Multiple sequence alignment - TraesCS4B01G275500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G275500 chr4B 100.000 1333 0 0 1351 2683 553866991 553868323 0.000000e+00 2462.0
1 TraesCS4B01G275500 chr4B 100.000 1050 0 0 1 1050 553865641 553866690 0.000000e+00 1940.0
2 TraesCS4B01G275500 chr4B 100.000 176 0 0 2155 2330 553872996 553873171 2.580000e-85 326.0
3 TraesCS4B01G275500 chr4B 93.750 64 4 0 987 1050 512335240 512335177 2.200000e-16 97.1
4 TraesCS4B01G275500 chr3D 96.981 530 15 1 2154 2683 569852925 569853453 0.000000e+00 889.0
5 TraesCS4B01G275500 chr3A 96.975 529 16 0 2155 2683 701941580 701942108 0.000000e+00 889.0
6 TraesCS4B01G275500 chr3A 96.610 177 6 0 2155 2331 701946784 701946960 7.260000e-76 294.0
7 TraesCS4B01G275500 chr5D 96.975 529 15 1 2155 2683 33018161 33017634 0.000000e+00 887.0
8 TraesCS4B01G275500 chr3B 95.911 538 14 2 2154 2683 76478420 76477883 0.000000e+00 865.0
9 TraesCS4B01G275500 chr4A 94.765 554 20 3 1351 1895 23611139 23610586 0.000000e+00 854.0
10 TraesCS4B01G275500 chr4A 86.905 672 40 18 386 1050 23611798 23611168 0.000000e+00 710.0
11 TraesCS4B01G275500 chr4A 81.967 122 14 5 1996 2117 23610456 23610343 2.200000e-16 97.1
12 TraesCS4B01G275500 chr2B 94.403 536 23 1 2154 2682 551476433 551475898 0.000000e+00 817.0
13 TraesCS4B01G275500 chr2B 90.998 511 36 4 2152 2661 635225623 635226124 0.000000e+00 680.0
14 TraesCS4B01G275500 chr2B 98.225 169 3 0 2155 2323 551452322 551452154 2.020000e-76 296.0
15 TraesCS4B01G275500 chr4D 91.577 558 32 4 1351 1895 444177369 444177924 0.000000e+00 756.0
16 TraesCS4B01G275500 chr4D 91.076 381 28 4 671 1050 444176965 444177340 6.630000e-141 510.0
17 TraesCS4B01G275500 chr4D 95.238 63 3 0 988 1050 415583736 415583674 1.700000e-17 100.0
18 TraesCS4B01G275500 chr1B 91.115 529 29 2 2155 2683 647071420 647070910 0.000000e+00 701.0
19 TraesCS4B01G275500 chr1B 97.929 338 7 0 1351 1688 434409164 434409501 1.070000e-163 586.0
20 TraesCS4B01G275500 chr1B 97.384 344 9 0 1351 1694 434423115 434422772 1.070000e-163 586.0
21 TraesCS4B01G275500 chr1B 94.118 68 4 0 983 1050 492369064 492368997 1.310000e-18 104.0
22 TraesCS4B01G275500 chr1A 87.934 547 42 17 1351 1884 468599117 468598582 8.160000e-175 623.0
23 TraesCS4B01G275500 chr1A 98.799 333 4 0 1351 1683 400975267 400974935 6.400000e-166 593.0
24 TraesCS4B01G275500 chr1A 78.495 372 49 19 688 1050 400975645 400975296 5.820000e-52 215.0
25 TraesCS4B01G275500 chr1D 94.221 398 20 2 1351 1746 321640750 321641146 2.950000e-169 604.0
26 TraesCS4B01G275500 chr1D 97.654 341 8 0 1351 1691 321704870 321704530 1.070000e-163 586.0
27 TraesCS4B01G275500 chr6D 91.284 436 28 9 1351 1784 29391858 29391431 1.070000e-163 586.0
28 TraesCS4B01G275500 chr6D 75.850 294 38 26 771 1047 28687844 28688121 4.690000e-23 119.0
29 TraesCS4B01G275500 chr7A 90.798 326 28 2 2357 2681 650438413 650438089 4.100000e-118 435.0
30 TraesCS4B01G275500 chr5A 90.850 306 28 0 2378 2683 512188252 512188557 6.910000e-111 411.0
31 TraesCS4B01G275500 chr5A 93.074 231 15 1 2149 2379 512127578 512127807 1.190000e-88 337.0
32 TraesCS4B01G275500 chr6B 90.698 86 2 6 966 1050 61796085 61796005 2.820000e-20 110.0
33 TraesCS4B01G275500 chr6A 98.305 59 1 0 992 1050 33964198 33964140 1.310000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G275500 chr4B 553865641 553868323 2682 False 2201.0 2462 100.0000 1 2683 2 chr4B.!!$F2 2682
1 TraesCS4B01G275500 chr3D 569852925 569853453 528 False 889.0 889 96.9810 2154 2683 1 chr3D.!!$F1 529
2 TraesCS4B01G275500 chr3A 701941580 701942108 528 False 889.0 889 96.9750 2155 2683 1 chr3A.!!$F1 528
3 TraesCS4B01G275500 chr5D 33017634 33018161 527 True 887.0 887 96.9750 2155 2683 1 chr5D.!!$R1 528
4 TraesCS4B01G275500 chr3B 76477883 76478420 537 True 865.0 865 95.9110 2154 2683 1 chr3B.!!$R1 529
5 TraesCS4B01G275500 chr4A 23610343 23611798 1455 True 553.7 854 87.8790 386 2117 3 chr4A.!!$R1 1731
6 TraesCS4B01G275500 chr2B 551475898 551476433 535 True 817.0 817 94.4030 2154 2682 1 chr2B.!!$R2 528
7 TraesCS4B01G275500 chr2B 635225623 635226124 501 False 680.0 680 90.9980 2152 2661 1 chr2B.!!$F1 509
8 TraesCS4B01G275500 chr4D 444176965 444177924 959 False 633.0 756 91.3265 671 1895 2 chr4D.!!$F1 1224
9 TraesCS4B01G275500 chr1B 647070910 647071420 510 True 701.0 701 91.1150 2155 2683 1 chr1B.!!$R3 528
10 TraesCS4B01G275500 chr1A 468598582 468599117 535 True 623.0 623 87.9340 1351 1884 1 chr1A.!!$R1 533
11 TraesCS4B01G275500 chr1A 400974935 400975645 710 True 404.0 593 88.6470 688 1683 2 chr1A.!!$R2 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.031585 CTGTCCGTTGGTCTCGTTCA 59.968 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2117 0.323302 TCGCCACTTATCAGGTTGCA 59.677 50.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.887733 CACTGTTTCAACGCGTAACTC 58.112 47.619 14.46 3.17 0.00 3.01
21 22 1.862827 ACTGTTTCAACGCGTAACTCC 59.137 47.619 14.46 1.14 0.00 3.85
22 23 1.862201 CTGTTTCAACGCGTAACTCCA 59.138 47.619 14.46 6.41 0.00 3.86
23 24 2.277969 TGTTTCAACGCGTAACTCCAA 58.722 42.857 14.46 0.00 0.00 3.53
24 25 2.285756 TGTTTCAACGCGTAACTCCAAG 59.714 45.455 14.46 0.00 0.00 3.61
25 26 2.228138 TTCAACGCGTAACTCCAAGT 57.772 45.000 14.46 0.00 0.00 3.16
26 27 2.228138 TCAACGCGTAACTCCAAGTT 57.772 45.000 14.46 0.00 41.97 2.66
27 28 1.862201 TCAACGCGTAACTCCAAGTTG 59.138 47.619 14.46 2.47 39.11 3.16
28 29 1.070175 CAACGCGTAACTCCAAGTTGG 60.070 52.381 14.46 16.36 39.11 3.77
29 30 0.601841 ACGCGTAACTCCAAGTTGGG 60.602 55.000 21.85 14.40 39.11 4.12
30 31 1.873863 GCGTAACTCCAAGTTGGGC 59.126 57.895 21.85 12.02 39.11 5.36
31 32 0.605589 GCGTAACTCCAAGTTGGGCT 60.606 55.000 21.85 9.01 39.11 5.19
32 33 1.156736 CGTAACTCCAAGTTGGGCTG 58.843 55.000 21.85 14.07 39.11 4.85
33 34 1.534729 GTAACTCCAAGTTGGGCTGG 58.465 55.000 21.85 11.73 39.11 4.85
34 35 1.145571 TAACTCCAAGTTGGGCTGGT 58.854 50.000 21.85 13.04 39.11 4.00
35 36 0.178990 AACTCCAAGTTGGGCTGGTC 60.179 55.000 21.85 0.00 37.00 4.02
36 37 1.672356 CTCCAAGTTGGGCTGGTCG 60.672 63.158 21.85 0.00 38.32 4.79
37 38 2.111999 CTCCAAGTTGGGCTGGTCGA 62.112 60.000 21.85 0.00 38.32 4.20
38 39 1.672356 CCAAGTTGGGCTGGTCGAG 60.672 63.158 14.64 0.00 32.67 4.04
39 40 1.071471 CAAGTTGGGCTGGTCGAGT 59.929 57.895 0.00 0.00 0.00 4.18
40 41 0.951040 CAAGTTGGGCTGGTCGAGTC 60.951 60.000 0.00 0.00 0.00 3.36
41 42 1.122019 AAGTTGGGCTGGTCGAGTCT 61.122 55.000 0.00 0.00 0.00 3.24
42 43 1.374758 GTTGGGCTGGTCGAGTCTG 60.375 63.158 0.00 0.00 0.00 3.51
43 44 1.533033 TTGGGCTGGTCGAGTCTGA 60.533 57.895 0.00 0.00 0.00 3.27
44 45 1.536073 TTGGGCTGGTCGAGTCTGAG 61.536 60.000 0.00 0.00 0.00 3.35
45 46 2.716017 GGGCTGGTCGAGTCTGAGG 61.716 68.421 0.00 0.00 0.00 3.86
46 47 2.716017 GGCTGGTCGAGTCTGAGGG 61.716 68.421 0.00 0.00 0.00 4.30
47 48 2.888863 CTGGTCGAGTCTGAGGGC 59.111 66.667 0.00 0.00 0.00 5.19
48 49 1.979155 CTGGTCGAGTCTGAGGGCA 60.979 63.158 0.00 0.00 0.00 5.36
49 50 2.219325 CTGGTCGAGTCTGAGGGCAC 62.219 65.000 0.00 0.00 0.00 5.01
50 51 2.179517 GTCGAGTCTGAGGGCACG 59.820 66.667 0.00 0.00 0.00 5.34
51 52 3.062466 TCGAGTCTGAGGGCACGG 61.062 66.667 0.00 0.00 0.00 4.94
52 53 3.374402 CGAGTCTGAGGGCACGGT 61.374 66.667 0.00 0.00 0.00 4.83
53 54 2.932234 CGAGTCTGAGGGCACGGTT 61.932 63.158 0.00 0.00 0.00 4.44
54 55 1.079750 GAGTCTGAGGGCACGGTTC 60.080 63.158 0.00 0.00 0.00 3.62
55 56 2.432628 GTCTGAGGGCACGGTTCG 60.433 66.667 0.00 0.00 0.00 3.95
56 57 2.915659 TCTGAGGGCACGGTTCGT 60.916 61.111 0.00 0.00 42.36 3.85
57 58 2.432628 CTGAGGGCACGGTTCGTC 60.433 66.667 0.00 0.00 38.32 4.20
58 59 3.220999 CTGAGGGCACGGTTCGTCA 62.221 63.158 0.00 4.38 38.32 4.35
59 60 2.029964 GAGGGCACGGTTCGTCAA 59.970 61.111 0.00 0.00 38.32 3.18
60 61 2.280592 AGGGCACGGTTCGTCAAC 60.281 61.111 0.00 0.00 38.32 3.18
61 62 2.589442 GGGCACGGTTCGTCAACA 60.589 61.111 0.00 0.00 38.32 3.33
62 63 2.181521 GGGCACGGTTCGTCAACAA 61.182 57.895 0.00 0.00 38.32 2.83
63 64 1.278637 GGCACGGTTCGTCAACAAG 59.721 57.895 0.00 0.00 38.32 3.16
64 65 1.433837 GGCACGGTTCGTCAACAAGT 61.434 55.000 0.00 0.00 38.32 3.16
65 66 0.375803 GCACGGTTCGTCAACAAGTT 59.624 50.000 0.00 0.00 38.32 2.66
66 67 1.854434 GCACGGTTCGTCAACAAGTTG 60.854 52.381 6.60 6.60 38.32 3.16
67 68 1.011333 ACGGTTCGTCAACAAGTTGG 58.989 50.000 12.54 0.00 40.78 3.77
68 69 1.011333 CGGTTCGTCAACAAGTTGGT 58.989 50.000 12.54 0.00 40.78 3.67
69 70 1.267832 CGGTTCGTCAACAAGTTGGTG 60.268 52.381 15.07 15.07 40.78 4.17
70 71 2.011222 GGTTCGTCAACAAGTTGGTGA 58.989 47.619 19.72 19.72 42.67 4.02
71 72 2.616842 GGTTCGTCAACAAGTTGGTGAT 59.383 45.455 25.67 0.00 46.88 3.06
72 73 3.810941 GGTTCGTCAACAAGTTGGTGATA 59.189 43.478 25.67 14.71 46.88 2.15
73 74 4.084013 GGTTCGTCAACAAGTTGGTGATAG 60.084 45.833 25.67 21.22 46.88 2.08
74 75 3.659786 TCGTCAACAAGTTGGTGATAGG 58.340 45.455 25.67 17.46 46.88 2.57
75 76 2.159627 CGTCAACAAGTTGGTGATAGGC 59.840 50.000 25.67 12.34 46.88 3.93
76 77 2.159627 GTCAACAAGTTGGTGATAGGCG 59.840 50.000 25.67 0.00 46.88 5.52
77 78 1.468520 CAACAAGTTGGTGATAGGCGG 59.531 52.381 16.20 0.00 37.20 6.13
78 79 0.690762 ACAAGTTGGTGATAGGCGGT 59.309 50.000 7.96 0.00 0.00 5.68
79 80 1.086696 CAAGTTGGTGATAGGCGGTG 58.913 55.000 0.00 0.00 0.00 4.94
80 81 0.676782 AAGTTGGTGATAGGCGGTGC 60.677 55.000 0.00 0.00 0.00 5.01
81 82 1.376683 GTTGGTGATAGGCGGTGCA 60.377 57.895 0.00 0.00 0.00 4.57
82 83 1.078497 TTGGTGATAGGCGGTGCAG 60.078 57.895 0.00 0.00 0.00 4.41
83 84 2.203070 GGTGATAGGCGGTGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
84 85 2.203070 GTGATAGGCGGTGCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
85 86 4.175337 TGATAGGCGGTGCAGGGC 62.175 66.667 3.27 3.27 0.00 5.19
94 95 4.459089 GTGCAGGGCGGAGGAGTC 62.459 72.222 0.00 0.00 0.00 3.36
97 98 3.068691 CAGGGCGGAGGAGTCGAA 61.069 66.667 0.00 0.00 0.00 3.71
98 99 3.069318 AGGGCGGAGGAGTCGAAC 61.069 66.667 0.00 0.00 0.00 3.95
99 100 4.144703 GGGCGGAGGAGTCGAACC 62.145 72.222 2.14 2.14 0.00 3.62
100 101 4.493747 GGCGGAGGAGTCGAACCG 62.494 72.222 14.09 14.09 46.74 4.44
101 102 3.745803 GCGGAGGAGTCGAACCGT 61.746 66.667 17.71 0.49 45.91 4.83
102 103 2.484203 CGGAGGAGTCGAACCGTC 59.516 66.667 11.36 0.00 40.42 4.79
103 104 2.039405 CGGAGGAGTCGAACCGTCT 61.039 63.158 11.36 0.00 40.42 4.18
104 105 1.507174 GGAGGAGTCGAACCGTCTG 59.493 63.158 0.00 0.00 0.00 3.51
105 106 1.153997 GAGGAGTCGAACCGTCTGC 60.154 63.158 0.00 0.00 34.38 4.26
106 107 2.126031 GGAGTCGAACCGTCTGCC 60.126 66.667 0.00 0.00 29.26 4.85
107 108 2.126031 GAGTCGAACCGTCTGCCC 60.126 66.667 0.00 0.00 0.00 5.36
108 109 3.644399 GAGTCGAACCGTCTGCCCC 62.644 68.421 0.00 0.00 0.00 5.80
123 124 4.758251 CCCGCGAGCATGACACCA 62.758 66.667 8.23 0.00 0.00 4.17
124 125 3.490759 CCGCGAGCATGACACCAC 61.491 66.667 8.23 0.00 0.00 4.16
125 126 3.842126 CGCGAGCATGACACCACG 61.842 66.667 0.00 0.00 0.00 4.94
126 127 2.432456 GCGAGCATGACACCACGA 60.432 61.111 0.00 0.00 0.00 4.35
127 128 1.811266 GCGAGCATGACACCACGAT 60.811 57.895 0.00 0.00 0.00 3.73
128 129 1.756375 GCGAGCATGACACCACGATC 61.756 60.000 0.00 0.00 0.00 3.69
129 130 1.474648 CGAGCATGACACCACGATCG 61.475 60.000 14.88 14.88 0.00 3.69
130 131 1.148157 GAGCATGACACCACGATCGG 61.148 60.000 20.98 8.32 0.00 4.18
131 132 1.153647 GCATGACACCACGATCGGA 60.154 57.895 20.98 0.00 0.00 4.55
132 133 1.148157 GCATGACACCACGATCGGAG 61.148 60.000 20.98 12.50 0.00 4.63
133 134 0.455815 CATGACACCACGATCGGAGA 59.544 55.000 20.98 0.00 45.75 3.71
134 135 0.741326 ATGACACCACGATCGGAGAG 59.259 55.000 20.98 10.97 43.63 3.20
135 136 1.313091 TGACACCACGATCGGAGAGG 61.313 60.000 20.98 16.91 43.63 3.69
136 137 2.005960 GACACCACGATCGGAGAGGG 62.006 65.000 20.98 14.18 43.63 4.30
137 138 1.753078 CACCACGATCGGAGAGGGA 60.753 63.158 20.98 0.00 43.63 4.20
138 139 1.109920 CACCACGATCGGAGAGGGAT 61.110 60.000 20.98 0.00 43.63 3.85
139 140 1.109920 ACCACGATCGGAGAGGGATG 61.110 60.000 20.98 5.58 43.63 3.51
140 141 1.006805 CACGATCGGAGAGGGATGC 60.007 63.158 20.98 0.00 43.63 3.91
141 142 2.203771 ACGATCGGAGAGGGATGCC 61.204 63.158 20.98 0.00 43.63 4.40
142 143 2.653702 GATCGGAGAGGGATGCCG 59.346 66.667 0.00 0.00 43.63 5.69
143 144 3.581687 GATCGGAGAGGGATGCCGC 62.582 68.421 0.00 0.00 43.63 6.53
146 147 4.593864 GGAGAGGGATGCCGCGAC 62.594 72.222 8.23 0.00 0.00 5.19
147 148 4.933064 GAGAGGGATGCCGCGACG 62.933 72.222 8.23 0.00 0.00 5.12
164 165 4.882396 GCCTCGAGCGCCTTCCTC 62.882 72.222 6.99 0.00 0.00 3.71
165 166 3.452786 CCTCGAGCGCCTTCCTCA 61.453 66.667 6.99 0.00 0.00 3.86
166 167 2.573869 CTCGAGCGCCTTCCTCAA 59.426 61.111 2.29 0.00 0.00 3.02
167 168 1.518133 CTCGAGCGCCTTCCTCAAG 60.518 63.158 2.29 0.00 0.00 3.02
168 169 2.219325 CTCGAGCGCCTTCCTCAAGT 62.219 60.000 2.29 0.00 0.00 3.16
169 170 2.097038 CGAGCGCCTTCCTCAAGTG 61.097 63.158 2.29 0.00 0.00 3.16
170 171 1.743252 GAGCGCCTTCCTCAAGTGG 60.743 63.158 2.29 0.00 0.00 4.00
171 172 2.032681 GCGCCTTCCTCAAGTGGT 59.967 61.111 0.00 0.00 0.00 4.16
172 173 2.328099 GCGCCTTCCTCAAGTGGTG 61.328 63.158 0.00 0.00 0.00 4.17
173 174 2.328099 CGCCTTCCTCAAGTGGTGC 61.328 63.158 0.00 0.00 0.00 5.01
174 175 2.328099 GCCTTCCTCAAGTGGTGCG 61.328 63.158 0.00 0.00 0.00 5.34
175 176 1.672356 CCTTCCTCAAGTGGTGCGG 60.672 63.158 0.00 0.00 32.92 5.69
176 177 1.071471 CTTCCTCAAGTGGTGCGGT 59.929 57.895 0.00 0.00 33.46 5.68
177 178 1.227823 TTCCTCAAGTGGTGCGGTG 60.228 57.895 0.00 0.00 33.46 4.94
178 179 3.357079 CCTCAAGTGGTGCGGTGC 61.357 66.667 0.00 0.00 0.00 5.01
179 180 3.716006 CTCAAGTGGTGCGGTGCG 61.716 66.667 0.00 0.00 0.00 5.34
180 181 4.228567 TCAAGTGGTGCGGTGCGA 62.229 61.111 0.00 0.00 0.00 5.10
181 182 4.012895 CAAGTGGTGCGGTGCGAC 62.013 66.667 0.00 0.00 0.00 5.19
182 183 4.539083 AAGTGGTGCGGTGCGACA 62.539 61.111 0.00 0.00 0.00 4.35
183 184 4.539083 AGTGGTGCGGTGCGACAA 62.539 61.111 0.00 0.00 0.00 3.18
184 185 3.578272 GTGGTGCGGTGCGACAAA 61.578 61.111 0.00 0.00 0.00 2.83
185 186 3.276091 TGGTGCGGTGCGACAAAG 61.276 61.111 0.00 0.00 0.00 2.77
186 187 2.970324 GGTGCGGTGCGACAAAGA 60.970 61.111 0.00 0.00 0.00 2.52
187 188 2.325082 GGTGCGGTGCGACAAAGAT 61.325 57.895 0.00 0.00 0.00 2.40
188 189 1.574428 GTGCGGTGCGACAAAGATT 59.426 52.632 0.00 0.00 0.00 2.40
189 190 0.725784 GTGCGGTGCGACAAAGATTG 60.726 55.000 0.00 0.00 0.00 2.67
190 191 1.797537 GCGGTGCGACAAAGATTGC 60.798 57.895 0.00 0.00 0.00 3.56
191 192 1.868997 CGGTGCGACAAAGATTGCT 59.131 52.632 0.00 0.00 0.00 3.91
192 193 0.179215 CGGTGCGACAAAGATTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
193 194 0.874390 GGTGCGACAAAGATTGCTCA 59.126 50.000 0.00 0.00 0.00 4.26
194 195 1.135859 GGTGCGACAAAGATTGCTCAG 60.136 52.381 0.00 0.00 0.00 3.35
195 196 1.800586 GTGCGACAAAGATTGCTCAGA 59.199 47.619 0.00 0.00 0.00 3.27
196 197 1.800586 TGCGACAAAGATTGCTCAGAC 59.199 47.619 0.00 0.00 0.00 3.51
197 198 1.800586 GCGACAAAGATTGCTCAGACA 59.199 47.619 0.00 0.00 0.00 3.41
198 199 2.224079 GCGACAAAGATTGCTCAGACAA 59.776 45.455 0.00 0.00 0.00 3.18
199 200 3.303990 GCGACAAAGATTGCTCAGACAAA 60.304 43.478 0.00 0.00 32.27 2.83
200 201 4.789481 GCGACAAAGATTGCTCAGACAAAA 60.789 41.667 0.00 0.00 32.27 2.44
201 202 5.273170 CGACAAAGATTGCTCAGACAAAAA 58.727 37.500 0.00 0.00 32.27 1.94
202 203 5.172053 CGACAAAGATTGCTCAGACAAAAAC 59.828 40.000 0.00 0.00 32.27 2.43
203 204 5.036737 ACAAAGATTGCTCAGACAAAAACG 58.963 37.500 0.00 0.00 32.27 3.60
204 205 5.163663 ACAAAGATTGCTCAGACAAAAACGA 60.164 36.000 0.00 0.00 32.27 3.85
205 206 4.474226 AGATTGCTCAGACAAAAACGAC 57.526 40.909 0.00 0.00 32.27 4.34
206 207 4.130118 AGATTGCTCAGACAAAAACGACT 58.870 39.130 0.00 0.00 32.27 4.18
207 208 5.297547 AGATTGCTCAGACAAAAACGACTA 58.702 37.500 0.00 0.00 32.27 2.59
208 209 5.934625 AGATTGCTCAGACAAAAACGACTAT 59.065 36.000 0.00 0.00 32.27 2.12
209 210 4.990543 TGCTCAGACAAAAACGACTATG 57.009 40.909 0.00 0.00 0.00 2.23
210 211 4.627058 TGCTCAGACAAAAACGACTATGA 58.373 39.130 0.00 0.00 0.00 2.15
211 212 4.447724 TGCTCAGACAAAAACGACTATGAC 59.552 41.667 0.00 0.00 0.00 3.06
212 213 4.447724 GCTCAGACAAAAACGACTATGACA 59.552 41.667 0.00 0.00 0.00 3.58
213 214 5.050363 GCTCAGACAAAAACGACTATGACAA 60.050 40.000 0.00 0.00 0.00 3.18
214 215 6.347725 GCTCAGACAAAAACGACTATGACAAT 60.348 38.462 0.00 0.00 0.00 2.71
215 216 6.887368 TCAGACAAAAACGACTATGACAATG 58.113 36.000 0.00 0.00 0.00 2.82
216 217 6.481976 TCAGACAAAAACGACTATGACAATGT 59.518 34.615 0.00 0.00 0.00 2.71
217 218 6.792250 CAGACAAAAACGACTATGACAATGTC 59.208 38.462 6.41 6.41 35.03 3.06
221 222 1.921243 CGACTATGACAATGTCGGCA 58.079 50.000 19.38 0.00 46.45 5.69
222 223 1.854743 CGACTATGACAATGTCGGCAG 59.145 52.381 19.38 7.85 46.45 4.85
223 224 2.735444 CGACTATGACAATGTCGGCAGT 60.735 50.000 19.38 10.85 46.45 4.40
224 225 2.604914 GACTATGACAATGTCGGCAGTG 59.395 50.000 16.92 16.92 45.18 3.66
225 226 1.328680 CTATGACAATGTCGGCAGTGC 59.671 52.381 18.52 10.94 43.70 4.40
226 227 1.308069 ATGACAATGTCGGCAGTGCC 61.308 55.000 25.07 25.07 43.70 5.01
236 237 3.136123 GCAGTGCCATGCCATCGT 61.136 61.111 2.85 0.00 40.43 3.73
237 238 3.104766 CAGTGCCATGCCATCGTC 58.895 61.111 0.00 0.00 0.00 4.20
238 239 1.450848 CAGTGCCATGCCATCGTCT 60.451 57.895 0.00 0.00 0.00 4.18
239 240 1.450848 AGTGCCATGCCATCGTCTG 60.451 57.895 0.00 0.00 0.00 3.51
240 241 2.825387 TGCCATGCCATCGTCTGC 60.825 61.111 0.00 0.00 0.00 4.26
241 242 2.515523 GCCATGCCATCGTCTGCT 60.516 61.111 0.00 0.00 0.00 4.24
242 243 1.227645 GCCATGCCATCGTCTGCTA 60.228 57.895 0.00 0.00 0.00 3.49
243 244 1.502163 GCCATGCCATCGTCTGCTAC 61.502 60.000 0.00 0.00 0.00 3.58
244 245 0.105593 CCATGCCATCGTCTGCTACT 59.894 55.000 0.00 0.00 0.00 2.57
245 246 1.473965 CCATGCCATCGTCTGCTACTT 60.474 52.381 0.00 0.00 0.00 2.24
246 247 1.596260 CATGCCATCGTCTGCTACTTG 59.404 52.381 0.00 0.00 0.00 3.16
247 248 0.108186 TGCCATCGTCTGCTACTTGG 60.108 55.000 0.00 0.00 34.02 3.61
248 249 1.432270 GCCATCGTCTGCTACTTGGC 61.432 60.000 13.60 13.60 43.49 4.52
249 250 0.811616 CCATCGTCTGCTACTTGGCC 60.812 60.000 0.00 0.00 0.00 5.36
250 251 0.176680 CATCGTCTGCTACTTGGCCT 59.823 55.000 3.32 0.00 0.00 5.19
251 252 1.409064 CATCGTCTGCTACTTGGCCTA 59.591 52.381 3.32 0.00 0.00 3.93
252 253 1.103803 TCGTCTGCTACTTGGCCTAG 58.896 55.000 13.05 13.05 0.00 3.02
253 254 0.818296 CGTCTGCTACTTGGCCTAGT 59.182 55.000 23.40 23.40 0.00 2.57
254 255 1.202313 CGTCTGCTACTTGGCCTAGTC 60.202 57.143 23.56 10.88 0.00 2.59
255 256 2.104170 GTCTGCTACTTGGCCTAGTCT 58.896 52.381 23.56 2.65 0.00 3.24
256 257 3.288964 GTCTGCTACTTGGCCTAGTCTA 58.711 50.000 23.56 6.37 0.00 2.59
257 258 3.316868 GTCTGCTACTTGGCCTAGTCTAG 59.683 52.174 23.56 16.76 0.00 2.43
258 259 3.202373 TCTGCTACTTGGCCTAGTCTAGA 59.798 47.826 23.56 19.92 0.00 2.43
259 260 4.141135 TCTGCTACTTGGCCTAGTCTAGAT 60.141 45.833 23.56 0.30 0.00 1.98
260 261 3.891977 TGCTACTTGGCCTAGTCTAGATG 59.108 47.826 23.56 9.02 0.00 2.90
261 262 3.257127 GCTACTTGGCCTAGTCTAGATGG 59.743 52.174 23.56 1.22 0.00 3.51
262 263 3.689872 ACTTGGCCTAGTCTAGATGGA 57.310 47.619 14.58 0.00 0.00 3.41
263 264 3.995636 ACTTGGCCTAGTCTAGATGGAA 58.004 45.455 14.58 0.00 0.00 3.53
264 265 4.362677 ACTTGGCCTAGTCTAGATGGAAA 58.637 43.478 14.58 5.98 0.00 3.13
265 266 4.971924 ACTTGGCCTAGTCTAGATGGAAAT 59.028 41.667 14.58 0.00 0.00 2.17
266 267 4.963318 TGGCCTAGTCTAGATGGAAATG 57.037 45.455 8.56 0.00 0.00 2.32
267 268 4.556697 TGGCCTAGTCTAGATGGAAATGA 58.443 43.478 8.56 0.00 0.00 2.57
268 269 4.345257 TGGCCTAGTCTAGATGGAAATGAC 59.655 45.833 8.56 0.00 0.00 3.06
269 270 4.551388 GCCTAGTCTAGATGGAAATGACG 58.449 47.826 8.56 0.00 33.40 4.35
270 271 4.278669 GCCTAGTCTAGATGGAAATGACGA 59.721 45.833 8.56 0.00 33.40 4.20
271 272 5.764131 CCTAGTCTAGATGGAAATGACGAC 58.236 45.833 8.56 0.00 33.40 4.34
272 273 4.294416 AGTCTAGATGGAAATGACGACG 57.706 45.455 0.00 0.00 33.40 5.12
273 274 3.945921 AGTCTAGATGGAAATGACGACGA 59.054 43.478 0.00 0.00 33.40 4.20
274 275 4.036352 GTCTAGATGGAAATGACGACGAC 58.964 47.826 0.00 0.00 0.00 4.34
275 276 1.909376 AGATGGAAATGACGACGACG 58.091 50.000 5.58 5.58 45.75 5.12
276 277 0.921347 GATGGAAATGACGACGACGG 59.079 55.000 12.58 0.00 44.46 4.79
277 278 0.245539 ATGGAAATGACGACGACGGT 59.754 50.000 12.58 0.00 44.46 4.83
278 279 0.880441 TGGAAATGACGACGACGGTA 59.120 50.000 12.58 0.03 44.46 4.02
279 280 1.262882 GGAAATGACGACGACGGTAC 58.737 55.000 12.58 3.60 44.46 3.34
280 281 1.262882 GAAATGACGACGACGGTACC 58.737 55.000 12.58 0.16 44.46 3.34
281 282 0.597568 AAATGACGACGACGGTACCA 59.402 50.000 13.54 4.53 44.46 3.25
282 283 0.109597 AATGACGACGACGGTACCAC 60.110 55.000 13.54 4.32 44.46 4.16
283 284 0.957395 ATGACGACGACGGTACCACT 60.957 55.000 13.54 0.00 44.46 4.00
284 285 1.154338 GACGACGACGGTACCACTG 60.154 63.158 13.54 2.55 44.46 3.66
285 286 1.568612 GACGACGACGGTACCACTGA 61.569 60.000 13.54 0.00 44.46 3.41
286 287 1.154338 CGACGACGGTACCACTGAC 60.154 63.158 13.54 0.00 35.72 3.51
287 288 1.211190 GACGACGGTACCACTGACC 59.789 63.158 13.54 0.00 0.00 4.02
288 289 1.228367 ACGACGGTACCACTGACCT 60.228 57.895 13.54 0.00 34.56 3.85
289 290 0.825010 ACGACGGTACCACTGACCTT 60.825 55.000 13.54 0.00 34.56 3.50
290 291 0.388134 CGACGGTACCACTGACCTTG 60.388 60.000 13.54 0.00 34.56 3.61
291 292 0.037605 GACGGTACCACTGACCTTGG 60.038 60.000 13.54 0.00 40.32 3.61
292 293 0.470456 ACGGTACCACTGACCTTGGA 60.470 55.000 13.54 0.00 37.58 3.53
293 294 0.246635 CGGTACCACTGACCTTGGAG 59.753 60.000 13.54 0.00 37.58 3.86
294 295 0.613777 GGTACCACTGACCTTGGAGG 59.386 60.000 7.15 0.00 42.49 4.30
295 296 0.036294 GTACCACTGACCTTGGAGGC 60.036 60.000 0.00 0.00 39.63 4.70
296 297 1.198759 TACCACTGACCTTGGAGGCC 61.199 60.000 0.00 0.00 39.63 5.19
297 298 2.528818 CCACTGACCTTGGAGGCCA 61.529 63.158 5.01 0.00 39.63 5.36
298 299 1.687612 CACTGACCTTGGAGGCCAT 59.312 57.895 5.01 0.00 39.63 4.40
299 300 0.679002 CACTGACCTTGGAGGCCATG 60.679 60.000 5.01 0.00 39.63 3.66
300 301 1.751927 CTGACCTTGGAGGCCATGC 60.752 63.158 5.01 0.00 39.63 4.06
310 311 2.590092 GGCCATGCCTACGAGGTT 59.410 61.111 0.00 0.00 46.69 3.50
311 312 1.827394 GGCCATGCCTACGAGGTTA 59.173 57.895 0.00 0.00 46.69 2.85
312 313 0.532196 GGCCATGCCTACGAGGTTAC 60.532 60.000 0.00 0.00 46.69 2.50
313 314 0.464452 GCCATGCCTACGAGGTTACT 59.536 55.000 0.00 0.00 37.80 2.24
314 315 1.806623 GCCATGCCTACGAGGTTACTG 60.807 57.143 0.00 0.00 37.80 2.74
315 316 1.480954 CCATGCCTACGAGGTTACTGT 59.519 52.381 0.00 0.00 37.80 3.55
316 317 2.481449 CCATGCCTACGAGGTTACTGTC 60.481 54.545 0.00 0.00 37.80 3.51
317 318 1.180029 TGCCTACGAGGTTACTGTCC 58.820 55.000 0.00 0.00 37.80 4.02
318 319 0.100146 GCCTACGAGGTTACTGTCCG 59.900 60.000 0.00 0.00 37.80 4.79
319 320 1.457346 CCTACGAGGTTACTGTCCGT 58.543 55.000 0.00 0.00 37.27 4.69
320 321 1.815003 CCTACGAGGTTACTGTCCGTT 59.185 52.381 0.00 0.00 35.05 4.44
321 322 2.415090 CCTACGAGGTTACTGTCCGTTG 60.415 54.545 0.00 0.00 35.05 4.10
322 323 0.316204 ACGAGGTTACTGTCCGTTGG 59.684 55.000 0.00 0.00 0.00 3.77
323 324 0.316204 CGAGGTTACTGTCCGTTGGT 59.684 55.000 0.00 0.00 0.00 3.67
324 325 1.668047 CGAGGTTACTGTCCGTTGGTC 60.668 57.143 0.00 0.00 0.00 4.02
325 326 1.617357 GAGGTTACTGTCCGTTGGTCT 59.383 52.381 0.00 0.00 0.00 3.85
326 327 1.617357 AGGTTACTGTCCGTTGGTCTC 59.383 52.381 0.00 0.00 0.00 3.36
327 328 1.668047 GGTTACTGTCCGTTGGTCTCG 60.668 57.143 0.00 0.00 0.00 4.04
328 329 1.000938 GTTACTGTCCGTTGGTCTCGT 60.001 52.381 0.00 0.00 0.00 4.18
329 330 1.321474 TACTGTCCGTTGGTCTCGTT 58.679 50.000 0.00 0.00 0.00 3.85
330 331 0.031721 ACTGTCCGTTGGTCTCGTTC 59.968 55.000 0.00 0.00 0.00 3.95
331 332 0.031585 CTGTCCGTTGGTCTCGTTCA 59.968 55.000 0.00 0.00 0.00 3.18
332 333 0.249155 TGTCCGTTGGTCTCGTTCAC 60.249 55.000 0.00 0.00 0.00 3.18
333 334 1.008194 TCCGTTGGTCTCGTTCACG 60.008 57.895 0.00 0.00 41.45 4.35
334 335 2.654912 CCGTTGGTCTCGTTCACGC 61.655 63.158 0.00 0.00 39.60 5.34
335 336 2.654912 CGTTGGTCTCGTTCACGCC 61.655 63.158 0.00 0.00 39.60 5.68
336 337 2.355363 TTGGTCTCGTTCACGCCG 60.355 61.111 0.00 0.00 39.60 6.46
337 338 3.141522 TTGGTCTCGTTCACGCCGT 62.142 57.895 0.00 0.00 39.60 5.68
338 339 2.804090 GGTCTCGTTCACGCCGTC 60.804 66.667 0.00 0.00 39.60 4.79
339 340 3.164011 GTCTCGTTCACGCCGTCG 61.164 66.667 0.00 0.00 39.60 5.12
352 353 2.687436 CGTCGTCGGTTTGATCGC 59.313 61.111 0.00 0.00 0.00 4.58
353 354 1.800315 CGTCGTCGGTTTGATCGCT 60.800 57.895 0.00 0.00 0.00 4.93
354 355 0.521867 CGTCGTCGGTTTGATCGCTA 60.522 55.000 0.00 0.00 0.00 4.26
355 356 1.621107 GTCGTCGGTTTGATCGCTAA 58.379 50.000 0.00 0.00 0.00 3.09
356 357 1.987770 GTCGTCGGTTTGATCGCTAAA 59.012 47.619 0.00 0.00 0.00 1.85
357 358 1.987770 TCGTCGGTTTGATCGCTAAAC 59.012 47.619 0.00 0.00 37.31 2.01
358 359 1.990563 CGTCGGTTTGATCGCTAAACT 59.009 47.619 6.99 0.00 37.96 2.66
359 360 3.119884 TCGTCGGTTTGATCGCTAAACTA 60.120 43.478 6.99 0.00 37.96 2.24
360 361 3.609373 CGTCGGTTTGATCGCTAAACTAA 59.391 43.478 6.99 0.00 37.96 2.24
361 362 4.259292 CGTCGGTTTGATCGCTAAACTAAG 60.259 45.833 6.99 1.51 37.96 2.18
362 363 4.032558 GTCGGTTTGATCGCTAAACTAAGG 59.967 45.833 6.99 0.00 37.96 2.69
363 364 3.242316 CGGTTTGATCGCTAAACTAAGGC 60.242 47.826 6.99 0.00 37.96 4.35
364 365 3.687698 GGTTTGATCGCTAAACTAAGGCA 59.312 43.478 6.99 0.00 37.96 4.75
365 366 4.155280 GGTTTGATCGCTAAACTAAGGCAA 59.845 41.667 6.99 0.00 37.96 4.52
366 367 5.163652 GGTTTGATCGCTAAACTAAGGCAAT 60.164 40.000 6.99 0.00 37.96 3.56
367 368 5.484173 TTGATCGCTAAACTAAGGCAATG 57.516 39.130 0.00 0.00 0.00 2.82
368 369 4.513442 TGATCGCTAAACTAAGGCAATGT 58.487 39.130 0.00 0.00 0.00 2.71
369 370 5.666462 TGATCGCTAAACTAAGGCAATGTA 58.334 37.500 0.00 0.00 0.00 2.29
370 371 6.110033 TGATCGCTAAACTAAGGCAATGTAA 58.890 36.000 0.00 0.00 0.00 2.41
371 372 6.257849 TGATCGCTAAACTAAGGCAATGTAAG 59.742 38.462 0.00 0.00 0.00 2.34
372 373 5.484715 TCGCTAAACTAAGGCAATGTAAGT 58.515 37.500 0.00 0.00 0.00 2.24
373 374 6.632909 TCGCTAAACTAAGGCAATGTAAGTA 58.367 36.000 0.00 0.00 0.00 2.24
374 375 7.098477 TCGCTAAACTAAGGCAATGTAAGTAA 58.902 34.615 0.00 0.00 0.00 2.24
375 376 7.603404 TCGCTAAACTAAGGCAATGTAAGTAAA 59.397 33.333 0.00 0.00 0.00 2.01
376 377 8.231837 CGCTAAACTAAGGCAATGTAAGTAAAA 58.768 33.333 0.00 0.00 0.00 1.52
377 378 9.902196 GCTAAACTAAGGCAATGTAAGTAAAAA 57.098 29.630 0.00 0.00 0.00 1.94
404 405 6.884836 ACATATAGAGCATGTATAGTGACCGA 59.115 38.462 0.00 0.00 34.88 4.69
497 499 1.741706 CTGCTCCTATTGCAACCACAG 59.258 52.381 0.00 0.19 40.13 3.66
502 504 1.468520 CCTATTGCAACCACAGGAACG 59.531 52.381 0.00 0.00 0.00 3.95
525 527 4.320202 GCAGTCTGAATTCTGGCGTAAAAA 60.320 41.667 10.78 0.00 32.94 1.94
534 536 4.513198 TCTGGCGTAAAAATGGAAAAGG 57.487 40.909 0.00 0.00 0.00 3.11
543 545 7.151976 CGTAAAAATGGAAAAGGGAGAAATGT 58.848 34.615 0.00 0.00 0.00 2.71
544 546 8.301002 CGTAAAAATGGAAAAGGGAGAAATGTA 58.699 33.333 0.00 0.00 0.00 2.29
591 593 1.376543 GCTCCATCACACCACTCATG 58.623 55.000 0.00 0.00 0.00 3.07
643 646 1.817209 GAAGAGGGGTCTACGCAGG 59.183 63.158 0.00 0.00 33.80 4.85
644 647 2.299503 GAAGAGGGGTCTACGCAGGC 62.300 65.000 0.00 0.00 33.80 4.85
645 648 3.851128 GAGGGGTCTACGCAGGCC 61.851 72.222 0.00 0.00 46.74 5.19
649 652 2.125512 GGTCTACGCAGGCCACTG 60.126 66.667 5.01 0.00 46.69 3.66
650 653 2.125512 GTCTACGCAGGCCACTGG 60.126 66.667 5.01 0.00 45.04 4.00
684 687 3.716006 CCCGAGCACACAACGCAG 61.716 66.667 0.00 0.00 0.00 5.18
685 688 4.374702 CCGAGCACACAACGCAGC 62.375 66.667 0.00 0.00 0.00 5.25
690 693 2.352686 CACACAACGCAGCTGCAC 60.353 61.111 36.03 10.45 42.21 4.57
699 702 2.643272 CAGCTGCACTGCAACCAG 59.357 61.111 0.00 4.12 44.80 4.00
707 710 0.675083 CACTGCAACCAGCCAATCAA 59.325 50.000 0.00 0.00 43.02 2.57
805 809 2.125552 CCGCAGATCCAACGCTCA 60.126 61.111 0.00 0.00 0.00 4.26
811 815 2.266554 CAGATCCAACGCTCAGAACTC 58.733 52.381 0.00 0.00 0.00 3.01
812 816 1.205893 AGATCCAACGCTCAGAACTCC 59.794 52.381 0.00 0.00 0.00 3.85
813 817 0.976641 ATCCAACGCTCAGAACTCCA 59.023 50.000 0.00 0.00 0.00 3.86
815 819 0.034059 CCAACGCTCAGAACTCCACT 59.966 55.000 0.00 0.00 0.00 4.00
908 915 1.300971 GCTCGTTAAAACCCCCGGAC 61.301 60.000 0.73 0.00 0.00 4.79
957 964 1.470098 CCAAATCTCCCAAGCAGTTCG 59.530 52.381 0.00 0.00 0.00 3.95
960 967 0.108615 ATCTCCCAAGCAGTTCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
1729 1757 4.402793 GGAGGTGTAGAGATGTTAGCTTCA 59.597 45.833 0.00 0.00 0.00 3.02
1732 1760 5.658634 AGGTGTAGAGATGTTAGCTTCATCA 59.341 40.000 23.76 7.88 42.63 3.07
1767 1809 4.341235 TGATCTTGTATCGTGGTAGGAAGG 59.659 45.833 0.00 0.00 0.00 3.46
1781 1825 1.080025 GAAGGTCCCTCGTTCGTGG 60.080 63.158 6.37 6.37 32.57 4.94
1786 1830 1.303888 TCCCTCGTTCGTGGTAGCT 60.304 57.895 11.38 0.00 0.00 3.32
1897 2030 1.472082 CTTTGTGATGCCCATTGCGTA 59.528 47.619 0.00 0.00 45.60 4.42
1901 2034 2.103941 TGTGATGCCCATTGCGTAGATA 59.896 45.455 0.00 0.00 45.60 1.98
1903 2036 2.632512 TGATGCCCATTGCGTAGATAGA 59.367 45.455 0.00 0.00 45.60 1.98
1910 2043 5.239525 GCCCATTGCGTAGATAGAAATTTCT 59.760 40.000 23.53 23.53 41.24 2.52
1915 2048 7.915293 TTGCGTAGATAGAAATTTCTTGGAA 57.085 32.000 25.02 8.37 38.70 3.53
1919 2052 9.788960 GCGTAGATAGAAATTTCTTGGAATTTT 57.211 29.630 25.02 8.40 38.85 1.82
1925 2058 9.783081 ATAGAAATTTCTTGGAATTTTGTGCTT 57.217 25.926 25.02 0.00 38.85 3.91
1926 2059 8.146479 AGAAATTTCTTGGAATTTTGTGCTTC 57.854 30.769 15.11 0.00 38.85 3.86
1927 2060 6.529463 AATTTCTTGGAATTTTGTGCTTCG 57.471 33.333 0.00 0.00 0.00 3.79
1928 2061 3.011949 TCTTGGAATTTTGTGCTTCGC 57.988 42.857 0.00 0.00 0.00 4.70
1929 2062 1.715519 CTTGGAATTTTGTGCTTCGCG 59.284 47.619 0.00 0.00 0.00 5.87
1930 2063 0.947960 TGGAATTTTGTGCTTCGCGA 59.052 45.000 3.71 3.71 0.00 5.87
1931 2064 1.539388 TGGAATTTTGTGCTTCGCGAT 59.461 42.857 10.88 0.00 0.00 4.58
1932 2065 1.913403 GGAATTTTGTGCTTCGCGATG 59.087 47.619 10.88 14.54 0.00 3.84
1933 2066 1.318491 GAATTTTGTGCTTCGCGATGC 59.682 47.619 32.85 32.85 0.00 3.91
1934 2067 0.456653 ATTTTGTGCTTCGCGATGCC 60.457 50.000 34.98 27.28 0.00 4.40
1936 2069 1.514678 TTTGTGCTTCGCGATGCCTT 61.515 50.000 34.98 0.00 0.00 4.35
1937 2070 1.514678 TTGTGCTTCGCGATGCCTTT 61.515 50.000 34.98 0.00 0.00 3.11
1938 2071 1.210155 GTGCTTCGCGATGCCTTTT 59.790 52.632 34.98 0.00 0.00 2.27
1939 2072 1.067199 GTGCTTCGCGATGCCTTTTG 61.067 55.000 34.98 10.44 0.00 2.44
1940 2073 2.154569 GCTTCGCGATGCCTTTTGC 61.155 57.895 30.48 12.36 41.77 3.68
1942 2075 3.944526 TTCGCGATGCCTTTTGCGC 62.945 57.895 10.88 0.00 46.70 6.09
1943 2076 4.465512 CGCGATGCCTTTTGCGCT 62.466 61.111 9.73 0.00 46.54 5.92
1944 2077 2.577911 GCGATGCCTTTTGCGCTC 60.578 61.111 9.73 0.00 45.41 5.03
1945 2078 2.276868 CGATGCCTTTTGCGCTCG 60.277 61.111 9.73 2.46 45.60 5.03
1946 2079 2.870372 GATGCCTTTTGCGCTCGT 59.130 55.556 9.73 0.00 45.60 4.18
1947 2080 1.512734 GATGCCTTTTGCGCTCGTG 60.513 57.895 9.73 0.00 45.60 4.35
1948 2081 3.615536 ATGCCTTTTGCGCTCGTGC 62.616 57.895 9.73 5.73 45.60 5.34
1949 2082 4.030452 GCCTTTTGCGCTCGTGCT 62.030 61.111 9.73 0.00 36.97 4.40
1950 2083 2.127118 CCTTTTGCGCTCGTGCTG 60.127 61.111 9.73 2.68 36.97 4.41
1951 2084 2.633657 CTTTTGCGCTCGTGCTGT 59.366 55.556 9.73 0.00 36.97 4.40
1952 2085 1.009675 CTTTTGCGCTCGTGCTGTT 60.010 52.632 9.73 0.00 36.97 3.16
1953 2086 0.592247 CTTTTGCGCTCGTGCTGTTT 60.592 50.000 9.73 0.00 36.97 2.83
1954 2087 0.865218 TTTTGCGCTCGTGCTGTTTG 60.865 50.000 9.73 0.00 36.97 2.93
1955 2088 3.805385 TTGCGCTCGTGCTGTTTGC 62.805 57.895 9.73 3.75 43.25 3.68
1967 2100 1.985684 GCTGTTTGCAAACCTTATCGC 59.014 47.619 33.33 22.29 42.31 4.58
1968 2101 2.241722 CTGTTTGCAAACCTTATCGCG 58.758 47.619 33.33 0.00 38.11 5.87
1969 2102 1.604755 TGTTTGCAAACCTTATCGCGT 59.395 42.857 33.33 0.00 38.11 6.01
1970 2103 2.033550 TGTTTGCAAACCTTATCGCGTT 59.966 40.909 33.33 0.00 38.11 4.84
1971 2104 2.323939 TTGCAAACCTTATCGCGTTG 57.676 45.000 5.77 2.05 0.00 4.10
1972 2105 1.514003 TGCAAACCTTATCGCGTTGA 58.486 45.000 5.77 0.00 0.00 3.18
1973 2106 1.874231 TGCAAACCTTATCGCGTTGAA 59.126 42.857 5.77 0.00 0.00 2.69
1974 2107 2.290916 TGCAAACCTTATCGCGTTGAAA 59.709 40.909 5.77 0.00 0.00 2.69
1975 2108 2.908626 GCAAACCTTATCGCGTTGAAAG 59.091 45.455 5.77 5.80 0.00 2.62
1976 2109 3.364565 GCAAACCTTATCGCGTTGAAAGA 60.365 43.478 5.77 0.00 0.00 2.52
1977 2110 4.778904 CAAACCTTATCGCGTTGAAAGAA 58.221 39.130 5.77 0.00 0.00 2.52
1978 2111 5.209240 CAAACCTTATCGCGTTGAAAGAAA 58.791 37.500 5.77 0.00 0.00 2.52
1979 2112 5.622770 AACCTTATCGCGTTGAAAGAAAT 57.377 34.783 5.77 0.00 0.00 2.17
1980 2113 5.622770 ACCTTATCGCGTTGAAAGAAATT 57.377 34.783 5.77 0.00 0.00 1.82
1981 2114 6.009115 ACCTTATCGCGTTGAAAGAAATTT 57.991 33.333 5.77 0.00 0.00 1.82
1982 2115 6.084277 ACCTTATCGCGTTGAAAGAAATTTC 58.916 36.000 10.33 10.33 0.00 2.17
1983 2116 6.072673 ACCTTATCGCGTTGAAAGAAATTTCT 60.073 34.615 15.11 15.11 39.74 2.52
1985 2118 7.201266 CCTTATCGCGTTGAAAGAAATTTCTTG 60.201 37.037 29.31 18.87 46.22 3.02
1986 2119 3.728718 TCGCGTTGAAAGAAATTTCTTGC 59.271 39.130 29.31 27.71 46.22 4.01
2003 2136 0.323302 TGCAACCTGATAAGTGGCGA 59.677 50.000 0.00 0.00 36.94 5.54
2032 2165 3.699038 CCTCCAGTTTTCAGTTTGTTCCA 59.301 43.478 0.00 0.00 0.00 3.53
2034 2167 5.163416 CCTCCAGTTTTCAGTTTGTTCCATT 60.163 40.000 0.00 0.00 0.00 3.16
2035 2168 6.040391 CCTCCAGTTTTCAGTTTGTTCCATTA 59.960 38.462 0.00 0.00 0.00 1.90
2042 2175 9.522804 GTTTTCAGTTTGTTCCATTACATGTTA 57.477 29.630 2.30 0.00 0.00 2.41
2045 2178 9.906660 TTCAGTTTGTTCCATTACATGTTATTC 57.093 29.630 2.30 0.00 0.00 1.75
2046 2179 8.519526 TCAGTTTGTTCCATTACATGTTATTCC 58.480 33.333 2.30 0.00 0.00 3.01
2047 2180 8.303156 CAGTTTGTTCCATTACATGTTATTCCA 58.697 33.333 2.30 0.00 0.00 3.53
2048 2181 8.303876 AGTTTGTTCCATTACATGTTATTCCAC 58.696 33.333 2.30 0.00 0.00 4.02
2049 2182 8.303876 GTTTGTTCCATTACATGTTATTCCACT 58.696 33.333 2.30 0.00 0.00 4.00
2050 2183 7.389803 TGTTCCATTACATGTTATTCCACTG 57.610 36.000 2.30 0.00 0.00 3.66
2052 2185 7.094420 TGTTCCATTACATGTTATTCCACTGTG 60.094 37.037 2.30 0.00 0.00 3.66
2053 2186 6.716284 TCCATTACATGTTATTCCACTGTGA 58.284 36.000 9.86 0.00 0.00 3.58
2054 2187 7.345691 TCCATTACATGTTATTCCACTGTGAT 58.654 34.615 9.86 0.00 0.00 3.06
2055 2188 7.282901 TCCATTACATGTTATTCCACTGTGATG 59.717 37.037 9.86 5.66 35.06 3.07
2056 2189 4.970662 ACATGTTATTCCACTGTGATGC 57.029 40.909 9.86 0.00 0.00 3.91
2057 2190 4.592942 ACATGTTATTCCACTGTGATGCT 58.407 39.130 9.86 0.00 0.00 3.79
2058 2191 5.744171 ACATGTTATTCCACTGTGATGCTA 58.256 37.500 9.86 0.00 0.00 3.49
2059 2192 5.819379 ACATGTTATTCCACTGTGATGCTAG 59.181 40.000 9.86 0.00 0.00 3.42
2077 2210 7.994911 TGATGCTAGTGGAATGAATCTTGTATT 59.005 33.333 0.00 0.00 0.00 1.89
2085 2218 9.565213 GTGGAATGAATCTTGTATTCTTTGAAG 57.435 33.333 4.25 0.00 32.74 3.02
2086 2219 8.246180 TGGAATGAATCTTGTATTCTTTGAAGC 58.754 33.333 4.25 0.00 32.74 3.86
2096 2229 3.492102 TTCTTTGAAGCCTAGTGCACT 57.508 42.857 25.12 25.12 44.83 4.40
2102 2235 2.568956 TGAAGCCTAGTGCACTGATCTT 59.431 45.455 29.57 24.60 44.83 2.40
2103 2236 3.008375 TGAAGCCTAGTGCACTGATCTTT 59.992 43.478 29.57 15.89 44.83 2.52
2104 2237 3.710209 AGCCTAGTGCACTGATCTTTT 57.290 42.857 29.57 2.60 44.83 2.27
2113 2246 6.211515 AGTGCACTGATCTTTTTGATTTGAC 58.788 36.000 20.97 0.00 35.14 3.18
2117 2250 6.364435 GCACTGATCTTTTTGATTTGACCTTC 59.636 38.462 0.00 0.00 35.14 3.46
2118 2251 7.428020 CACTGATCTTTTTGATTTGACCTTCA 58.572 34.615 0.00 0.00 35.14 3.02
2119 2252 7.380602 CACTGATCTTTTTGATTTGACCTTCAC 59.619 37.037 0.00 0.00 35.14 3.18
2120 2253 7.068593 ACTGATCTTTTTGATTTGACCTTCACA 59.931 33.333 0.00 0.00 35.14 3.58
2121 2254 7.954835 TGATCTTTTTGATTTGACCTTCACAT 58.045 30.769 0.00 0.00 35.14 3.21
2122 2255 8.084073 TGATCTTTTTGATTTGACCTTCACATC 58.916 33.333 0.00 0.00 34.92 3.06
2123 2256 7.587037 TCTTTTTGATTTGACCTTCACATCT 57.413 32.000 4.44 0.00 35.28 2.90
2124 2257 8.010733 TCTTTTTGATTTGACCTTCACATCTT 57.989 30.769 4.44 0.00 35.28 2.40
2125 2258 7.922278 TCTTTTTGATTTGACCTTCACATCTTG 59.078 33.333 4.44 0.00 35.28 3.02
2126 2259 6.713762 TTTGATTTGACCTTCACATCTTGT 57.286 33.333 4.44 0.00 35.28 3.16
2127 2260 6.713762 TTGATTTGACCTTCACATCTTGTT 57.286 33.333 4.44 0.00 35.28 2.83
2128 2261 7.815840 TTGATTTGACCTTCACATCTTGTTA 57.184 32.000 4.44 0.00 35.28 2.41
2129 2262 8.408043 TTGATTTGACCTTCACATCTTGTTAT 57.592 30.769 4.44 0.00 35.28 1.89
2130 2263 8.408043 TGATTTGACCTTCACATCTTGTTATT 57.592 30.769 4.44 0.00 35.28 1.40
2131 2264 8.298854 TGATTTGACCTTCACATCTTGTTATTG 58.701 33.333 4.44 0.00 35.28 1.90
2132 2265 7.815840 TTTGACCTTCACATCTTGTTATTGA 57.184 32.000 0.00 0.00 0.00 2.57
2133 2266 7.815840 TTGACCTTCACATCTTGTTATTGAA 57.184 32.000 0.00 0.00 0.00 2.69
2134 2267 7.815840 TGACCTTCACATCTTGTTATTGAAA 57.184 32.000 0.00 0.00 0.00 2.69
2135 2268 7.648142 TGACCTTCACATCTTGTTATTGAAAC 58.352 34.615 0.00 0.00 0.00 2.78
2136 2269 7.284261 TGACCTTCACATCTTGTTATTGAAACA 59.716 33.333 0.00 0.00 0.00 2.83
2137 2270 7.425606 ACCTTCACATCTTGTTATTGAAACAC 58.574 34.615 0.00 0.00 0.00 3.32
2138 2271 7.285401 ACCTTCACATCTTGTTATTGAAACACT 59.715 33.333 0.00 0.00 0.00 3.55
2139 2272 8.137437 CCTTCACATCTTGTTATTGAAACACTT 58.863 33.333 0.00 0.00 0.00 3.16
2140 2273 8.854979 TTCACATCTTGTTATTGAAACACTTG 57.145 30.769 0.00 0.00 0.00 3.16
2141 2274 8.219546 TCACATCTTGTTATTGAAACACTTGA 57.780 30.769 0.00 0.00 0.00 3.02
2142 2275 8.681806 TCACATCTTGTTATTGAAACACTTGAA 58.318 29.630 0.00 0.00 0.00 2.69
2143 2276 8.961092 CACATCTTGTTATTGAAACACTTGAAG 58.039 33.333 0.00 0.00 0.00 3.02
2144 2277 8.686334 ACATCTTGTTATTGAAACACTTGAAGT 58.314 29.630 0.00 0.00 0.00 3.01
2145 2278 9.520204 CATCTTGTTATTGAAACACTTGAAGTT 57.480 29.630 0.00 0.00 0.00 2.66
2490 2630 6.377080 TCTGAGATCCAGCTTCTCCTTAATA 58.623 40.000 10.67 0.00 42.62 0.98
2505 2645 8.302515 TCTCCTTAATAAAGTGACGGTCTATT 57.697 34.615 9.88 7.49 0.00 1.73
2557 2697 5.163301 ACAGGATTGTTAGCAATATCGAGGT 60.163 40.000 4.64 1.20 44.61 3.85
2583 2723 6.260050 CCGCCTTATTATCACAGTACAACATT 59.740 38.462 0.00 0.00 0.00 2.71
2648 2788 5.538813 TCCGTAGCCATAATACTTCACAGAT 59.461 40.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.348218 GGAGTTACGCGTTGAAACAGTG 60.348 50.000 20.78 0.00 0.00 3.66
2 3 1.862201 TGGAGTTACGCGTTGAAACAG 59.138 47.619 20.78 0.00 0.00 3.16
3 4 1.937278 TGGAGTTACGCGTTGAAACA 58.063 45.000 20.78 9.43 0.00 2.83
4 5 2.286025 ACTTGGAGTTACGCGTTGAAAC 59.714 45.455 20.78 16.67 0.00 2.78
6 7 2.228138 ACTTGGAGTTACGCGTTGAA 57.772 45.000 20.78 2.89 0.00 2.69
7 8 1.862201 CAACTTGGAGTTACGCGTTGA 59.138 47.619 20.78 3.44 36.03 3.18
8 9 1.070175 CCAACTTGGAGTTACGCGTTG 60.070 52.381 20.78 4.97 40.96 4.10
10 11 0.601841 CCCAACTTGGAGTTACGCGT 60.602 55.000 19.17 19.17 40.96 6.01
11 12 1.908066 GCCCAACTTGGAGTTACGCG 61.908 60.000 9.61 3.53 40.96 6.01
12 13 0.605589 AGCCCAACTTGGAGTTACGC 60.606 55.000 9.61 3.06 40.96 4.42
13 14 1.156736 CAGCCCAACTTGGAGTTACG 58.843 55.000 9.61 0.00 40.96 3.18
14 15 1.202891 ACCAGCCCAACTTGGAGTTAC 60.203 52.381 9.61 0.00 40.96 2.50
15 16 1.073284 GACCAGCCCAACTTGGAGTTA 59.927 52.381 9.61 0.00 40.96 2.24
16 17 0.178990 GACCAGCCCAACTTGGAGTT 60.179 55.000 9.61 0.00 40.96 3.01
17 18 1.456287 GACCAGCCCAACTTGGAGT 59.544 57.895 9.61 1.35 40.96 3.85
18 19 1.672356 CGACCAGCCCAACTTGGAG 60.672 63.158 9.61 0.96 40.96 3.86
19 20 2.111999 CTCGACCAGCCCAACTTGGA 62.112 60.000 9.61 0.00 40.96 3.53
20 21 1.672356 CTCGACCAGCCCAACTTGG 60.672 63.158 0.12 0.12 37.25 3.61
21 22 0.951040 GACTCGACCAGCCCAACTTG 60.951 60.000 0.00 0.00 0.00 3.16
22 23 1.122019 AGACTCGACCAGCCCAACTT 61.122 55.000 0.00 0.00 0.00 2.66
23 24 1.534235 AGACTCGACCAGCCCAACT 60.534 57.895 0.00 0.00 0.00 3.16
24 25 1.374758 CAGACTCGACCAGCCCAAC 60.375 63.158 0.00 0.00 0.00 3.77
25 26 1.533033 TCAGACTCGACCAGCCCAA 60.533 57.895 0.00 0.00 0.00 4.12
26 27 1.979155 CTCAGACTCGACCAGCCCA 60.979 63.158 0.00 0.00 0.00 5.36
27 28 2.716017 CCTCAGACTCGACCAGCCC 61.716 68.421 0.00 0.00 0.00 5.19
28 29 2.716017 CCCTCAGACTCGACCAGCC 61.716 68.421 0.00 0.00 0.00 4.85
29 30 2.888863 CCCTCAGACTCGACCAGC 59.111 66.667 0.00 0.00 0.00 4.85
30 31 1.979155 TGCCCTCAGACTCGACCAG 60.979 63.158 0.00 0.00 0.00 4.00
31 32 2.117423 TGCCCTCAGACTCGACCA 59.883 61.111 0.00 0.00 0.00 4.02
32 33 2.574399 GTGCCCTCAGACTCGACC 59.426 66.667 0.00 0.00 0.00 4.79
33 34 2.179517 CGTGCCCTCAGACTCGAC 59.820 66.667 0.00 0.00 0.00 4.20
34 35 3.062466 CCGTGCCCTCAGACTCGA 61.062 66.667 0.00 0.00 0.00 4.04
35 36 2.820767 GAACCGTGCCCTCAGACTCG 62.821 65.000 0.00 0.00 0.00 4.18
36 37 1.079750 GAACCGTGCCCTCAGACTC 60.080 63.158 0.00 0.00 0.00 3.36
37 38 2.932234 CGAACCGTGCCCTCAGACT 61.932 63.158 0.00 0.00 0.00 3.24
38 39 2.432628 CGAACCGTGCCCTCAGAC 60.433 66.667 0.00 0.00 0.00 3.51
39 40 2.915659 ACGAACCGTGCCCTCAGA 60.916 61.111 0.00 0.00 39.18 3.27
40 41 2.432628 GACGAACCGTGCCCTCAG 60.433 66.667 0.00 0.00 41.37 3.35
41 42 2.798364 TTGACGAACCGTGCCCTCA 61.798 57.895 0.00 0.00 41.37 3.86
42 43 2.029964 TTGACGAACCGTGCCCTC 59.970 61.111 0.00 0.00 41.37 4.30
43 44 2.280592 GTTGACGAACCGTGCCCT 60.281 61.111 0.00 0.00 41.37 5.19
44 45 2.113131 CTTGTTGACGAACCGTGCCC 62.113 60.000 0.00 0.00 41.37 5.36
45 46 1.278637 CTTGTTGACGAACCGTGCC 59.721 57.895 0.00 0.00 41.37 5.01
46 47 0.375803 AACTTGTTGACGAACCGTGC 59.624 50.000 0.00 0.00 41.37 5.34
47 48 1.267832 CCAACTTGTTGACGAACCGTG 60.268 52.381 14.30 0.00 41.37 4.94
48 49 1.011333 CCAACTTGTTGACGAACCGT 58.989 50.000 14.30 0.00 45.10 4.83
49 50 1.011333 ACCAACTTGTTGACGAACCG 58.989 50.000 14.30 0.00 0.00 4.44
50 51 2.011222 TCACCAACTTGTTGACGAACC 58.989 47.619 14.30 0.00 0.00 3.62
51 52 3.963383 ATCACCAACTTGTTGACGAAC 57.037 42.857 14.30 0.00 0.00 3.95
52 53 4.062293 CCTATCACCAACTTGTTGACGAA 58.938 43.478 14.30 0.00 0.00 3.85
53 54 3.659786 CCTATCACCAACTTGTTGACGA 58.340 45.455 14.30 10.22 0.00 4.20
54 55 2.159627 GCCTATCACCAACTTGTTGACG 59.840 50.000 14.30 5.63 0.00 4.35
55 56 2.159627 CGCCTATCACCAACTTGTTGAC 59.840 50.000 14.30 0.00 0.00 3.18
56 57 2.422597 CGCCTATCACCAACTTGTTGA 58.577 47.619 14.30 0.00 0.00 3.18
57 58 1.468520 CCGCCTATCACCAACTTGTTG 59.531 52.381 6.52 6.52 0.00 3.33
58 59 1.073284 ACCGCCTATCACCAACTTGTT 59.927 47.619 0.00 0.00 0.00 2.83
59 60 0.690762 ACCGCCTATCACCAACTTGT 59.309 50.000 0.00 0.00 0.00 3.16
60 61 1.086696 CACCGCCTATCACCAACTTG 58.913 55.000 0.00 0.00 0.00 3.16
61 62 0.676782 GCACCGCCTATCACCAACTT 60.677 55.000 0.00 0.00 0.00 2.66
62 63 1.078426 GCACCGCCTATCACCAACT 60.078 57.895 0.00 0.00 0.00 3.16
63 64 1.369091 CTGCACCGCCTATCACCAAC 61.369 60.000 0.00 0.00 0.00 3.77
64 65 1.078497 CTGCACCGCCTATCACCAA 60.078 57.895 0.00 0.00 0.00 3.67
65 66 2.584064 CTGCACCGCCTATCACCA 59.416 61.111 0.00 0.00 0.00 4.17
66 67 2.203070 CCTGCACCGCCTATCACC 60.203 66.667 0.00 0.00 0.00 4.02
67 68 2.203070 CCCTGCACCGCCTATCAC 60.203 66.667 0.00 0.00 0.00 3.06
68 69 4.175337 GCCCTGCACCGCCTATCA 62.175 66.667 0.00 0.00 0.00 2.15
77 78 4.459089 GACTCCTCCGCCCTGCAC 62.459 72.222 0.00 0.00 0.00 4.57
80 81 3.068691 TTCGACTCCTCCGCCCTG 61.069 66.667 0.00 0.00 0.00 4.45
81 82 3.069318 GTTCGACTCCTCCGCCCT 61.069 66.667 0.00 0.00 0.00 5.19
82 83 4.144703 GGTTCGACTCCTCCGCCC 62.145 72.222 0.00 0.00 0.00 6.13
83 84 4.493747 CGGTTCGACTCCTCCGCC 62.494 72.222 4.63 0.00 36.68 6.13
84 85 3.680338 GACGGTTCGACTCCTCCGC 62.680 68.421 10.53 3.15 45.76 5.54
85 86 2.039405 AGACGGTTCGACTCCTCCG 61.039 63.158 9.49 9.49 46.98 4.63
86 87 1.507174 CAGACGGTTCGACTCCTCC 59.493 63.158 4.63 0.00 28.78 4.30
87 88 1.153997 GCAGACGGTTCGACTCCTC 60.154 63.158 4.63 2.27 28.78 3.71
88 89 2.637383 GGCAGACGGTTCGACTCCT 61.637 63.158 4.63 0.00 28.78 3.69
89 90 2.126031 GGCAGACGGTTCGACTCC 60.126 66.667 0.00 0.00 28.78 3.85
90 91 2.126031 GGGCAGACGGTTCGACTC 60.126 66.667 0.00 0.00 28.78 3.36
91 92 3.692406 GGGGCAGACGGTTCGACT 61.692 66.667 0.00 0.00 31.64 4.18
106 107 4.758251 TGGTGTCATGCTCGCGGG 62.758 66.667 6.13 2.60 0.00 6.13
107 108 3.490759 GTGGTGTCATGCTCGCGG 61.491 66.667 6.13 0.00 0.00 6.46
108 109 3.842126 CGTGGTGTCATGCTCGCG 61.842 66.667 0.00 0.00 0.00 5.87
109 110 1.756375 GATCGTGGTGTCATGCTCGC 61.756 60.000 0.00 0.00 0.00 5.03
110 111 1.474648 CGATCGTGGTGTCATGCTCG 61.475 60.000 7.03 0.00 40.51 5.03
111 112 1.148157 CCGATCGTGGTGTCATGCTC 61.148 60.000 15.09 0.00 0.00 4.26
112 113 1.153568 CCGATCGTGGTGTCATGCT 60.154 57.895 15.09 0.00 0.00 3.79
113 114 1.148157 CTCCGATCGTGGTGTCATGC 61.148 60.000 15.09 0.00 0.00 4.06
114 115 0.455815 TCTCCGATCGTGGTGTCATG 59.544 55.000 15.09 0.00 0.00 3.07
115 116 0.741326 CTCTCCGATCGTGGTGTCAT 59.259 55.000 15.09 0.00 0.00 3.06
116 117 1.313091 CCTCTCCGATCGTGGTGTCA 61.313 60.000 15.09 0.00 0.00 3.58
117 118 1.433879 CCTCTCCGATCGTGGTGTC 59.566 63.158 15.09 0.00 0.00 3.67
118 119 2.052690 CCCTCTCCGATCGTGGTGT 61.053 63.158 15.09 0.00 0.00 4.16
119 120 1.109920 ATCCCTCTCCGATCGTGGTG 61.110 60.000 15.09 6.96 0.00 4.17
120 121 1.109920 CATCCCTCTCCGATCGTGGT 61.110 60.000 15.09 0.00 0.00 4.16
121 122 1.662608 CATCCCTCTCCGATCGTGG 59.337 63.158 15.09 10.12 0.00 4.94
122 123 1.006805 GCATCCCTCTCCGATCGTG 60.007 63.158 15.09 6.69 0.00 4.35
123 124 2.203771 GGCATCCCTCTCCGATCGT 61.204 63.158 15.09 0.00 0.00 3.73
124 125 2.653702 GGCATCCCTCTCCGATCG 59.346 66.667 8.51 8.51 0.00 3.69
125 126 2.653702 CGGCATCCCTCTCCGATC 59.346 66.667 0.00 0.00 45.53 3.69
126 127 3.620785 GCGGCATCCCTCTCCGAT 61.621 66.667 3.91 0.00 45.53 4.18
129 130 4.593864 GTCGCGGCATCCCTCTCC 62.594 72.222 5.47 0.00 0.00 3.71
130 131 4.933064 CGTCGCGGCATCCCTCTC 62.933 72.222 12.89 0.00 0.00 3.20
147 148 4.882396 GAGGAAGGCGCTCGAGGC 62.882 72.222 15.58 15.31 37.64 4.70
148 149 2.897641 CTTGAGGAAGGCGCTCGAGG 62.898 65.000 15.58 5.53 0.00 4.63
149 150 1.518133 CTTGAGGAAGGCGCTCGAG 60.518 63.158 8.45 8.45 0.00 4.04
150 151 2.276116 ACTTGAGGAAGGCGCTCGA 61.276 57.895 7.64 0.00 32.95 4.04
151 152 2.097038 CACTTGAGGAAGGCGCTCG 61.097 63.158 7.64 0.00 32.95 5.03
152 153 1.743252 CCACTTGAGGAAGGCGCTC 60.743 63.158 7.64 0.00 32.95 5.03
153 154 2.348998 CCACTTGAGGAAGGCGCT 59.651 61.111 7.64 0.00 32.95 5.92
154 155 2.032681 ACCACTTGAGGAAGGCGC 59.967 61.111 0.00 0.00 32.95 6.53
155 156 2.328099 GCACCACTTGAGGAAGGCG 61.328 63.158 0.00 0.00 32.95 5.52
156 157 2.328099 CGCACCACTTGAGGAAGGC 61.328 63.158 0.00 0.00 32.95 4.35
157 158 3.972227 CGCACCACTTGAGGAAGG 58.028 61.111 0.00 0.00 32.95 3.46
162 163 3.716006 CGCACCGCACCACTTGAG 61.716 66.667 0.00 0.00 0.00 3.02
163 164 4.228567 TCGCACCGCACCACTTGA 62.229 61.111 0.00 0.00 0.00 3.02
164 165 4.012895 GTCGCACCGCACCACTTG 62.013 66.667 0.00 0.00 0.00 3.16
165 166 4.539083 TGTCGCACCGCACCACTT 62.539 61.111 0.00 0.00 0.00 3.16
166 167 4.539083 TTGTCGCACCGCACCACT 62.539 61.111 0.00 0.00 0.00 4.00
167 168 3.521308 CTTTGTCGCACCGCACCAC 62.521 63.158 0.00 0.00 0.00 4.16
168 169 3.276091 CTTTGTCGCACCGCACCA 61.276 61.111 0.00 0.00 0.00 4.17
169 170 1.852067 AATCTTTGTCGCACCGCACC 61.852 55.000 0.00 0.00 0.00 5.01
170 171 0.725784 CAATCTTTGTCGCACCGCAC 60.726 55.000 0.00 0.00 0.00 5.34
171 172 1.573932 CAATCTTTGTCGCACCGCA 59.426 52.632 0.00 0.00 0.00 5.69
172 173 1.797537 GCAATCTTTGTCGCACCGC 60.798 57.895 0.00 0.00 0.00 5.68
173 174 0.179215 GAGCAATCTTTGTCGCACCG 60.179 55.000 0.00 0.00 0.00 4.94
174 175 0.874390 TGAGCAATCTTTGTCGCACC 59.126 50.000 0.00 0.00 0.00 5.01
175 176 1.800586 TCTGAGCAATCTTTGTCGCAC 59.199 47.619 0.00 0.00 0.00 5.34
176 177 1.800586 GTCTGAGCAATCTTTGTCGCA 59.199 47.619 0.00 0.00 0.00 5.10
177 178 1.800586 TGTCTGAGCAATCTTTGTCGC 59.199 47.619 0.00 0.00 0.00 5.19
178 179 4.472691 TTTGTCTGAGCAATCTTTGTCG 57.527 40.909 0.00 0.00 0.00 4.35
179 180 5.172053 CGTTTTTGTCTGAGCAATCTTTGTC 59.828 40.000 0.00 0.00 0.00 3.18
180 181 5.036737 CGTTTTTGTCTGAGCAATCTTTGT 58.963 37.500 0.00 0.00 0.00 2.83
181 182 5.172053 GTCGTTTTTGTCTGAGCAATCTTTG 59.828 40.000 0.00 0.00 0.00 2.77
182 183 5.066505 AGTCGTTTTTGTCTGAGCAATCTTT 59.933 36.000 0.00 0.00 0.00 2.52
183 184 4.576463 AGTCGTTTTTGTCTGAGCAATCTT 59.424 37.500 0.00 0.00 0.00 2.40
184 185 4.130118 AGTCGTTTTTGTCTGAGCAATCT 58.870 39.130 0.00 0.00 0.00 2.40
185 186 4.474226 AGTCGTTTTTGTCTGAGCAATC 57.526 40.909 0.00 0.00 0.00 2.67
186 187 5.700832 TCATAGTCGTTTTTGTCTGAGCAAT 59.299 36.000 0.00 0.00 0.00 3.56
187 188 5.050363 GTCATAGTCGTTTTTGTCTGAGCAA 60.050 40.000 0.00 0.00 0.00 3.91
188 189 4.447724 GTCATAGTCGTTTTTGTCTGAGCA 59.552 41.667 0.00 0.00 0.00 4.26
189 190 4.447724 TGTCATAGTCGTTTTTGTCTGAGC 59.552 41.667 0.00 0.00 0.00 4.26
190 191 6.525121 TTGTCATAGTCGTTTTTGTCTGAG 57.475 37.500 0.00 0.00 0.00 3.35
191 192 6.481976 ACATTGTCATAGTCGTTTTTGTCTGA 59.518 34.615 0.00 0.00 0.00 3.27
192 193 6.658831 ACATTGTCATAGTCGTTTTTGTCTG 58.341 36.000 0.00 0.00 0.00 3.51
193 194 6.861065 ACATTGTCATAGTCGTTTTTGTCT 57.139 33.333 0.00 0.00 0.00 3.41
203 204 2.604914 CACTGCCGACATTGTCATAGTC 59.395 50.000 16.61 1.68 32.09 2.59
204 205 2.621338 CACTGCCGACATTGTCATAGT 58.379 47.619 16.61 12.97 32.09 2.12
205 206 1.328680 GCACTGCCGACATTGTCATAG 59.671 52.381 16.61 12.41 32.09 2.23
206 207 1.368641 GCACTGCCGACATTGTCATA 58.631 50.000 16.61 1.70 32.09 2.15
207 208 1.308069 GGCACTGCCGACATTGTCAT 61.308 55.000 16.61 0.00 39.62 3.06
208 209 1.965930 GGCACTGCCGACATTGTCA 60.966 57.895 16.61 0.00 39.62 3.58
209 210 2.870372 GGCACTGCCGACATTGTC 59.130 61.111 3.73 6.73 39.62 3.18
219 220 3.117175 GACGATGGCATGGCACTGC 62.117 63.158 25.84 15.47 41.53 4.40
220 221 1.450848 AGACGATGGCATGGCACTG 60.451 57.895 25.84 21.10 0.00 3.66
221 222 1.450848 CAGACGATGGCATGGCACT 60.451 57.895 25.84 14.18 0.00 4.40
222 223 3.104766 CAGACGATGGCATGGCAC 58.895 61.111 25.84 16.68 0.00 5.01
223 224 1.970352 TAGCAGACGATGGCATGGCA 61.970 55.000 25.52 25.52 0.00 4.92
224 225 1.227645 TAGCAGACGATGGCATGGC 60.228 57.895 13.29 13.29 0.00 4.40
225 226 0.105593 AGTAGCAGACGATGGCATGG 59.894 55.000 3.81 6.26 0.00 3.66
226 227 1.596260 CAAGTAGCAGACGATGGCATG 59.404 52.381 3.81 0.00 0.00 4.06
227 228 1.473965 CCAAGTAGCAGACGATGGCAT 60.474 52.381 0.00 0.00 34.46 4.40
228 229 0.108186 CCAAGTAGCAGACGATGGCA 60.108 55.000 0.00 0.00 34.46 4.92
229 230 2.682893 CCAAGTAGCAGACGATGGC 58.317 57.895 0.00 0.00 34.46 4.40
230 231 0.811616 GGCCAAGTAGCAGACGATGG 60.812 60.000 0.00 10.39 40.80 3.51
231 232 0.176680 AGGCCAAGTAGCAGACGATG 59.823 55.000 5.01 0.00 0.00 3.84
232 233 1.683917 CTAGGCCAAGTAGCAGACGAT 59.316 52.381 5.01 0.00 0.00 3.73
233 234 1.103803 CTAGGCCAAGTAGCAGACGA 58.896 55.000 5.01 0.00 0.00 4.20
234 235 0.818296 ACTAGGCCAAGTAGCAGACG 59.182 55.000 5.01 0.00 0.00 4.18
235 236 2.104170 AGACTAGGCCAAGTAGCAGAC 58.896 52.381 5.01 0.00 0.00 3.51
236 237 2.534042 AGACTAGGCCAAGTAGCAGA 57.466 50.000 5.01 0.00 0.00 4.26
237 238 3.556999 TCTAGACTAGGCCAAGTAGCAG 58.443 50.000 5.01 0.00 0.00 4.24
238 239 3.664551 TCTAGACTAGGCCAAGTAGCA 57.335 47.619 5.01 0.00 0.00 3.49
239 240 3.257127 CCATCTAGACTAGGCCAAGTAGC 59.743 52.174 5.01 0.00 0.00 3.58
240 241 4.730966 TCCATCTAGACTAGGCCAAGTAG 58.269 47.826 5.01 0.00 0.00 2.57
241 242 4.808767 TCCATCTAGACTAGGCCAAGTA 57.191 45.455 5.01 0.00 0.00 2.24
242 243 3.689872 TCCATCTAGACTAGGCCAAGT 57.310 47.619 5.01 0.00 0.00 3.16
243 244 5.070981 TCATTTCCATCTAGACTAGGCCAAG 59.929 44.000 5.01 0.00 0.00 3.61
244 245 4.968719 TCATTTCCATCTAGACTAGGCCAA 59.031 41.667 5.01 0.00 0.00 4.52
245 246 4.345257 GTCATTTCCATCTAGACTAGGCCA 59.655 45.833 5.01 0.00 0.00 5.36
246 247 4.559704 CGTCATTTCCATCTAGACTAGGCC 60.560 50.000 9.64 0.00 0.00 5.19
247 248 4.278669 TCGTCATTTCCATCTAGACTAGGC 59.721 45.833 9.64 0.00 0.00 3.93
248 249 5.561145 CGTCGTCATTTCCATCTAGACTAGG 60.561 48.000 9.64 0.00 0.00 3.02
249 250 5.236695 TCGTCGTCATTTCCATCTAGACTAG 59.763 44.000 2.81 2.81 0.00 2.57
250 251 5.007430 GTCGTCGTCATTTCCATCTAGACTA 59.993 44.000 0.00 0.00 0.00 2.59
251 252 3.945921 TCGTCGTCATTTCCATCTAGACT 59.054 43.478 0.00 0.00 0.00 3.24
252 253 4.036352 GTCGTCGTCATTTCCATCTAGAC 58.964 47.826 0.00 0.00 0.00 2.59
253 254 3.242641 CGTCGTCGTCATTTCCATCTAGA 60.243 47.826 0.00 0.00 0.00 2.43
254 255 3.036633 CGTCGTCGTCATTTCCATCTAG 58.963 50.000 0.00 0.00 0.00 2.43
255 256 2.223409 CCGTCGTCGTCATTTCCATCTA 60.223 50.000 0.71 0.00 35.01 1.98
256 257 1.469251 CCGTCGTCGTCATTTCCATCT 60.469 52.381 0.71 0.00 35.01 2.90
257 258 0.921347 CCGTCGTCGTCATTTCCATC 59.079 55.000 0.71 0.00 35.01 3.51
258 259 0.245539 ACCGTCGTCGTCATTTCCAT 59.754 50.000 0.71 0.00 35.01 3.41
259 260 0.880441 TACCGTCGTCGTCATTTCCA 59.120 50.000 0.71 0.00 35.01 3.53
260 261 1.262882 GTACCGTCGTCGTCATTTCC 58.737 55.000 0.71 0.00 35.01 3.13
261 262 1.262882 GGTACCGTCGTCGTCATTTC 58.737 55.000 0.00 0.00 35.01 2.17
262 263 0.597568 TGGTACCGTCGTCGTCATTT 59.402 50.000 7.57 0.00 35.01 2.32
263 264 0.109597 GTGGTACCGTCGTCGTCATT 60.110 55.000 7.57 0.00 35.01 2.57
264 265 0.957395 AGTGGTACCGTCGTCGTCAT 60.957 55.000 7.57 0.00 35.01 3.06
265 266 1.597854 AGTGGTACCGTCGTCGTCA 60.598 57.895 7.57 0.00 35.01 4.35
266 267 1.154338 CAGTGGTACCGTCGTCGTC 60.154 63.158 7.57 0.00 35.01 4.20
267 268 1.597854 TCAGTGGTACCGTCGTCGT 60.598 57.895 7.57 0.00 35.01 4.34
268 269 1.154338 GTCAGTGGTACCGTCGTCG 60.154 63.158 7.57 0.00 0.00 5.12
269 270 1.211190 GGTCAGTGGTACCGTCGTC 59.789 63.158 7.57 0.00 0.00 4.20
270 271 0.825010 AAGGTCAGTGGTACCGTCGT 60.825 55.000 7.57 0.00 42.15 4.34
271 272 0.388134 CAAGGTCAGTGGTACCGTCG 60.388 60.000 7.57 0.00 42.15 5.12
272 273 0.037605 CCAAGGTCAGTGGTACCGTC 60.038 60.000 7.57 2.97 42.15 4.79
273 274 0.470456 TCCAAGGTCAGTGGTACCGT 60.470 55.000 7.57 0.00 42.15 4.83
274 275 0.246635 CTCCAAGGTCAGTGGTACCG 59.753 60.000 7.57 0.00 42.15 4.02
275 276 0.613777 CCTCCAAGGTCAGTGGTACC 59.386 60.000 4.43 4.43 37.43 3.34
276 277 0.036294 GCCTCCAAGGTCAGTGGTAC 60.036 60.000 0.00 0.00 37.80 3.34
277 278 1.198759 GGCCTCCAAGGTCAGTGGTA 61.199 60.000 0.00 0.00 40.51 3.25
278 279 2.529744 GGCCTCCAAGGTCAGTGGT 61.530 63.158 0.00 0.00 40.51 4.16
279 280 2.352805 GGCCTCCAAGGTCAGTGG 59.647 66.667 0.00 0.00 40.51 4.00
280 281 3.160585 TGGCCTCCAAGGTCAGTG 58.839 61.111 3.32 0.00 46.76 3.66
284 285 2.440980 GGCATGGCCTCCAAGGTC 60.441 66.667 8.35 0.00 46.69 3.85
294 295 0.464452 AGTAACCTCGTAGGCATGGC 59.536 55.000 12.14 12.14 39.63 4.40
295 296 1.480954 ACAGTAACCTCGTAGGCATGG 59.519 52.381 0.00 0.00 39.63 3.66
296 297 2.481449 GGACAGTAACCTCGTAGGCATG 60.481 54.545 1.36 0.00 39.63 4.06
297 298 1.755380 GGACAGTAACCTCGTAGGCAT 59.245 52.381 1.36 0.00 39.63 4.40
298 299 1.180029 GGACAGTAACCTCGTAGGCA 58.820 55.000 1.36 0.00 39.63 4.75
299 300 0.100146 CGGACAGTAACCTCGTAGGC 59.900 60.000 1.36 0.00 39.63 3.93
300 301 1.457346 ACGGACAGTAACCTCGTAGG 58.543 55.000 0.00 0.03 42.49 3.18
301 302 2.415090 CCAACGGACAGTAACCTCGTAG 60.415 54.545 0.00 0.00 33.52 3.51
302 303 1.541147 CCAACGGACAGTAACCTCGTA 59.459 52.381 0.00 0.00 33.52 3.43
303 304 0.316204 CCAACGGACAGTAACCTCGT 59.684 55.000 0.00 0.00 35.48 4.18
304 305 0.316204 ACCAACGGACAGTAACCTCG 59.684 55.000 0.00 0.00 0.00 4.63
305 306 1.617357 AGACCAACGGACAGTAACCTC 59.383 52.381 0.00 0.00 0.00 3.85
306 307 1.617357 GAGACCAACGGACAGTAACCT 59.383 52.381 0.00 0.00 0.00 3.50
307 308 1.668047 CGAGACCAACGGACAGTAACC 60.668 57.143 0.00 0.00 0.00 2.85
308 309 1.000938 ACGAGACCAACGGACAGTAAC 60.001 52.381 0.00 0.00 34.93 2.50
309 310 1.321474 ACGAGACCAACGGACAGTAA 58.679 50.000 0.00 0.00 34.93 2.24
310 311 1.267806 GAACGAGACCAACGGACAGTA 59.732 52.381 0.00 0.00 34.93 2.74
311 312 0.031721 GAACGAGACCAACGGACAGT 59.968 55.000 0.00 0.00 34.93 3.55
312 313 0.031585 TGAACGAGACCAACGGACAG 59.968 55.000 0.00 0.00 34.93 3.51
313 314 0.249155 GTGAACGAGACCAACGGACA 60.249 55.000 0.00 0.00 34.93 4.02
314 315 1.273455 CGTGAACGAGACCAACGGAC 61.273 60.000 0.00 0.00 43.02 4.79
315 316 1.008194 CGTGAACGAGACCAACGGA 60.008 57.895 0.00 0.00 43.02 4.69
316 317 2.654912 GCGTGAACGAGACCAACGG 61.655 63.158 7.10 0.00 43.02 4.44
317 318 2.654912 GGCGTGAACGAGACCAACG 61.655 63.158 7.10 0.00 43.02 4.10
318 319 2.654912 CGGCGTGAACGAGACCAAC 61.655 63.158 7.10 0.00 43.02 3.77
319 320 2.355363 CGGCGTGAACGAGACCAA 60.355 61.111 7.10 0.00 43.02 3.67
320 321 3.547249 GACGGCGTGAACGAGACCA 62.547 63.158 21.19 0.00 43.02 4.02
321 322 2.804090 GACGGCGTGAACGAGACC 60.804 66.667 21.19 0.00 43.02 3.85
322 323 3.164011 CGACGGCGTGAACGAGAC 61.164 66.667 21.19 0.00 43.02 3.36
335 336 0.521867 TAGCGATCAAACCGACGACG 60.522 55.000 0.00 0.00 39.43 5.12
336 337 1.621107 TTAGCGATCAAACCGACGAC 58.379 50.000 0.00 0.00 0.00 4.34
337 338 1.987770 GTTTAGCGATCAAACCGACGA 59.012 47.619 0.00 0.00 31.13 4.20
338 339 1.990563 AGTTTAGCGATCAAACCGACG 59.009 47.619 4.08 0.00 36.71 5.12
339 340 4.032558 CCTTAGTTTAGCGATCAAACCGAC 59.967 45.833 4.08 0.00 36.71 4.79
340 341 4.178540 CCTTAGTTTAGCGATCAAACCGA 58.821 43.478 4.08 0.00 36.71 4.69
341 342 3.242316 GCCTTAGTTTAGCGATCAAACCG 60.242 47.826 4.08 0.00 36.71 4.44
342 343 3.687698 TGCCTTAGTTTAGCGATCAAACC 59.312 43.478 4.08 0.00 36.71 3.27
343 344 4.939509 TGCCTTAGTTTAGCGATCAAAC 57.060 40.909 0.00 0.00 36.37 2.93
344 345 5.414454 ACATTGCCTTAGTTTAGCGATCAAA 59.586 36.000 0.00 0.00 0.00 2.69
345 346 4.941263 ACATTGCCTTAGTTTAGCGATCAA 59.059 37.500 0.00 0.00 0.00 2.57
346 347 4.513442 ACATTGCCTTAGTTTAGCGATCA 58.487 39.130 0.00 0.00 0.00 2.92
347 348 6.258068 ACTTACATTGCCTTAGTTTAGCGATC 59.742 38.462 0.00 0.00 0.00 3.69
348 349 6.113411 ACTTACATTGCCTTAGTTTAGCGAT 58.887 36.000 0.00 0.00 0.00 4.58
349 350 5.484715 ACTTACATTGCCTTAGTTTAGCGA 58.515 37.500 0.00 0.00 0.00 4.93
350 351 5.796350 ACTTACATTGCCTTAGTTTAGCG 57.204 39.130 0.00 0.00 0.00 4.26
351 352 9.902196 TTTTTACTTACATTGCCTTAGTTTAGC 57.098 29.630 0.00 0.00 0.00 3.09
378 379 8.044908 TCGGTCACTATACATGCTCTATATGTA 58.955 37.037 0.00 0.00 43.05 2.29
379 380 6.884836 TCGGTCACTATACATGCTCTATATGT 59.115 38.462 0.00 0.00 41.36 2.29
380 381 7.321745 TCGGTCACTATACATGCTCTATATG 57.678 40.000 0.00 0.00 0.00 1.78
381 382 7.939784 TTCGGTCACTATACATGCTCTATAT 57.060 36.000 0.00 0.00 0.00 0.86
382 383 7.939784 ATTCGGTCACTATACATGCTCTATA 57.060 36.000 0.00 0.00 0.00 1.31
383 384 6.842437 ATTCGGTCACTATACATGCTCTAT 57.158 37.500 0.00 0.00 0.00 1.98
384 385 6.650427 AATTCGGTCACTATACATGCTCTA 57.350 37.500 0.00 0.00 0.00 2.43
417 418 5.105567 TGACTTTGGTCACTGGACTTAAA 57.894 39.130 0.00 0.00 46.19 1.52
442 443 3.678056 ATACTTGAACTTGAGTCGGCA 57.322 42.857 0.00 0.00 0.00 5.69
477 478 1.741706 CTGTGGTTGCAATAGGAGCAG 59.258 52.381 0.59 2.49 43.75 4.24
487 488 2.124529 TGCGTTCCTGTGGTTGCA 60.125 55.556 0.00 0.00 0.00 4.08
497 499 1.734465 CCAGAATTCAGACTGCGTTCC 59.266 52.381 8.44 0.00 33.40 3.62
502 504 2.010145 TACGCCAGAATTCAGACTGC 57.990 50.000 8.44 1.80 33.40 4.40
525 527 3.947834 CGCTACATTTCTCCCTTTTCCAT 59.052 43.478 0.00 0.00 0.00 3.41
534 536 4.686554 GGATATGTGACGCTACATTTCTCC 59.313 45.833 16.60 13.30 41.31 3.71
543 545 1.704641 AGCTGGGATATGTGACGCTA 58.295 50.000 0.00 0.00 0.00 4.26
544 546 0.833287 AAGCTGGGATATGTGACGCT 59.167 50.000 0.00 0.00 0.00 5.07
571 573 0.254178 ATGAGTGGTGTGATGGAGCC 59.746 55.000 0.00 0.00 0.00 4.70
591 593 4.516365 TTAGGTGTTCTTCGGTTCTCTC 57.484 45.455 0.00 0.00 0.00 3.20
625 628 1.817209 CCTGCGTAGACCCCTCTTC 59.183 63.158 0.53 0.00 0.00 2.87
648 651 2.203337 GTGCTGGAACTGTGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
649 652 3.357079 CGTGCTGGAACTGTGGCC 61.357 66.667 0.00 0.00 0.00 5.36
650 653 4.030452 GCGTGCTGGAACTGTGGC 62.030 66.667 0.00 0.00 0.00 5.01
684 687 4.353437 GGCTGGTTGCAGTGCAGC 62.353 66.667 22.41 22.41 45.15 5.25
685 688 1.812686 ATTGGCTGGTTGCAGTGCAG 61.813 55.000 18.81 7.84 45.15 4.41
690 693 2.529780 TTTTGATTGGCTGGTTGCAG 57.470 45.000 0.00 0.00 45.15 4.41
693 696 3.191162 TCTCGATTTTGATTGGCTGGTTG 59.809 43.478 0.00 0.00 0.00 3.77
695 698 3.071874 TCTCGATTTTGATTGGCTGGT 57.928 42.857 0.00 0.00 0.00 4.00
696 699 4.168760 GTTTCTCGATTTTGATTGGCTGG 58.831 43.478 0.00 0.00 0.00 4.85
697 700 4.168760 GGTTTCTCGATTTTGATTGGCTG 58.831 43.478 0.00 0.00 0.00 4.85
698 701 3.826157 TGGTTTCTCGATTTTGATTGGCT 59.174 39.130 0.00 0.00 0.00 4.75
699 702 4.168760 CTGGTTTCTCGATTTTGATTGGC 58.831 43.478 0.00 0.00 0.00 4.52
707 710 1.787847 CGCGCTGGTTTCTCGATTT 59.212 52.632 5.56 0.00 0.00 2.17
805 809 1.081277 GGGAGGGGAGTGGAGTTCT 59.919 63.158 0.00 0.00 0.00 3.01
811 815 3.787001 GCTTCGGGAGGGGAGTGG 61.787 72.222 0.00 0.00 0.00 4.00
812 816 3.003173 TGCTTCGGGAGGGGAGTG 61.003 66.667 0.00 0.00 0.00 3.51
813 817 3.003763 GTGCTTCGGGAGGGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
815 819 2.285368 ATGTGCTTCGGGAGGGGA 60.285 61.111 0.00 0.00 0.00 4.81
908 915 4.416601 AGGAAGACGGGGAGGGGG 62.417 72.222 0.00 0.00 0.00 5.40
1679 1698 3.617263 CAGACAAATACGAGGCAACCTAC 59.383 47.826 0.00 0.00 31.76 3.18
1693 1717 5.026121 TCTACACCTCCAGATCAGACAAAT 58.974 41.667 0.00 0.00 0.00 2.32
1694 1718 4.416516 TCTACACCTCCAGATCAGACAAA 58.583 43.478 0.00 0.00 0.00 2.83
1729 1757 5.926663 ACAAGATCAGACACATGCTATGAT 58.073 37.500 0.00 0.00 33.44 2.45
1732 1760 6.155136 CGATACAAGATCAGACACATGCTAT 58.845 40.000 0.00 0.00 0.00 2.97
1767 1809 1.153881 GCTACCACGAACGAGGGAC 60.154 63.158 14.16 1.06 0.00 4.46
1781 1825 1.734163 ACATAACACGGCCAAGCTAC 58.266 50.000 2.24 0.00 0.00 3.58
1786 1830 3.244284 ACACTAGAACATAACACGGCCAA 60.244 43.478 2.24 0.00 0.00 4.52
1848 1894 7.622893 AAATTAAGATCTGAGAGCCAACTTC 57.377 36.000 0.00 0.00 0.00 3.01
1897 2030 9.428097 GCACAAAATTCCAAGAAATTTCTATCT 57.572 29.630 20.76 3.04 37.75 1.98
1901 2034 7.042523 CGAAGCACAAAATTCCAAGAAATTTCT 60.043 33.333 15.11 15.11 37.75 2.52
1903 2036 6.947258 CGAAGCACAAAATTCCAAGAAATTT 58.053 32.000 0.00 0.00 39.83 1.82
1927 2060 2.577911 GAGCGCAAAAGGCATCGC 60.578 61.111 11.47 0.00 45.17 4.58
1928 2061 2.276868 CGAGCGCAAAAGGCATCG 60.277 61.111 11.47 3.12 45.17 3.84
1929 2062 1.512734 CACGAGCGCAAAAGGCATC 60.513 57.895 11.47 0.00 45.17 3.91
1930 2063 2.562912 CACGAGCGCAAAAGGCAT 59.437 55.556 11.47 0.00 45.17 4.40
1931 2064 4.326766 GCACGAGCGCAAAAGGCA 62.327 61.111 11.47 0.00 45.17 4.75
1947 2080 1.985684 GCGATAAGGTTTGCAAACAGC 59.014 47.619 35.95 26.15 45.96 4.40
1948 2081 2.241722 CGCGATAAGGTTTGCAAACAG 58.758 47.619 35.95 22.04 40.63 3.16
1949 2082 1.604755 ACGCGATAAGGTTTGCAAACA 59.395 42.857 35.95 21.08 40.63 2.83
1950 2083 2.325509 ACGCGATAAGGTTTGCAAAC 57.674 45.000 30.09 30.09 38.17 2.93
1951 2084 2.290916 TCAACGCGATAAGGTTTGCAAA 59.709 40.909 15.93 8.05 0.00 3.68
1952 2085 1.874231 TCAACGCGATAAGGTTTGCAA 59.126 42.857 15.93 0.00 0.00 4.08
1953 2086 1.514003 TCAACGCGATAAGGTTTGCA 58.486 45.000 15.93 0.00 0.00 4.08
1954 2087 2.604969 TTCAACGCGATAAGGTTTGC 57.395 45.000 15.93 0.00 0.00 3.68
1955 2088 4.398549 TCTTTCAACGCGATAAGGTTTG 57.601 40.909 15.93 4.85 0.00 2.93
1956 2089 5.427036 TTTCTTTCAACGCGATAAGGTTT 57.573 34.783 15.93 0.00 0.00 3.27
1957 2090 5.622770 ATTTCTTTCAACGCGATAAGGTT 57.377 34.783 15.93 0.00 0.00 3.50
1958 2091 5.622770 AATTTCTTTCAACGCGATAAGGT 57.377 34.783 15.93 0.00 0.00 3.50
1959 2092 6.314784 AGAAATTTCTTTCAACGCGATAAGG 58.685 36.000 15.93 4.30 42.71 2.69
1960 2093 7.648439 CAAGAAATTTCTTTCAACGCGATAAG 58.352 34.615 27.08 10.31 44.70 1.73
1961 2094 6.087555 GCAAGAAATTTCTTTCAACGCGATAA 59.912 34.615 27.08 0.00 44.70 1.75
1962 2095 5.567534 GCAAGAAATTTCTTTCAACGCGATA 59.432 36.000 27.08 0.00 44.70 2.92
1963 2096 4.382754 GCAAGAAATTTCTTTCAACGCGAT 59.617 37.500 27.08 0.00 44.70 4.58
1964 2097 3.728718 GCAAGAAATTTCTTTCAACGCGA 59.271 39.130 27.08 0.00 44.70 5.87
1965 2098 3.485378 TGCAAGAAATTTCTTTCAACGCG 59.515 39.130 27.08 16.46 44.70 6.01
1966 2099 5.388225 TTGCAAGAAATTTCTTTCAACGC 57.612 34.783 29.95 26.56 44.70 4.84
1969 2102 6.638610 TCAGGTTGCAAGAAATTTCTTTCAA 58.361 32.000 29.95 29.95 44.70 2.69
1970 2103 6.219417 TCAGGTTGCAAGAAATTTCTTTCA 57.781 33.333 27.08 25.31 44.70 2.69
1971 2104 8.816640 TTATCAGGTTGCAAGAAATTTCTTTC 57.183 30.769 27.08 23.24 44.70 2.62
1972 2105 8.424133 ACTTATCAGGTTGCAAGAAATTTCTTT 58.576 29.630 27.08 14.05 44.70 2.52
1974 2107 7.373493 CACTTATCAGGTTGCAAGAAATTTCT 58.627 34.615 15.11 15.11 39.74 2.52
1975 2108 6.587608 CCACTTATCAGGTTGCAAGAAATTTC 59.412 38.462 10.33 10.33 0.00 2.17
1976 2109 6.458210 CCACTTATCAGGTTGCAAGAAATTT 58.542 36.000 0.00 0.00 0.00 1.82
1977 2110 5.567423 GCCACTTATCAGGTTGCAAGAAATT 60.567 40.000 0.00 0.00 0.00 1.82
1978 2111 4.082026 GCCACTTATCAGGTTGCAAGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
1979 2112 3.255642 GCCACTTATCAGGTTGCAAGAAA 59.744 43.478 0.00 0.00 0.00 2.52
1980 2113 2.819608 GCCACTTATCAGGTTGCAAGAA 59.180 45.455 0.00 0.00 0.00 2.52
1981 2114 2.436417 GCCACTTATCAGGTTGCAAGA 58.564 47.619 0.00 0.00 0.00 3.02
1982 2115 1.131126 CGCCACTTATCAGGTTGCAAG 59.869 52.381 0.00 0.00 0.00 4.01
1983 2116 1.164411 CGCCACTTATCAGGTTGCAA 58.836 50.000 0.00 0.00 0.00 4.08
1984 2117 0.323302 TCGCCACTTATCAGGTTGCA 59.677 50.000 0.00 0.00 0.00 4.08
1985 2118 1.668419 ATCGCCACTTATCAGGTTGC 58.332 50.000 0.00 0.00 0.00 4.17
1986 2119 3.440173 ACAAATCGCCACTTATCAGGTTG 59.560 43.478 0.00 0.00 0.00 3.77
1987 2120 3.686016 ACAAATCGCCACTTATCAGGTT 58.314 40.909 0.00 0.00 0.00 3.50
1988 2121 3.350219 ACAAATCGCCACTTATCAGGT 57.650 42.857 0.00 0.00 0.00 4.00
1989 2122 3.065371 GGAACAAATCGCCACTTATCAGG 59.935 47.826 0.00 0.00 0.00 3.86
1990 2123 3.941483 AGGAACAAATCGCCACTTATCAG 59.059 43.478 0.00 0.00 0.00 2.90
1991 2124 3.938963 GAGGAACAAATCGCCACTTATCA 59.061 43.478 0.00 0.00 0.00 2.15
1992 2125 3.312697 GGAGGAACAAATCGCCACTTATC 59.687 47.826 0.00 0.00 0.00 1.75
1993 2126 3.279434 GGAGGAACAAATCGCCACTTAT 58.721 45.455 0.00 0.00 0.00 1.73
1994 2127 2.039216 TGGAGGAACAAATCGCCACTTA 59.961 45.455 0.00 0.00 30.78 2.24
2003 2136 6.070824 ACAAACTGAAAACTGGAGGAACAAAT 60.071 34.615 0.00 0.00 0.00 2.32
2032 2165 6.830324 AGCATCACAGTGGAATAACATGTAAT 59.170 34.615 0.00 0.00 0.00 1.89
2034 2167 5.744171 AGCATCACAGTGGAATAACATGTA 58.256 37.500 0.00 0.00 0.00 2.29
2035 2168 4.592942 AGCATCACAGTGGAATAACATGT 58.407 39.130 0.00 0.00 0.00 3.21
2046 2179 3.865446 TCATTCCACTAGCATCACAGTG 58.135 45.455 0.00 0.00 41.51 3.66
2047 2180 4.558226 TTCATTCCACTAGCATCACAGT 57.442 40.909 0.00 0.00 0.00 3.55
2048 2181 5.366460 AGATTCATTCCACTAGCATCACAG 58.634 41.667 0.00 0.00 0.00 3.66
2049 2182 5.363562 AGATTCATTCCACTAGCATCACA 57.636 39.130 0.00 0.00 0.00 3.58
2050 2183 5.587844 ACAAGATTCATTCCACTAGCATCAC 59.412 40.000 0.00 0.00 0.00 3.06
2052 2185 7.976135 ATACAAGATTCATTCCACTAGCATC 57.024 36.000 0.00 0.00 0.00 3.91
2053 2186 8.216423 AGAATACAAGATTCATTCCACTAGCAT 58.784 33.333 0.00 0.00 30.51 3.79
2054 2187 7.568349 AGAATACAAGATTCATTCCACTAGCA 58.432 34.615 0.00 0.00 30.51 3.49
2055 2188 8.443953 AAGAATACAAGATTCATTCCACTAGC 57.556 34.615 0.00 0.00 30.51 3.42
2057 2190 9.958180 TCAAAGAATACAAGATTCATTCCACTA 57.042 29.630 0.53 0.00 30.51 2.74
2058 2191 8.868522 TCAAAGAATACAAGATTCATTCCACT 57.131 30.769 0.53 0.00 30.51 4.00
2059 2192 9.565213 CTTCAAAGAATACAAGATTCATTCCAC 57.435 33.333 0.53 0.00 30.51 4.02
2077 2210 2.368548 TCAGTGCACTAGGCTTCAAAGA 59.631 45.455 21.20 5.52 45.15 2.52
2085 2218 3.753272 TCAAAAAGATCAGTGCACTAGGC 59.247 43.478 21.20 11.31 45.13 3.93
2086 2219 6.506500 AATCAAAAAGATCAGTGCACTAGG 57.493 37.500 21.20 8.62 35.39 3.02
2096 2229 7.345422 TGTGAAGGTCAAATCAAAAAGATCA 57.655 32.000 0.00 0.00 35.39 2.92
2102 2235 7.111247 ACAAGATGTGAAGGTCAAATCAAAA 57.889 32.000 10.33 0.00 42.30 2.44
2103 2236 6.713762 ACAAGATGTGAAGGTCAAATCAAA 57.286 33.333 10.33 0.00 42.30 2.69
2104 2237 6.713762 AACAAGATGTGAAGGTCAAATCAA 57.286 33.333 10.33 0.00 42.30 2.57
2113 2246 7.651808 AGTGTTTCAATAACAAGATGTGAAGG 58.348 34.615 0.00 0.00 30.43 3.46
2117 2250 8.854979 TTCAAGTGTTTCAATAACAAGATGTG 57.145 30.769 0.00 0.00 31.20 3.21
2118 2251 8.686334 ACTTCAAGTGTTTCAATAACAAGATGT 58.314 29.630 0.00 0.00 31.20 3.06
2119 2252 9.520204 AACTTCAAGTGTTTCAATAACAAGATG 57.480 29.630 0.00 0.00 31.20 2.90
2132 2265 8.711457 CAACAATTTCAGAAACTTCAAGTGTTT 58.289 29.630 0.00 0.00 39.92 2.83
2133 2266 8.087750 TCAACAATTTCAGAAACTTCAAGTGTT 58.912 29.630 0.00 0.00 0.00 3.32
2134 2267 7.601856 TCAACAATTTCAGAAACTTCAAGTGT 58.398 30.769 0.00 0.00 0.00 3.55
2135 2268 7.970061 TCTCAACAATTTCAGAAACTTCAAGTG 59.030 33.333 0.00 0.00 0.00 3.16
2136 2269 8.055279 TCTCAACAATTTCAGAAACTTCAAGT 57.945 30.769 0.00 0.00 0.00 3.16
2137 2270 9.525409 AATCTCAACAATTTCAGAAACTTCAAG 57.475 29.630 0.00 0.00 0.00 3.02
2138 2271 9.874205 AAATCTCAACAATTTCAGAAACTTCAA 57.126 25.926 0.00 0.00 0.00 2.69
2139 2272 9.304731 CAAATCTCAACAATTTCAGAAACTTCA 57.695 29.630 0.00 0.00 0.00 3.02
2140 2273 8.758715 CCAAATCTCAACAATTTCAGAAACTTC 58.241 33.333 0.00 0.00 0.00 3.01
2141 2274 8.477256 TCCAAATCTCAACAATTTCAGAAACTT 58.523 29.630 0.00 0.00 0.00 2.66
2142 2275 8.010733 TCCAAATCTCAACAATTTCAGAAACT 57.989 30.769 0.00 0.00 0.00 2.66
2143 2276 8.137437 TCTCCAAATCTCAACAATTTCAGAAAC 58.863 33.333 0.00 0.00 0.00 2.78
2144 2277 8.236585 TCTCCAAATCTCAACAATTTCAGAAA 57.763 30.769 0.00 0.00 0.00 2.52
2145 2278 7.822161 TCTCCAAATCTCAACAATTTCAGAA 57.178 32.000 0.00 0.00 0.00 3.02
2146 2279 9.690913 ATATCTCCAAATCTCAACAATTTCAGA 57.309 29.630 0.00 0.00 0.00 3.27
2150 2283 9.880157 CCAAATATCTCCAAATCTCAACAATTT 57.120 29.630 0.00 0.00 0.00 1.82
2151 2284 9.258629 TCCAAATATCTCCAAATCTCAACAATT 57.741 29.630 0.00 0.00 0.00 2.32
2152 2285 8.827832 TCCAAATATCTCCAAATCTCAACAAT 57.172 30.769 0.00 0.00 0.00 2.71
2490 2630 8.561738 AACATATTGAAATAGACCGTCACTTT 57.438 30.769 0.40 0.00 0.00 2.66
2505 2645 6.976088 ACATGACCGAACAAAACATATTGAA 58.024 32.000 0.00 0.00 34.38 2.69
2557 2697 5.105269 TGTTGTACTGTGATAATAAGGCGGA 60.105 40.000 0.00 0.00 0.00 5.54
2583 2723 4.953579 GGCCTATTCCAATCAAAACCACTA 59.046 41.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.