Multiple sequence alignment - TraesCS4B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G274600 chr4B 100.000 2438 0 0 1 2438 552663414 552660977 0.000000e+00 4503
1 TraesCS4B01G274600 chr1B 94.223 1783 97 5 3 1781 442195839 442197619 0.000000e+00 2717
2 TraesCS4B01G274600 chr6B 89.899 1782 174 5 3 1780 688061153 688062932 0.000000e+00 2289
3 TraesCS4B01G274600 chr7D 86.356 1781 233 9 3 1779 581688299 581690073 0.000000e+00 1934
4 TraesCS4B01G274600 chr3A 86.147 1783 234 11 3 1780 724217635 724215861 0.000000e+00 1912
5 TraesCS4B01G274600 chr3A 84.314 1785 251 20 3 1780 136498088 136499850 0.000000e+00 1718
6 TraesCS4B01G274600 chr2A 85.786 1787 240 12 1 1781 487787604 487789382 0.000000e+00 1881
7 TraesCS4B01G274600 chr6A 84.258 1785 265 12 1 1780 138435983 138434210 0.000000e+00 1725
8 TraesCS4B01G274600 chr7A 84.841 1669 239 10 1 1667 66270881 66269225 0.000000e+00 1668
9 TraesCS4B01G274600 chr7A 83.800 1784 244 21 4 1779 586347328 586345582 0.000000e+00 1652
10 TraesCS4B01G274600 chr4D 88.484 686 43 16 1779 2436 443178671 443177994 0.000000e+00 797
11 TraesCS4B01G274600 chr3B 93.047 489 25 6 1295 1779 597265055 597264572 0.000000e+00 706
12 TraesCS4B01G274600 chr3B 91.457 199 14 2 1583 1779 171087739 171087936 1.110000e-68 270
13 TraesCS4B01G274600 chr3B 89.691 194 18 2 1587 1778 195558983 195558790 1.870000e-61 246
14 TraesCS4B01G274600 chr4A 89.032 465 33 11 1987 2438 24565501 24565960 5.890000e-156 560


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G274600 chr4B 552660977 552663414 2437 True 4503 4503 100.000 1 2438 1 chr4B.!!$R1 2437
1 TraesCS4B01G274600 chr1B 442195839 442197619 1780 False 2717 2717 94.223 3 1781 1 chr1B.!!$F1 1778
2 TraesCS4B01G274600 chr6B 688061153 688062932 1779 False 2289 2289 89.899 3 1780 1 chr6B.!!$F1 1777
3 TraesCS4B01G274600 chr7D 581688299 581690073 1774 False 1934 1934 86.356 3 1779 1 chr7D.!!$F1 1776
4 TraesCS4B01G274600 chr3A 724215861 724217635 1774 True 1912 1912 86.147 3 1780 1 chr3A.!!$R1 1777
5 TraesCS4B01G274600 chr3A 136498088 136499850 1762 False 1718 1718 84.314 3 1780 1 chr3A.!!$F1 1777
6 TraesCS4B01G274600 chr2A 487787604 487789382 1778 False 1881 1881 85.786 1 1781 1 chr2A.!!$F1 1780
7 TraesCS4B01G274600 chr6A 138434210 138435983 1773 True 1725 1725 84.258 1 1780 1 chr6A.!!$R1 1779
8 TraesCS4B01G274600 chr7A 66269225 66270881 1656 True 1668 1668 84.841 1 1667 1 chr7A.!!$R1 1666
9 TraesCS4B01G274600 chr7A 586345582 586347328 1746 True 1652 1652 83.800 4 1779 1 chr7A.!!$R2 1775
10 TraesCS4B01G274600 chr4D 443177994 443178671 677 True 797 797 88.484 1779 2436 1 chr4D.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 374 0.105039 GGCATCAAGGACCTACGGAG 59.895 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1913 0.106708 TGTTGTGCCTGTCTCTGGAC 59.893 55.0 0.0 0.0 42.42 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.509512 TGCGAGATAGGCAGCTTCT 58.490 52.632 0.00 0.00 35.04 2.85
33 34 1.692411 TGCGAGATAGGCAGCTTCTA 58.308 50.000 0.00 0.00 35.04 2.10
133 135 1.415659 AGGAGATTCGAAGCCTGGATG 59.584 52.381 10.29 0.00 0.00 3.51
175 177 4.654915 GGGGGAGACATACTCTACTAGAC 58.345 52.174 0.00 0.00 44.37 2.59
179 181 6.461640 GGGAGACATACTCTACTAGACTCTC 58.538 48.000 0.00 0.00 44.37 3.20
181 183 7.202066 GGGAGACATACTCTACTAGACTCTCTT 60.202 44.444 0.00 0.00 44.37 2.85
195 197 9.046296 ACTAGACTCTCTTGTTACACAAATTTG 57.954 33.333 16.67 16.67 37.69 2.32
218 220 7.938140 TGTCTATATCATATGTCGATGTGGA 57.062 36.000 1.90 0.00 0.00 4.02
352 354 3.223674 TCCAAGGAAAAAGGTGGTCTC 57.776 47.619 0.00 0.00 32.68 3.36
355 357 0.250770 AGGAAAAAGGTGGTCTCGGC 60.251 55.000 0.00 0.00 0.00 5.54
372 374 0.105039 GGCATCAAGGACCTACGGAG 59.895 60.000 0.00 0.00 0.00 4.63
382 384 5.532664 AGGACCTACGGAGACAAAATATC 57.467 43.478 0.00 0.00 0.00 1.63
520 522 0.673644 ACTCGCCCTGTTGGAAATCG 60.674 55.000 0.00 0.00 35.39 3.34
523 525 1.586154 CGCCCTGTTGGAAATCGCTT 61.586 55.000 0.00 0.00 35.39 4.68
568 571 5.208463 TGTTGGGCAGAAAAATAGAAACC 57.792 39.130 0.00 0.00 0.00 3.27
614 617 5.016173 TGTGGAAAGACTCAATTAATGGGG 58.984 41.667 0.00 0.00 31.87 4.96
621 624 2.582636 ACTCAATTAATGGGGCTCCTGT 59.417 45.455 3.07 0.00 31.87 4.00
676 679 8.747538 ATATTTGTAATTTCCCTGACTGTACC 57.252 34.615 0.00 0.00 0.00 3.34
758 761 1.796796 CTTAAGCAGTGGGAAGCGC 59.203 57.895 0.00 0.00 35.48 5.92
795 798 5.612725 AAAAACATTCCTCTTGCCAAGAA 57.387 34.783 8.74 0.00 37.02 2.52
823 828 1.420138 GGTGACAAAGTCTTCTGGGGA 59.580 52.381 0.00 0.00 33.15 4.81
837 842 4.627284 TCTGGGGACTTAATCAAAACGA 57.373 40.909 0.00 0.00 0.00 3.85
1309 1316 2.093106 TCTCCCTCTGCTCGTTTCTAC 58.907 52.381 0.00 0.00 0.00 2.59
1323 1330 6.238953 GCTCGTTTCTACTATATTGGACAGGA 60.239 42.308 0.00 0.00 0.00 3.86
1381 1388 2.093288 GGTGCAGAGATGATCAGGAACA 60.093 50.000 0.09 0.00 0.00 3.18
1411 1418 0.945743 GCTGATGCGACTGTGTGACA 60.946 55.000 0.00 0.00 0.00 3.58
1525 1533 2.159393 GCGCCATCTGATACTTTTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
1565 1573 2.076100 GATCTGATGTGTGGTTTGCGA 58.924 47.619 0.00 0.00 0.00 5.10
1587 1595 5.401376 CGACTGTTCTGATCGTTCTTTTGTA 59.599 40.000 0.00 0.00 0.00 2.41
1593 1601 5.972935 TCTGATCGTTCTTTTGTATGGCTA 58.027 37.500 0.00 0.00 0.00 3.93
1634 1642 3.166679 GTTACCAGGTTTTTGCCCCATA 58.833 45.455 0.00 0.00 0.00 2.74
1651 1659 2.221749 CCATAGCATCCGTTTCGATGTG 59.778 50.000 0.00 0.00 41.49 3.21
1672 1680 1.209127 GCGGATGTGGTGGTTTTCG 59.791 57.895 0.00 0.00 0.00 3.46
1738 1747 6.998074 TGTCATCTTGAACTGGTTGTATTTCT 59.002 34.615 0.00 0.00 0.00 2.52
1877 1887 0.804989 CGGTGAAAATGAGCCCAGTC 59.195 55.000 0.00 0.00 0.00 3.51
1883 1893 0.111061 AAATGAGCCCAGTCTGTGCA 59.889 50.000 10.08 0.00 0.00 4.57
1919 1931 2.217038 GGGTCCAGAGACAGGCACA 61.217 63.158 0.00 0.00 45.48 4.57
1920 1932 1.754745 GGTCCAGAGACAGGCACAA 59.245 57.895 0.00 0.00 45.48 3.33
1922 1934 0.106708 GTCCAGAGACAGGCACAACA 59.893 55.000 0.00 0.00 42.99 3.33
1964 1981 1.317613 TTCTGACCGCAAACTGCAAT 58.682 45.000 0.00 0.00 45.36 3.56
1965 1982 2.177394 TCTGACCGCAAACTGCAATA 57.823 45.000 0.00 0.00 45.36 1.90
1966 1983 2.710377 TCTGACCGCAAACTGCAATAT 58.290 42.857 0.00 0.00 45.36 1.28
1967 1984 2.419673 TCTGACCGCAAACTGCAATATG 59.580 45.455 0.00 0.00 45.36 1.78
1968 1985 1.135431 TGACCGCAAACTGCAATATGC 60.135 47.619 7.09 7.09 45.36 3.14
1984 2011 6.596703 GCAATATGCATGTGCGATATATAGG 58.403 40.000 18.03 0.00 44.26 2.57
1992 2019 4.566004 TGTGCGATATATAGGCTCCAAAC 58.434 43.478 0.00 1.21 0.00 2.93
1995 2022 3.187700 CGATATATAGGCTCCAAACGGC 58.812 50.000 0.00 0.00 0.00 5.68
2021 2048 4.328983 AGAACGTATTTATTGGACACGCTG 59.671 41.667 0.00 0.00 36.11 5.18
2026 2053 2.093306 TTATTGGACACGCTGACAGG 57.907 50.000 4.26 0.00 0.00 4.00
2030 2057 0.826256 TGGACACGCTGACAGGTAGT 60.826 55.000 4.26 2.61 0.00 2.73
2052 2079 1.066908 CTTCGTTTTCTTTGCCTGCCA 59.933 47.619 0.00 0.00 0.00 4.92
2053 2080 0.383949 TCGTTTTCTTTGCCTGCCAC 59.616 50.000 0.00 0.00 0.00 5.01
2054 2081 0.934436 CGTTTTCTTTGCCTGCCACG 60.934 55.000 0.00 0.00 0.00 4.94
2055 2082 1.067250 TTTTCTTTGCCTGCCACGC 59.933 52.632 0.00 0.00 0.00 5.34
2056 2083 2.362329 TTTTCTTTGCCTGCCACGCC 62.362 55.000 0.00 0.00 0.00 5.68
2057 2084 4.577677 TCTTTGCCTGCCACGCCA 62.578 61.111 0.00 0.00 0.00 5.69
2058 2085 4.347453 CTTTGCCTGCCACGCCAC 62.347 66.667 0.00 0.00 0.00 5.01
2094 2121 2.291089 TGCTCCTCAATCTTTCATGCCA 60.291 45.455 0.00 0.00 0.00 4.92
2116 2144 0.898326 TAGAGCTTGCCAGGTGTCGA 60.898 55.000 0.00 0.00 0.00 4.20
2133 2161 5.080068 GTGTCGATCCGAAATGAGTTTTTC 58.920 41.667 0.00 0.00 37.72 2.29
2136 2164 6.017440 TGTCGATCCGAAATGAGTTTTTCTTT 60.017 34.615 0.00 0.00 37.72 2.52
2137 2165 6.520104 GTCGATCCGAAATGAGTTTTTCTTTC 59.480 38.462 0.00 0.00 37.72 2.62
2138 2166 6.426937 TCGATCCGAAATGAGTTTTTCTTTCT 59.573 34.615 0.00 0.00 34.19 2.52
2139 2167 7.041372 TCGATCCGAAATGAGTTTTTCTTTCTT 60.041 33.333 0.00 0.00 34.19 2.52
2142 2170 8.996024 TCCGAAATGAGTTTTTCTTTCTTTTT 57.004 26.923 0.00 0.00 34.19 1.94
2190 2224 7.509141 TTTTCAGTCTGAAATGCATTCACTA 57.491 32.000 24.98 6.84 44.75 2.74
2220 2254 5.630304 GCCTAATCCTTTCTCTTTACAGCCT 60.630 44.000 0.00 0.00 0.00 4.58
2222 2256 6.317391 CCTAATCCTTTCTCTTTACAGCCTTG 59.683 42.308 0.00 0.00 0.00 3.61
2223 2257 4.974645 TCCTTTCTCTTTACAGCCTTGA 57.025 40.909 0.00 0.00 0.00 3.02
2224 2258 5.505181 TCCTTTCTCTTTACAGCCTTGAT 57.495 39.130 0.00 0.00 0.00 2.57
2236 2271 3.057033 ACAGCCTTGATCAGATTTTGTGC 60.057 43.478 0.00 0.00 0.00 4.57
2265 2300 1.737793 CGTCCACCCTTTTATGCACTC 59.262 52.381 0.00 0.00 0.00 3.51
2312 2347 8.754096 TGAAAAATGAATTCATCGTTTCTTGTG 58.246 29.630 32.17 0.00 44.61 3.33
2314 2349 5.964958 ATGAATTCATCGTTTCTTGTGGT 57.035 34.783 15.36 0.00 28.78 4.16
2378 2416 2.100418 GGAGAGCAATGAAGCATTTCCC 59.900 50.000 0.00 0.00 36.85 3.97
2384 2422 2.493278 CAATGAAGCATTTCCCCGAAGT 59.507 45.455 0.00 0.00 31.05 3.01
2400 2438 4.321750 CCCGAAGTTTCTAAGTAGCACTGA 60.322 45.833 0.00 0.00 0.00 3.41
2414 2452 6.371389 AGTAGCACTGAATTTTCGTTAAAGC 58.629 36.000 0.00 0.00 0.00 3.51
2436 2474 0.721718 GCAACCTGCATCTGTCGTAC 59.278 55.000 0.00 0.00 44.26 3.67
2437 2475 1.359848 CAACCTGCATCTGTCGTACC 58.640 55.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.496692 GGCATGCCCAAGTATCTGATGTA 60.497 47.826 27.24 0.00 0.00 2.29
33 34 2.579873 GCATGCCCAAGTATCTGATGT 58.420 47.619 6.36 0.00 0.00 3.06
94 95 3.585289 TCCTCAAGTACTTGCCCACAATA 59.415 43.478 27.49 9.53 40.24 1.90
352 354 4.420143 CGTAGGTCCTTGATGCCG 57.580 61.111 0.00 0.00 0.00 5.69
372 374 6.441093 TGACCATCAAGCTGATATTTTGTC 57.559 37.500 0.00 0.00 34.28 3.18
520 522 9.899226 ATATAAACACTTTTGACTTTGAGAAGC 57.101 29.630 0.00 0.00 36.29 3.86
643 646 7.827236 TCAGGGAAATTACAAATATCGAACAGT 59.173 33.333 0.00 0.00 0.00 3.55
676 679 0.583438 CGCCCATCAGCTTATTCACG 59.417 55.000 0.00 0.00 0.00 4.35
795 798 1.416401 AGACTTTGTCACCATCACCGT 59.584 47.619 0.46 0.00 34.60 4.83
952 958 1.759445 AGCACTGCGTCCTGAGATAAT 59.241 47.619 0.00 0.00 0.00 1.28
973 979 1.819288 TCCCTCATCACTTGTCTCGTC 59.181 52.381 0.00 0.00 0.00 4.20
1018 1024 1.322442 ACTCCCTGCAAAAAGAGCAC 58.678 50.000 0.00 0.00 37.02 4.40
1184 1191 2.595238 CTAGGCCCACGGTATAGAAGT 58.405 52.381 0.00 0.00 0.00 3.01
1309 1316 8.651389 TCCTTTCTGTAATCCTGTCCAATATAG 58.349 37.037 0.00 0.00 0.00 1.31
1323 1330 2.237392 AGCCGCTTCTCCTTTCTGTAAT 59.763 45.455 0.00 0.00 0.00 1.89
1381 1388 3.125573 CATCAGCTGCAGCGTGCT 61.126 61.111 31.78 18.63 45.31 4.40
1399 1406 0.809636 TTGGCAGTGTCACACAGTCG 60.810 55.000 11.40 0.00 36.74 4.18
1411 1418 1.267806 CTGAATCGTTTGCTTGGCAGT 59.732 47.619 0.00 0.00 40.61 4.40
1466 1474 0.463474 GCCTCCAGCTTCAGACATCC 60.463 60.000 0.00 0.00 38.99 3.51
1467 1475 0.809241 CGCCTCCAGCTTCAGACATC 60.809 60.000 0.00 0.00 40.39 3.06
1489 1497 1.148759 GGCGCGAGAGAATGGAGAAC 61.149 60.000 12.10 0.00 0.00 3.01
1525 1533 0.533032 GCCCGAACTAGCAGAGACTT 59.467 55.000 0.00 0.00 0.00 3.01
1565 1573 6.147821 CCATACAAAAGAACGATCAGAACAGT 59.852 38.462 0.00 0.00 0.00 3.55
1626 1634 0.465460 GAAACGGATGCTATGGGGCA 60.465 55.000 0.00 0.00 46.63 5.36
1634 1642 0.744414 CCCACATCGAAACGGATGCT 60.744 55.000 2.65 0.00 46.11 3.79
1651 1659 3.879180 AAACCACCACATCCGCCCC 62.879 63.158 0.00 0.00 0.00 5.80
1667 1675 4.319190 CGAGTTCAAGCATTACCACGAAAA 60.319 41.667 0.00 0.00 0.00 2.29
1672 1680 2.076863 AGCGAGTTCAAGCATTACCAC 58.923 47.619 0.00 0.00 35.48 4.16
1738 1747 5.853572 ACCCCTTTCCATTACTAAGAACA 57.146 39.130 0.00 0.00 0.00 3.18
1859 1869 1.815003 CAGACTGGGCTCATTTTCACC 59.185 52.381 0.00 0.00 0.00 4.02
1903 1913 0.106708 TGTTGTGCCTGTCTCTGGAC 59.893 55.000 0.00 0.00 42.42 4.02
1938 1951 4.651994 CAGTTTGCGGTCAGAATATTGAC 58.348 43.478 0.00 0.00 45.28 3.18
1964 1981 5.509670 GGAGCCTATATATCGCACATGCATA 60.510 44.000 0.00 2.15 42.21 3.14
1965 1982 4.375272 GAGCCTATATATCGCACATGCAT 58.625 43.478 4.49 0.00 42.21 3.96
1966 1983 3.430790 GGAGCCTATATATCGCACATGCA 60.431 47.826 4.49 0.00 42.21 3.96
1967 1984 3.126831 GGAGCCTATATATCGCACATGC 58.873 50.000 7.30 0.00 37.78 4.06
1968 1985 4.391405 TGGAGCCTATATATCGCACATG 57.609 45.455 7.30 0.00 0.00 3.21
1971 1988 3.612860 CGTTTGGAGCCTATATATCGCAC 59.387 47.826 7.30 1.80 0.00 5.34
1973 1990 3.187700 CCGTTTGGAGCCTATATATCGC 58.812 50.000 0.00 0.00 37.49 4.58
1984 2011 2.282180 TTCTGGGCCGTTTGGAGC 60.282 61.111 0.00 0.00 37.49 4.70
1992 2019 2.289547 CCAATAAATACGTTCTGGGCCG 59.710 50.000 0.00 0.00 0.00 6.13
1995 2022 4.033587 CGTGTCCAATAAATACGTTCTGGG 59.966 45.833 0.00 0.00 0.00 4.45
2026 2053 3.813724 AGGCAAAGAAAACGAAGGACTAC 59.186 43.478 0.00 0.00 0.00 2.73
2030 2057 1.336755 GCAGGCAAAGAAAACGAAGGA 59.663 47.619 0.00 0.00 0.00 3.36
2056 2083 4.863707 ACAGCACTCCACACTGTG 57.136 55.556 6.19 6.19 42.83 3.66
2057 2084 1.524621 GCACAGCACTCCACACTGT 60.525 57.895 0.00 0.00 45.25 3.55
2058 2085 1.226686 GAGCACAGCACTCCACACTG 61.227 60.000 0.00 0.00 37.45 3.66
2080 2107 5.064558 AGCTCTATCTGGCATGAAAGATTG 58.935 41.667 13.80 12.26 34.91 2.67
2094 2121 1.484240 GACACCTGGCAAGCTCTATCT 59.516 52.381 0.00 0.00 0.00 1.98
2116 2144 9.599866 AAAAAGAAAGAAAAACTCATTTCGGAT 57.400 25.926 0.00 0.00 42.73 4.18
2133 2161 8.246871 ACTCTGGAAAACTGAAGAAAAAGAAAG 58.753 33.333 0.00 0.00 0.00 2.62
2136 2164 7.703058 AACTCTGGAAAACTGAAGAAAAAGA 57.297 32.000 0.00 0.00 0.00 2.52
2137 2165 8.763049 AAAACTCTGGAAAACTGAAGAAAAAG 57.237 30.769 0.00 0.00 0.00 2.27
2138 2166 8.364142 TGAAAACTCTGGAAAACTGAAGAAAAA 58.636 29.630 0.00 0.00 0.00 1.94
2139 2167 7.891561 TGAAAACTCTGGAAAACTGAAGAAAA 58.108 30.769 0.00 0.00 0.00 2.29
2142 2170 7.645058 AATGAAAACTCTGGAAAACTGAAGA 57.355 32.000 0.00 0.00 0.00 2.87
2145 2173 8.310382 TGAAAAATGAAAACTCTGGAAAACTGA 58.690 29.630 0.00 0.00 0.00 3.41
2149 2177 8.531146 AGACTGAAAAATGAAAACTCTGGAAAA 58.469 29.630 0.00 0.00 0.00 2.29
2151 2179 7.339212 TCAGACTGAAAAATGAAAACTCTGGAA 59.661 33.333 1.64 0.00 0.00 3.53
2190 2224 5.723860 AAGAGAAAGGATTAGGCAAGGAT 57.276 39.130 0.00 0.00 0.00 3.24
2220 2254 6.899393 AAAGGTAGCACAAAATCTGATCAA 57.101 33.333 0.00 0.00 0.00 2.57
2222 2256 6.024049 CGAAAAGGTAGCACAAAATCTGATC 58.976 40.000 0.00 0.00 0.00 2.92
2223 2257 5.473504 ACGAAAAGGTAGCACAAAATCTGAT 59.526 36.000 0.00 0.00 0.00 2.90
2224 2258 4.819630 ACGAAAAGGTAGCACAAAATCTGA 59.180 37.500 0.00 0.00 0.00 3.27
2236 2271 2.853235 AAGGGTGGACGAAAAGGTAG 57.147 50.000 0.00 0.00 0.00 3.18
2277 2312 9.778993 CGATGAATTCATTTTTCAGATAACTGT 57.221 29.630 21.57 0.00 39.67 3.55
2285 2320 8.971321 ACAAGAAACGATGAATTCATTTTTCAG 58.029 29.630 32.47 28.47 39.08 3.02
2312 2347 7.707893 TCCTGCATCGTAAGTATACTTTTAACC 59.292 37.037 22.66 8.66 37.40 2.85
2314 2349 7.437267 GCTCCTGCATCGTAAGTATACTTTTAA 59.563 37.037 22.66 9.26 39.41 1.52
2378 2416 4.806330 TCAGTGCTACTTAGAAACTTCGG 58.194 43.478 0.00 0.00 0.00 4.30
2384 2422 7.724305 ACGAAAATTCAGTGCTACTTAGAAA 57.276 32.000 0.00 0.00 0.00 2.52
2400 2438 5.234116 CAGGTTGCAAGCTTTAACGAAAATT 59.766 36.000 27.77 0.19 33.87 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.