Multiple sequence alignment - TraesCS4B01G274500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G274500 chr4B 100.000 5889 0 0 1 5889 552034714 552028826 0.000000e+00 10876
1 TraesCS4B01G274500 chr4D 94.002 4585 162 42 1352 5889 442907966 442903448 0.000000e+00 6839
2 TraesCS4B01G274500 chr4D 97.490 239 6 0 1112 1350 442908242 442908004 5.490000e-110 409
3 TraesCS4B01G274500 chr4D 92.973 185 1 2 632 804 442908968 442908784 5.850000e-65 259
4 TraesCS4B01G274500 chr4A 94.003 4119 154 46 1352 5414 24753710 24757791 0.000000e+00 6152
5 TraesCS4B01G274500 chr4A 86.752 468 49 7 1 456 24752096 24752562 5.270000e-140 508
6 TraesCS4B01G274500 chr4A 92.053 302 15 5 528 820 24752578 24752879 3.280000e-112 416
7 TraesCS4B01G274500 chr4A 85.185 405 27 15 5406 5790 24757958 24758349 9.260000e-103 385
8 TraesCS4B01G274500 chr4A 89.552 268 10 4 1084 1350 24753423 24753673 2.050000e-84 324
9 TraesCS4B01G274500 chr5A 95.455 616 25 3 3771 4384 268042021 268041407 0.000000e+00 979
10 TraesCS4B01G274500 chr3D 95.455 616 25 3 3771 4384 546264217 546263603 0.000000e+00 979
11 TraesCS4B01G274500 chr6A 95.130 616 27 3 3771 4384 545336288 545335674 0.000000e+00 968
12 TraesCS4B01G274500 chr6B 94.968 616 27 4 3771 4384 48058367 48058980 0.000000e+00 963
13 TraesCS4B01G274500 chr6B 94.968 616 27 4 3771 4384 48066619 48067232 0.000000e+00 963
14 TraesCS4B01G274500 chr1A 94.968 616 28 3 3771 4384 536684244 536684858 0.000000e+00 963
15 TraesCS4B01G274500 chr2B 94.805 616 29 3 3771 4384 576572009 576572623 0.000000e+00 957


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G274500 chr4B 552028826 552034714 5888 True 10876.000000 10876 100.000000 1 5889 1 chr4B.!!$R1 5888
1 TraesCS4B01G274500 chr4D 442903448 442908968 5520 True 2502.333333 6839 94.821667 632 5889 3 chr4D.!!$R1 5257
2 TraesCS4B01G274500 chr4A 24752096 24758349 6253 False 1557.000000 6152 89.509000 1 5790 5 chr4A.!!$F1 5789
3 TraesCS4B01G274500 chr5A 268041407 268042021 614 True 979.000000 979 95.455000 3771 4384 1 chr5A.!!$R1 613
4 TraesCS4B01G274500 chr3D 546263603 546264217 614 True 979.000000 979 95.455000 3771 4384 1 chr3D.!!$R1 613
5 TraesCS4B01G274500 chr6A 545335674 545336288 614 True 968.000000 968 95.130000 3771 4384 1 chr6A.!!$R1 613
6 TraesCS4B01G274500 chr6B 48058367 48058980 613 False 963.000000 963 94.968000 3771 4384 1 chr6B.!!$F1 613
7 TraesCS4B01G274500 chr6B 48066619 48067232 613 False 963.000000 963 94.968000 3771 4384 1 chr6B.!!$F2 613
8 TraesCS4B01G274500 chr1A 536684244 536684858 614 False 963.000000 963 94.968000 3771 4384 1 chr1A.!!$F1 613
9 TraesCS4B01G274500 chr2B 576572009 576572623 614 False 957.000000 957 94.805000 3771 4384 1 chr2B.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 901 0.031616 CTCTCCCTCTACCCCAAGCT 60.032 60.0 0.00 0.0 0.00 3.74 F
877 902 0.032017 TCTCCCTCTACCCCAAGCTC 60.032 60.0 0.00 0.0 0.00 4.09 F
907 932 0.036448 AGCTAGCTATCCGCCGTAGA 59.964 55.0 17.69 0.0 40.39 2.59 F
918 943 0.105224 CGCCGTAGAGAGAGAGGAGA 59.895 60.0 0.00 0.0 0.00 3.71 F
2605 2969 0.109086 TCTGCTCAGAGTAACAGCGC 60.109 55.0 0.00 0.0 35.81 5.92 F
2892 3256 0.171455 GCAGACGGTGAGTACAGAGG 59.829 60.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 2950 0.109086 GCGCTGTTACTCTGAGCAGA 60.109 55.000 12.97 0.00 39.62 4.26 R
2630 2994 3.054875 CAGGGGTCAGTGATGAATTCTGA 60.055 47.826 7.05 0.00 36.12 3.27 R
2753 3117 3.469008 TTGGTATAGGCAGAACCATCG 57.531 47.619 5.80 0.00 42.65 3.84 R
2918 3282 4.613437 ACCACTAAATGCCTTTGATCCAT 58.387 39.130 0.00 0.00 0.00 3.41 R
4588 4970 0.034896 GTTTCTCTCCGGCAACAGGA 59.965 55.000 0.00 0.00 37.62 3.86 R
4898 5284 0.104777 ATGGCTAGCTGGGAGGATCA 60.105 55.000 15.72 0.44 36.25 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.807275 CAGAGCATCGCCGTTGATCA 60.807 55.000 14.88 0.00 42.67 2.92
45 46 0.657312 GCATCGCCGTTGATCATCAA 59.343 50.000 0.00 0.00 33.32 2.57
97 98 2.706555 TATTAGCAGAGCATCGTCGG 57.293 50.000 0.00 0.00 42.67 4.79
108 109 0.914551 CATCGTCGGTGATCGTCAAC 59.085 55.000 0.00 0.00 40.32 3.18
111 112 0.386858 CGTCGGTGATCGTCAACAGT 60.387 55.000 4.37 0.00 32.48 3.55
118 119 4.242475 GGTGATCGTCAACAGTTGTATCA 58.758 43.478 13.14 15.81 33.38 2.15
120 121 3.917985 TGATCGTCAACAGTTGTATCACG 59.082 43.478 15.64 15.64 0.00 4.35
121 122 2.668250 TCGTCAACAGTTGTATCACGG 58.332 47.619 19.52 6.79 0.00 4.94
140 142 1.895131 GGGTTAGTACCACCACGAGAA 59.105 52.381 12.75 0.00 46.96 2.87
141 143 2.353109 GGGTTAGTACCACCACGAGAAC 60.353 54.545 12.75 0.00 46.96 3.01
144 146 1.542492 AGTACCACCACGAGAACGAT 58.458 50.000 0.00 0.00 42.66 3.73
193 195 1.068588 TCGTTCTGAGAGTTGTGGTGG 59.931 52.381 0.00 0.00 0.00 4.61
196 198 3.491964 CGTTCTGAGAGTTGTGGTGGTAA 60.492 47.826 0.00 0.00 0.00 2.85
199 201 6.407202 GTTCTGAGAGTTGTGGTGGTAATAT 58.593 40.000 0.00 0.00 0.00 1.28
213 215 9.507329 GTGGTGGTAATATCATTATGACATCTT 57.493 33.333 0.00 0.00 0.00 2.40
256 259 9.732130 AGAACATAGAAATTAGGCATATTCTCC 57.268 33.333 0.00 0.00 34.24 3.71
258 261 7.406104 ACATAGAAATTAGGCATATTCTCCCC 58.594 38.462 0.00 0.00 34.24 4.81
267 270 1.278985 CATATTCTCCCCTGCGCCATA 59.721 52.381 4.18 0.00 0.00 2.74
275 278 1.206849 CCCCTGCGCCATAAAAACAAT 59.793 47.619 4.18 0.00 0.00 2.71
279 282 4.202101 CCCTGCGCCATAAAAACAATATCA 60.202 41.667 4.18 0.00 0.00 2.15
335 340 3.558418 CCGATGGTGACTAATAAAACCCG 59.442 47.826 0.00 0.00 31.30 5.28
336 341 4.186159 CGATGGTGACTAATAAAACCCGT 58.814 43.478 0.00 0.00 31.30 5.28
338 343 5.461078 CGATGGTGACTAATAAAACCCGTAG 59.539 44.000 0.00 0.00 31.30 3.51
339 344 5.743636 TGGTGACTAATAAAACCCGTAGT 57.256 39.130 0.00 0.00 31.30 2.73
360 365 2.100252 TGAGTAATCGCCTCTAAACCCG 59.900 50.000 0.00 0.00 0.00 5.28
396 407 9.755804 GAAAAGGATCAGAAAAGAAGAACAATT 57.244 29.630 0.00 0.00 0.00 2.32
427 439 9.929180 TTATTATCAATTCACCCTCTTAGATCG 57.071 33.333 0.00 0.00 0.00 3.69
445 457 8.786826 TTAGATCGTCACATAAAACCAAAGAT 57.213 30.769 0.00 0.00 0.00 2.40
449 461 9.834628 GATCGTCACATAAAACCAAAGATAAAA 57.165 29.630 0.00 0.00 0.00 1.52
450 462 9.620660 ATCGTCACATAAAACCAAAGATAAAAC 57.379 29.630 0.00 0.00 0.00 2.43
451 463 8.622157 TCGTCACATAAAACCAAAGATAAAACA 58.378 29.630 0.00 0.00 0.00 2.83
452 464 9.239002 CGTCACATAAAACCAAAGATAAAACAA 57.761 29.630 0.00 0.00 0.00 2.83
475 487 9.799106 ACAAAAACTACTACTACTACTACTGGA 57.201 33.333 0.00 0.00 0.00 3.86
485 497 7.706100 ACTACTACTACTGGAAAAAGAGAGG 57.294 40.000 0.00 0.00 0.00 3.69
494 506 7.751768 ACTGGAAAAAGAGAGGAAATTACAG 57.248 36.000 0.00 0.00 0.00 2.74
507 519 9.847224 AGAGGAAATTACAGTAAAGAAAAGTCA 57.153 29.630 0.00 0.00 0.00 3.41
508 520 9.880064 GAGGAAATTACAGTAAAGAAAAGTCAC 57.120 33.333 0.00 0.00 0.00 3.67
509 521 9.403583 AGGAAATTACAGTAAAGAAAAGTCACA 57.596 29.630 0.00 0.00 0.00 3.58
554 566 2.397597 AGTCCCAAGTTGCAATTGGTT 58.602 42.857 25.66 15.35 44.81 3.67
555 567 2.365293 AGTCCCAAGTTGCAATTGGTTC 59.635 45.455 25.66 20.32 44.81 3.62
563 575 3.068590 AGTTGCAATTGGTTCAGGACAAG 59.931 43.478 0.59 0.00 0.00 3.16
583 596 8.101419 GGACAAGTAAAATAGAGGAAAAGGAGA 58.899 37.037 0.00 0.00 0.00 3.71
590 603 7.477945 AAATAGAGGAAAAGGAGAAGACGTA 57.522 36.000 0.00 0.00 0.00 3.57
594 607 4.664392 AGGAAAAGGAGAAGACGTAGAGA 58.336 43.478 0.00 0.00 0.00 3.10
600 613 3.264964 AGGAGAAGACGTAGAGAAGGAGT 59.735 47.826 0.00 0.00 0.00 3.85
739 763 3.605749 TTTTCCCCTCGCAGCTCGG 62.606 63.158 5.87 0.00 39.05 4.63
826 851 4.150454 CTCGCCTCCCTCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
827 852 2.698788 TCGCCTCCCTCCCTCCTA 60.699 66.667 0.00 0.00 0.00 2.94
828 853 2.087857 CTCGCCTCCCTCCCTCCTAT 62.088 65.000 0.00 0.00 0.00 2.57
829 854 1.608046 CGCCTCCCTCCCTCCTATC 60.608 68.421 0.00 0.00 0.00 2.08
830 855 1.229368 GCCTCCCTCCCTCCTATCC 60.229 68.421 0.00 0.00 0.00 2.59
831 856 1.471999 CCTCCCTCCCTCCTATCCC 59.528 68.421 0.00 0.00 0.00 3.85
832 857 1.471999 CTCCCTCCCTCCTATCCCC 59.528 68.421 0.00 0.00 0.00 4.81
833 858 1.311464 TCCCTCCCTCCTATCCCCA 60.311 63.158 0.00 0.00 0.00 4.96
834 859 1.152008 CCCTCCCTCCTATCCCCAC 60.152 68.421 0.00 0.00 0.00 4.61
835 860 1.152008 CCTCCCTCCTATCCCCACC 60.152 68.421 0.00 0.00 0.00 4.61
836 861 1.534235 CTCCCTCCTATCCCCACCG 60.534 68.421 0.00 0.00 0.00 4.94
837 862 3.242291 CCCTCCTATCCCCACCGC 61.242 72.222 0.00 0.00 0.00 5.68
838 863 3.242291 CCTCCTATCCCCACCGCC 61.242 72.222 0.00 0.00 0.00 6.13
839 864 3.242291 CTCCTATCCCCACCGCCC 61.242 72.222 0.00 0.00 0.00 6.13
854 879 2.770048 CCCGCCTCCCTCCTTCAT 60.770 66.667 0.00 0.00 0.00 2.57
855 880 1.459539 CCCGCCTCCCTCCTTCATA 60.460 63.158 0.00 0.00 0.00 2.15
856 881 0.838122 CCCGCCTCCCTCCTTCATAT 60.838 60.000 0.00 0.00 0.00 1.78
857 882 0.610687 CCGCCTCCCTCCTTCATATC 59.389 60.000 0.00 0.00 0.00 1.63
858 883 1.638529 CGCCTCCCTCCTTCATATCT 58.361 55.000 0.00 0.00 0.00 1.98
859 884 1.548269 CGCCTCCCTCCTTCATATCTC 59.452 57.143 0.00 0.00 0.00 2.75
860 885 2.821245 CGCCTCCCTCCTTCATATCTCT 60.821 54.545 0.00 0.00 0.00 3.10
861 886 2.831526 GCCTCCCTCCTTCATATCTCTC 59.168 54.545 0.00 0.00 0.00 3.20
862 887 3.440127 CCTCCCTCCTTCATATCTCTCC 58.560 54.545 0.00 0.00 0.00 3.71
863 888 3.440127 CTCCCTCCTTCATATCTCTCCC 58.560 54.545 0.00 0.00 0.00 4.30
864 889 3.075181 TCCCTCCTTCATATCTCTCCCT 58.925 50.000 0.00 0.00 0.00 4.20
865 890 3.076785 TCCCTCCTTCATATCTCTCCCTC 59.923 52.174 0.00 0.00 0.00 4.30
866 891 3.077391 CCCTCCTTCATATCTCTCCCTCT 59.923 52.174 0.00 0.00 0.00 3.69
867 892 4.293634 CCCTCCTTCATATCTCTCCCTCTA 59.706 50.000 0.00 0.00 0.00 2.43
868 893 5.261216 CCTCCTTCATATCTCTCCCTCTAC 58.739 50.000 0.00 0.00 0.00 2.59
869 894 5.261216 CTCCTTCATATCTCTCCCTCTACC 58.739 50.000 0.00 0.00 0.00 3.18
870 895 4.044825 TCCTTCATATCTCTCCCTCTACCC 59.955 50.000 0.00 0.00 0.00 3.69
871 896 4.349365 CTTCATATCTCTCCCTCTACCCC 58.651 52.174 0.00 0.00 0.00 4.95
872 897 3.346028 TCATATCTCTCCCTCTACCCCA 58.654 50.000 0.00 0.00 0.00 4.96
873 898 3.732742 TCATATCTCTCCCTCTACCCCAA 59.267 47.826 0.00 0.00 0.00 4.12
874 899 2.785357 ATCTCTCCCTCTACCCCAAG 57.215 55.000 0.00 0.00 0.00 3.61
875 900 0.032017 TCTCTCCCTCTACCCCAAGC 60.032 60.000 0.00 0.00 0.00 4.01
876 901 0.031616 CTCTCCCTCTACCCCAAGCT 60.032 60.000 0.00 0.00 0.00 3.74
877 902 0.032017 TCTCCCTCTACCCCAAGCTC 60.032 60.000 0.00 0.00 0.00 4.09
878 903 1.381327 TCCCTCTACCCCAAGCTCG 60.381 63.158 0.00 0.00 0.00 5.03
879 904 2.435693 CCCTCTACCCCAAGCTCGG 61.436 68.421 0.00 0.00 0.00 4.63
880 905 2.435693 CCTCTACCCCAAGCTCGGG 61.436 68.421 15.78 15.78 46.94 5.14
881 906 3.081409 TCTACCCCAAGCTCGGGC 61.081 66.667 17.02 0.00 45.90 6.13
882 907 4.176752 CTACCCCAAGCTCGGGCC 62.177 72.222 17.02 0.00 45.90 5.80
883 908 4.733725 TACCCCAAGCTCGGGCCT 62.734 66.667 17.02 1.30 45.90 5.19
887 912 4.729918 CCAAGCTCGGGCCTTGCT 62.730 66.667 2.00 13.24 39.73 3.91
888 913 2.268920 CAAGCTCGGGCCTTGCTA 59.731 61.111 18.09 0.00 39.73 3.49
889 914 1.817099 CAAGCTCGGGCCTTGCTAG 60.817 63.158 18.09 2.14 39.73 3.42
890 915 3.689002 AAGCTCGGGCCTTGCTAGC 62.689 63.158 18.09 8.10 39.73 3.42
891 916 4.168291 GCTCGGGCCTTGCTAGCT 62.168 66.667 17.23 0.00 0.00 3.32
892 917 2.797278 GCTCGGGCCTTGCTAGCTA 61.797 63.158 17.23 7.59 0.00 3.32
893 918 1.365633 CTCGGGCCTTGCTAGCTAG 59.634 63.158 16.84 16.84 0.00 3.42
903 928 1.137825 GCTAGCTAGCTATCCGCCG 59.862 63.158 33.71 12.78 45.62 6.46
904 929 1.587933 GCTAGCTAGCTATCCGCCGT 61.588 60.000 33.71 0.00 45.62 5.68
905 930 1.735386 CTAGCTAGCTATCCGCCGTA 58.265 55.000 24.36 1.22 40.39 4.02
906 931 1.666700 CTAGCTAGCTATCCGCCGTAG 59.333 57.143 24.36 7.90 40.39 3.51
907 932 0.036448 AGCTAGCTATCCGCCGTAGA 59.964 55.000 17.69 0.00 40.39 2.59
908 933 0.448593 GCTAGCTATCCGCCGTAGAG 59.551 60.000 7.70 0.00 40.39 2.43
909 934 1.944892 GCTAGCTATCCGCCGTAGAGA 60.945 57.143 7.70 0.00 40.39 3.10
910 935 2.004017 CTAGCTATCCGCCGTAGAGAG 58.996 57.143 0.00 0.00 40.39 3.20
911 936 0.397187 AGCTATCCGCCGTAGAGAGA 59.603 55.000 0.00 0.00 40.39 3.10
912 937 0.800012 GCTATCCGCCGTAGAGAGAG 59.200 60.000 0.00 0.00 0.00 3.20
913 938 1.608542 GCTATCCGCCGTAGAGAGAGA 60.609 57.143 0.00 0.00 0.00 3.10
914 939 2.343101 CTATCCGCCGTAGAGAGAGAG 58.657 57.143 0.00 0.00 0.00 3.20
915 940 0.250553 ATCCGCCGTAGAGAGAGAGG 60.251 60.000 0.00 0.00 0.00 3.69
916 941 1.146485 CCGCCGTAGAGAGAGAGGA 59.854 63.158 0.00 0.00 0.00 3.71
917 942 0.882927 CCGCCGTAGAGAGAGAGGAG 60.883 65.000 0.00 0.00 0.00 3.69
918 943 0.105224 CGCCGTAGAGAGAGAGGAGA 59.895 60.000 0.00 0.00 0.00 3.71
919 944 1.473610 CGCCGTAGAGAGAGAGGAGAA 60.474 57.143 0.00 0.00 0.00 2.87
920 945 2.218603 GCCGTAGAGAGAGAGGAGAAG 58.781 57.143 0.00 0.00 0.00 2.85
921 946 2.846193 CCGTAGAGAGAGAGGAGAAGG 58.154 57.143 0.00 0.00 0.00 3.46
922 947 2.436542 CCGTAGAGAGAGAGGAGAAGGA 59.563 54.545 0.00 0.00 0.00 3.36
923 948 3.118186 CCGTAGAGAGAGAGGAGAAGGAA 60.118 52.174 0.00 0.00 0.00 3.36
924 949 4.127171 CGTAGAGAGAGAGGAGAAGGAAG 58.873 52.174 0.00 0.00 0.00 3.46
925 950 3.669939 AGAGAGAGAGGAGAAGGAAGG 57.330 52.381 0.00 0.00 0.00 3.46
926 951 3.197983 AGAGAGAGAGGAGAAGGAAGGA 58.802 50.000 0.00 0.00 0.00 3.36
927 952 3.203040 AGAGAGAGAGGAGAAGGAAGGAG 59.797 52.174 0.00 0.00 0.00 3.69
928 953 2.244769 AGAGAGAGGAGAAGGAAGGAGG 59.755 54.545 0.00 0.00 0.00 4.30
929 954 1.119684 GAGAGGAGAAGGAAGGAGGC 58.880 60.000 0.00 0.00 0.00 4.70
930 955 0.326143 AGAGGAGAAGGAAGGAGGCC 60.326 60.000 0.00 0.00 0.00 5.19
931 956 1.307430 AGGAGAAGGAAGGAGGCCC 60.307 63.158 0.00 0.00 0.00 5.80
932 957 2.736826 GGAGAAGGAAGGAGGCCCG 61.737 68.421 0.00 0.00 37.58 6.13
933 958 2.689034 AGAAGGAAGGAGGCCCGG 60.689 66.667 0.00 0.00 37.58 5.73
934 959 3.798511 GAAGGAAGGAGGCCCGGG 61.799 72.222 19.09 19.09 37.58 5.73
957 982 2.263540 CGGTTGGTTCCGTCGGAT 59.736 61.111 16.23 0.00 44.77 4.18
958 983 1.808390 CGGTTGGTTCCGTCGGATC 60.808 63.158 16.23 14.42 44.77 3.36
959 984 1.595357 GGTTGGTTCCGTCGGATCT 59.405 57.895 16.23 0.00 0.00 2.75
960 985 0.459759 GGTTGGTTCCGTCGGATCTC 60.460 60.000 16.23 8.78 0.00 2.75
961 986 0.801067 GTTGGTTCCGTCGGATCTCG 60.801 60.000 16.23 0.00 40.90 4.04
962 987 2.278661 GGTTCCGTCGGATCTCGC 60.279 66.667 16.23 3.51 39.05 5.03
963 988 2.278661 GTTCCGTCGGATCTCGCC 60.279 66.667 16.23 0.00 39.05 5.54
964 989 2.439701 TTCCGTCGGATCTCGCCT 60.440 61.111 16.23 0.00 39.05 5.52
965 990 2.478890 TTCCGTCGGATCTCGCCTC 61.479 63.158 16.23 0.00 39.05 4.70
966 991 3.967335 CCGTCGGATCTCGCCTCC 61.967 72.222 4.91 0.00 39.05 4.30
967 992 3.209812 CGTCGGATCTCGCCTCCA 61.210 66.667 0.00 0.00 39.05 3.86
968 993 2.725008 GTCGGATCTCGCCTCCAG 59.275 66.667 0.00 0.00 39.05 3.86
969 994 2.519541 TCGGATCTCGCCTCCAGG 60.520 66.667 0.00 0.00 39.05 4.45
970 995 2.835431 CGGATCTCGCCTCCAGGT 60.835 66.667 0.00 0.00 37.57 4.00
971 996 2.851071 CGGATCTCGCCTCCAGGTC 61.851 68.421 0.00 0.00 37.57 3.85
972 997 1.758514 GGATCTCGCCTCCAGGTCA 60.759 63.158 0.00 0.00 37.57 4.02
973 998 1.439644 GATCTCGCCTCCAGGTCAC 59.560 63.158 0.00 0.00 37.57 3.67
974 999 2.022240 GATCTCGCCTCCAGGTCACC 62.022 65.000 0.00 0.00 37.57 4.02
975 1000 3.775654 CTCGCCTCCAGGTCACCC 61.776 72.222 0.00 0.00 37.57 4.61
978 1003 4.083862 GCCTCCAGGTCACCCGTC 62.084 72.222 0.00 0.00 37.57 4.79
979 1004 2.283966 CCTCCAGGTCACCCGTCT 60.284 66.667 0.00 0.00 35.12 4.18
980 1005 2.650116 CCTCCAGGTCACCCGTCTG 61.650 68.421 0.00 0.00 35.12 3.51
981 1006 3.302347 CTCCAGGTCACCCGTCTGC 62.302 68.421 0.00 0.00 35.12 4.26
982 1007 3.314331 CCAGGTCACCCGTCTGCT 61.314 66.667 0.00 0.00 35.12 4.24
983 1008 2.047844 CAGGTCACCCGTCTGCTG 60.048 66.667 0.00 0.00 35.12 4.41
984 1009 3.314331 AGGTCACCCGTCTGCTGG 61.314 66.667 0.00 0.00 35.12 4.85
991 1016 2.415010 CCGTCTGCTGGGATCTCG 59.585 66.667 0.00 0.00 0.00 4.04
992 1017 2.279120 CGTCTGCTGGGATCTCGC 60.279 66.667 2.91 2.91 0.00 5.03
993 1018 2.107953 GTCTGCTGGGATCTCGCC 59.892 66.667 6.90 0.00 0.00 5.54
1002 1027 4.996434 GATCTCGCCCGCCCCATG 62.996 72.222 0.00 0.00 0.00 3.66
1161 1467 3.428746 TTGTGGTTGGTTTGTCGATTG 57.571 42.857 0.00 0.00 0.00 2.67
1165 1471 0.958822 GTTGGTTTGTCGATTGGGCT 59.041 50.000 0.00 0.00 0.00 5.19
1379 1721 4.293662 AGTCTTCAAGGTTTGGGATCTC 57.706 45.455 0.00 0.00 0.00 2.75
1380 1722 3.913163 AGTCTTCAAGGTTTGGGATCTCT 59.087 43.478 0.00 0.00 0.00 3.10
1598 1950 5.282055 TCCAGGTGATATGTGATTCTGAC 57.718 43.478 0.00 0.00 0.00 3.51
1665 2017 2.885113 CTCAGCGTGTCGATCCCA 59.115 61.111 0.00 0.00 0.00 4.37
1762 2114 3.458163 GTGAGGGACCGGCGATCA 61.458 66.667 9.30 0.00 0.00 2.92
1763 2115 3.458163 TGAGGGACCGGCGATCAC 61.458 66.667 9.30 0.00 0.00 3.06
1799 2151 2.391879 GCTTGCTGCTTCTTTTCAGTG 58.608 47.619 0.00 0.00 38.95 3.66
1800 2152 2.223665 GCTTGCTGCTTCTTTTCAGTGT 60.224 45.455 0.00 0.00 38.95 3.55
1801 2153 3.003689 GCTTGCTGCTTCTTTTCAGTGTA 59.996 43.478 0.00 0.00 38.95 2.90
1998 2353 6.015095 TGCACCATGAGTCATATTCCTAGTAG 60.015 42.308 5.03 0.00 0.00 2.57
1999 2354 6.015010 GCACCATGAGTCATATTCCTAGTAGT 60.015 42.308 5.03 0.00 0.00 2.73
2000 2355 7.176865 GCACCATGAGTCATATTCCTAGTAGTA 59.823 40.741 5.03 0.00 0.00 1.82
2120 2480 7.279750 TCTTTTGGTATGGTTTGTACCTTTC 57.720 36.000 4.20 0.00 45.27 2.62
2127 2487 4.186077 TGGTTTGTACCTTTCATGGGAA 57.814 40.909 0.00 0.00 45.27 3.97
2157 2517 5.236047 GCTTCTTATTATGGTCTGTGCAGAG 59.764 44.000 4.05 4.05 38.27 3.35
2205 2565 7.434897 TCAAAAGTATTGTTCATGCTGTTTGTC 59.565 33.333 0.00 0.00 33.06 3.18
2217 2577 3.751175 TGCTGTTTGTCTGCCACTAATAC 59.249 43.478 0.00 0.00 39.70 1.89
2218 2578 3.127030 GCTGTTTGTCTGCCACTAATACC 59.873 47.826 0.00 0.00 35.43 2.73
2244 2604 9.941664 CATCTTGTATTGAGAATGTTAACATCC 57.058 33.333 21.02 9.31 35.10 3.51
2249 2609 9.378551 TGTATTGAGAATGTTAACATCCTGTAC 57.621 33.333 21.02 15.16 35.10 2.90
2250 2610 9.601217 GTATTGAGAATGTTAACATCCTGTACT 57.399 33.333 21.02 12.84 35.10 2.73
2257 2617 9.817809 GAATGTTAACATCCTGTACTATCTCAA 57.182 33.333 21.02 0.00 35.10 3.02
2266 2626 9.599866 CATCCTGTACTATCTCAATTTGTTGTA 57.400 33.333 0.00 0.00 0.00 2.41
2268 2628 8.812972 TCCTGTACTATCTCAATTTGTTGTACT 58.187 33.333 0.00 0.00 32.76 2.73
2271 2631 9.772973 TGTACTATCTCAATTTGTTGTACTTGT 57.227 29.630 0.00 0.00 32.76 3.16
2317 2678 7.917505 GGACATCAGAATTAACTTGCTAATTGG 59.082 37.037 0.00 0.00 32.77 3.16
2329 2690 8.962884 AACTTGCTAATTGGTCTTTGAATTTT 57.037 26.923 0.00 0.00 0.00 1.82
2330 2691 8.369218 ACTTGCTAATTGGTCTTTGAATTTTG 57.631 30.769 0.00 0.00 0.00 2.44
2481 2842 0.759436 TCAGCCTCCTACCCCGATTC 60.759 60.000 0.00 0.00 0.00 2.52
2605 2969 0.109086 TCTGCTCAGAGTAACAGCGC 60.109 55.000 0.00 0.00 35.81 5.92
2630 2994 1.216990 CTCCCCTTGGGTCAAGCTAT 58.783 55.000 4.84 0.00 44.74 2.97
2892 3256 0.171455 GCAGACGGTGAGTACAGAGG 59.829 60.000 0.00 0.00 0.00 3.69
2902 3266 4.452455 GGTGAGTACAGAGGAATTGTGTTG 59.548 45.833 0.00 0.00 34.68 3.33
2904 3268 5.758296 GTGAGTACAGAGGAATTGTGTTGAA 59.242 40.000 0.00 0.00 34.68 2.69
2994 3358 2.003301 GCTAAGGCACTACACTGCTTC 58.997 52.381 0.00 0.00 38.49 3.86
2995 3359 2.612972 GCTAAGGCACTACACTGCTTCA 60.613 50.000 0.00 0.00 38.49 3.02
2996 3360 2.867109 AAGGCACTACACTGCTTCAT 57.133 45.000 0.00 0.00 38.49 2.57
3055 3419 7.466746 TCCTTGCAATGAAGTTTTAAGCTAT 57.533 32.000 0.00 0.00 0.00 2.97
3074 3438 3.668596 ATTGTATTTGTTAGGACGCGC 57.331 42.857 5.73 0.00 0.00 6.86
3096 3460 8.223769 CGCGCTCTCAATAAACTTTGATATTAT 58.776 33.333 5.56 0.00 35.20 1.28
3142 3506 1.398390 GGTTCTTGCATAGAAGGCACG 59.602 52.381 10.39 0.00 43.39 5.34
3149 3513 2.677836 TGCATAGAAGGCACGTTTGATC 59.322 45.455 0.00 0.00 36.11 2.92
3183 3547 9.410556 CCTGTTTATGAAGTTTTACCTTGATTG 57.589 33.333 0.00 0.00 0.00 2.67
3507 3886 3.743269 CGGTGGGGTGTTTCTATGGATAC 60.743 52.174 0.00 0.00 0.00 2.24
3649 4028 6.129179 AGCATTTGGCCATACTGTTACTATT 58.871 36.000 6.09 0.00 46.50 1.73
3689 4068 3.319122 CCTCCCTTCAAGTGAAAACAAGG 59.681 47.826 0.00 0.00 33.07 3.61
3960 4340 5.312895 TGCTACTGCTTTAGGAATGTTCAA 58.687 37.500 0.00 0.00 40.48 2.69
3992 4372 4.582240 CCTTGGGCTAATTGAATCTCCTTC 59.418 45.833 0.00 0.00 0.00 3.46
4181 4561 3.449018 AGCACATCGTCCTAGAGAACAAT 59.551 43.478 0.00 0.00 0.00 2.71
4242 4622 7.822334 AGGATGTAAGTGTCGATGAATGTTTAA 59.178 33.333 0.00 0.00 0.00 1.52
4267 4647 3.553828 TTTTTGGTTCTCTGACGTCCT 57.446 42.857 14.12 0.00 0.00 3.85
4274 4654 3.251487 GGTTCTCTGACGTCCTAGATAGC 59.749 52.174 14.12 11.38 0.00 2.97
4395 4777 4.542697 AGACCTCTATCCTGGAAGACTTC 58.457 47.826 6.66 6.66 34.07 3.01
4474 4856 6.057533 CAGATCCAAAAGCAGGTACATATGA 58.942 40.000 10.38 0.00 0.00 2.15
4481 4863 7.268586 CAAAAGCAGGTACATATGACTCTAGT 58.731 38.462 10.38 0.00 0.00 2.57
4506 4888 4.200838 TCGTCATTTCTCATTACTGCCA 57.799 40.909 0.00 0.00 0.00 4.92
4553 4935 7.934855 AGCAACTCTGAATTGATTGTCTAAT 57.065 32.000 2.61 0.00 0.00 1.73
4576 4958 1.251251 GTACGTAGGTGTGGGACAGT 58.749 55.000 0.00 0.00 41.80 3.55
4588 4970 1.049289 GGGACAGTAGGGCTCCGAAT 61.049 60.000 0.00 0.00 0.00 3.34
4597 4979 2.115291 GGCTCCGAATCCTGTTGCC 61.115 63.158 0.00 0.00 0.00 4.52
4609 4991 1.151668 CTGTTGCCGGAGAGAAACAG 58.848 55.000 5.05 12.36 42.37 3.16
4612 4994 0.179032 TTGCCGGAGAGAAACAGCAA 60.179 50.000 5.05 0.00 37.85 3.91
4616 4998 1.801178 CCGGAGAGAAACAGCAAGAAC 59.199 52.381 0.00 0.00 0.00 3.01
4639 5021 1.659794 CAACGGGAAGCCAAAGGTG 59.340 57.895 0.00 0.00 0.00 4.00
4643 5025 0.955919 CGGGAAGCCAAAGGTGTCTC 60.956 60.000 0.00 0.00 0.00 3.36
4663 5045 3.573558 CCGAACGGTGTCAATGGG 58.426 61.111 4.99 0.00 0.00 4.00
4702 5084 2.238521 GTCAATGGGAAGCCAAAGTCA 58.761 47.619 0.00 0.00 0.00 3.41
4711 5093 0.764890 AGCCAAAGTCACCTGTAGCA 59.235 50.000 0.00 0.00 0.00 3.49
4840 5225 2.429930 CCTGTGGCCACCGAGAAA 59.570 61.111 32.62 12.36 0.00 2.52
4898 5284 0.467384 AGCTGCTTGATCGCATACCT 59.533 50.000 0.00 0.00 39.52 3.08
4920 5306 0.762082 TCCTCCCAGCTAGCCATGAG 60.762 60.000 12.13 13.81 0.00 2.90
4960 5346 1.375908 GAACCAGGCGAGACATGCA 60.376 57.895 0.00 0.00 0.00 3.96
4967 5354 2.187946 CGAGACATGCAGGGTCCC 59.812 66.667 15.46 0.00 35.89 4.46
4969 5356 1.685224 GAGACATGCAGGGTCCCAA 59.315 57.895 11.55 0.00 35.89 4.12
4974 5361 0.394352 CATGCAGGGTCCCAAGTACC 60.394 60.000 11.55 0.00 36.19 3.34
5003 5393 2.597510 GTGGCTGGAAAGCGGGTT 60.598 61.111 0.00 0.00 35.24 4.11
5018 5408 3.776417 AGCGGGTTGGATAGTTAGGTTTA 59.224 43.478 0.00 0.00 0.00 2.01
5019 5409 4.411212 AGCGGGTTGGATAGTTAGGTTTAT 59.589 41.667 0.00 0.00 0.00 1.40
5020 5410 5.104235 AGCGGGTTGGATAGTTAGGTTTATT 60.104 40.000 0.00 0.00 0.00 1.40
5034 5430 7.403522 AGTTAGGTTTATTCCCTAGCTCTCTTT 59.596 37.037 0.00 0.00 40.80 2.52
5039 5435 7.281324 GGTTTATTCCCTAGCTCTCTTTTTCTC 59.719 40.741 0.00 0.00 0.00 2.87
5045 5441 4.221703 CCTAGCTCTCTTTTTCTCCTGTCA 59.778 45.833 0.00 0.00 0.00 3.58
5059 5458 4.454847 TCTCCTGTCATCGTCGTATTATCC 59.545 45.833 0.00 0.00 0.00 2.59
5060 5459 3.187842 TCCTGTCATCGTCGTATTATCCG 59.812 47.826 0.00 0.00 0.00 4.18
5115 5517 6.490492 TCCTATAGTGGTATCATCGGAATCA 58.510 40.000 0.00 0.00 0.00 2.57
5248 5661 7.439955 TGGTGTTTGAGTAAGTACTATGTGTTG 59.560 37.037 0.00 0.00 36.50 3.33
5249 5662 7.440255 GGTGTTTGAGTAAGTACTATGTGTTGT 59.560 37.037 0.00 0.00 36.50 3.32
5250 5663 8.273557 GTGTTTGAGTAAGTACTATGTGTTGTG 58.726 37.037 0.00 0.00 36.50 3.33
5251 5664 7.982919 TGTTTGAGTAAGTACTATGTGTTGTGT 59.017 33.333 0.00 0.00 36.50 3.72
5365 5782 3.610040 TGGTTTCGTATCTGCTGATGT 57.390 42.857 15.71 0.00 34.32 3.06
5500 6102 1.455959 TTGTGGTTCCGTTTGGGGG 60.456 57.895 0.00 0.00 36.01 5.40
5533 6135 1.593196 GTGTGCTTGGTTGAGTGCTA 58.407 50.000 0.00 0.00 0.00 3.49
5560 6162 2.551721 CCTCACTGCTTGTCCACTTGAT 60.552 50.000 0.00 0.00 0.00 2.57
5575 6181 7.177216 TGTCCACTTGATATGCTTCAGAATTTT 59.823 33.333 0.00 0.00 0.00 1.82
5607 6213 0.465460 TGGTTGCTTGGTGAGTGGTC 60.465 55.000 0.00 0.00 0.00 4.02
5662 6268 4.202030 GGTTTGTATCCTAGAGAGGTGTCG 60.202 50.000 0.00 0.00 44.19 4.35
5679 6285 3.067106 TGTCGAGCTCAGCTTAAAAAGG 58.933 45.455 15.40 0.00 39.88 3.11
5703 6313 2.375146 TGGAACGATCACTAGCTGCTA 58.625 47.619 9.34 9.34 0.00 3.49
5724 6334 1.229428 GTGTCATGGTGGTGTCACTG 58.771 55.000 2.35 0.00 43.17 3.66
5729 6339 1.174712 ATGGTGGTGTCACTGCTTGC 61.175 55.000 2.35 0.00 43.17 4.01
5730 6340 1.823470 GGTGGTGTCACTGCTTGCA 60.823 57.895 2.35 0.00 43.17 4.08
5731 6341 1.356624 GTGGTGTCACTGCTTGCAC 59.643 57.895 2.35 0.00 40.58 4.57
5732 6342 1.097547 GTGGTGTCACTGCTTGCACT 61.098 55.000 2.35 0.00 40.58 4.40
5733 6343 1.096967 TGGTGTCACTGCTTGCACTG 61.097 55.000 2.35 0.00 34.50 3.66
5734 6344 0.815213 GGTGTCACTGCTTGCACTGA 60.815 55.000 2.35 1.79 34.50 3.41
5735 6345 1.016627 GTGTCACTGCTTGCACTGAA 58.983 50.000 6.54 0.00 32.57 3.02
5736 6346 1.003116 GTGTCACTGCTTGCACTGAAG 60.003 52.381 6.54 0.00 32.57 3.02
5737 6347 0.590195 GTCACTGCTTGCACTGAAGG 59.410 55.000 6.54 0.00 0.00 3.46
5738 6348 0.469494 TCACTGCTTGCACTGAAGGA 59.531 50.000 3.18 0.00 0.00 3.36
5739 6349 1.072806 TCACTGCTTGCACTGAAGGAT 59.927 47.619 3.18 0.00 0.00 3.24
5740 6350 1.199327 CACTGCTTGCACTGAAGGATG 59.801 52.381 0.00 0.00 0.00 3.51
5741 6351 0.170561 CTGCTTGCACTGAAGGATGC 59.829 55.000 0.00 0.00 42.40 3.91
5798 6411 4.322953 CCAGGGAAATTGGGATCTTTGTTG 60.323 45.833 0.00 0.00 31.87 3.33
5799 6412 4.527816 CAGGGAAATTGGGATCTTTGTTGA 59.472 41.667 0.00 0.00 0.00 3.18
5809 6422 5.419788 TGGGATCTTTGTTGATCAATTCCTG 59.580 40.000 12.12 2.17 43.27 3.86
5816 6429 7.723616 TCTTTGTTGATCAATTCCTGGACTAAA 59.276 33.333 12.12 0.75 35.84 1.85
5828 6441 3.191371 CCTGGACTAAAATGCACCTTGTC 59.809 47.826 0.00 0.00 0.00 3.18
5830 6443 4.072131 TGGACTAAAATGCACCTTGTCTC 58.928 43.478 0.00 0.00 0.00 3.36
5844 6457 3.186409 CCTTGTCTCACATGGTTGTAACG 59.814 47.826 0.00 0.00 38.28 3.18
5863 6477 6.936900 TGTAACGAGTGTAGGGTATATACCTC 59.063 42.308 27.24 18.52 45.72 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.135139 CGGCGATGCTCTGCTAATAAA 58.865 47.619 0.00 0.00 0.00 1.40
41 42 1.468520 GCACGCCATACAACTGTTGAT 59.531 47.619 26.00 12.42 0.00 2.57
45 46 1.604604 AAAGCACGCCATACAACTGT 58.395 45.000 0.00 0.00 0.00 3.55
49 50 2.697431 GTGAAAAGCACGCCATACAA 57.303 45.000 0.00 0.00 37.83 2.41
70 71 5.106277 ACGATGCTCTGCTAATAACGCTATA 60.106 40.000 0.00 0.00 0.00 1.31
73 74 2.223829 ACGATGCTCTGCTAATAACGCT 60.224 45.455 0.00 0.00 0.00 5.07
97 98 4.201494 CGTGATACAACTGTTGACGATCAC 60.201 45.833 30.82 30.82 40.76 3.06
108 109 4.082081 TGGTACTAACCCGTGATACAACTG 60.082 45.833 0.00 0.00 46.16 3.16
111 112 3.195396 GGTGGTACTAACCCGTGATACAA 59.805 47.826 6.94 0.00 46.16 2.41
118 119 0.539438 TCGTGGTGGTACTAACCCGT 60.539 55.000 18.63 0.00 46.16 5.28
120 121 1.549203 TCTCGTGGTGGTACTAACCC 58.451 55.000 13.56 0.00 46.16 4.11
121 122 2.669391 CGTTCTCGTGGTGGTACTAACC 60.669 54.545 10.35 10.35 46.98 2.85
159 161 6.134688 CTCAGAACGAGCATGTGGAACAAG 62.135 50.000 0.00 0.00 43.02 3.16
231 234 8.951243 GGGAGAATATGCCTAATTTCTATGTTC 58.049 37.037 0.00 0.00 36.22 3.18
245 248 1.968540 GCGCAGGGGAGAATATGCC 60.969 63.158 0.30 0.00 39.11 4.40
250 253 0.550914 TTTATGGCGCAGGGGAGAAT 59.449 50.000 10.83 0.00 0.00 2.40
256 259 2.671130 ATTGTTTTTATGGCGCAGGG 57.329 45.000 10.83 0.00 0.00 4.45
258 261 6.884096 TTTGATATTGTTTTTATGGCGCAG 57.116 33.333 10.83 0.00 0.00 5.18
320 325 6.594788 ACTCACTACGGGTTTTATTAGTCA 57.405 37.500 0.00 0.00 0.00 3.41
335 340 5.280164 GGTTTAGAGGCGATTACTCACTAC 58.720 45.833 0.00 0.00 37.43 2.73
336 341 4.340381 GGGTTTAGAGGCGATTACTCACTA 59.660 45.833 0.00 0.00 37.43 2.74
338 343 3.455327 GGGTTTAGAGGCGATTACTCAC 58.545 50.000 0.00 0.00 37.43 3.51
339 344 2.100252 CGGGTTTAGAGGCGATTACTCA 59.900 50.000 0.00 0.00 37.43 3.41
360 365 1.309950 GATCCTTTTCTTAGCCCGGC 58.690 55.000 0.00 0.00 0.00 6.13
407 419 4.709886 TGACGATCTAAGAGGGTGAATTGA 59.290 41.667 0.00 0.00 0.00 2.57
421 433 9.878667 TTATCTTTGGTTTTATGTGACGATCTA 57.121 29.630 0.00 0.00 0.00 1.98
449 461 9.799106 TCCAGTAGTAGTAGTAGTAGTTTTTGT 57.201 33.333 0.00 0.00 0.00 2.83
458 470 9.452287 CTCTCTTTTTCCAGTAGTAGTAGTAGT 57.548 37.037 0.00 0.00 0.00 2.73
459 471 8.895737 CCTCTCTTTTTCCAGTAGTAGTAGTAG 58.104 40.741 0.00 0.00 0.00 2.57
460 472 8.609483 TCCTCTCTTTTTCCAGTAGTAGTAGTA 58.391 37.037 0.00 0.00 0.00 1.82
461 473 7.468496 TCCTCTCTTTTTCCAGTAGTAGTAGT 58.532 38.462 0.00 0.00 0.00 2.73
462 474 7.941431 TCCTCTCTTTTTCCAGTAGTAGTAG 57.059 40.000 0.00 0.00 0.00 2.57
463 475 8.716674 TTTCCTCTCTTTTTCCAGTAGTAGTA 57.283 34.615 0.00 0.00 0.00 1.82
464 476 7.613551 TTTCCTCTCTTTTTCCAGTAGTAGT 57.386 36.000 0.00 0.00 0.00 2.73
466 478 9.939802 GTAATTTCCTCTCTTTTTCCAGTAGTA 57.060 33.333 0.00 0.00 0.00 1.82
467 479 8.437575 TGTAATTTCCTCTCTTTTTCCAGTAGT 58.562 33.333 0.00 0.00 0.00 2.73
468 480 8.848474 TGTAATTTCCTCTCTTTTTCCAGTAG 57.152 34.615 0.00 0.00 0.00 2.57
469 481 8.437575 ACTGTAATTTCCTCTCTTTTTCCAGTA 58.562 33.333 0.00 0.00 0.00 2.74
470 482 7.290813 ACTGTAATTTCCTCTCTTTTTCCAGT 58.709 34.615 0.00 0.00 0.00 4.00
471 483 7.751768 ACTGTAATTTCCTCTCTTTTTCCAG 57.248 36.000 0.00 0.00 0.00 3.86
472 484 9.635404 TTTACTGTAATTTCCTCTCTTTTTCCA 57.365 29.630 0.37 0.00 0.00 3.53
516 528 4.470602 GGACTTCTCTTTCCCCTCAAAAA 58.529 43.478 0.00 0.00 0.00 1.94
517 529 3.181433 GGGACTTCTCTTTCCCCTCAAAA 60.181 47.826 0.00 0.00 45.40 2.44
518 530 2.375509 GGGACTTCTCTTTCCCCTCAAA 59.624 50.000 0.00 0.00 45.40 2.69
519 531 1.985895 GGGACTTCTCTTTCCCCTCAA 59.014 52.381 0.00 0.00 45.40 3.02
520 532 1.657804 GGGACTTCTCTTTCCCCTCA 58.342 55.000 0.00 0.00 45.40 3.86
525 537 2.554462 GCAACTTGGGACTTCTCTTTCC 59.446 50.000 0.00 0.00 0.00 3.13
526 538 3.214328 TGCAACTTGGGACTTCTCTTTC 58.786 45.455 0.00 0.00 0.00 2.62
527 539 3.297134 TGCAACTTGGGACTTCTCTTT 57.703 42.857 0.00 0.00 0.00 2.52
528 540 3.297134 TTGCAACTTGGGACTTCTCTT 57.703 42.857 0.00 0.00 0.00 2.85
529 541 3.515602 ATTGCAACTTGGGACTTCTCT 57.484 42.857 0.00 0.00 0.00 3.10
530 542 3.305608 CCAATTGCAACTTGGGACTTCTC 60.306 47.826 22.71 0.00 39.62 2.87
531 543 2.629617 CCAATTGCAACTTGGGACTTCT 59.370 45.455 22.71 0.00 39.62 2.85
532 544 2.365293 ACCAATTGCAACTTGGGACTTC 59.635 45.455 28.65 0.00 46.12 3.01
533 545 2.397597 ACCAATTGCAACTTGGGACTT 58.602 42.857 28.65 15.17 46.12 3.01
534 546 2.086610 ACCAATTGCAACTTGGGACT 57.913 45.000 28.65 15.41 46.12 3.85
535 547 2.102252 TGAACCAATTGCAACTTGGGAC 59.898 45.455 28.65 23.63 46.12 4.46
536 548 2.364970 CTGAACCAATTGCAACTTGGGA 59.635 45.455 28.65 18.17 46.12 4.37
537 549 2.548493 CCTGAACCAATTGCAACTTGGG 60.548 50.000 28.65 19.31 46.12 4.12
540 552 3.030291 TGTCCTGAACCAATTGCAACTT 58.970 40.909 0.00 0.00 0.00 2.66
554 566 7.883311 CCTTTTCCTCTATTTTACTTGTCCTGA 59.117 37.037 0.00 0.00 0.00 3.86
555 567 7.883311 TCCTTTTCCTCTATTTTACTTGTCCTG 59.117 37.037 0.00 0.00 0.00 3.86
563 575 7.818446 ACGTCTTCTCCTTTTCCTCTATTTTAC 59.182 37.037 0.00 0.00 0.00 2.01
583 596 3.436577 TCCACTCCTTCTCTACGTCTT 57.563 47.619 0.00 0.00 0.00 3.01
590 603 2.649742 TGGGATTCCACTCCTTCTCT 57.350 50.000 4.80 0.00 38.32 3.10
594 607 0.332972 GGCTTGGGATTCCACTCCTT 59.667 55.000 4.80 0.00 43.94 3.36
600 613 1.305213 GGCTTGGCTTGGGATTCCA 60.305 57.895 4.80 0.00 42.25 3.53
820 845 3.242291 GCGGTGGGGATAGGAGGG 61.242 72.222 0.00 0.00 0.00 4.30
821 846 3.242291 GGCGGTGGGGATAGGAGG 61.242 72.222 0.00 0.00 0.00 4.30
822 847 3.242291 GGGCGGTGGGGATAGGAG 61.242 72.222 0.00 0.00 0.00 3.69
837 862 0.838122 ATATGAAGGAGGGAGGCGGG 60.838 60.000 0.00 0.00 0.00 6.13
838 863 0.610687 GATATGAAGGAGGGAGGCGG 59.389 60.000 0.00 0.00 0.00 6.13
839 864 1.548269 GAGATATGAAGGAGGGAGGCG 59.452 57.143 0.00 0.00 0.00 5.52
840 865 2.831526 GAGAGATATGAAGGAGGGAGGC 59.168 54.545 0.00 0.00 0.00 4.70
841 866 3.440127 GGAGAGATATGAAGGAGGGAGG 58.560 54.545 0.00 0.00 0.00 4.30
842 867 3.077391 AGGGAGAGATATGAAGGAGGGAG 59.923 52.174 0.00 0.00 0.00 4.30
843 868 3.075181 AGGGAGAGATATGAAGGAGGGA 58.925 50.000 0.00 0.00 0.00 4.20
844 869 3.077391 AGAGGGAGAGATATGAAGGAGGG 59.923 52.174 0.00 0.00 0.00 4.30
845 870 4.402616 AGAGGGAGAGATATGAAGGAGG 57.597 50.000 0.00 0.00 0.00 4.30
846 871 5.261216 GGTAGAGGGAGAGATATGAAGGAG 58.739 50.000 0.00 0.00 0.00 3.69
847 872 4.044825 GGGTAGAGGGAGAGATATGAAGGA 59.955 50.000 0.00 0.00 0.00 3.36
848 873 4.349365 GGGTAGAGGGAGAGATATGAAGG 58.651 52.174 0.00 0.00 0.00 3.46
849 874 4.202727 TGGGGTAGAGGGAGAGATATGAAG 60.203 50.000 0.00 0.00 0.00 3.02
850 875 3.732742 TGGGGTAGAGGGAGAGATATGAA 59.267 47.826 0.00 0.00 0.00 2.57
851 876 3.346028 TGGGGTAGAGGGAGAGATATGA 58.654 50.000 0.00 0.00 0.00 2.15
852 877 3.835478 TGGGGTAGAGGGAGAGATATG 57.165 52.381 0.00 0.00 0.00 1.78
853 878 3.503227 GCTTGGGGTAGAGGGAGAGATAT 60.503 52.174 0.00 0.00 0.00 1.63
854 879 2.158295 GCTTGGGGTAGAGGGAGAGATA 60.158 54.545 0.00 0.00 0.00 1.98
855 880 1.413808 GCTTGGGGTAGAGGGAGAGAT 60.414 57.143 0.00 0.00 0.00 2.75
856 881 0.032017 GCTTGGGGTAGAGGGAGAGA 60.032 60.000 0.00 0.00 0.00 3.10
857 882 0.031616 AGCTTGGGGTAGAGGGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
858 883 0.032017 GAGCTTGGGGTAGAGGGAGA 60.032 60.000 0.00 0.00 0.00 3.71
859 884 1.395826 CGAGCTTGGGGTAGAGGGAG 61.396 65.000 0.00 0.00 0.00 4.30
860 885 1.381327 CGAGCTTGGGGTAGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
861 886 2.435693 CCGAGCTTGGGGTAGAGGG 61.436 68.421 12.81 0.00 0.00 4.30
862 887 2.435693 CCCGAGCTTGGGGTAGAGG 61.436 68.421 29.74 3.39 46.17 3.69
863 888 3.221222 CCCGAGCTTGGGGTAGAG 58.779 66.667 29.74 4.15 46.17 2.43
870 895 3.329542 TAGCAAGGCCCGAGCTTGG 62.330 63.158 17.90 13.75 39.68 3.61
871 896 1.817099 CTAGCAAGGCCCGAGCTTG 60.817 63.158 17.90 12.83 39.68 4.01
872 897 2.586792 CTAGCAAGGCCCGAGCTT 59.413 61.111 17.90 4.65 39.68 3.74
873 898 4.168291 GCTAGCAAGGCCCGAGCT 62.168 66.667 17.03 17.03 42.14 4.09
874 899 2.707529 CTAGCTAGCAAGGCCCGAGC 62.708 65.000 18.83 1.11 38.76 5.03
875 900 1.365633 CTAGCTAGCAAGGCCCGAG 59.634 63.158 18.83 0.00 0.00 4.63
876 901 3.538614 CTAGCTAGCAAGGCCCGA 58.461 61.111 18.83 0.00 0.00 5.14
894 919 2.343101 CTCTCTCTCTACGGCGGATAG 58.657 57.143 13.24 4.66 0.00 2.08
895 920 1.002201 CCTCTCTCTCTACGGCGGATA 59.998 57.143 13.24 0.00 0.00 2.59
896 921 0.250553 CCTCTCTCTCTACGGCGGAT 60.251 60.000 13.24 0.00 0.00 4.18
897 922 1.146485 CCTCTCTCTCTACGGCGGA 59.854 63.158 13.24 0.00 0.00 5.54
898 923 0.882927 CTCCTCTCTCTCTACGGCGG 60.883 65.000 13.24 0.00 0.00 6.13
899 924 0.105224 TCTCCTCTCTCTCTACGGCG 59.895 60.000 4.80 4.80 0.00 6.46
900 925 2.218603 CTTCTCCTCTCTCTCTACGGC 58.781 57.143 0.00 0.00 0.00 5.68
901 926 2.436542 TCCTTCTCCTCTCTCTCTACGG 59.563 54.545 0.00 0.00 0.00 4.02
902 927 3.830744 TCCTTCTCCTCTCTCTCTACG 57.169 52.381 0.00 0.00 0.00 3.51
903 928 4.165372 TCCTTCCTTCTCCTCTCTCTCTAC 59.835 50.000 0.00 0.00 0.00 2.59
904 929 4.376223 TCCTTCCTTCTCCTCTCTCTCTA 58.624 47.826 0.00 0.00 0.00 2.43
905 930 3.197983 TCCTTCCTTCTCCTCTCTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
906 931 3.555966 CTCCTTCCTTCTCCTCTCTCTC 58.444 54.545 0.00 0.00 0.00 3.20
907 932 2.244769 CCTCCTTCCTTCTCCTCTCTCT 59.755 54.545 0.00 0.00 0.00 3.10
908 933 2.666317 CCTCCTTCCTTCTCCTCTCTC 58.334 57.143 0.00 0.00 0.00 3.20
909 934 1.342975 GCCTCCTTCCTTCTCCTCTCT 60.343 57.143 0.00 0.00 0.00 3.10
910 935 1.119684 GCCTCCTTCCTTCTCCTCTC 58.880 60.000 0.00 0.00 0.00 3.20
911 936 0.326143 GGCCTCCTTCCTTCTCCTCT 60.326 60.000 0.00 0.00 0.00 3.69
912 937 1.341913 GGGCCTCCTTCCTTCTCCTC 61.342 65.000 0.84 0.00 0.00 3.71
913 938 1.307430 GGGCCTCCTTCCTTCTCCT 60.307 63.158 0.84 0.00 0.00 3.69
914 939 2.736826 CGGGCCTCCTTCCTTCTCC 61.737 68.421 0.84 0.00 0.00 3.71
915 940 2.736826 CCGGGCCTCCTTCCTTCTC 61.737 68.421 0.84 0.00 0.00 2.87
916 941 2.689034 CCGGGCCTCCTTCCTTCT 60.689 66.667 0.84 0.00 0.00 2.85
917 942 3.798511 CCCGGGCCTCCTTCCTTC 61.799 72.222 8.08 0.00 0.00 3.46
941 966 0.459759 GAGATCCGACGGAACCAACC 60.460 60.000 22.55 6.20 34.34 3.77
942 967 0.801067 CGAGATCCGACGGAACCAAC 60.801 60.000 22.55 11.41 41.76 3.77
943 968 1.509463 CGAGATCCGACGGAACCAA 59.491 57.895 22.55 0.00 41.76 3.67
944 969 3.060020 GCGAGATCCGACGGAACCA 62.060 63.158 22.55 0.00 41.76 3.67
945 970 2.278661 GCGAGATCCGACGGAACC 60.279 66.667 22.55 15.58 41.76 3.62
946 971 2.278661 GGCGAGATCCGACGGAAC 60.279 66.667 22.55 18.92 41.76 3.62
952 977 2.519541 CCTGGAGGCGAGATCCGA 60.520 66.667 7.64 0.00 39.91 4.55
953 978 2.835431 ACCTGGAGGCGAGATCCG 60.835 66.667 0.00 0.00 39.91 4.18
954 979 1.758514 TGACCTGGAGGCGAGATCC 60.759 63.158 0.00 0.00 39.32 3.36
955 980 1.439644 GTGACCTGGAGGCGAGATC 59.560 63.158 0.00 0.00 39.32 2.75
956 981 2.060980 GGTGACCTGGAGGCGAGAT 61.061 63.158 0.00 0.00 39.32 2.75
957 982 2.680352 GGTGACCTGGAGGCGAGA 60.680 66.667 0.00 0.00 39.32 4.04
971 996 2.187946 GATCCCAGCAGACGGGTG 59.812 66.667 0.00 0.00 44.81 4.61
972 997 2.039624 AGATCCCAGCAGACGGGT 59.960 61.111 0.00 0.00 44.81 5.28
973 998 2.818132 GAGATCCCAGCAGACGGG 59.182 66.667 0.00 0.00 46.03 5.28
974 999 2.415010 CGAGATCCCAGCAGACGG 59.585 66.667 0.00 0.00 0.00 4.79
975 1000 2.279120 GCGAGATCCCAGCAGACG 60.279 66.667 0.00 0.00 0.00 4.18
976 1001 2.107953 GGCGAGATCCCAGCAGAC 59.892 66.667 6.93 0.00 0.00 3.51
977 1002 3.157252 GGGCGAGATCCCAGCAGA 61.157 66.667 6.93 0.00 45.82 4.26
978 1003 4.598894 CGGGCGAGATCCCAGCAG 62.599 72.222 6.93 0.00 46.92 4.24
985 1010 4.996434 CATGGGGCGGGCGAGATC 62.996 72.222 0.00 0.00 0.00 2.75
1119 1424 3.018423 ACCTTGTCAGAAAGCAAAGGT 57.982 42.857 0.00 0.00 0.00 3.50
1350 1656 5.416013 CCCAAACCTTGAAGACTAAATCTCC 59.584 44.000 0.00 0.00 36.27 3.71
1533 1881 7.523709 GCACAAATTGGAGAAGAACAAGGAATA 60.524 37.037 0.00 0.00 0.00 1.75
1598 1950 1.948834 TCAACAGCAACACCAGACATG 59.051 47.619 0.00 0.00 0.00 3.21
1683 2035 3.068560 CGTAAAATCTTGAACCACCGGA 58.931 45.455 9.46 0.00 0.00 5.14
1762 2114 6.348868 GCAGCAAGCTAAATTAACAGAGAAGT 60.349 38.462 0.00 0.00 41.15 3.01
1763 2115 6.026513 GCAGCAAGCTAAATTAACAGAGAAG 58.973 40.000 0.00 0.00 41.15 2.85
1799 2151 8.475331 TTCTGTTAGCTTGCAAGTAAGTATAC 57.525 34.615 26.55 14.98 0.00 1.47
1800 2152 9.667107 AATTCTGTTAGCTTGCAAGTAAGTATA 57.333 29.630 26.55 8.05 0.00 1.47
1801 2153 8.454106 CAATTCTGTTAGCTTGCAAGTAAGTAT 58.546 33.333 26.55 13.09 0.00 2.12
1998 2353 7.602753 AGCAAAATTCCTGAACCTTTATGTAC 58.397 34.615 0.00 0.00 0.00 2.90
1999 2354 7.775053 AGCAAAATTCCTGAACCTTTATGTA 57.225 32.000 0.00 0.00 0.00 2.29
2000 2355 6.670695 AGCAAAATTCCTGAACCTTTATGT 57.329 33.333 0.00 0.00 0.00 2.29
2090 2446 4.592778 ACAAACCATACCAAAAGAATGGCT 59.407 37.500 0.54 0.00 44.75 4.75
2091 2447 4.893608 ACAAACCATACCAAAAGAATGGC 58.106 39.130 0.54 0.00 44.75 4.40
2092 2448 6.394809 GGTACAAACCATACCAAAAGAATGG 58.605 40.000 0.00 0.00 45.98 3.16
2120 2480 8.086522 CCATAATAAGAAGCAGAAATTCCCATG 58.913 37.037 0.00 0.00 0.00 3.66
2127 2487 7.201767 GCACAGACCATAATAAGAAGCAGAAAT 60.202 37.037 0.00 0.00 0.00 2.17
2157 2517 6.801575 TGAGTAACAACAATTGGGAGAAAAC 58.198 36.000 10.83 0.00 34.12 2.43
2174 2534 8.076178 ACAGCATGAACAATACTTTTGAGTAAC 58.924 33.333 0.00 0.00 39.69 2.50
2176 2536 7.744087 ACAGCATGAACAATACTTTTGAGTA 57.256 32.000 0.00 0.00 39.69 2.59
2177 2537 6.639632 ACAGCATGAACAATACTTTTGAGT 57.360 33.333 0.00 0.00 39.69 3.41
2178 2538 7.436080 ACAAACAGCATGAACAATACTTTTGAG 59.564 33.333 0.00 0.00 39.69 3.02
2194 2554 2.566833 TAGTGGCAGACAAACAGCAT 57.433 45.000 0.00 0.00 32.56 3.79
2205 2565 6.992123 TCAATACAAGATGGTATTAGTGGCAG 59.008 38.462 0.00 0.00 40.92 4.85
2217 2577 9.941664 GATGTTAACATTCTCAATACAAGATGG 57.058 33.333 21.63 0.00 36.57 3.51
2218 2578 9.941664 GGATGTTAACATTCTCAATACAAGATG 57.058 33.333 21.63 0.00 36.57 2.90
2266 2626 8.956426 CCATGGAAGTAACACAAATATACAAGT 58.044 33.333 5.56 0.00 0.00 3.16
2268 2628 8.952278 GTCCATGGAAGTAACACAAATATACAA 58.048 33.333 18.20 0.00 0.00 2.41
2270 2630 8.500753 TGTCCATGGAAGTAACACAAATATAC 57.499 34.615 18.20 0.00 0.00 1.47
2271 2631 9.337396 GATGTCCATGGAAGTAACACAAATATA 57.663 33.333 18.20 0.00 0.00 0.86
2290 2650 8.461222 CAATTAGCAAGTTAATTCTGATGTCCA 58.539 33.333 0.00 0.00 32.38 4.02
2317 2678 3.721035 ACTGCCTGCAAAATTCAAAGAC 58.279 40.909 0.00 0.00 0.00 3.01
2329 2690 6.378661 AAATATCTCCATATACTGCCTGCA 57.621 37.500 0.00 0.00 0.00 4.41
2330 2691 7.443575 CCATAAATATCTCCATATACTGCCTGC 59.556 40.741 0.00 0.00 0.00 4.85
2481 2842 3.071023 TGGTCACCTTGAGTTGTAGAAGG 59.929 47.826 0.00 0.00 41.85 3.46
2572 2936 2.622942 TGAGCAGAAACATTGGGAACAC 59.377 45.455 0.00 0.00 42.67 3.32
2579 2943 5.616424 GCTGTTACTCTGAGCAGAAACATTG 60.616 44.000 14.61 8.22 37.47 2.82
2584 2948 2.677199 CGCTGTTACTCTGAGCAGAAA 58.323 47.619 12.97 0.00 36.94 2.52
2586 2950 0.109086 GCGCTGTTACTCTGAGCAGA 60.109 55.000 12.97 0.00 39.62 4.26
2630 2994 3.054875 CAGGGGTCAGTGATGAATTCTGA 60.055 47.826 7.05 0.00 36.12 3.27
2753 3117 3.469008 TTGGTATAGGCAGAACCATCG 57.531 47.619 5.80 0.00 42.65 3.84
2918 3282 4.613437 ACCACTAAATGCCTTTGATCCAT 58.387 39.130 0.00 0.00 0.00 3.41
2994 3358 5.012046 TCCCCATGCTACTGTTACTATGATG 59.988 44.000 0.00 0.00 0.00 3.07
2995 3359 5.155161 TCCCCATGCTACTGTTACTATGAT 58.845 41.667 0.00 0.00 0.00 2.45
2996 3360 4.552674 TCCCCATGCTACTGTTACTATGA 58.447 43.478 0.00 0.00 0.00 2.15
3047 3411 7.254185 CGCGTCCTAACAAATACAATAGCTTAA 60.254 37.037 0.00 0.00 0.00 1.85
3055 3419 2.669434 GAGCGCGTCCTAACAAATACAA 59.331 45.455 8.43 0.00 0.00 2.41
3070 3434 3.722555 TCAAAGTTTATTGAGAGCGCG 57.277 42.857 0.00 0.00 34.50 6.86
3096 3460 7.014230 CCCCACTATGTTTCAGAAGAAGAAAAA 59.986 37.037 0.00 0.00 36.80 1.94
3142 3506 7.136119 TCATAAACAGGTCAAAACGATCAAAC 58.864 34.615 0.00 0.00 0.00 2.93
3149 3513 7.749539 AAAACTTCATAAACAGGTCAAAACG 57.250 32.000 0.00 0.00 0.00 3.60
3183 3547 9.817365 CTTCAGTATGCAAATTATATACAGCAC 57.183 33.333 0.00 0.00 34.54 4.40
3459 3838 2.543777 TAACCTGGAATCATAGCCGC 57.456 50.000 0.00 0.00 0.00 6.53
3460 3839 5.118990 CCATATAACCTGGAATCATAGCCG 58.881 45.833 0.00 0.00 35.70 5.52
3507 3886 0.911769 TCTGGGCCTGTTGTATCTGG 59.088 55.000 4.53 0.00 0.00 3.86
3649 4028 1.228245 GGTCTGCCCTTTCACAGCA 60.228 57.895 0.00 0.00 33.80 4.41
3689 4068 6.393990 CCTTATCAGGTATGTCACTAGCATC 58.606 44.000 0.00 0.00 35.06 3.91
3960 4340 6.872585 TCAATTAGCCCAAGGAAATCAAAT 57.127 33.333 0.00 0.00 0.00 2.32
3992 4372 7.504924 TGTATTCACCTGAAAGTTTGTAAGG 57.495 36.000 0.00 0.00 37.61 2.69
4081 4461 1.211703 TCCACTTGTCTTGTTGCCAGA 59.788 47.619 0.00 0.00 0.00 3.86
4181 4561 4.329545 GTGACCGGCTTGCCCTCA 62.330 66.667 0.00 4.49 0.00 3.86
4263 4643 7.527568 ACAATAAGGTACAGCTATCTAGGAC 57.472 40.000 0.00 0.00 0.00 3.85
4267 4647 8.534954 ACAGAACAATAAGGTACAGCTATCTA 57.465 34.615 0.00 0.00 0.00 1.98
4274 4654 8.095169 AGGAGTAAACAGAACAATAAGGTACAG 58.905 37.037 0.00 0.00 0.00 2.74
4395 4777 0.876342 GGCGGTTCTCATAGAAGGCG 60.876 60.000 0.00 0.00 36.35 5.52
4474 4856 6.516739 TGAGAAATGACGATTCACTAGAGT 57.483 37.500 0.00 0.00 33.38 3.24
4481 4863 5.294306 GGCAGTAATGAGAAATGACGATTCA 59.706 40.000 0.00 0.00 35.73 2.57
4506 4888 6.647067 GCTACAACAAGAACAGAACAGTAGAT 59.353 38.462 0.00 0.00 30.72 1.98
4553 4935 1.820519 GTCCCACACCTACGTACATGA 59.179 52.381 0.00 0.00 0.00 3.07
4560 4942 0.815734 CCTACTGTCCCACACCTACG 59.184 60.000 0.00 0.00 0.00 3.51
4576 4958 0.830648 CAACAGGATTCGGAGCCCTA 59.169 55.000 0.00 0.00 29.11 3.53
4588 4970 0.034896 GTTTCTCTCCGGCAACAGGA 59.965 55.000 0.00 0.00 37.62 3.86
4597 4979 2.734079 GAGTTCTTGCTGTTTCTCTCCG 59.266 50.000 0.00 0.00 0.00 4.63
4609 4991 2.556287 CCGTTGGCGAGTTCTTGC 59.444 61.111 3.64 3.64 41.33 4.01
4612 4994 1.004918 CTTCCCGTTGGCGAGTTCT 60.005 57.895 0.00 0.00 41.33 3.01
4616 4998 4.697756 TGGCTTCCCGTTGGCGAG 62.698 66.667 0.00 0.00 41.33 5.03
4639 5021 0.877071 TGACACCGTTCGGTAGAGAC 59.123 55.000 16.51 6.21 36.64 3.36
4643 5025 1.355971 CCATTGACACCGTTCGGTAG 58.644 55.000 16.51 12.93 36.64 3.18
4702 5084 2.884639 GTTGACACCATTTGCTACAGGT 59.115 45.455 0.00 0.00 33.91 4.00
4711 5093 1.544724 CATCCCCGTTGACACCATTT 58.455 50.000 0.00 0.00 0.00 2.32
4720 5102 1.644786 GAACCTTCGCATCCCCGTTG 61.645 60.000 0.00 0.00 0.00 4.10
4774 5159 3.620300 CTTCGCCGCGTAGGTCACA 62.620 63.158 13.39 0.00 43.70 3.58
4831 5216 0.512952 CGACAGGCTTTTTCTCGGTG 59.487 55.000 0.00 0.00 0.00 4.94
4840 5225 2.110213 TTGGCGACGACAGGCTTT 59.890 55.556 2.40 0.00 35.01 3.51
4898 5284 0.104777 ATGGCTAGCTGGGAGGATCA 60.105 55.000 15.72 0.44 36.25 2.92
4920 5306 1.890510 AGCACCGTCCGTTTGTTCC 60.891 57.895 0.00 0.00 0.00 3.62
4960 5346 0.042131 TGATCGGTACTTGGGACCCT 59.958 55.000 13.00 0.00 32.95 4.34
4967 5354 3.053831 ACCTTTGGTGATCGGTACTTG 57.946 47.619 0.00 0.00 32.98 3.16
5003 5393 7.080353 AGCTAGGGAATAAACCTAACTATCCA 58.920 38.462 0.00 0.00 39.94 3.41
5018 5408 5.036236 AGGAGAAAAAGAGAGCTAGGGAAT 58.964 41.667 0.00 0.00 0.00 3.01
5019 5409 4.223923 CAGGAGAAAAAGAGAGCTAGGGAA 59.776 45.833 0.00 0.00 0.00 3.97
5020 5410 3.772025 CAGGAGAAAAAGAGAGCTAGGGA 59.228 47.826 0.00 0.00 0.00 4.20
5034 5430 4.713824 AATACGACGATGACAGGAGAAA 57.286 40.909 0.00 0.00 0.00 2.52
5039 5435 3.058432 ACGGATAATACGACGATGACAGG 60.058 47.826 0.00 0.00 34.93 4.00
5045 5441 6.906659 ACTGAAATACGGATAATACGACGAT 58.093 36.000 0.00 0.00 34.93 3.73
5059 5458 5.786401 AGAGCTAAGCAAACTGAAATACG 57.214 39.130 0.00 0.00 0.00 3.06
5060 5459 8.936864 TCTTTAGAGCTAAGCAAACTGAAATAC 58.063 33.333 0.00 0.00 0.00 1.89
5115 5517 6.319911 CAGGTTCTCTTTTCTCTTTTTCTGGT 59.680 38.462 0.00 0.00 0.00 4.00
5189 5597 2.657296 AGACGCGACACAACCACG 60.657 61.111 15.93 0.00 0.00 4.94
5191 5599 0.741574 AAACAGACGCGACACAACCA 60.742 50.000 15.93 0.00 0.00 3.67
5248 5661 1.217882 CTCACCCAACACTCGAACAC 58.782 55.000 0.00 0.00 0.00 3.32
5249 5662 0.828022 ACTCACCCAACACTCGAACA 59.172 50.000 0.00 0.00 0.00 3.18
5250 5663 1.217882 CACTCACCCAACACTCGAAC 58.782 55.000 0.00 0.00 0.00 3.95
5251 5664 0.105964 CCACTCACCCAACACTCGAA 59.894 55.000 0.00 0.00 0.00 3.71
5428 6020 1.382420 ACACCTTTGCCTTTGCCCA 60.382 52.632 0.00 0.00 36.33 5.36
5500 6102 1.678101 AGCACACCACTGCTTTTCTTC 59.322 47.619 0.00 0.00 45.64 2.87
5533 6135 1.242076 GACAAGCAGTGAGGCAACAT 58.758 50.000 0.00 0.00 41.41 2.71
5560 6162 5.419788 ACAGGCATCAAAATTCTGAAGCATA 59.580 36.000 10.82 0.00 40.86 3.14
5575 6181 1.761784 AGCAACCAAAAACAGGCATCA 59.238 42.857 0.00 0.00 0.00 3.07
5607 6213 6.348786 CCACTGACAAGGACATTTATTCACAG 60.349 42.308 0.00 0.00 0.00 3.66
5662 6268 5.183904 TCCAAATCCTTTTTAAGCTGAGCTC 59.816 40.000 7.72 6.82 38.25 4.09
5679 6285 3.001736 GCAGCTAGTGATCGTTCCAAATC 59.998 47.826 0.00 0.00 0.00 2.17
5703 6313 1.421268 AGTGACACCACCATGACACAT 59.579 47.619 0.84 0.00 44.42 3.21
5729 6339 1.267806 GGTGTTGTGCATCCTTCAGTG 59.732 52.381 0.00 0.00 0.00 3.66
5730 6340 1.133823 TGGTGTTGTGCATCCTTCAGT 60.134 47.619 0.00 0.00 0.00 3.41
5731 6341 1.267806 GTGGTGTTGTGCATCCTTCAG 59.732 52.381 0.00 0.00 0.00 3.02
5732 6342 1.133823 AGTGGTGTTGTGCATCCTTCA 60.134 47.619 0.00 0.00 0.00 3.02
5733 6343 1.537202 GAGTGGTGTTGTGCATCCTTC 59.463 52.381 0.00 0.00 0.00 3.46
5734 6344 1.609208 GAGTGGTGTTGTGCATCCTT 58.391 50.000 0.00 0.00 0.00 3.36
5735 6345 0.250901 GGAGTGGTGTTGTGCATCCT 60.251 55.000 0.00 0.00 0.00 3.24
5736 6346 0.537143 TGGAGTGGTGTTGTGCATCC 60.537 55.000 0.00 0.00 0.00 3.51
5737 6347 1.200716 CATGGAGTGGTGTTGTGCATC 59.799 52.381 0.00 0.00 0.00 3.91
5738 6348 1.250328 CATGGAGTGGTGTTGTGCAT 58.750 50.000 0.00 0.00 0.00 3.96
5739 6349 0.822944 CCATGGAGTGGTGTTGTGCA 60.823 55.000 5.56 0.00 43.44 4.57
5740 6350 1.959085 CCATGGAGTGGTGTTGTGC 59.041 57.895 5.56 0.00 43.44 4.57
5769 6382 4.482025 AGATCCCAATTTCCCTGGACAATA 59.518 41.667 0.00 0.00 35.85 1.90
5770 6383 3.273084 AGATCCCAATTTCCCTGGACAAT 59.727 43.478 0.00 0.00 35.85 2.71
5773 6386 3.388552 AAGATCCCAATTTCCCTGGAC 57.611 47.619 0.00 0.00 35.85 4.02
5798 6411 6.268566 GTGCATTTTAGTCCAGGAATTGATC 58.731 40.000 0.00 0.00 0.00 2.92
5799 6412 5.127682 GGTGCATTTTAGTCCAGGAATTGAT 59.872 40.000 0.00 0.00 0.00 2.57
5809 6422 4.072131 TGAGACAAGGTGCATTTTAGTCC 58.928 43.478 0.00 0.00 0.00 3.85
5816 6429 2.165167 CCATGTGAGACAAGGTGCATT 58.835 47.619 0.00 0.00 32.64 3.56
5828 6441 3.390135 ACACTCGTTACAACCATGTGAG 58.610 45.455 11.24 4.13 40.84 3.51
5830 6443 3.678072 CCTACACTCGTTACAACCATGTG 59.322 47.826 0.00 0.00 40.84 3.21
5863 6477 1.547901 GGTCAAAACAAGAGGGGAGGG 60.548 57.143 0.00 0.00 0.00 4.30
5867 6481 2.959465 AGAGGTCAAAACAAGAGGGG 57.041 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.