATGTCGCAGCCG 61.358 63.158 1.77 0.00 44.43 5.52
2127 3496 2.016704 GATACGATGTCGCAGCCGG 61.017 63.158 0.00 0.00 44.43 6.13
2128 3497 3.499929 ATACGATGTCGCAGCCGGG 62.500 63.158 2.18 0.00 44.43 5.73
2145 3514 3.641986 GCGAACGTGCCACCGAAA 61.642 61.111 0.00 0.00 0.00 3.46
2146 3515 3.015677 CGAACGTGCCACCGAAAA 58.984 55.556 0.00 0.00 0.00 2.29
2147 3516 1.368374 CGAACGTGCCACCGAAAAC 60.368 57.895 0.00 0.00 0.00 2.43
2148 3517 1.722677 GAACGTGCCACCGAAAACA 59.277 52.632 0.00 0.00 0.00 2.83
2149 3518 0.590481 GAACGTGCCACCGAAAACAC 60.590 55.000 0.00 0.00 0.00 3.32
2151 3520 3.412061 GTGCCACCGAAAACACGA 58.588 55.556 0.00 0.00 35.09 4.35
2152 3521 1.010462 GTGCCACCGAAAACACGAC 60.010 57.895 0.00 0.00 35.09 4.34
2153 3522 1.153329 TGCCACCGAAAACACGACT 60.153 52.632 0.00 0.00 35.09 4.18
2154 3523 1.155424 TGCCACCGAAAACACGACTC 61.155 55.000 0.00 0.00 35.09 3.36
2155 3524 0.878961 GCCACCGAAAACACGACTCT 60.879 55.000 0.00 0.00 35.09 3.24
2156 3525 0.859232 CCACCGAAAACACGACTCTG 59.141 55.000 0.00 0.00 35.09 3.35
2157 3526 0.859232 CACCGAAAACACGACTCTGG 59.141 55.000 0.00 0.00 35.09 3.86
2158 3527 0.748450 ACCGAAAACACGACTCTGGA 59.252 50.000 0.00 0.00 35.09 3.86
2159 3528 1.137513 CCGAAAACACGACTCTGGAC 58.862 55.000 0.00 0.00 35.09 4.02
2160 3529 0.776451 CGAAAACACGACTCTGGACG 59.224 55.000 0.00 0.00 36.75 4.79
2161 3530 1.598676 CGAAAACACGACTCTGGACGA 60.599 52.381 0.00 0.00 34.97 4.20
2162 3531 1.785430 GAAAACACGACTCTGGACGAC 59.215 52.381 0.00 0.00 34.97 4.34
2163 3532 0.317603 AAACACGACTCTGGACGACG 60.318 55.000 0.00 0.00 34.97 5.12
2164 3533 1.162181 AACACGACTCTGGACGACGA 61.162 55.000 0.00 0.00 34.97 4.20
2165 3534 1.154450 CACGACTCTGGACGACGAC 60.154 63.158 0.00 0.00 34.97 4.34
2166 3535 2.096030 CGACTCTGGACGACGACG 59.904 66.667 5.58 5.58 45.75 5.12
2183 3552 3.642901 CGTGGTAACGGAGATCCTG 57.357 57.895 0.00 0.00 46.25 3.86
2184 3553 0.527817 CGTGGTAACGGAGATCCTGC 60.528 60.000 0.00 0.00 46.25 4.85
2185 3554 0.824759 GTGGTAACGGAGATCCTGCT 59.175 55.000 0.00 0.00 42.51 4.24
2186 3555 0.824109 TGGTAACGGAGATCCTGCTG 59.176 55.000 0.00 0.00 42.51 4.41
2187 3556 1.112113 GGTAACGGAGATCCTGCTGA 58.888 55.000 0.00 0.00 0.00 4.26
2188 3557 1.067821 GGTAACGGAGATCCTGCTGAG 59.932 57.143 0.00 0.00 0.00 3.35
2189 3558 1.067821 GTAACGGAGATCCTGCTGAGG 59.932 57.143 0.00 0.00 41.39 3.86
2190 3559 1.965754 AACGGAGATCCTGCTGAGGC 61.966 60.000 0.00 0.00 39.57 4.70
2191 3560 2.132996 CGGAGATCCTGCTGAGGCT 61.133 63.158 0.00 0.00 39.57 4.58
2192 3561 1.446791 GGAGATCCTGCTGAGGCTG 59.553 63.158 0.00 0.00 39.57 4.85
2193 3562 1.227615 GAGATCCTGCTGAGGCTGC 60.228 63.158 0.00 0.00 39.57 5.25
2194 3563 2.203181 GATCCTGCTGAGGCTGCC 60.203 66.667 11.65 11.65 39.57 4.85
2195 3564 4.172512 ATCCTGCTGAGGCTGCCG 62.173 66.667 13.96 0.00 39.57 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.595311 ACTGCCCACCTATCCATTGA 58.405 50.000 0.00 0.00 0.00 2.57
1 2 2.442236 AACTGCCCACCTATCCATTG 57.558 50.000 0.00 0.00 0.00 2.82
2 3 3.473113 AAAACTGCCCACCTATCCATT 57.527 42.857 0.00 0.00 0.00 3.16
3 4 3.011708 AGAAAAACTGCCCACCTATCCAT 59.988 43.478 0.00 0.00 0.00 3.41
4 5 2.378547 AGAAAAACTGCCCACCTATCCA 59.621 45.455 0.00 0.00 0.00 3.41
5 6 2.755103 CAGAAAAACTGCCCACCTATCC 59.245 50.000 0.00 0.00 39.86 2.59
6 7 3.686016 TCAGAAAAACTGCCCACCTATC 58.314 45.455 0.00 0.00 45.38 2.08
7 8 3.806949 TCAGAAAAACTGCCCACCTAT 57.193 42.857 0.00 0.00 45.38 2.57
8 9 3.181434 ACATCAGAAAAACTGCCCACCTA 60.181 43.478 0.00 0.00 45.38 3.08
9 10 2.242043 CATCAGAAAAACTGCCCACCT 58.758 47.619 0.00 0.00 45.38 4.00
10 11 1.963515 ACATCAGAAAAACTGCCCACC 59.036 47.619 0.00 0.00 45.38 4.61
11 12 2.863704 GCACATCAGAAAAACTGCCCAC 60.864 50.000 0.00 0.00 45.38 4.61
12 13 1.340889 GCACATCAGAAAAACTGCCCA 59.659 47.619 0.00 0.00 45.38 5.36
13 14 1.340889 TGCACATCAGAAAAACTGCCC 59.659 47.619 0.00 0.00 45.38 5.36
14 15 2.798976 TGCACATCAGAAAAACTGCC 57.201 45.000 0.00 0.00 45.38 4.85
15 16 2.991190 CCATGCACATCAGAAAAACTGC 59.009 45.455 0.00 0.00 45.38 4.40
16 17 4.247267 ACCATGCACATCAGAAAAACTG 57.753 40.909 0.00 0.00 46.97 3.16
17 18 4.624015 CAACCATGCACATCAGAAAAACT 58.376 39.130 0.00 0.00 0.00 2.66
18 19 4.977741 CAACCATGCACATCAGAAAAAC 57.022 40.909 0.00 0.00 0.00 2.43
49 50 4.613031 GCTACTCATGTTGTTTCTTTTCGC 59.387 41.667 0.00 0.00 0.00 4.70
51 52 5.915196 GTGGCTACTCATGTTGTTTCTTTTC 59.085 40.000 0.00 0.00 0.00 2.29
56 57 2.159627 CCGTGGCTACTCATGTTGTTTC 59.840 50.000 0.00 0.00 0.00 2.78
101 102 1.331756 CGACACCATCTGGCATTTAGC 59.668 52.381 0.00 0.00 44.65 3.09
102 103 1.942657 CCGACACCATCTGGCATTTAG 59.057 52.381 0.00 0.00 39.32 1.85
103 104 1.280710 ACCGACACCATCTGGCATTTA 59.719 47.619 0.00 0.00 39.32 1.40
231 233 5.971792 GCGGAAAGGAGCAAAAATTATACTC 59.028 40.000 0.00 0.00 0.00 2.59
238 240 1.335872 CGTGCGGAAAGGAGCAAAAAT 60.336 47.619 0.00 0.00 45.61 1.82
263 284 2.553028 GGGATGTGAAGAAAGCAGGACA 60.553 50.000 0.00 0.00 0.00 4.02
268 289 1.887956 GCAGGGGATGTGAAGAAAGCA 60.888 52.381 0.00 0.00 0.00 3.91
319 345 0.037326 AGCGAGCGGAAGTCATTTCA 60.037 50.000 0.00 0.00 37.54 2.69
320 346 0.647925 GAGCGAGCGGAAGTCATTTC 59.352 55.000 0.00 0.00 34.93 2.17
322 348 0.176680 ATGAGCGAGCGGAAGTCATT 59.823 50.000 0.00 0.00 0.00 2.57
323 349 0.176680 AATGAGCGAGCGGAAGTCAT 59.823 50.000 0.00 0.00 0.00 3.06
324 350 0.737367 CAATGAGCGAGCGGAAGTCA 60.737 55.000 0.00 0.00 0.00 3.41
325 351 0.737715 ACAATGAGCGAGCGGAAGTC 60.738 55.000 0.00 0.00 0.00 3.01
326 352 0.530744 TACAATGAGCGAGCGGAAGT 59.469 50.000 0.00 0.00 0.00 3.01
327 353 1.858091 ATACAATGAGCGAGCGGAAG 58.142 50.000 0.00 0.00 0.00 3.46
337 363 4.747108 GGGTCTGACGATGAATACAATGAG 59.253 45.833 1.07 0.00 0.00 2.90
342 368 2.747177 AGGGGTCTGACGATGAATACA 58.253 47.619 1.07 0.00 0.00 2.29
344 370 3.643237 AGAAGGGGTCTGACGATGAATA 58.357 45.455 1.07 0.00 34.29 1.75
345 371 2.472029 AGAAGGGGTCTGACGATGAAT 58.528 47.619 1.07 0.00 34.29 2.57
351 377 3.056107 TCACAATAAGAAGGGGTCTGACG 60.056 47.826 1.07 0.00 36.40 4.35
367 395 7.112779 AGGTCGATAAAGAAAAGGATCACAAT 58.887 34.615 0.00 0.00 0.00 2.71
401 429 0.040958 CACGTTCTCTGCTTGGCAAC 60.041 55.000 0.00 0.00 38.41 4.17
402 430 1.785041 GCACGTTCTCTGCTTGGCAA 61.785 55.000 0.00 0.00 38.41 4.52
404 432 2.180131 CTGCACGTTCTCTGCTTGGC 62.180 60.000 0.00 0.00 35.53 4.52
423 466 3.440173 TGAAATCCAAAATCTGTCGCTCC 59.560 43.478 0.00 0.00 0.00 4.70
519 570 2.663478 CGTCGCGCAAACAAGGCTA 61.663 57.895 8.75 0.00 0.00 3.93
678 738 1.134175 GTGGAAAGGCTCTCTCTCTCG 59.866 57.143 0.00 0.00 0.00 4.04
683 743 2.167487 CAGTAGGTGGAAAGGCTCTCTC 59.833 54.545 0.00 0.00 0.00 3.20
838 910 3.012934 TGGGTTTAATAGGCAGGCTTC 57.987 47.619 0.00 0.00 0.00 3.86
862 935 2.834549 CAGGGAAGCAGAGGAAGAGTAA 59.165 50.000 0.00 0.00 0.00 2.24
903 976 0.674895 CAAAACTGGGAGCGAGGAGG 60.675 60.000 0.00 0.00 0.00 4.30
955 1043 1.746615 GATCCGCTTGCTTGCTCCA 60.747 57.895 0.00 0.00 0.00 3.86
969 1057 2.123251 TCGGCTCCTCCTGGATCC 60.123 66.667 4.20 4.20 43.41 3.36
989 1077 4.899239 CCGCCATCTCCGCACTCC 62.899 72.222 0.00 0.00 0.00 3.85
990 1078 3.838271 TCCGCCATCTCCGCACTC 61.838 66.667 0.00 0.00 0.00 3.51
991 1079 4.148825 GTCCGCCATCTCCGCACT 62.149 66.667 0.00 0.00 0.00 4.40
992 1080 4.148825 AGTCCGCCATCTCCGCAC 62.149 66.667 0.00 0.00 0.00 5.34
993 1081 4.147449 CAGTCCGCCATCTCCGCA 62.147 66.667 0.00 0.00 0.00 5.69
1188 1286 2.278596 CCGGCGTAGATGTGGACG 60.279 66.667 6.01 0.00 41.97 4.79
1404 1521 1.904287 CCATCTCAAACGAAACCCCA 58.096 50.000 0.00 0.00 0.00 4.96
1405 1522 0.526211 GCCATCTCAAACGAAACCCC 59.474 55.000 0.00 0.00 0.00 4.95
1428 1545 6.006449 CCGGATAAAATTTCATCCCAGAGAT 58.994 40.000 13.83 0.00 37.96 2.75
1451 1587 5.464168 CAACAACAACATCCATTCTTCTCC 58.536 41.667 0.00 0.00 0.00 3.71
1454 1590 4.874970 AGCAACAACAACATCCATTCTTC 58.125 39.130 0.00 0.00 0.00 2.87
1458 1594 3.006110 CAGGAGCAACAACAACATCCATT 59.994 43.478 0.00 0.00 0.00 3.16
1459 1595 2.559668 CAGGAGCAACAACAACATCCAT 59.440 45.455 0.00 0.00 0.00 3.41
1463 1599 2.481795 GCAACAGGAGCAACAACAACAT 60.482 45.455 0.00 0.00 0.00 2.71
1548 1684 6.238184 GCTGAAGAAAACAATCAAAAGGTTGG 60.238 38.462 0.00 0.00 35.29 3.77
1553 1689 9.125906 CAGATAGCTGAAGAAAACAATCAAAAG 57.874 33.333 0.40 0.00 45.17 2.27
1559 1695 6.208204 AGCAACAGATAGCTGAAGAAAACAAT 59.792 34.615 16.32 0.00 45.17 2.71
1695 1831 6.299023 TGGATTAACATTTGCTGCTATACG 57.701 37.500 0.00 0.00 0.00 3.06
1715 1884 1.688735 CTACGGGCAGATTCTGATGGA 59.311 52.381 17.87 1.81 32.44 3.41
1717 1886 1.069823 AGCTACGGGCAGATTCTGATG 59.930 52.381 17.87 8.06 44.79 3.07
1718 1887 1.418334 AGCTACGGGCAGATTCTGAT 58.582 50.000 17.87 2.13 44.79 2.90
1759 1928 2.255252 CGAAGTGCGCAAAAGGGG 59.745 61.111 14.00 0.00 0.00 4.79
1899 2112 2.743928 GCTCAAGGTGCTGACGGG 60.744 66.667 0.00 0.00 0.00 5.28
1922 3290 1.860950 TCGAAGCTGCTTAATCGCATC 59.139 47.619 15.95 0.00 39.52 3.91
1991 3359 2.299297 AGTAGGAGTCCGGTTTGAACTG 59.701 50.000 2.76 0.00 35.04 3.16
2006 3374 6.366877 CGGTTCGAATTGACTTTTTAGTAGGA 59.633 38.462 0.00 0.00 0.00 2.94
2007 3375 6.531439 CGGTTCGAATTGACTTTTTAGTAGG 58.469 40.000 0.00 0.00 0.00 3.18
2009 3377 5.466058 TGCGGTTCGAATTGACTTTTTAGTA 59.534 36.000 0.00 0.00 0.00 1.82
2010 3378 4.273969 TGCGGTTCGAATTGACTTTTTAGT 59.726 37.500 0.00 0.00 0.00 2.24
2011 3379 4.611366 GTGCGGTTCGAATTGACTTTTTAG 59.389 41.667 0.00 0.00 0.00 1.85
2013 3381 3.181495 TGTGCGGTTCGAATTGACTTTTT 60.181 39.130 0.00 0.00 0.00 1.94
2025 3394 1.920574 CTGAATAGTCTGTGCGGTTCG 59.079 52.381 0.00 0.00 0.00 3.95
2027 3396 1.623811 ACCTGAATAGTCTGTGCGGTT 59.376 47.619 0.00 0.00 0.00 4.44
2030 3399 3.617263 GGTTAACCTGAATAGTCTGTGCG 59.383 47.826 17.83 0.00 0.00 5.34
2051 3420 5.847304 AGTATATGTACATGTGCAGTCAGG 58.153 41.667 21.32 0.00 33.09 3.86
2058 3427 7.700656 TCGTATGCATAGTATATGTACATGTGC 59.299 37.037 18.81 15.07 36.30 4.57
2065 3434 9.550811 CGTTTTCTCGTATGCATAGTATATGTA 57.449 33.333 6.67 0.00 0.00 2.29
2066 3435 8.294577 TCGTTTTCTCGTATGCATAGTATATGT 58.705 33.333 6.67 0.00 0.00 2.29
2067 3436 8.669394 TCGTTTTCTCGTATGCATAGTATATG 57.331 34.615 6.67 0.00 0.00 1.78
2068 3437 9.856488 ATTCGTTTTCTCGTATGCATAGTATAT 57.144 29.630 6.67 0.00 0.00 0.86
2070 3439 9.125906 GTATTCGTTTTCTCGTATGCATAGTAT 57.874 33.333 6.67 0.00 0.00 2.12
2071 3440 8.130469 TGTATTCGTTTTCTCGTATGCATAGTA 58.870 33.333 6.67 0.00 31.54 1.82
2072 3441 6.976349 TGTATTCGTTTTCTCGTATGCATAGT 59.024 34.615 6.67 0.00 31.54 2.12
2073 3442 7.389603 TGTATTCGTTTTCTCGTATGCATAG 57.610 36.000 6.67 0.00 31.54 2.23
2074 3443 7.703197 TCTTGTATTCGTTTTCTCGTATGCATA 59.297 33.333 1.16 1.16 34.73 3.14
2075 3444 6.533723 TCTTGTATTCGTTTTCTCGTATGCAT 59.466 34.615 3.79 3.79 34.73 3.96
2076 3445 5.865013 TCTTGTATTCGTTTTCTCGTATGCA 59.135 36.000 0.00 0.00 33.55 3.96
2077 3446 6.176453 GTCTTGTATTCGTTTTCTCGTATGC 58.824 40.000 0.00 0.00 0.00 3.14
2078 3447 6.249893 TCGTCTTGTATTCGTTTTCTCGTATG 59.750 38.462 0.00 0.00 0.00 2.39
2079 3448 6.317088 TCGTCTTGTATTCGTTTTCTCGTAT 58.683 36.000 0.00 0.00 0.00 3.06
2080 3449 5.688823 TCGTCTTGTATTCGTTTTCTCGTA 58.311 37.500 0.00 0.00 0.00 3.43
2081 3450 4.539870 TCGTCTTGTATTCGTTTTCTCGT 58.460 39.130 0.00 0.00 0.00 4.18
2082 3451 5.285370 TCATCGTCTTGTATTCGTTTTCTCG 59.715 40.000 0.00 0.00 0.00 4.04
2083 3452 6.627690 TCATCGTCTTGTATTCGTTTTCTC 57.372 37.500 0.00 0.00 0.00 2.87
2084 3453 6.020599 CGATCATCGTCTTGTATTCGTTTTCT 60.021 38.462 0.00 0.00 34.72 2.52
2085 3454 6.020916 TCGATCATCGTCTTGTATTCGTTTTC 60.021 38.462 7.00 0.00 41.35 2.29
2086 3455 5.803461 TCGATCATCGTCTTGTATTCGTTTT 59.197 36.000 7.00 0.00 41.35 2.43
2087 3456 5.337554 TCGATCATCGTCTTGTATTCGTTT 58.662 37.500 7.00 0.00 41.35 3.60
2088 3457 4.916870 TCGATCATCGTCTTGTATTCGTT 58.083 39.130 7.00 0.00 41.35 3.85
2089 3458 4.547406 TCGATCATCGTCTTGTATTCGT 57.453 40.909 7.00 0.00 41.35 3.85
2090 3459 5.223297 CGTATCGATCATCGTCTTGTATTCG 59.777 44.000 7.00 0.00 41.35 3.34
2091 3460 6.304882 TCGTATCGATCATCGTCTTGTATTC 58.695 40.000 7.00 0.00 41.35 1.75
2092 3461 6.237313 TCGTATCGATCATCGTCTTGTATT 57.763 37.500 7.00 0.00 41.35 1.89
2093 3462 5.857822 TCGTATCGATCATCGTCTTGTAT 57.142 39.130 7.00 0.00 41.35 2.29
2094 3463 5.178809 ACATCGTATCGATCATCGTCTTGTA 59.821 40.000 7.00 0.00 45.19 2.41
2095 3464 4.023963 ACATCGTATCGATCATCGTCTTGT 60.024 41.667 7.00 8.80 45.19 3.16
2096 3465 4.467735 ACATCGTATCGATCATCGTCTTG 58.532 43.478 7.00 8.27 45.19 3.02
2097 3466 4.666908 CGACATCGTATCGATCATCGTCTT 60.667 45.833 7.00 0.00 45.19 3.01
2098 3467 3.181529 CGACATCGTATCGATCATCGTCT 60.182 47.826 7.00 0.00 45.19 4.18
2099 3468 3.084988 CGACATCGTATCGATCATCGTC 58.915 50.000 7.00 14.02 45.19 4.20
2100 3469 2.725145 GCGACATCGTATCGATCATCGT 60.725 50.000 23.30 12.03 45.19 3.73
2101 3470 1.834771 GCGACATCGTATCGATCATCG 59.165 52.381 20.76 20.76 45.19 3.84
2102 3471 2.843063 CTGCGACATCGTATCGATCATC 59.157 50.000 0.00 3.06 45.19 2.92
2103 3472 2.856398 CTGCGACATCGTATCGATCAT 58.144 47.619 0.00 0.00 45.19 2.45
2104 3473 1.663161 GCTGCGACATCGTATCGATCA 60.663 52.381 0.00 0.00 45.19 2.92
2105 3474 0.978385 GCTGCGACATCGTATCGATC 59.022 55.000 0.00 0.00 45.19 3.69
2107 3476 1.008881 GGCTGCGACATCGTATCGA 60.009 57.895 2.85 0.00 42.25 3.59
2108 3477 2.357543 CGGCTGCGACATCGTATCG 61.358 63.158 2.85 2.54 42.22 2.92
2109 3478 2.016704 CCGGCTGCGACATCGTATC 61.017 63.158 2.85 0.00 42.22 2.24
2110 3479 2.027605 CCGGCTGCGACATCGTAT 59.972 61.111 2.85 0.00 42.22 3.06
2111 3480 4.201679 CCCGGCTGCGACATCGTA 62.202 66.667 0.00 0.00 42.22 3.43
2128 3497 3.170810 TTTTCGGTGGCACGTTCGC 62.171 57.895 12.17 0.00 34.94 4.70
2129 3498 1.368374 GTTTTCGGTGGCACGTTCG 60.368 57.895 12.17 9.97 34.94 3.95
2130 3499 0.590481 GTGTTTTCGGTGGCACGTTC 60.590 55.000 12.17 0.00 34.94 3.95
2131 3500 1.430228 GTGTTTTCGGTGGCACGTT 59.570 52.632 12.17 0.00 34.94 3.99
2132 3501 2.815298 CGTGTTTTCGGTGGCACGT 61.815 57.895 12.17 0.00 46.30 4.49
2133 3502 2.052590 CGTGTTTTCGGTGGCACG 60.053 61.111 12.17 7.33 46.28 5.34
2134 3503 1.010462 GTCGTGTTTTCGGTGGCAC 60.010 57.895 9.70 9.70 0.00 5.01
2135 3504 1.153329 AGTCGTGTTTTCGGTGGCA 60.153 52.632 0.00 0.00 0.00 4.92
2136 3505 0.878961 AGAGTCGTGTTTTCGGTGGC 60.879 55.000 0.00 0.00 0.00 5.01
2137 3506 0.859232 CAGAGTCGTGTTTTCGGTGG 59.141 55.000 0.00 0.00 0.00 4.61
2138 3507 0.859232 CCAGAGTCGTGTTTTCGGTG 59.141 55.000 0.00 0.00 0.00 4.94
2139 3508 0.748450 TCCAGAGTCGTGTTTTCGGT 59.252 50.000 0.00 0.00 0.00 4.69
2140 3509 1.137513 GTCCAGAGTCGTGTTTTCGG 58.862 55.000 0.00 0.00 0.00 4.30
2141 3510 0.776451 CGTCCAGAGTCGTGTTTTCG 59.224 55.000 0.00 0.00 0.00 3.46
2142 3511 1.785430 GTCGTCCAGAGTCGTGTTTTC 59.215 52.381 0.00 0.00 0.00 2.29
2143 3512 1.849097 GTCGTCCAGAGTCGTGTTTT 58.151 50.000 0.00 0.00 0.00 2.43
2144 3513 0.317603 CGTCGTCCAGAGTCGTGTTT 60.318 55.000 0.00 0.00 0.00 2.83
2145 3514 1.162181 TCGTCGTCCAGAGTCGTGTT 61.162 55.000 0.00 0.00 0.00 3.32
2146 3515 1.596203 TCGTCGTCCAGAGTCGTGT 60.596 57.895 0.00 0.00 0.00 4.49
2147 3516 1.154450 GTCGTCGTCCAGAGTCGTG 60.154 63.158 0.00 0.00 0.00 4.35
2148 3517 2.665395 CGTCGTCGTCCAGAGTCGT 61.665 63.158 0.00 0.00 0.00 4.34
2149 3518 2.096030 CGTCGTCGTCCAGAGTCG 59.904 66.667 0.00 0.00 0.00 4.18
2159 3528 1.510623 CTCCGTTACCACGTCGTCG 60.511 63.158 0.00 0.00 45.62 5.12
2160 3529 0.449388 ATCTCCGTTACCACGTCGTC 59.551 55.000 0.00 0.00 45.62 4.20
2161 3530 0.449388 GATCTCCGTTACCACGTCGT 59.551 55.000 0.00 0.00 45.62 4.34
2162 3531 0.248377 GGATCTCCGTTACCACGTCG 60.248 60.000 0.00 0.00 45.62 5.12
2163 3532 1.101331 AGGATCTCCGTTACCACGTC 58.899 55.000 0.00 0.00 45.62 4.34
2164 3533 0.815734 CAGGATCTCCGTTACCACGT 59.184 55.000 0.00 0.00 45.62 4.49
2165 3534 0.527817 GCAGGATCTCCGTTACCACG 60.528 60.000 0.00 0.00 46.71 4.94
2166 3535 0.824759 AGCAGGATCTCCGTTACCAC 59.175 55.000 0.00 0.00 42.08 4.16
2167 3536 0.824109 CAGCAGGATCTCCGTTACCA 59.176 55.000 0.00 0.00 42.08 3.25
2168 3537 1.067821 CTCAGCAGGATCTCCGTTACC 59.932 57.143 0.00 0.00 42.08 2.85
2169 3538 1.067821 CCTCAGCAGGATCTCCGTTAC 59.932 57.143 0.00 0.00 43.65 2.50
2170 3539 1.403814 CCTCAGCAGGATCTCCGTTA 58.596 55.000 0.00 0.00 43.65 3.18
2171 3540 1.965754 GCCTCAGCAGGATCTCCGTT 61.966 60.000 0.00 0.00 43.65 4.44
2172 3541 2.430610 GCCTCAGCAGGATCTCCGT 61.431 63.158 0.00 0.00 43.65 4.69
2173 3542 2.132996 AGCCTCAGCAGGATCTCCG 61.133 63.158 0.00 0.00 43.65 4.63
2174 3543 1.446791 CAGCCTCAGCAGGATCTCC 59.553 63.158 0.00 0.00 43.65 3.71
2175 3544 1.227615 GCAGCCTCAGCAGGATCTC 60.228 63.158 0.00 0.00 43.65 2.75
2176 3545 2.744243 GGCAGCCTCAGCAGGATCT 61.744 63.158 3.29 0.00 43.65 2.75
2177 3546 2.203181 GGCAGCCTCAGCAGGATC 60.203 66.667 3.29 0.00 43.65 3.36
2178 3547 4.172512 CGGCAGCCTCAGCAGGAT 62.173 66.667 10.54 0.00 43.65 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.