Multiple sequence alignment - TraesCS4B01G277100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G277100 chr4B 100.000 4176 0 0 1 4176 558729071 558724896 0.000000e+00 7712.0
1 TraesCS4B01G277100 chr4D 93.139 3148 135 35 19 3136 446654681 446651585 0.000000e+00 4542.0
2 TraesCS4B01G277100 chr4D 89.048 630 38 15 3555 4174 446650835 446650227 0.000000e+00 752.0
3 TraesCS4B01G277100 chr4D 93.750 48 3 0 3177 3224 446651573 446651526 5.790000e-09 73.1
4 TraesCS4B01G277100 chr4A 89.728 3203 187 58 18 3132 21050673 21053821 0.000000e+00 3962.0
5 TraesCS4B01G277100 chr4A 88.013 634 49 11 3557 4174 21057724 21058346 0.000000e+00 725.0
6 TraesCS4B01G277100 chr3A 99.409 677 4 0 2098 2774 202581423 202582099 0.000000e+00 1229.0
7 TraesCS4B01G277100 chr7B 98.966 677 7 0 2098 2774 429274532 429275208 0.000000e+00 1212.0
8 TraesCS4B01G277100 chr7B 100.000 35 0 0 3258 3292 20063938 20063904 9.690000e-07 65.8
9 TraesCS4B01G277100 chr1A 78.947 152 24 8 1779 1926 140961528 140961675 3.440000e-16 97.1
10 TraesCS4B01G277100 chr1D 78.146 151 27 6 1779 1926 126473497 126473644 1.600000e-14 91.6
11 TraesCS4B01G277100 chr1D 93.023 43 2 1 3259 3300 302385476 302385518 1.250000e-05 62.1
12 TraesCS4B01G277100 chr6B 91.071 56 1 2 3241 3292 652982835 652982780 5.790000e-09 73.1
13 TraesCS4B01G277100 chr5D 93.478 46 1 2 1865 1909 543444008 543443964 2.690000e-07 67.6
14 TraesCS4B01G277100 chr2A 93.478 46 1 2 3252 3296 86984298 86984342 2.690000e-07 67.6
15 TraesCS4B01G277100 chr2A 97.368 38 0 1 3259 3295 768258257 768258294 3.490000e-06 63.9
16 TraesCS4B01G277100 chr1B 89.286 56 3 3 3241 3296 389954959 389954907 2.690000e-07 67.6
17 TraesCS4B01G277100 chr7D 97.368 38 1 0 3255 3292 245489304 245489341 9.690000e-07 65.8
18 TraesCS4B01G277100 chr5B 90.909 44 3 1 3256 3299 687473405 687473447 1.620000e-04 58.4
19 TraesCS4B01G277100 chr2B 94.595 37 1 1 3254 3290 26893142 26893107 5.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G277100 chr4B 558724896 558729071 4175 True 7712.000000 7712 100.0000 1 4176 1 chr4B.!!$R1 4175
1 TraesCS4B01G277100 chr4D 446650227 446654681 4454 True 1789.033333 4542 91.9790 19 4174 3 chr4D.!!$R1 4155
2 TraesCS4B01G277100 chr4A 21050673 21058346 7673 False 2343.500000 3962 88.8705 18 4174 2 chr4A.!!$F1 4156
3 TraesCS4B01G277100 chr3A 202581423 202582099 676 False 1229.000000 1229 99.4090 2098 2774 1 chr3A.!!$F1 676
4 TraesCS4B01G277100 chr7B 429274532 429275208 676 False 1212.000000 1212 98.9660 2098 2774 1 chr7B.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 934 0.186386 AACCAACCGATCAACCCCAA 59.814 50.0 0.0 0.0 0.00 4.12 F
904 946 0.189080 AACCCCAACCTAACCAACCC 59.811 55.0 0.0 0.0 0.00 4.11 F
1956 2025 0.105964 TCAAGTCCAAGACCACCACG 59.894 55.0 0.0 0.0 32.18 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2006 0.105964 CGTGGTGGTCTTGGACTTGA 59.894 55.000 0.0 0.0 32.47 3.02 R
2143 2212 2.952310 TGTCCATCTCGACGATCTTCAT 59.048 45.455 0.0 0.0 35.40 2.57 R
3348 6576 0.037303 CACATCAACCTGGAGTGCCT 59.963 55.000 0.0 0.0 34.31 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.615709 GCAGGCCAAACCACACCC 61.616 66.667 5.01 0.00 43.14 4.61
142 143 2.443016 GGCCAAACCACACCCACA 60.443 61.111 0.00 0.00 38.86 4.17
143 144 2.791868 GGCCAAACCACACCCACAC 61.792 63.158 0.00 0.00 38.86 3.82
291 303 2.639327 GCGGGCAGTGCTCCAAATT 61.639 57.895 16.11 0.00 0.00 1.82
390 409 0.247576 CGAGTACTGACGCCGTACTG 60.248 60.000 14.31 5.96 45.44 2.74
391 410 1.081892 GAGTACTGACGCCGTACTGA 58.918 55.000 14.31 0.00 45.44 3.41
392 411 1.062294 GAGTACTGACGCCGTACTGAG 59.938 57.143 14.31 0.00 45.44 3.35
393 412 1.081892 GTACTGACGCCGTACTGAGA 58.918 55.000 0.00 0.00 35.51 3.27
411 430 0.320508 GAGGTTCAGGTTCGGTGGAC 60.321 60.000 0.00 0.00 0.00 4.02
466 485 1.148273 ACCGTTGTCACAGTGGCAT 59.852 52.632 9.11 0.00 29.04 4.40
527 547 6.811253 ATTAAAACCTAAACAGTGATCGCA 57.189 33.333 9.33 0.00 0.00 5.10
543 563 6.425114 AGTGATCGCATACATAAAATCCAGAC 59.575 38.462 9.33 0.00 0.00 3.51
661 682 3.007723 ACAGACACAAGCATCTGATCTGT 59.992 43.478 8.18 13.82 44.32 3.41
725 753 3.190874 CTCGTGGATTCTAGGTCTTTGC 58.809 50.000 0.00 0.00 0.00 3.68
750 778 1.065401 TCAAACTTGTGCAGGCTTTCG 59.935 47.619 0.00 0.00 0.00 3.46
811 845 6.154706 GGTACTTAACCTCAGATTCTTCCAGA 59.845 42.308 0.00 0.00 45.75 3.86
885 927 0.539986 GAGGGCTAACCAACCGATCA 59.460 55.000 0.00 0.00 43.89 2.92
887 929 1.092348 GGGCTAACCAACCGATCAAC 58.908 55.000 0.00 0.00 39.85 3.18
888 930 1.092348 GGCTAACCAACCGATCAACC 58.908 55.000 0.00 0.00 35.26 3.77
889 931 1.092348 GCTAACCAACCGATCAACCC 58.908 55.000 0.00 0.00 0.00 4.11
890 932 1.746470 CTAACCAACCGATCAACCCC 58.254 55.000 0.00 0.00 0.00 4.95
891 933 1.003812 CTAACCAACCGATCAACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
892 934 0.186386 AACCAACCGATCAACCCCAA 59.814 50.000 0.00 0.00 0.00 4.12
893 935 0.538746 ACCAACCGATCAACCCCAAC 60.539 55.000 0.00 0.00 0.00 3.77
895 937 0.251165 CAACCGATCAACCCCAACCT 60.251 55.000 0.00 0.00 0.00 3.50
897 939 1.364269 ACCGATCAACCCCAACCTAA 58.636 50.000 0.00 0.00 0.00 2.69
904 946 0.189080 AACCCCAACCTAACCAACCC 59.811 55.000 0.00 0.00 0.00 4.11
907 949 1.555967 CCCAACCTAACCAACCCATG 58.444 55.000 0.00 0.00 0.00 3.66
908 950 1.076350 CCCAACCTAACCAACCCATGA 59.924 52.381 0.00 0.00 0.00 3.07
909 951 2.292192 CCCAACCTAACCAACCCATGAT 60.292 50.000 0.00 0.00 0.00 2.45
913 955 3.968265 ACCTAACCAACCCATGATTGAG 58.032 45.455 10.32 4.68 0.00 3.02
1212 1277 2.575735 TCCATGCAACTAGGGTGATGAA 59.424 45.455 0.00 0.00 0.00 2.57
1278 1343 1.830145 GCTAAGGAGCGATGGGGAA 59.170 57.895 0.00 0.00 39.39 3.97
1438 1503 3.753434 CTGACGCCGGAGCAGACT 61.753 66.667 19.50 0.00 39.83 3.24
1446 1511 4.057428 GGAGCAGACTGGACGCGT 62.057 66.667 13.85 13.85 0.00 6.01
1450 1515 2.801162 CAGACTGGACGCGTCGTG 60.801 66.667 30.99 26.25 41.37 4.35
1477 1545 2.032681 GAGGCCGACAGCTTTGGT 59.967 61.111 0.00 0.00 43.05 3.67
1492 1560 4.773117 GGTGCGTCTCGGTCGTCC 62.773 72.222 0.00 0.00 0.00 4.79
1512 1580 1.216977 CGACATCGCAGGTTGGGTA 59.783 57.895 0.00 0.00 0.00 3.69
1527 1595 0.524862 GGGTACGACGAGAAGAAGCA 59.475 55.000 0.00 0.00 0.00 3.91
1744 1813 5.067674 TCAGACCAAACACTTCATTTTCTGG 59.932 40.000 0.00 0.00 30.17 3.86
1956 2025 0.105964 TCAAGTCCAAGACCACCACG 59.894 55.000 0.00 0.00 32.18 4.94
1968 2037 4.116585 ACCACGCCCACCACACAA 62.117 61.111 0.00 0.00 0.00 3.33
1979 2048 2.048597 CACACAACGCCGCCTAGA 60.049 61.111 0.00 0.00 0.00 2.43
2083 2152 1.429463 AAGCGGAACTTGACACGATC 58.571 50.000 0.00 0.00 37.17 3.69
2089 2158 4.092968 GCGGAACTTGACACGATCTTAATT 59.907 41.667 0.00 0.00 0.00 1.40
2143 2212 1.164662 CCGGTCGAGCGAGGAGAATA 61.165 60.000 36.08 0.00 0.00 1.75
2801 2876 6.311445 ACAATTCTACACTCAAGCATCTTACG 59.689 38.462 0.00 0.00 0.00 3.18
2817 2892 2.203800 TACGGATCGATCAACTGCAC 57.796 50.000 25.93 6.62 0.00 4.57
2949 3046 6.558009 TGCTCATGAGAAAATTGCTTGATAC 58.442 36.000 27.04 3.05 0.00 2.24
2951 3048 6.691818 GCTCATGAGAAAATTGCTTGATACTG 59.308 38.462 27.04 0.00 0.00 2.74
2953 3050 7.532571 TCATGAGAAAATTGCTTGATACTGTG 58.467 34.615 0.00 0.00 0.00 3.66
3093 3194 6.998074 TCTTTTTATACACAGGGCATATCTGG 59.002 38.462 0.00 0.00 36.62 3.86
3136 3240 8.594550 ACTCAGTGTAATTAGAAATGTAGTGGT 58.405 33.333 0.00 0.00 0.00 4.16
3163 3267 6.811253 AAAAATGTACTGGTTTATCTCGCA 57.189 33.333 0.00 0.00 0.00 5.10
3164 3268 6.811253 AAAATGTACTGGTTTATCTCGCAA 57.189 33.333 0.00 0.00 0.00 4.85
3165 3269 6.811253 AAATGTACTGGTTTATCTCGCAAA 57.189 33.333 0.00 0.00 0.00 3.68
3166 3270 6.422776 AATGTACTGGTTTATCTCGCAAAG 57.577 37.500 0.00 0.00 0.00 2.77
3167 3271 5.142061 TGTACTGGTTTATCTCGCAAAGA 57.858 39.130 0.00 0.00 38.72 2.52
3168 3272 5.543714 TGTACTGGTTTATCTCGCAAAGAA 58.456 37.500 0.00 0.00 37.61 2.52
3169 3273 5.992829 TGTACTGGTTTATCTCGCAAAGAAA 59.007 36.000 0.00 0.00 37.61 2.52
3170 3274 6.483974 TGTACTGGTTTATCTCGCAAAGAAAA 59.516 34.615 0.00 0.00 37.61 2.29
3171 3275 6.385649 ACTGGTTTATCTCGCAAAGAAAAA 57.614 33.333 0.00 0.00 37.61 1.94
3211 3315 0.519999 GCTCGCAATTTGCTCAGTCG 60.520 55.000 18.57 2.91 42.25 4.18
3219 3323 2.423926 TTTGCTCAGTCGAGACTCAC 57.576 50.000 2.29 0.44 42.34 3.51
3224 3328 2.608268 CTCAGTCGAGACTCACGAGTA 58.392 52.381 2.29 0.00 42.66 2.59
3226 3330 2.029200 TCAGTCGAGACTCACGAGTACT 60.029 50.000 2.29 0.00 42.66 2.73
3228 3332 4.114073 CAGTCGAGACTCACGAGTACTAT 58.886 47.826 2.29 0.00 42.66 2.12
3229 3333 4.567558 CAGTCGAGACTCACGAGTACTATT 59.432 45.833 2.29 0.00 42.66 1.73
3230 3334 4.805192 AGTCGAGACTCACGAGTACTATTC 59.195 45.833 4.59 0.00 42.66 1.75
3232 3336 3.248125 CGAGACTCACGAGTACTATTCCC 59.752 52.174 2.82 0.00 42.66 3.97
3233 3337 4.453751 GAGACTCACGAGTACTATTCCCT 58.546 47.826 0.00 0.00 42.66 4.20
3234 3338 4.453751 AGACTCACGAGTACTATTCCCTC 58.546 47.826 0.00 0.00 42.66 4.30
3236 3340 2.548904 CTCACGAGTACTATTCCCTCCG 59.451 54.545 0.00 0.00 0.00 4.63
3237 3341 2.092753 TCACGAGTACTATTCCCTCCGT 60.093 50.000 0.00 0.00 0.00 4.69
3239 3343 2.172293 ACGAGTACTATTCCCTCCGTCT 59.828 50.000 0.00 0.00 0.00 4.18
3240 3344 2.807392 CGAGTACTATTCCCTCCGTCTC 59.193 54.545 0.00 0.00 0.00 3.36
3242 3346 4.400120 GAGTACTATTCCCTCCGTCTCAT 58.600 47.826 0.00 0.00 0.00 2.90
3243 3347 4.805744 AGTACTATTCCCTCCGTCTCATT 58.194 43.478 0.00 0.00 0.00 2.57
3244 3348 5.950023 AGTACTATTCCCTCCGTCTCATTA 58.050 41.667 0.00 0.00 0.00 1.90
3245 3349 6.553857 AGTACTATTCCCTCCGTCTCATTAT 58.446 40.000 0.00 0.00 0.00 1.28
3246 3350 7.696981 AGTACTATTCCCTCCGTCTCATTATA 58.303 38.462 0.00 0.00 0.00 0.98
3248 3352 9.624373 GTACTATTCCCTCCGTCTCATTATATA 57.376 37.037 0.00 0.00 0.00 0.86
3250 3354 9.191479 ACTATTCCCTCCGTCTCATTATATAAG 57.809 37.037 1.02 0.00 0.00 1.73
3251 3355 9.409918 CTATTCCCTCCGTCTCATTATATAAGA 57.590 37.037 1.02 0.00 0.00 2.10
3252 3356 7.704578 TTCCCTCCGTCTCATTATATAAGAG 57.295 40.000 1.02 8.07 0.00 2.85
3253 3357 6.791371 TCCCTCCGTCTCATTATATAAGAGT 58.209 40.000 15.55 0.00 0.00 3.24
3254 3358 6.659668 TCCCTCCGTCTCATTATATAAGAGTG 59.340 42.308 15.55 5.48 0.00 3.51
3255 3359 6.434652 CCCTCCGTCTCATTATATAAGAGTGT 59.565 42.308 15.55 0.00 0.00 3.55
3256 3360 7.610692 CCCTCCGTCTCATTATATAAGAGTGTA 59.389 40.741 15.55 2.31 0.00 2.90
3257 3361 8.670135 CCTCCGTCTCATTATATAAGAGTGTAG 58.330 40.741 15.55 11.26 0.00 2.74
3258 3362 9.438228 CTCCGTCTCATTATATAAGAGTGTAGA 57.562 37.037 15.55 6.98 0.00 2.59
3259 3363 9.788889 TCCGTCTCATTATATAAGAGTGTAGAA 57.211 33.333 15.55 1.36 0.00 2.10
3297 3401 3.170717 TGAAACGGAGGGAGTACTCAAT 58.829 45.455 23.91 11.72 39.27 2.57
3307 3411 5.953571 AGGGAGTACTCAATTTGAACCTTT 58.046 37.500 23.91 0.00 0.00 3.11
3309 3413 6.940867 AGGGAGTACTCAATTTGAACCTTTAC 59.059 38.462 23.91 1.06 0.00 2.01
3310 3414 6.940867 GGGAGTACTCAATTTGAACCTTTACT 59.059 38.462 23.91 3.15 0.00 2.24
3311 3415 7.094762 GGGAGTACTCAATTTGAACCTTTACTG 60.095 40.741 23.91 0.00 0.00 2.74
3363 6591 3.586470 TTTTTAGGCACTCCAGGTTGA 57.414 42.857 0.00 0.00 41.75 3.18
3364 6592 3.806949 TTTTAGGCACTCCAGGTTGAT 57.193 42.857 0.00 0.00 41.75 2.57
3365 6593 2.787473 TTAGGCACTCCAGGTTGATG 57.213 50.000 0.00 0.00 41.75 3.07
3366 6594 1.656587 TAGGCACTCCAGGTTGATGT 58.343 50.000 0.00 0.00 41.75 3.06
3367 6595 0.037303 AGGCACTCCAGGTTGATGTG 59.963 55.000 0.00 0.00 33.74 3.21
3368 6596 1.878775 GCACTCCAGGTTGATGTGC 59.121 57.895 0.00 0.00 45.23 4.57
3369 6597 3.327600 CACTCCAGGTTGATGTGCA 57.672 52.632 0.00 0.00 0.00 4.57
3370 6598 1.830279 CACTCCAGGTTGATGTGCAT 58.170 50.000 0.00 0.00 0.00 3.96
3371 6599 1.741706 CACTCCAGGTTGATGTGCATC 59.258 52.381 5.30 5.30 38.29 3.91
3372 6600 1.632409 ACTCCAGGTTGATGTGCATCT 59.368 47.619 12.64 0.00 38.60 2.90
3373 6601 2.286872 CTCCAGGTTGATGTGCATCTC 58.713 52.381 12.64 6.57 38.60 2.75
3374 6602 1.065199 TCCAGGTTGATGTGCATCTCC 60.065 52.381 12.64 13.53 38.60 3.71
3375 6603 1.012086 CAGGTTGATGTGCATCTCCG 58.988 55.000 12.64 8.22 38.60 4.63
3376 6604 0.615331 AGGTTGATGTGCATCTCCGT 59.385 50.000 12.64 3.34 38.60 4.69
3377 6605 0.729116 GGTTGATGTGCATCTCCGTG 59.271 55.000 12.64 0.00 38.60 4.94
3421 6649 1.093972 TGTGGACAACAGCAACAGTG 58.906 50.000 0.00 0.00 33.78 3.66
3432 6660 1.061411 CAACAGTGCGATGCGATGG 59.939 57.895 0.00 0.00 0.00 3.51
3434 6662 3.945434 CAGTGCGATGCGATGGGC 61.945 66.667 0.00 0.00 43.96 5.36
3454 6709 4.195334 GCGATGGGATGGGCCTGT 62.195 66.667 4.53 0.00 36.66 4.00
3458 6713 1.067295 GATGGGATGGGCCTGTATCA 58.933 55.000 4.53 0.00 36.66 2.15
3475 7160 5.172934 TGTATCATTAACTGTCGTTGGTCC 58.827 41.667 0.00 0.00 34.59 4.46
3476 7161 3.755112 TCATTAACTGTCGTTGGTCCA 57.245 42.857 0.00 0.00 34.59 4.02
3477 7162 4.280436 TCATTAACTGTCGTTGGTCCAT 57.720 40.909 0.00 0.00 34.59 3.41
3478 7163 4.000325 TCATTAACTGTCGTTGGTCCATG 59.000 43.478 0.00 0.00 34.59 3.66
3485 7170 0.324614 TCGTTGGTCCATGCATGTCT 59.675 50.000 24.58 0.00 0.00 3.41
3494 7179 1.584175 CATGCATGTCTCTCTCCTGC 58.416 55.000 18.91 0.00 0.00 4.85
3519 7204 2.819608 CCAAACACGGACCATCAAGATT 59.180 45.455 0.00 0.00 0.00 2.40
3528 7213 4.201950 CGGACCATCAAGATTGCCTAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
3532 7217 6.691508 ACCATCAAGATTGCCTAAAAGAAAC 58.308 36.000 0.00 0.00 0.00 2.78
3560 7272 1.470805 CGCACACGGTATCTCATCCAA 60.471 52.381 0.00 0.00 34.97 3.53
3561 7273 2.627945 GCACACGGTATCTCATCCAAA 58.372 47.619 0.00 0.00 0.00 3.28
3599 7721 3.623960 TGCGTATCCCTGTTTTATTTCGG 59.376 43.478 0.00 0.00 0.00 4.30
3626 7748 6.964370 TCTTGATTTCAAATGTTAATACCGCG 59.036 34.615 0.00 0.00 35.15 6.46
3640 7762 1.312371 ACCGCGCATTTAATGGTGCT 61.312 50.000 8.75 0.00 39.16 4.40
3648 7770 6.565060 CGCGCATTTAATGGTGCTTAAGTATA 60.565 38.462 8.75 0.00 39.16 1.47
3650 7772 7.271223 GCGCATTTAATGGTGCTTAAGTATATG 59.729 37.037 0.30 0.56 39.16 1.78
3660 7782 5.061064 GTGCTTAAGTATATGAGATTCCGCG 59.939 44.000 0.00 0.00 0.00 6.46
3688 7810 3.283751 TGGATTTGTTTATACGGGCTGG 58.716 45.455 0.00 0.00 0.00 4.85
3708 7830 2.280797 GCTGACGGACACTTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
3710 7832 1.915614 GCTGACGGACACTTGCCATG 61.916 60.000 0.00 0.00 0.00 3.66
3713 7835 2.741985 CGGACACTTGCCATGCGA 60.742 61.111 0.00 0.00 0.00 5.10
3721 7843 1.721664 CTTGCCATGCGAGGTGGATG 61.722 60.000 5.48 0.00 45.29 3.51
3729 7851 2.599597 GAGGTGGATGCCATGCCT 59.400 61.111 0.00 0.00 35.28 4.75
3730 7852 1.826921 GAGGTGGATGCCATGCCTG 60.827 63.158 0.80 0.00 35.28 4.85
3731 7853 2.274948 GAGGTGGATGCCATGCCTGA 62.275 60.000 0.80 0.00 35.28 3.86
3732 7854 1.152610 GGTGGATGCCATGCCTGAT 60.153 57.895 0.00 0.00 35.28 2.90
3733 7855 1.461091 GGTGGATGCCATGCCTGATG 61.461 60.000 0.00 0.00 35.28 3.07
3734 7856 1.830847 TGGATGCCATGCCTGATGC 60.831 57.895 0.00 0.00 41.77 3.91
3735 7857 2.571216 GGATGCCATGCCTGATGCC 61.571 63.158 0.00 0.00 40.16 4.40
3736 7858 1.530891 GATGCCATGCCTGATGCCT 60.531 57.895 0.00 0.00 40.16 4.75
3737 7859 1.524863 GATGCCATGCCTGATGCCTC 61.525 60.000 0.00 0.00 40.16 4.70
3739 7861 2.203451 CCATGCCTGATGCCTCCC 60.203 66.667 0.00 0.00 40.16 4.30
3741 7863 1.153061 CATGCCTGATGCCTCCCAT 59.847 57.895 0.00 0.00 40.16 4.00
3747 7869 2.031768 GATGCCTCCCATCGAGCC 59.968 66.667 0.00 0.00 40.84 4.70
3748 7870 3.873026 GATGCCTCCCATCGAGCCG 62.873 68.421 0.00 0.00 40.84 5.52
3751 7873 3.854669 CCTCCCATCGAGCCGCTT 61.855 66.667 0.00 0.00 37.27 4.68
3752 7874 2.587194 CTCCCATCGAGCCGCTTG 60.587 66.667 0.56 0.56 0.00 4.01
3768 7890 1.003866 GCTTGTTATAAAGCGAGGGCG 60.004 52.381 0.00 0.00 42.86 6.13
3808 7940 3.620427 TCTTGTGTGTGTGTTACCAGT 57.380 42.857 0.00 0.00 0.00 4.00
3883 8015 1.137614 CGCTCTCGTGCTGCTTCTA 59.862 57.895 0.00 0.00 0.00 2.10
4053 8193 4.627611 CAGTTGCTGGATCGATCATTTT 57.372 40.909 25.93 2.86 0.00 1.82
4054 8194 5.739752 CAGTTGCTGGATCGATCATTTTA 57.260 39.130 25.93 6.24 0.00 1.52
4055 8195 5.505286 CAGTTGCTGGATCGATCATTTTAC 58.495 41.667 25.93 16.73 0.00 2.01
4060 8204 8.345565 GTTGCTGGATCGATCATTTTACTTTAT 58.654 33.333 25.93 0.00 0.00 1.40
4084 8228 5.779529 AATATTCGCTTGATTTGATGGCT 57.220 34.783 0.00 0.00 0.00 4.75
4138 8282 2.153401 TGGTGAAGGTGGAGGTGGG 61.153 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.354506 GTCTTCCATCTGCATGCGC 59.645 57.895 14.09 0.00 39.24 6.09
7 8 1.086067 ACGTCTTCCATCTGCATGCG 61.086 55.000 14.09 8.20 0.00 4.73
8 9 0.654683 GACGTCTTCCATCTGCATGC 59.345 55.000 11.82 11.82 0.00 4.06
9 10 1.293924 GGACGTCTTCCATCTGCATG 58.706 55.000 16.46 0.00 45.10 4.06
10 11 3.768633 GGACGTCTTCCATCTGCAT 57.231 52.632 16.46 0.00 45.10 3.96
94 95 1.717194 TCGTCTTTAATGACCGCACC 58.283 50.000 14.06 0.00 33.70 5.01
95 96 2.471749 CGTTCGTCTTTAATGACCGCAC 60.472 50.000 14.06 9.60 33.70 5.34
96 97 1.722464 CGTTCGTCTTTAATGACCGCA 59.278 47.619 14.06 0.50 33.70 5.69
97 98 1.987770 TCGTTCGTCTTTAATGACCGC 59.012 47.619 14.06 5.59 33.70 5.68
98 99 2.027688 GCTCGTTCGTCTTTAATGACCG 59.972 50.000 14.06 12.06 33.70 4.79
280 287 6.485984 AGATGATACATCTGAATTTGGAGCAC 59.514 38.462 12.53 0.00 0.00 4.40
291 303 5.922544 CGTGTAATGCAGATGATACATCTGA 59.077 40.000 32.24 21.82 46.25 3.27
390 409 0.037232 CCACCGAACCTGAACCTCTC 60.037 60.000 0.00 0.00 0.00 3.20
391 410 0.471211 TCCACCGAACCTGAACCTCT 60.471 55.000 0.00 0.00 0.00 3.69
392 411 0.320508 GTCCACCGAACCTGAACCTC 60.321 60.000 0.00 0.00 0.00 3.85
393 412 1.752833 GTCCACCGAACCTGAACCT 59.247 57.895 0.00 0.00 0.00 3.50
411 430 2.390599 CCTGTTCACCACGCATCCG 61.391 63.158 0.00 0.00 41.14 4.18
442 461 0.463654 ACTGTGACAACGGTGCATGT 60.464 50.000 0.00 0.83 44.50 3.21
513 533 8.556194 GGATTTTATGTATGCGATCACTGTTTA 58.444 33.333 0.00 0.00 0.00 2.01
527 547 6.488006 GTGCTGGATGTCTGGATTTTATGTAT 59.512 38.462 0.00 0.00 0.00 2.29
543 563 1.015109 GAGCTCACATGTGCTGGATG 58.985 55.000 21.38 7.52 43.90 3.51
686 711 2.096268 CGAGCTGCGAAGACAAAATCAA 60.096 45.455 0.00 0.00 44.57 2.57
689 714 1.195448 CACGAGCTGCGAAGACAAAAT 59.805 47.619 11.64 0.00 44.57 1.82
725 753 1.603678 GCCTGCACAAGTTTGACATGG 60.604 52.381 0.00 2.69 0.00 3.66
750 778 0.171903 TGGCGTTAGTTAGCTCGACC 59.828 55.000 0.00 0.00 0.00 4.79
811 845 1.074084 TCTCTGTCCTCAGGTTCGTCT 59.926 52.381 0.00 0.00 41.59 4.18
885 927 0.189080 GGGTTGGTTAGGTTGGGGTT 59.811 55.000 0.00 0.00 0.00 4.11
887 929 0.411848 ATGGGTTGGTTAGGTTGGGG 59.588 55.000 0.00 0.00 0.00 4.96
888 930 1.076350 TCATGGGTTGGTTAGGTTGGG 59.924 52.381 0.00 0.00 0.00 4.12
889 931 2.595750 TCATGGGTTGGTTAGGTTGG 57.404 50.000 0.00 0.00 0.00 3.77
890 932 4.085733 TCAATCATGGGTTGGTTAGGTTG 58.914 43.478 10.51 0.00 0.00 3.77
891 933 4.202673 ACTCAATCATGGGTTGGTTAGGTT 60.203 41.667 10.51 0.00 36.68 3.50
892 934 3.333680 ACTCAATCATGGGTTGGTTAGGT 59.666 43.478 10.51 2.80 36.68 3.08
893 935 3.696051 CACTCAATCATGGGTTGGTTAGG 59.304 47.826 10.51 2.37 38.55 2.69
895 937 4.202514 TGTCACTCAATCATGGGTTGGTTA 60.203 41.667 10.51 0.44 38.55 2.85
897 939 2.108075 TGTCACTCAATCATGGGTTGGT 59.892 45.455 10.51 6.18 38.55 3.67
904 946 2.947652 GGGTCCATGTCACTCAATCATG 59.052 50.000 0.00 0.00 38.72 3.07
907 949 1.656652 CGGGTCCATGTCACTCAATC 58.343 55.000 0.00 0.00 0.00 2.67
908 950 0.253044 CCGGGTCCATGTCACTCAAT 59.747 55.000 0.00 0.00 0.00 2.57
909 951 1.676968 CCGGGTCCATGTCACTCAA 59.323 57.895 0.00 0.00 0.00 3.02
1176 1235 0.113580 ATGGATGCCATGGCTATGCA 59.886 50.000 35.53 32.43 43.39 3.96
1190 1250 2.779430 TCATCACCCTAGTTGCATGGAT 59.221 45.455 0.00 0.00 0.00 3.41
1200 1265 3.742882 CGTGCATGTATTCATCACCCTAG 59.257 47.826 0.00 0.00 33.19 3.02
1212 1277 1.533299 TGAAACGCAACGTGCATGTAT 59.467 42.857 12.96 0.00 45.36 2.29
1390 1455 1.679898 CCGGAAGCTCCACCTCTTT 59.320 57.895 0.00 0.00 35.91 2.52
1458 1523 2.037136 CCAAAGCTGTCGGCCTCAG 61.037 63.158 17.02 17.02 43.05 3.35
1472 1540 2.355363 CGACCGAGACGCACCAAA 60.355 61.111 0.00 0.00 0.00 3.28
1498 1566 1.217244 GTCGTACCCAACCTGCGAT 59.783 57.895 0.00 0.00 34.10 4.58
1502 1570 0.599558 TTCTCGTCGTACCCAACCTG 59.400 55.000 0.00 0.00 0.00 4.00
1506 1574 1.068055 GCTTCTTCTCGTCGTACCCAA 60.068 52.381 0.00 0.00 0.00 4.12
1507 1575 0.524862 GCTTCTTCTCGTCGTACCCA 59.475 55.000 0.00 0.00 0.00 4.51
1512 1580 1.729838 GCGTGCTTCTTCTCGTCGT 60.730 57.895 0.00 0.00 0.00 4.34
1609 1677 2.347490 GCCTTGCGGGAAGACAGA 59.653 61.111 11.11 0.00 37.23 3.41
1715 1783 9.696917 GAAAATGAAGTGTTTGGTCTGAATTAT 57.303 29.630 0.00 0.00 0.00 1.28
1716 1784 8.912988 AGAAAATGAAGTGTTTGGTCTGAATTA 58.087 29.630 0.00 0.00 0.00 1.40
1717 1785 7.707893 CAGAAAATGAAGTGTTTGGTCTGAATT 59.292 33.333 0.00 0.00 30.47 2.17
1744 1813 1.006571 TCAGTCCCAAGAACGCGAC 60.007 57.895 15.93 6.52 0.00 5.19
1760 1829 3.641492 GTGCATGCACGTCAGTCA 58.359 55.556 33.20 0.00 37.19 3.41
1841 1910 1.675801 CTGCTTCCTCACCAGCTGA 59.324 57.895 17.39 0.00 37.19 4.26
1937 2006 0.105964 CGTGGTGGTCTTGGACTTGA 59.894 55.000 0.00 0.00 32.47 3.02
2083 2152 7.727331 TCCAAGCCAAAATTCAACAATTAAG 57.273 32.000 0.00 0.00 31.51 1.85
2089 2158 4.478206 TGTTCCAAGCCAAAATTCAACA 57.522 36.364 0.00 0.00 0.00 3.33
2143 2212 2.952310 TGTCCATCTCGACGATCTTCAT 59.048 45.455 0.00 0.00 35.40 2.57
2801 2876 3.248602 GGTTATGTGCAGTTGATCGATCC 59.751 47.826 22.31 8.20 0.00 3.36
2817 2892 7.639850 CACGATAAAATAACAGCAGTGGTTATG 59.360 37.037 5.78 0.00 39.77 1.90
2949 3046 0.248907 ACACACGAACGAGACCACAG 60.249 55.000 0.14 0.00 0.00 3.66
2951 3048 0.526954 ACACACACGAACGAGACCAC 60.527 55.000 0.14 0.00 0.00 4.16
2953 3050 0.526954 ACACACACACGAACGAGACC 60.527 55.000 0.14 0.00 0.00 3.85
3069 3170 6.207417 CCCAGATATGCCCTGTGTATAAAAAG 59.793 42.308 0.00 0.00 0.00 2.27
3080 3181 1.701292 TCATGTCCCAGATATGCCCTG 59.299 52.381 0.00 0.00 32.47 4.45
3093 3194 2.688446 TGAGTACCTCGTCATCATGTCC 59.312 50.000 0.00 0.00 32.35 4.02
3140 3244 6.811253 TGCGAGATAAACCAGTACATTTTT 57.189 33.333 0.00 0.00 0.00 1.94
3141 3245 6.811253 TTGCGAGATAAACCAGTACATTTT 57.189 33.333 0.00 0.00 0.00 1.82
3142 3246 6.653320 TCTTTGCGAGATAAACCAGTACATTT 59.347 34.615 0.00 0.00 0.00 2.32
3143 3247 6.170506 TCTTTGCGAGATAAACCAGTACATT 58.829 36.000 0.00 0.00 0.00 2.71
3144 3248 5.730550 TCTTTGCGAGATAAACCAGTACAT 58.269 37.500 0.00 0.00 0.00 2.29
3145 3249 5.142061 TCTTTGCGAGATAAACCAGTACA 57.858 39.130 0.00 0.00 0.00 2.90
3146 3250 6.476243 TTTCTTTGCGAGATAAACCAGTAC 57.524 37.500 0.00 0.00 33.49 2.73
3170 3274 5.301805 AGCTTATTACACTGTGCCAGTTTTT 59.698 36.000 7.90 0.00 42.59 1.94
3171 3275 4.827284 AGCTTATTACACTGTGCCAGTTTT 59.173 37.500 7.90 0.00 42.59 2.43
3172 3276 4.398319 AGCTTATTACACTGTGCCAGTTT 58.602 39.130 7.90 2.83 42.59 2.66
3173 3277 4.003648 GAGCTTATTACACTGTGCCAGTT 58.996 43.478 7.90 0.00 42.59 3.16
3174 3278 3.600388 GAGCTTATTACACTGTGCCAGT 58.400 45.455 7.90 2.38 46.51 4.00
3175 3279 2.604914 CGAGCTTATTACACTGTGCCAG 59.395 50.000 7.90 1.16 37.52 4.85
3211 3315 4.453751 AGGGAATAGTACTCGTGAGTCTC 58.546 47.826 5.66 1.79 42.54 3.36
3219 3323 2.807392 GAGACGGAGGGAATAGTACTCG 59.193 54.545 0.00 0.00 32.11 4.18
3224 3328 9.191479 CTTATATAATGAGACGGAGGGAATAGT 57.809 37.037 0.00 0.00 0.00 2.12
3226 3330 9.409918 CTCTTATATAATGAGACGGAGGGAATA 57.590 37.037 12.80 0.00 0.00 1.75
3228 3332 7.176865 CACTCTTATATAATGAGACGGAGGGAA 59.823 40.741 19.93 0.00 0.00 3.97
3229 3333 6.659668 CACTCTTATATAATGAGACGGAGGGA 59.340 42.308 19.93 2.42 0.00 4.20
3230 3334 6.434652 ACACTCTTATATAATGAGACGGAGGG 59.565 42.308 19.93 13.79 0.00 4.30
3232 3336 9.438228 TCTACACTCTTATATAATGAGACGGAG 57.562 37.037 19.93 16.63 0.00 4.63
3233 3337 9.788889 TTCTACACTCTTATATAATGAGACGGA 57.211 33.333 19.93 11.30 0.00 4.69
3264 3368 9.117183 ACTCCCTCCGTTTCATAATATAAAAAC 57.883 33.333 0.00 0.00 0.00 2.43
3266 3370 9.768662 GTACTCCCTCCGTTTCATAATATAAAA 57.231 33.333 0.00 0.00 0.00 1.52
3267 3371 9.151177 AGTACTCCCTCCGTTTCATAATATAAA 57.849 33.333 0.00 0.00 0.00 1.40
3268 3372 8.716674 AGTACTCCCTCCGTTTCATAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
3269 3373 7.946219 TGAGTACTCCCTCCGTTTCATAATATA 59.054 37.037 20.11 0.00 0.00 0.86
3270 3374 6.781014 TGAGTACTCCCTCCGTTTCATAATAT 59.219 38.462 20.11 0.00 0.00 1.28
3271 3375 6.131264 TGAGTACTCCCTCCGTTTCATAATA 58.869 40.000 20.11 0.00 0.00 0.98
3272 3376 4.960469 TGAGTACTCCCTCCGTTTCATAAT 59.040 41.667 20.11 0.00 0.00 1.28
3273 3377 4.346730 TGAGTACTCCCTCCGTTTCATAA 58.653 43.478 20.11 0.00 0.00 1.90
3274 3378 3.972133 TGAGTACTCCCTCCGTTTCATA 58.028 45.455 20.11 0.00 0.00 2.15
3275 3379 2.816411 TGAGTACTCCCTCCGTTTCAT 58.184 47.619 20.11 0.00 0.00 2.57
3276 3380 2.297698 TGAGTACTCCCTCCGTTTCA 57.702 50.000 20.11 0.00 0.00 2.69
3277 3381 3.889520 ATTGAGTACTCCCTCCGTTTC 57.110 47.619 20.11 0.00 0.00 2.78
3278 3382 4.041198 TCAAATTGAGTACTCCCTCCGTTT 59.959 41.667 20.11 8.85 0.00 3.60
3279 3383 3.581332 TCAAATTGAGTACTCCCTCCGTT 59.419 43.478 20.11 3.40 0.00 4.44
3280 3384 3.170717 TCAAATTGAGTACTCCCTCCGT 58.829 45.455 20.11 0.00 0.00 4.69
3281 3385 3.887621 TCAAATTGAGTACTCCCTCCG 57.112 47.619 20.11 6.42 0.00 4.63
3282 3386 4.019231 AGGTTCAAATTGAGTACTCCCTCC 60.019 45.833 20.11 10.53 0.00 4.30
3283 3387 5.167303 AGGTTCAAATTGAGTACTCCCTC 57.833 43.478 20.11 0.00 0.00 4.30
3284 3388 5.584551 AAGGTTCAAATTGAGTACTCCCT 57.415 39.130 20.11 12.95 0.00 4.20
3285 3389 6.940867 AGTAAAGGTTCAAATTGAGTACTCCC 59.059 38.462 20.11 10.92 0.00 4.30
3286 3390 7.444487 ACAGTAAAGGTTCAAATTGAGTACTCC 59.556 37.037 20.11 1.86 0.00 3.85
3287 3391 8.379457 ACAGTAAAGGTTCAAATTGAGTACTC 57.621 34.615 16.32 16.32 0.00 2.59
3343 6571 3.586470 TCAACCTGGAGTGCCTAAAAA 57.414 42.857 0.00 0.00 34.31 1.94
3344 6572 3.181434 ACATCAACCTGGAGTGCCTAAAA 60.181 43.478 0.00 0.00 34.31 1.52
3345 6573 2.375174 ACATCAACCTGGAGTGCCTAAA 59.625 45.455 0.00 0.00 34.31 1.85
3346 6574 1.985159 ACATCAACCTGGAGTGCCTAA 59.015 47.619 0.00 0.00 34.31 2.69
3347 6575 1.278985 CACATCAACCTGGAGTGCCTA 59.721 52.381 0.00 0.00 34.31 3.93
3348 6576 0.037303 CACATCAACCTGGAGTGCCT 59.963 55.000 0.00 0.00 34.31 4.75
3349 6577 2.559785 CACATCAACCTGGAGTGCC 58.440 57.895 0.00 0.00 0.00 5.01
3351 6579 1.741706 GATGCACATCAACCTGGAGTG 59.258 52.381 0.00 0.00 37.74 3.51
3352 6580 1.632409 AGATGCACATCAACCTGGAGT 59.368 47.619 12.87 0.00 40.22 3.85
3353 6581 2.286872 GAGATGCACATCAACCTGGAG 58.713 52.381 12.87 0.00 40.22 3.86
3354 6582 1.065199 GGAGATGCACATCAACCTGGA 60.065 52.381 12.87 0.00 40.22 3.86
3355 6583 1.386533 GGAGATGCACATCAACCTGG 58.613 55.000 12.87 0.00 40.22 4.45
3356 6584 1.012086 CGGAGATGCACATCAACCTG 58.988 55.000 12.87 8.20 40.22 4.00
3357 6585 0.615331 ACGGAGATGCACATCAACCT 59.385 50.000 12.87 4.12 40.22 3.50
3358 6586 0.729116 CACGGAGATGCACATCAACC 59.271 55.000 12.87 13.14 40.22 3.77
3359 6587 0.729116 CCACGGAGATGCACATCAAC 59.271 55.000 12.87 6.39 40.22 3.18
3360 6588 0.324614 ACCACGGAGATGCACATCAA 59.675 50.000 12.87 0.00 40.22 2.57
3361 6589 0.391528 CACCACGGAGATGCACATCA 60.392 55.000 12.87 0.00 40.22 3.07
3362 6590 1.091771 CCACCACGGAGATGCACATC 61.092 60.000 2.28 2.28 36.56 3.06
3363 6591 1.078214 CCACCACGGAGATGCACAT 60.078 57.895 0.00 0.00 36.56 3.21
3364 6592 2.050836 AACCACCACGGAGATGCACA 62.051 55.000 0.00 0.00 38.63 4.57
3365 6593 1.302511 AACCACCACGGAGATGCAC 60.303 57.895 0.00 0.00 38.63 4.57
3366 6594 1.302431 CAACCACCACGGAGATGCA 60.302 57.895 0.00 0.00 38.63 3.96
3367 6595 2.040544 CCAACCACCACGGAGATGC 61.041 63.158 0.00 0.00 38.63 3.91
3368 6596 1.377202 CCCAACCACCACGGAGATG 60.377 63.158 0.00 0.00 38.63 2.90
3369 6597 3.077907 CCCAACCACCACGGAGAT 58.922 61.111 0.00 0.00 38.63 2.75
3370 6598 3.948719 GCCCAACCACCACGGAGA 61.949 66.667 0.00 0.00 38.63 3.71
3393 6621 1.279840 GTTGTCCACAGCAACTCGC 59.720 57.895 0.00 0.00 41.94 5.03
3414 6642 1.061411 CCATCGCATCGCACTGTTG 59.939 57.895 0.00 0.00 0.00 3.33
3415 6643 2.108514 CCCATCGCATCGCACTGTT 61.109 57.895 0.00 0.00 0.00 3.16
3423 6651 4.916293 TCGCAGGCCCATCGCATC 62.916 66.667 0.00 0.00 40.31 3.91
3424 6652 4.260609 ATCGCAGGCCCATCGCAT 62.261 61.111 0.00 0.00 40.31 4.73
3428 6656 3.201707 ATCCCATCGCAGGCCCATC 62.202 63.158 0.00 0.00 0.00 3.51
3429 6657 3.180799 ATCCCATCGCAGGCCCAT 61.181 61.111 0.00 0.00 0.00 4.00
3432 6660 4.962836 CCCATCCCATCGCAGGCC 62.963 72.222 0.00 0.00 0.00 5.19
3434 6662 4.962836 GGCCCATCCCATCGCAGG 62.963 72.222 0.00 0.00 0.00 4.85
3443 6698 4.074970 CAGTTAATGATACAGGCCCATCC 58.925 47.826 0.00 0.00 0.00 3.51
3454 6709 5.408880 TGGACCAACGACAGTTAATGATA 57.591 39.130 0.00 0.00 38.79 2.15
3458 6713 2.747446 GCATGGACCAACGACAGTTAAT 59.253 45.455 0.00 0.00 38.79 1.40
3475 7160 1.584175 GCAGGAGAGAGACATGCATG 58.416 55.000 25.09 25.09 36.88 4.06
3476 7161 0.469070 GGCAGGAGAGAGACATGCAT 59.531 55.000 0.00 0.00 38.63 3.96
3477 7162 1.620739 GGGCAGGAGAGAGACATGCA 61.621 60.000 0.00 0.00 38.63 3.96
3478 7163 1.145819 GGGCAGGAGAGAGACATGC 59.854 63.158 0.00 0.00 36.16 4.06
3485 7170 2.927856 TTTGGCGGGCAGGAGAGA 60.928 61.111 3.91 0.00 0.00 3.10
3509 7194 6.587608 GTGTTTCTTTTAGGCAATCTTGATGG 59.412 38.462 0.00 0.00 0.00 3.51
3519 7204 2.223618 GGCAACGTGTTTCTTTTAGGCA 60.224 45.455 0.00 0.00 0.00 4.75
3560 7272 2.562298 ACGCATCATTTGTTCCCATGTT 59.438 40.909 0.00 0.00 0.00 2.71
3561 7273 2.170166 ACGCATCATTTGTTCCCATGT 58.830 42.857 0.00 0.00 0.00 3.21
3599 7721 7.044052 GCGGTATTAACATTTGAAATCAAGAGC 60.044 37.037 0.00 0.00 37.15 4.09
3626 7748 9.831737 CTCATATACTTAAGCACCATTAAATGC 57.168 33.333 1.29 2.37 42.39 3.56
3640 7762 7.599171 TGATTCGCGGAATCTCATATACTTAA 58.401 34.615 22.67 1.27 45.92 1.85
3648 7770 2.810274 CCATTGATTCGCGGAATCTCAT 59.190 45.455 22.67 15.54 45.92 2.90
3650 7772 2.483876 TCCATTGATTCGCGGAATCTC 58.516 47.619 22.67 6.26 45.92 2.75
3660 7782 6.640907 GCCCGTATAAACAAATCCATTGATTC 59.359 38.462 0.00 0.00 40.34 2.52
3708 7830 1.527611 CATGGCATCCACCTCGCAT 60.528 57.895 0.00 0.00 35.80 4.73
3710 7832 3.589881 GCATGGCATCCACCTCGC 61.590 66.667 0.00 0.00 35.80 5.03
3713 7835 1.652187 ATCAGGCATGGCATCCACCT 61.652 55.000 22.64 11.63 35.80 4.00
3729 7851 2.824546 GCTCGATGGGAGGCATCA 59.175 61.111 0.00 0.00 43.36 3.07
3734 7856 3.854669 AAGCGGCTCGATGGGAGG 61.855 66.667 1.45 0.00 43.36 4.30
3735 7857 2.587194 CAAGCGGCTCGATGGGAG 60.587 66.667 1.45 0.00 46.06 4.30
3736 7858 1.609635 TAACAAGCGGCTCGATGGGA 61.610 55.000 1.45 0.00 0.00 4.37
3737 7859 0.532862 ATAACAAGCGGCTCGATGGG 60.533 55.000 1.45 0.00 0.00 4.00
3739 7861 3.604772 GCTTTATAACAAGCGGCTCGATG 60.605 47.826 1.45 0.00 39.92 3.84
3741 7863 1.931172 GCTTTATAACAAGCGGCTCGA 59.069 47.619 1.45 0.00 39.92 4.04
3748 7870 1.003866 CGCCCTCGCTTTATAACAAGC 60.004 52.381 0.00 0.00 45.01 4.01
3749 7871 2.277084 ACGCCCTCGCTTTATAACAAG 58.723 47.619 0.00 0.00 39.84 3.16
3750 7872 2.093869 AGACGCCCTCGCTTTATAACAA 60.094 45.455 0.00 0.00 39.84 2.83
3751 7873 1.479323 AGACGCCCTCGCTTTATAACA 59.521 47.619 0.00 0.00 39.84 2.41
3752 7874 1.859080 CAGACGCCCTCGCTTTATAAC 59.141 52.381 0.00 0.00 39.84 1.89
3768 7890 0.389426 ACAATGCCGTACGTCCAGAC 60.389 55.000 15.21 0.00 0.00 3.51
3808 7940 0.677288 ATCGACAGTCCGGTTCACAA 59.323 50.000 0.00 0.00 0.00 3.33
4060 8204 7.275888 AGCCATCAAATCAAGCGAATATTAA 57.724 32.000 0.00 0.00 0.00 1.40
4070 8214 7.988737 TGAACACTAATAGCCATCAAATCAAG 58.011 34.615 0.00 0.00 0.00 3.02
4084 8228 5.393787 CCAGGCTCGTACTTGAACACTAATA 60.394 44.000 0.00 0.00 0.00 0.98
4138 8282 1.369091 CTTGCACTCCATGTACCCGC 61.369 60.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.